AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0574910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574910 MtrunA17_Chr8g0391901 99.055 635 6 0 1 635 1 635 0.0 1298
Msa0574910 MtrunA17_Chr2g0297971 67.190 573 186 1 59 629 37 609 0.0 813
Msa0574910 MtrunA17_Chr4g0002171 27.139 409 254 15 238 611 32 431 1.22e-30 125
Msa0574910 MtrunA17_Chr2g0327561 47.273 110 49 1 63 172 158 258 2.55e-22 102
Msa0574910 MtrunA17_Chr2g0327561 35.455 110 62 1 63 172 441 541 4.58e-13 72.8
Msa0574910 MtrunA17_Chr8g0369091 35.450 189 99 5 59 246 124 290 3.12e-19 92.4
Msa0574910 MtrunA17_Chr8g0369091 35.455 110 62 1 63 172 412 512 2.82e-12 70.1
Msa0574910 MtrunA17_Chr1g0192821 29.012 324 197 15 311 629 22 317 5.08e-18 88.2
Msa0574910 MtrunA17_Chr4g0061581 29.352 293 156 18 303 572 3 267 2.27e-15 79.7
Msa0574910 MtrunA17_Chr4g0061581 32.000 175 109 6 303 472 115 284 1.07e-12 71.2
Msa0574910 MtrunA17_Chr1g0197401 27.317 205 140 5 291 491 115 314 8.60e-15 77.4
Msa0574910 MtrunA17_Chr1g0197401 25.305 328 204 14 303 614 15 317 4.22e-12 68.9
Msa0574910 MtrunA17_Chr1g0198221 30.721 319 177 20 316 615 20 313 4.00e-14 75.5
Msa0574910 MtrunA17_Chr1g0198221 29.924 264 154 11 365 618 17 259 7.87e-14 74.3
Msa0574910 MtrunA17_Chr4g0030361 33.077 130 76 2 63 190 122 242 8.63e-14 74.7
Msa0574910 MtrunA17_Chr4g0074871 29.470 302 174 18 320 611 282 554 4.33e-13 72.8
Msa0574910 MtrunA17_Chr2g0322121 28.638 213 147 4 303 512 154 364 1.06e-12 71.6
Msa0574910 MtrunA17_Chr7g0272641 27.500 200 132 6 298 491 275 467 6.20e-12 68.9
Msa0574910 MtrunA17_Chr7g0272641 26.087 345 210 17 303 630 174 490 5.38e-11 65.9
Msa0574910 MtrunA17_Chr1g0196221 26.009 223 158 6 298 517 81 299 8.65e-12 68.2
Msa0574910 MtrunA17_Chr1g0196221 26.866 268 158 11 364 611 26 275 1.81e-11 67.4
Msa0574910 MtrunA17_Chr5g0415981 34.545 110 63 1 63 172 252 352 9.45e-12 67.4
Msa0574910 MtrunA17_Chr4g0025471 27.230 213 150 4 303 512 159 369 6.81e-11 65.9
Msa0574910 MtrunA17_Chr2g0286241 25.610 328 198 16 303 619 76 368 6.94e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0574910 AT1G68050.1 79.775 623 116 4 15 635 5 619 0.0 1021
Msa0574910 AT5G57360.1 65.289 605 194 4 33 629 10 606 0.0 804
Msa0574910 AT5G57360.2 65.042 595 192 4 33 619 10 596 0.0 789
Msa0574910 AT2G18915.2 62.349 579 195 5 59 629 42 605 0.0 740
Msa0574910 AT2G18915.1 61.102 581 189 7 59 629 42 595 0.0 716
Msa0574910 AT1G51550.1 26.667 405 252 16 243 611 41 436 3.15e-28 119
Msa0574910 AT5G58140.4 43.860 114 55 1 59 172 130 234 1.46e-20 96.7
Msa0574910 AT5G58140.4 33.871 124 71 2 63 184 390 504 2.07e-12 70.9
Msa0574910 AT5G58140.3 43.860 114 55 1 59 172 130 234 2.11e-20 96.7
Msa0574910 AT5G58140.3 33.871 124 71 2 63 184 390 504 2.80e-12 70.5
Msa0574910 AT5G58140.6 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0574910 AT5G58140.6 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0574910 AT5G58140.7 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0574910 AT5G58140.7 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0574910 AT5G58140.5 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0574910 AT5G58140.5 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0574910 AT5G58140.2 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0574910 AT5G58140.2 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0574910 AT5G58140.1 43.860 114 55 1 59 172 130 234 2.84e-20 96.3
Msa0574910 AT5G58140.1 33.871 124 71 2 63 184 390 504 3.50e-12 70.1
Msa0574910 AT3G45780.2 40.909 110 56 1 63 172 198 298 2.55e-17 86.7
Msa0574910 AT3G45780.2 32.331 133 78 2 63 195 476 596 1.51e-12 71.6
Msa0574910 AT3G45780.1 40.909 110 56 1 63 172 198 298 2.55e-17 86.7
Msa0574910 AT3G45780.1 32.331 133 78 2 63 195 476 596 1.51e-12 71.6
Msa0574910 AT2G36360.5 30.741 270 153 11 365 618 17 268 7.31e-17 84.3
Msa0574910 AT1G18610.1 32.056 287 155 18 356 625 3 266 7.76e-17 84.7
Msa0574910 AT1G18610.1 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
Msa0574910 AT1G18610.2 32.056 287 155 18 356 625 3 266 7.76e-17 84.7
Msa0574910 AT1G18610.2 28.526 312 162 19 287 571 44 321 1.01e-14 77.8
Msa0574910 AT1G03445.1 28.679 265 164 11 303 557 86 335 2.23e-16 83.6
Msa0574910 AT1G03445.2 29.020 255 157 10 303 547 86 326 2.38e-16 83.6
Msa0574910 AT2G36360.3 30.189 265 152 11 365 618 17 259 1.03e-15 80.9
Msa0574910 AT2G36360.3 28.527 319 186 17 315 615 19 313 1.44e-11 67.8
Msa0574910 AT2G36360.4 30.189 265 152 11 365 618 17 259 1.06e-15 80.9
Msa0574910 AT2G36360.4 28.527 319 186 17 315 615 19 313 1.50e-11 67.8
Msa0574910 AT2G36360.2 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
Msa0574910 AT2G36360.2 28.527 319 186 17 315 615 19 313 1.73e-11 67.4
Msa0574910 AT2G36360.1 30.189 265 152 11 365 618 17 259 1.15e-15 80.5
Msa0574910 AT2G36360.1 28.527 319 186 17 315 615 19 313 1.73e-11 67.4
Msa0574910 AT2G02710.2 33.636 110 64 1 63 172 260 360 1.83e-14 76.3
Msa0574910 AT2G02710.2 30.464 151 81 6 61 196 36 177 7.74e-11 65.1
Msa0574910 AT1G74150.1 28.571 266 152 14 317 572 27 264 4.72e-13 72.8
Msa0574910 AT1G74150.2 28.571 266 152 14 317 572 27 264 5.22e-13 72.4
Msa0574910 AT1G74150.3 28.571 266 152 14 317 572 27 264 5.25e-13 72.4
Msa0574910 AT5G04420.2 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0574910 AT5G04420.1 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0574910 AT5G04420.3 27.751 209 137 6 306 505 143 346 5.37e-13 72.4
Msa0574910 AT2G02710.1 33.036 112 64 2 63 172 260 362 7.60e-13 71.2
Msa0574910 AT2G02710.1 32.743 113 66 3 61 172 36 139 8.08e-11 65.1
Msa0574910 AT1G08420.1 28.638 213 147 4 303 512 175 385 8.27e-13 72.4
Msa0574910 AT2G27210.1 28.169 213 148 4 303 512 164 374 9.70e-13 72.0
Msa0574910 AT1G08420.2 29.146 199 136 4 303 498 175 371 2.57e-12 70.9
Msa0574910 AT2G27210.2 28.643 199 137 4 303 498 164 360 3.25e-12 70.5
Msa0574910 AT5G27630.3 29.911 224 133 11 289 496 206 421 6.08e-12 69.3
Msa0574910 AT5G27630.4 29.911 224 133 11 289 496 206 421 7.00e-12 68.9
Msa0574910 AT5G27630.1 29.911 224 133 11 289 496 206 421 7.91e-12 68.9
Msa0574910 AT5G27630.2 29.911 224 133 11 289 496 206 421 1.04e-11 68.2
Msa0574910 AT2G02710.4 32.743 113 66 3 61 172 36 139 6.45e-11 64.7
Msa0574910 AT2G02710.3 30.464 151 81 6 61 196 36 177 6.71e-11 64.7

Find 181 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAATAGGCTTGTATTATT+TGG 0.172159 4_1:-78665509 Msa0574910:CDS
TGTGGGAGGGTTATTATATT+TGG 0.207983 4_1:-78664837 Msa0574910:CDS
CATCGATTGGTTCTGTTTGC+AGG 0.229475 4_1:-78665751 Msa0574910:CDS
CTTCATGGACTCCTCCTTCT+AGG 0.236476 4_1:-78665085 Msa0574910:CDS
CACAATTGAAGGCTCTAAAT+TGG 0.241941 4_1:-78665204 Msa0574910:CDS
GGGCACTCGCTCTCAGTTTA+TGG 0.254563 4_1:-78665059 Msa0574910:CDS
TCTCTTGCTTAAACAGTTCT+TGG 0.261051 4_1:-78665364 Msa0574910:CDS
ACACTAACCCTTTGCCATTC+TGG 0.266477 4_1:+78665422 None:intergenic
GTGCTTGTGCTGCAGGAAAT+AGG 0.284638 4_1:-78665523 Msa0574910:CDS
TGGACTCCTCCTTCTAGGTT+AGG 0.286313 4_1:-78665080 Msa0574910:CDS
CTATGACCCCAAGCAAATTT+AGG 0.308735 4_1:+78664714 None:intergenic
ACCGTCTCAGCTATTTCTAT+TGG 0.311844 4_1:-78664790 Msa0574910:CDS
TGTTTGCTTCGGAAAAGATT+TGG 0.312883 4_1:+78665972 None:intergenic
CAGCCGGTTCTTGCAATATA+GGG 0.313877 4_1:-78666188 Msa0574910:CDS
AAAGTCTTTGAAATCTCAAC+TGG 0.330143 4_1:-78666923 Msa0574910:CDS
ATATTTGGAGGTTCCATTGC+AGG 0.333382 4_1:-78664822 Msa0574910:CDS
GCAGCCGGTTCTTGCAATAT+AGG 0.345908 4_1:-78666189 Msa0574910:intron
ATCCTCCCCGCCCGGCCGAT+GGG 0.346004 4_1:-78665396 Msa0574910:CDS
AGCTCAGAGGCGGCATCCTT+TGG 0.346721 4_1:-78666158 Msa0574910:CDS
TGATGTGTTTGTGCTTGATT+TGG 0.349642 4_1:-78665300 Msa0574910:CDS
GGTTGGAGGGACTAGAGTTT+TGG 0.350009 4_1:-78664682 Msa0574910:CDS
TGTGGCCCCATCGGCCGGGC+GGG 0.357098 4_1:+78665390 None:intergenic
CTACTCTTGAGGCTGTTTGC+TGG 0.369379 4_1:-78665595 Msa0574910:CDS
GTGGAGGATCCTCAATGTTC+CGG 0.370289 4_1:-78664745 Msa0574910:CDS
ATGCAAGTCTCTCTGAAAAC+TGG 0.371445 4_1:+78665926 None:intergenic
CGCCGCCTCTTCCGAGATCT+TGG 0.372949 4_1:-78665238 Msa0574910:CDS
GTTGGGTAGAAGAAAAGTTC+TGG 0.374493 4_1:+78667010 None:intergenic
ACGGCCCCAACCTAACTTCT+TGG 0.384038 4_1:+78665634 None:intergenic
GGAGAGAAATTCCAACTTCA+TGG 0.384945 4_1:-78665100 Msa0574910:CDS
ATGAAGCCCTTGGTCGTAAC+TGG 0.387595 4_1:-78666889 Msa0574910:intron
CACGTCGGTTTCTCTTCGGC+AGG 0.391277 4_1:+78664765 None:intergenic
GGAACCACCTAAATTTGCTT+GGG 0.393741 4_1:-78664721 Msa0574910:CDS
GAGTGTGTGGCCCCATCGGC+CGG 0.399734 4_1:+78665385 None:intergenic
TGGACATACCGGGGAGGAAT+GGG 0.400686 4_1:-78664652 Msa0574910:CDS
TTGGTGTTGGGTGGACATAC+CGG 0.402125 4_1:-78664663 Msa0574910:CDS
TGGAGGATCCTCAATGTTCC+GGG 0.414753 4_1:-78664744 Msa0574910:CDS
TGGTGTTGGGTGGACATACC+GGG 0.415143 4_1:-78664662 Msa0574910:CDS
ACAAAAGATGTTGGTGTTGT+TGG 0.417028 4_1:+78666992 None:intergenic
GGAGTCGTGACACACATAAT+AGG 0.418405 4_1:-78665998 Msa0574910:CDS
TATCCTCCCCGCCCGGCCGA+TGG 0.425086 4_1:-78665397 Msa0574910:CDS
AGCGAGTGCCCTAACCTAGA+AGG 0.425575 4_1:+78665071 None:intergenic
GAACTGATGACCAAGAAGTT+AGG 0.427716 4_1:-78665644 Msa0574910:CDS
CACAGCTCATGCACAATTGA+AGG 0.428020 4_1:-78665215 Msa0574910:CDS
AATTTCAGTGCTTGTGCTGC+AGG 0.430336 4_1:-78665530 Msa0574910:CDS
TTGCAAAGAGTGGACACTTA+AGG 0.435187 4_1:-78665007 Msa0574910:CDS
GCTCGTTCTTTGTCAATTGA+CGG 0.436187 4_1:+78665723 None:intergenic
GCTAAATATTCTCCCAAAAG+TGG 0.437183 4_1:-78665884 Msa0574910:CDS
TCAGCTTTCTGATGAAGTCT+TGG 0.437833 4_1:-78665813 Msa0574910:CDS
AGGACAAAGATTCTCATGTT+TGG 0.440239 4_1:-78665035 Msa0574910:CDS
GTTCAAGTCTATGTTTGCTT+CGG 0.440669 4_1:+78665961 None:intergenic
GGGAGGGTTATTATATTTGG+AGG 0.441072 4_1:-78664834 Msa0574910:CDS
GGACTCCTCCTTCTAGGTTA+GGG 0.442999 4_1:-78665079 Msa0574910:CDS
GGTTCATAATCAAAATCAAA+AGG 0.443531 4_1:-78667125 Msa0574910:CDS
ACTCCATCATCATCATGAAT+TGG 0.445762 4_1:+78666016 None:intergenic
ACTTTGTTGACATAAATGAT+TGG 0.446777 4_1:+78666941 None:intergenic
GTGGCCCCATCGGCCGGGCG+GGG 0.447496 4_1:+78665391 None:intergenic
TAGGTTGGGGCCGTCTGACT+CGG 0.448906 4_1:-78665625 Msa0574910:CDS
GGTCATAGCACTTGTGTGGT+TGG 0.452644 4_1:-78664699 Msa0574910:CDS
TGACAAAGAACGAGCACGTT+AGG 0.454258 4_1:-78665715 Msa0574910:CDS
AGGCTCTAAATTGGTTGTCT+CGG 0.461684 4_1:-78665195 Msa0574910:CDS
GGCTCTAAATTGGTTGTCTC+GGG 0.463717 4_1:-78665194 Msa0574910:CDS
TCCTCCCCGCCCGGCCGATG+GGG 0.463860 4_1:-78665395 Msa0574910:CDS
CCGAGGGATGTTGCATCGAT+TGG 0.463890 4_1:-78665764 Msa0574910:CDS
AATAGGCTTGTATTATTTGG+AGG 0.465306 4_1:-78665506 Msa0574910:CDS
AAGCCTAAGTCTGTTGACTA+AGG 0.465707 4_1:+78666042 None:intergenic
GAACGAGCACGTTAGGAAGA+TGG 0.469272 4_1:-78665708 Msa0574910:CDS
CTTGTATTATTTGGAGGTGA+AGG 0.470299 4_1:-78665500 Msa0574910:CDS
GCCCCATCGGCCGGGCGGGG+AGG 0.477243 4_1:+78665394 None:intergenic
GATGACCAAGAAGTTAGGTT+GGG 0.477266 4_1:-78665639 Msa0574910:CDS
CAAAAGATGTTGGTGTTGTT+GGG 0.483296 4_1:+78666993 None:intergenic
GGGAACCACCTAAATTTGCT+TGG 0.486452 4_1:-78664722 Msa0574910:CDS
CACATCTCTTCGCGCTGCCG+TGG 0.487345 4_1:+78665845 None:intergenic
CTCCCTTAGTCAACAGACTT+AGG 0.488483 4_1:-78666045 Msa0574910:CDS
CATAGCACTTGTGTGGTTGG+AGG 0.488750 4_1:-78664696 Msa0574910:CDS
CCTCCACGTCGGTTTCTCTT+CGG 0.490496 4_1:+78664761 None:intergenic
ATTAGAAGATGTCTTGAAGA+AGG 0.497885 4_1:-78666112 Msa0574910:CDS
GTGGACATACCGGGGAGGAA+TGG 0.501214 4_1:-78664653 Msa0574910:CDS
GTTGGAATTTCTCTCCATGT+AGG 0.501983 4_1:+78665107 None:intergenic
GGATGCCGCCTCTGAGCTCT+AGG 0.505139 4_1:+78666163 None:intergenic
CTTCTGAATTTCAGAAAGGA+TGG 0.505201 4_1:-78666070 Msa0574910:CDS
TTGCAGTAAGCATGCCTTGT+GGG 0.506427 4_1:-78664854 Msa0574910:CDS
TGAAATTCAGAAGTTCCCCT+TGG 0.507034 4_1:+78666080 None:intergenic
GATCCCTATATTGCAAGAAC+CGG 0.508385 4_1:+78666185 None:intergenic
TTTGGTGGATGTGGTAGGCA+AGG 0.511551 4_1:-78665332 Msa0574910:CDS
GAAGGAGGAGTCCATGAAGT+TGG 0.513595 4_1:+78665089 None:intergenic
CAGTAAGCATGCCTTGTGGG+AGG 0.517765 4_1:-78664851 Msa0574910:CDS
ACAAAGATTCTCATGTTTGG+TGG 0.518883 4_1:-78665032 Msa0574910:CDS
GGAACTTCTGAATTTCAGAA+AGG 0.531302 4_1:-78666074 Msa0574910:CDS
CCGACATGGAAGGAAGTCTT+CGG 0.531353 4_1:-78665266 Msa0574910:CDS
AGATGGTTTGTCAAAATGCA+TGG 0.532902 4_1:-78665691 Msa0574910:CDS
CATTCTAGTTGCCTCCATTG+TGG 0.534438 4_1:+78664939 None:intergenic
GCAAATTTAGGTGGTTCCCC+CGG 0.536214 4_1:+78664726 None:intergenic
CAAAGAAGTGACAGGTACAT+TGG 0.538138 4_1:-78665666 Msa0574910:CDS
ATAGCACTTGTGTGGTTGGA+GGG 0.538751 4_1:-78664695 Msa0574910:CDS
AAGAGAGTGTGTGGCCCCAT+CGG 0.538839 4_1:+78665381 None:intergenic
TCGGGCGGCTGCACAGATGC+CGG 0.544982 4_1:-78665176 Msa0574910:CDS
AGGTTGGGGCCGTCTGACTC+GGG 0.545100 4_1:-78665624 Msa0574910:CDS
GTTCATAATCAAAATCAAAA+GGG 0.549520 4_1:-78667124 Msa0574910:CDS
GGACACTTAAGGTTAAGATC+AGG 0.550094 4_1:-78664996 Msa0574910:CDS
CGATTGGTTCTGTTTGCAGG+AGG 0.551211 4_1:-78665748 Msa0574910:CDS
AGGAGTGGATATGCAGCCTA+TGG 0.551520 4_1:-78665480 Msa0574910:CDS
CTAGAATGTAGTGCATTCAC+AGG 0.551583 4_1:-78664924 Msa0574910:CDS
ATCTTACCAGTTACGACCAA+GGG 0.552243 4_1:+78666883 None:intergenic
AAGAAGGTATTGAGTTCCAA+GGG 0.553691 4_1:-78666096 Msa0574910:CDS
TGATGACCAAGAAGTTAGGT+TGG 0.554354 4_1:-78665640 Msa0574910:CDS
TATCGTGCTCATGAAGCCCT+TGG 0.555109 4_1:-78666899 Msa0574910:CDS
TCAGAGGCGGCATCCTTTGG+TGG 0.557577 4_1:-78666155 Msa0574910:CDS
CATAATCAAAATCAAAAGGG+TGG 0.561242 4_1:-78667121 Msa0574910:CDS
AAAAGTTACAGTTGGAGGCG+GGG 0.563457 4_1:-78665570 Msa0574910:CDS
AGTCTCTCTGAAAACTGGAT+AGG 0.564618 4_1:+78665931 None:intergenic
GATGGTTTGTCAAAATGCAT+GGG 0.565106 4_1:-78665690 Msa0574910:CDS
ACGCCAATTCATGATGATGA+TGG 0.567655 4_1:-78666019 Msa0574910:CDS
CTGTGCCAAGATCTCGGAAG+AGG 0.567792 4_1:+78665233 None:intergenic
CTAAGAATCCAGAATGGCAA+AGG 0.567914 4_1:-78665430 Msa0574910:CDS
ACGTCGGTTTCTCTTCGGCA+GGG 0.569618 4_1:+78664766 None:intergenic
AGCCTAAGTCTGTTGACTAA+GGG 0.572540 4_1:+78666043 None:intergenic
CTAATCTCAGACACAACGAC+TGG 0.572852 4_1:+78666130 None:intergenic
AGTGTGTGGCCCCATCGGCC+GGG 0.576130 4_1:+78665386 None:intergenic
TGCTCAACAGCCGACATGGA+AGG 0.576956 4_1:-78665276 Msa0574910:CDS
CCGAAGACTTCCTTCCATGT+CGG 0.579808 4_1:+78665266 None:intergenic
AGAACAAAAGTATCATCCAT+AGG 0.580180 4_1:+78665464 None:intergenic
TCCAATAGAAATAGCTGAGA+CGG 0.580190 4_1:+78664789 None:intergenic
GCATGGGGCAAAGAAGTGAC+AGG 0.582415 4_1:-78665674 Msa0574910:CDS
ATAATCAAAATCAAAAGGGT+GGG 0.584258 4_1:-78667120 Msa0574910:CDS
CCAATCGATGCAACATCCCT+CGG 0.585601 4_1:+78665764 None:intergenic
TGCCAAGATCTCGGAAGAGG+CGG 0.585827 4_1:+78665236 None:intergenic
AGTAAGCATGCCTTGTGGGA+GGG 0.586759 4_1:-78664850 Msa0574910:CDS
CGGTGAATGAAGACCTGCAA+TGG 0.588794 4_1:+78664809 None:intergenic
GTGTGGCCCCATCGGCCGGG+CGG 0.590319 4_1:+78665389 None:intergenic
CATGAGCTGTGCCAAGATCT+CGG 0.590774 4_1:+78665227 None:intergenic
TAAGAATCCAGAATGGCAAA+GGG 0.592387 4_1:-78665429 Msa0574910:CDS
GAAAATTATTGTACACTCCA+CGG 0.593713 4_1:-78665862 Msa0574910:CDS
TGAGTTGCATGAGTTGTGCT+TGG 0.594676 4_1:-78664622 Msa0574910:CDS
TGGATGCTCAACAGCCGACA+TGG 0.596002 4_1:-78665280 Msa0574910:CDS
GGTGTTGGGTGGACATACCG+GGG 0.599502 4_1:-78664661 Msa0574910:CDS
TTTGGTGGACTTGCAAAGAG+TGG 0.599541 4_1:-78665017 Msa0574910:CDS
ATTCAGCACCCATTCCTCCC+CGG 0.599838 4_1:+78664644 None:intergenic
TAGTAAGCTCCCGAGTCAGA+CGG 0.604022 4_1:+78665615 None:intergenic
ACATGATCTAGTCGAGGAGG+AGG 0.604406 4_1:+78664876 None:intergenic
TCTAAATTGGTTGTCTCGGG+CGG 0.604939 4_1:-78665191 Msa0574910:CDS
GAAGAAGGTATTGAGTTCCA+AGG 0.605857 4_1:-78666097 Msa0574910:CDS
ATTATTTGGAGGTGAAGGAG+TGG 0.606129 4_1:-78665495 Msa0574910:CDS
ACTCGCTCTCAGTTTATGGT+AGG 0.607187 4_1:-78665055 Msa0574910:CDS
ATGACCAAGAAGTTAGGTTG+GGG 0.608700 4_1:-78665638 Msa0574910:CDS
TCGGGAGCTTACTACTCTTG+AGG 0.615782 4_1:-78665606 Msa0574910:CDS
GCACTGAAATTGCAGCGTGA+AGG 0.616623 4_1:+78665542 None:intergenic
CTTAAGGTTAAGATCAGGTG+AGG 0.617307 4_1:-78664991 Msa0574910:CDS
TTGGGGTCATAGCACTTGTG+TGG 0.623428 4_1:-78664703 Msa0574910:CDS
AGTGTGATATCCTCCCCGCC+CGG 0.623636 4_1:-78665404 Msa0574910:CDS
TCTGATACAACAAAAGATGT+TGG 0.624603 4_1:+78666983 None:intergenic
GAGTGCCCTAACCTAGAAGG+AGG 0.629150 4_1:+78665074 None:intergenic
TGTGTCACTAAGAAGTACTC+CGG 0.630445 4_1:+78665157 None:intergenic
AATCTTACCAGTTACGACCA+AGG 0.632469 4_1:+78666882 None:intergenic
TGTTTAAGCAAGAGAGTGTG+TGG 0.633821 4_1:+78665372 None:intergenic
TTGATGCTAAGAATCCAGAA+TGG 0.634155 4_1:-78665436 Msa0574910:CDS
GAACCACCTAAATTTGCTTG+GGG 0.636271 4_1:-78664720 Msa0574910:CDS
GGAGGATCCTCAATGTTCCG+GGG 0.639537 4_1:-78664743 Msa0574910:CDS
TGACCCCAAGCAAATTTAGG+TGG 0.642462 4_1:+78664717 None:intergenic
ATTGTCACGCTTGACACCGA+GGG 0.643189 4_1:-78665780 Msa0574910:CDS
TCACAATAGATAATCCTACA+TGG 0.646440 4_1:-78665121 Msa0574910:CDS
CCGAAGAGAAACCGACGTGG+AGG 0.652010 4_1:-78664761 Msa0574910:CDS
ATGTAGGATTATCTATTGTG+AGG 0.656684 4_1:+78665123 None:intergenic
AAGCTGAACAACCACAATGG+AGG 0.657091 4_1:-78664950 Msa0574910:CDS
AATATAATAACCCTCCCACA+AGG 0.660973 4_1:+78664840 None:intergenic
CGGCAGCGCGAAGAGATGTG+TGG 0.661003 4_1:-78665842 Msa0574910:CDS
ACAACGACTGGATCCACCAA+AGG 0.667336 4_1:+78666142 None:intergenic
GAGGATCCTCAATGTTCCGG+GGG 0.669777 4_1:-78664742 Msa0574910:CDS
ATGGTTTGTCAAAATGCATG+GGG 0.673308 4_1:-78665689 Msa0574910:CDS
TAGAAGCTGAACAACCACAA+TGG 0.675759 4_1:-78664953 Msa0574910:CDS
AAGTCTTTGAAATCTCAACT+GGG 0.680191 4_1:-78666922 Msa0574910:CDS
ACTGCAACATGATCTAGTCG+AGG 0.685428 4_1:+78664870 None:intergenic
GCAACATGATCTAGTCGAGG+AGG 0.692964 4_1:+78664873 None:intergenic
GGGATCCTAGAGCTCAGAGG+CGG 0.695636 4_1:-78666168 Msa0574910:CDS
TGAAAACTGGATAGGAAACA+CGG 0.696786 4_1:+78665939 None:intergenic
GTTGCAGTAAGCATGCCTTG+TGG 0.698959 4_1:-78664855 Msa0574910:CDS
CTGCCGAAGAGAAACCGACG+TGG 0.709608 4_1:-78664764 Msa0574910:CDS
TATTGTCACGCTTGACACCG+AGG 0.711160 4_1:-78665781 Msa0574910:CDS
ATAGGGATCCTAGAGCTCAG+AGG 0.719677 4_1:-78666171 Msa0574910:CDS
GTTGGGTGGACATACCGGGG+AGG 0.725055 4_1:-78664658 Msa0574910:CDS
AGAAGGTATTGAGTTCCAAG+GGG 0.731475 4_1:-78666095 Msa0574910:CDS
ACATTGAGGATCCTCCACGT+CGG 0.754895 4_1:+78664750 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATCTTTTTTATTGATTTA+AGG - chr4_1:78664972-78664991 Msa0574910:CDS 10.0%
!! AAAAATAAAATTTGAGAAAT+AGG + chr4_1:78665253-78665272 None:intergenic 10.0%
!! TTATTTATTATCCAATAAGA+AGG + chr4_1:78665210-78665229 None:intergenic 15.0%
!! AAAGAAATATCTTGTAAAAA+AGG + chr4_1:78665520-78665539 None:intergenic 15.0%
!!! TTCTTTTAGATATTTTGATT+TGG - chr4_1:78665534-78665553 Msa0574910:CDS 15.0%
!! GTTCATAATCAAAATCAAAA+GGG - chr4_1:78664672-78664691 Msa0574910:CDS 20.0%
!!! CTTTTTTATTGATTTAAGGT+TGG - chr4_1:78664976-78664995 Msa0574910:CDS 20.0%
!!! TTTTTTAGTTTAAGGAAAGT+GGG + chr4_1:78665043-78665062 None:intergenic 20.0%
!!! TTTTTTTAGTTTAAGGAAAG+TGG + chr4_1:78665044-78665063 None:intergenic 20.0%
!!! GGGTTTTTTTTTTTAGTTTA+AGG + chr4_1:78665051-78665070 None:intergenic 20.0%
!!! AAAAAAACCCTTTTATCAAA+CGG - chr4_1:78665061-78665080 Msa0574910:CDS 20.0%
!! TTTGCAAAATGAAACAAAAT+TGG + chr4_1:78665139-78665158 None:intergenic 20.0%
!!! AAGTTTATTTTCCATTCTAT+TGG - chr4_1:78665289-78665308 Msa0574910:CDS 20.0%
!! AAAATGTTAAACCAATAGAA+TGG + chr4_1:78665303-78665322 None:intergenic 20.0%
!! AGTACTTTCCATAATAATTA+AGG - chr4_1:78665360-78665379 Msa0574910:CDS 20.0%
!! TTGATGAACCTTAATTATTA+TGG + chr4_1:78665371-78665390 None:intergenic 20.0%
!! AATACCAAATATAACCAAAA+AGG + chr4_1:78665491-78665510 None:intergenic 20.0%
!!! TACAATAATTTTCCACTTTT+GGG + chr4_1:78665927-78665946 None:intergenic 20.0%
! GGTTCATAATCAAAATCAAA+AGG - chr4_1:78664671-78664690 Msa0574910:CDS 25.0%
! ATAATCAAAATCAAAAGGGT+GGG - chr4_1:78664676-78664695 Msa0574910:CDS 25.0%
!!! AAGAAAAGTTCTGGTTTTAA+TGG + chr4_1:78664780-78664799 None:intergenic 25.0%
! ACTTTGTTGACATAAATGAT+TGG + chr4_1:78664858-78664877 None:intergenic 25.0%
!! TTCTTGCATCATAATTTTGT+TGG - chr4_1:78664946-78664965 Msa0574910:CDS 25.0%
!! TCTTGCATCATAATTTTGTT+GGG - chr4_1:78664947-78664966 Msa0574910:CDS 25.0%
!! ATTTTCACCGTTTGATAAAA+GGG + chr4_1:78665071-78665090 None:intergenic 25.0%
!! GAATGGATTCTATAAAAATG+TGG + chr4_1:78665162-78665181 None:intergenic 25.0%
! GGAATCAAAATTAGAAAGAA+TGG + chr4_1:78665179-78665198 None:intergenic 25.0%
!!! AGAAATTCTAAAGCAATTAG+AGG + chr4_1:78665580-78665599 None:intergenic 25.0%
!! GTACAATAATTTTCCACTTT+TGG + chr4_1:78665928-78665947 None:intergenic 25.0%
TAAAAACGAAGATGAAGAAG+AGG - chr4_1:78664650-78664669 Msa0574910:CDS 30.0%
CATAATCAAAATCAAAAGGG+TGG - chr4_1:78664675-78664694 Msa0574910:CDS 30.0%
TCTGATACAACAAAAGATGT+TGG + chr4_1:78664816-78664835 None:intergenic 30.0%
!! AAAGTCTTTGAAATCTCAAC+TGG - chr4_1:78664873-78664892 Msa0574910:CDS 30.0%
!! AAGTCTTTGAAATCTCAACT+GGG - chr4_1:78664874-78664893 Msa0574910:CDS 30.0%
! CTTGCATCATAATTTTGTTG+GGG - chr4_1:78664948-78664967 Msa0574910:CDS 30.0%
! CATTTTCACCGTTTGATAAA+AGG + chr4_1:78665072-78665091 None:intergenic 30.0%
TAGTATAGATCTGAAAGGAA+TGG + chr4_1:78665098-78665117 None:intergenic 30.0%
CAACATAGTATAGATCTGAA+AGG + chr4_1:78665103-78665122 None:intergenic 30.0%
!! GGTTTAACATTTTGACAACA+TGG - chr4_1:78665310-78665329 Msa0574910:CDS 30.0%
!! ATTTTGACAACATGGTTACT+TGG - chr4_1:78665318-78665337 Msa0574910:CDS 30.0%
ACTCTCATAGAATCAATGAT+AGG - chr4_1:78665458-78665477 Msa0574910:CDS 30.0%
CTCTCATAGAATCAATGATA+GGG - chr4_1:78665459-78665478 Msa0574910:CDS 30.0%
!!! CTGTCCTTTTTGGTTATATT+TGG - chr4_1:78665484-78665503 Msa0574910:CDS 30.0%
ATTAGAAGATGTCTTGAAGA+AGG - chr4_1:78665684-78665703 Msa0574910:CDS 30.0%
GAAAATTATTGTACACTCCA+CGG - chr4_1:78665934-78665953 Msa0574910:CDS 30.0%
GGAAATAGGCTTGTATTATT+TGG - chr4_1:78666287-78666306 Msa0574910:intron 30.0%
AATAGGCTTGTATTATTTGG+AGG - chr4_1:78666290-78666309 Msa0574910:intron 30.0%
!! AGAACAAAAGTATCATCCAT+AGG + chr4_1:78666335-78666354 None:intergenic 30.0%
ATGTAGGATTATCTATTGTG+AGG + chr4_1:78666676-78666695 None:intergenic 30.0%
TCACAATAGATAATCCTACA+TGG - chr4_1:78666675-78666694 Msa0574910:intron 30.0%
!! CAAAAGATGTTGGTGTTGTT+GGG + chr4_1:78664806-78664825 None:intergenic 35.0%
!! ACAAAAGATGTTGGTGTTGT+TGG + chr4_1:78664807-78664826 None:intergenic 35.0%
ATCCAATAAGAAGGAAGCTA+GGG + chr4_1:78665201-78665220 None:intergenic 35.0%
TATCCAATAAGAAGGAAGCT+AGG + chr4_1:78665202-78665221 None:intergenic 35.0%
!! GAATTTCTTTTGTTTGCAGC+CGG - chr4_1:78665592-78665611 Msa0574910:CDS 35.0%
!! AAGAAGGTATTGAGTTCCAA+GGG - chr4_1:78665700-78665719 Msa0574910:CDS 35.0%
GGAACTTCTGAATTTCAGAA+AGG - chr4_1:78665722-78665741 Msa0574910:CDS 35.0%
CTTCTGAATTTCAGAAAGGA+TGG - chr4_1:78665726-78665745 Msa0574910:CDS 35.0%
ACTCCATCATCATCATGAAT+TGG + chr4_1:78665783-78665802 None:intergenic 35.0%
TGTTTGCTTCGGAAAAGATT+TGG + chr4_1:78665827-78665846 None:intergenic 35.0%
GTTCAAGTCTATGTTTGCTT+CGG + chr4_1:78665838-78665857 None:intergenic 35.0%
TGAAAACTGGATAGGAAACA+CGG + chr4_1:78665860-78665879 None:intergenic 35.0%
GCTAAATATTCTCCCAAAAG+TGG - chr4_1:78665912-78665931 Msa0574910:CDS 35.0%
! AGATGGTTTGTCAAAATGCA+TGG - chr4_1:78666105-78666124 Msa0574910:CDS 35.0%
! GATGGTTTGTCAAAATGCAT+GGG - chr4_1:78666106-78666125 Msa0574910:CDS 35.0%
! ATGGTTTGTCAAAATGCATG+GGG - chr4_1:78666107-78666126 Msa0574910:CDS 35.0%
TGCTGGAAAAAAGTTACAGT+TGG - chr4_1:78666218-78666237 Msa0574910:intron 35.0%
TGGAAAAAAGTTACAGTTGG+AGG - chr4_1:78666221-78666240 Msa0574910:intron 35.0%
AAAAAAGTTACAGTTGGAGG+CGG - chr4_1:78666224-78666243 Msa0574910:intron 35.0%
CTTGTATTATTTGGAGGTGA+AGG - chr4_1:78666296-78666315 Msa0574910:intron 35.0%
TTGATGCTAAGAATCCAGAA+TGG - chr4_1:78666360-78666379 Msa0574910:intron 35.0%
TAAGAATCCAGAATGGCAAA+GGG - chr4_1:78666367-78666386 Msa0574910:intron 35.0%
TCTCTTGCTTAAACAGTTCT+TGG - chr4_1:78666432-78666451 Msa0574910:intron 35.0%
!! AGTTCTTGGCTAGTTGTTTT+TGG - chr4_1:78666446-78666465 Msa0574910:intron 35.0%
TGATGTGTTTGTGCTTGATT+TGG - chr4_1:78666496-78666515 Msa0574910:intron 35.0%
!! CACAATTGAAGGCTCTAAAT+TGG - chr4_1:78666592-78666611 Msa0574910:intron 35.0%
AGGACAAAGATTCTCATGTT+TGG - chr4_1:78666761-78666780 Msa0574910:intron 35.0%
ACAAAGATTCTCATGTTTGG+TGG - chr4_1:78666764-78666783 Msa0574910:intron 35.0%
AATATAATAACCCTCCCACA+AGG + chr4_1:78666959-78666978 None:intergenic 35.0%
TGTGGGAGGGTTATTATATT+TGG - chr4_1:78666959-78666978 Msa0574910:CDS 35.0%
TCCAATAGAAATAGCTGAGA+CGG + chr4_1:78667010-78667029 None:intergenic 35.0%
GTTGGGTAGAAGAAAAGTTC+TGG + chr4_1:78664789-78664808 None:intergenic 40.0%
ATCTTACCAGTTACGACCAA+GGG + chr4_1:78664916-78664935 None:intergenic 40.0%
AATCTTACCAGTTACGACCA+AGG + chr4_1:78664917-78664936 None:intergenic 40.0%
TCCAATAAGAAGGAAGCTAG+GGG + chr4_1:78665200-78665219 None:intergenic 40.0%
! TGATAGGGAACTGTCCTTTT+TGG - chr4_1:78665474-78665493 Msa0574910:CDS 40.0%
GATCCCTATATTGCAAGAAC+CGG + chr4_1:78665614-78665633 None:intergenic 40.0%
!! GAAGAAGGTATTGAGTTCCA+AGG - chr4_1:78665699-78665718 Msa0574910:CDS 40.0%
!! AGAAGGTATTGAGTTCCAAG+GGG - chr4_1:78665701-78665720 Msa0574910:CDS 40.0%
TGAAATTCAGAAGTTCCCCT+TGG + chr4_1:78665719-78665738 None:intergenic 40.0%
! AGCCTAAGTCTGTTGACTAA+GGG + chr4_1:78665756-78665775 None:intergenic 40.0%
! AAGCCTAAGTCTGTTGACTA+AGG + chr4_1:78665757-78665776 None:intergenic 40.0%
! ACGCCAATTCATGATGATGA+TGG - chr4_1:78665777-78665796 Msa0574910:CDS 40.0%
! AGTCTCTCTGAAAACTGGAT+AGG + chr4_1:78665868-78665887 None:intergenic 40.0%
! ATGCAAGTCTCTCTGAAAAC+TGG + chr4_1:78665873-78665892 None:intergenic 40.0%
TCAGCTTTCTGATGAAGTCT+TGG - chr4_1:78665983-78666002 Msa0574910:CDS 40.0%
GCTCGTTCTTTGTCAATTGA+CGG + chr4_1:78666076-78666095 None:intergenic 40.0%
CAAAGAAGTGACAGGTACAT+TGG - chr4_1:78666130-78666149 Msa0574910:CDS 40.0%
GAACTGATGACCAAGAAGTT+AGG - chr4_1:78666152-78666171 Msa0574910:CDS 40.0%
TGATGACCAAGAAGTTAGGT+TGG - chr4_1:78666156-78666175 Msa0574910:CDS 40.0%
GATGACCAAGAAGTTAGGTT+GGG - chr4_1:78666157-78666176 Msa0574910:CDS 40.0%
! ATGACCAAGAAGTTAGGTTG+GGG - chr4_1:78666158-78666177 Msa0574910:CDS 40.0%
AAAAAGTTACAGTTGGAGGC+GGG - chr4_1:78666225-78666244 Msa0574910:intron 40.0%
ATTATTTGGAGGTGAAGGAG+TGG - chr4_1:78666301-78666320 Msa0574910:intron 40.0%
CTAAGAATCCAGAATGGCAA+AGG - chr4_1:78666366-78666385 Msa0574910:intron 40.0%
! TGTTTAAGCAAGAGAGTGTG+TGG + chr4_1:78666427-78666446 None:intergenic 40.0%
!!! TCTTGGCTAGTTGTTTTTGG+TGG - chr4_1:78666449-78666468 Msa0574910:intron 40.0%
!!! CTAGTTGTTTTTGGTGGATG+TGG - chr4_1:78666455-78666474 Msa0574910:intron 40.0%
!!! TTGTTTTTGGTGGATGTGGT+AGG - chr4_1:78666459-78666478 Msa0574910:intron 40.0%
!! AGGCTCTAAATTGGTTGTCT+CGG - chr4_1:78666601-78666620 Msa0574910:intron 40.0%
!! TGTGTCACTAAGAAGTACTC+CGG + chr4_1:78666642-78666661 None:intergenic 40.0%
GTTGGAATTTCTCTCCATGT+AGG + chr4_1:78666692-78666711 None:intergenic 40.0%
GGAGAGAAATTCCAACTTCA+TGG - chr4_1:78666696-78666715 Msa0574910:intron 40.0%
TTGCAAAGAGTGGACACTTA+AGG - chr4_1:78666789-78666808 Msa0574910:intron 40.0%
GGACACTTAAGGTTAAGATC+AGG - chr4_1:78666800-78666819 Msa0574910:intron 40.0%
CTTAAGGTTAAGATCAGGTG+AGG - chr4_1:78666805-78666824 Msa0574910:intron 40.0%
TAGAAGCTGAACAACCACAA+TGG - chr4_1:78666843-78666862 Msa0574910:intron 40.0%
CTAGAATGTAGTGCATTCAC+AGG - chr4_1:78666872-78666891 Msa0574910:intron 40.0%
GGGAGGGTTATTATATTTGG+AGG - chr4_1:78666962-78666981 Msa0574910:CDS 40.0%
ATATTTGGAGGTTCCATTGC+AGG - chr4_1:78666974-78666993 Msa0574910:CDS 40.0%
!! ACCGTCTCAGCTATTTCTAT+TGG - chr4_1:78667006-78667025 Msa0574910:CDS 40.0%
! GGAACCACCTAAATTTGCTT+GGG - chr4_1:78667075-78667094 Msa0574910:CDS 40.0%
! GAACCACCTAAATTTGCTTG+GGG - chr4_1:78667076-78667095 Msa0574910:CDS 40.0%
CTATGACCCCAAGCAAATTT+AGG + chr4_1:78667085-78667104 None:intergenic 40.0%
TCCCCTAGCTTCCTTCTTAT+TGG - chr4_1:78665196-78665215 Msa0574910:CDS 45.0%
! CAGCCGGTTCTTGCAATATA+GGG - chr4_1:78665608-78665627 Msa0574910:CDS 45.0%
CTAATCTCAGACACAACGAC+TGG + chr4_1:78665669-78665688 None:intergenic 45.0%
CTCCCTTAGTCAACAGACTT+AGG - chr4_1:78665751-78665770 Msa0574910:CDS 45.0%
GGAGTCGTGACACACATAAT+AGG - chr4_1:78665798-78665817 Msa0574910:CDS 45.0%
!! CATCGATTGGTTCTGTTTGC+AGG - chr4_1:78666045-78666064 Msa0574910:CDS 45.0%
TGACAAAGAACGAGCACGTT+AGG - chr4_1:78666081-78666100 Msa0574910:CDS 45.0%
AAAAGTTACAGTTGGAGGCG+GGG - chr4_1:78666226-78666245 Msa0574910:intron 45.0%
AATTTCAGTGCTTGTGCTGC+AGG - chr4_1:78666266-78666285 Msa0574910:intron 45.0%
ACACTAACCCTTTGCCATTC+TGG + chr4_1:78666377-78666396 None:intergenic 45.0%
CACAGCTCATGCACAATTGA+AGG - chr4_1:78666581-78666600 Msa0574910:intron 45.0%
!! GGCTCTAAATTGGTTGTCTC+GGG - chr4_1:78666602-78666621 Msa0574910:intron 45.0%
TCTAAATTGGTTGTCTCGGG+CGG - chr4_1:78666605-78666624 Msa0574910:intron 45.0%
ACTCGCTCTCAGTTTATGGT+AGG - chr4_1:78666741-78666760 Msa0574910:intron 45.0%
!! TTTGGTGGACTTGCAAAGAG+TGG - chr4_1:78666779-78666798 Msa0574910:intron 45.0%
AAGCTGAACAACCACAATGG+AGG - chr4_1:78666846-78666865 Msa0574910:intron 45.0%
! CATTCTAGTTGCCTCCATTG+TGG + chr4_1:78666860-78666879 None:intergenic 45.0%
ACTGCAACATGATCTAGTCG+AGG + chr4_1:78666929-78666948 None:intergenic 45.0%
TTGCAGTAAGCATGCCTTGT+GGG - chr4_1:78666942-78666961 Msa0574910:CDS 45.0%
! GGGAACCACCTAAATTTGCT+TGG - chr4_1:78667074-78667093 Msa0574910:CDS 45.0%
TGACCCCAAGCAAATTTAGG+TGG + chr4_1:78667082-78667101 None:intergenic 45.0%
ATAGCACTTGTGTGGTTGGA+GGG - chr4_1:78667101-78667120 Msa0574910:CDS 45.0%
!! AGGGACTAGAGTTTTGGTGT+TGG - chr4_1:78667120-78667139 Msa0574910:CDS 45.0%
!!! GGGACTAGAGTTTTGGTGTT+GGG - chr4_1:78667121-78667140 Msa0574910:CDS 45.0%
!!! ACTAGAGTTTTGGTGTTGGG+TGG - chr4_1:78667124-78667143 Msa0574910:CDS 45.0%
TGAGTTGCATGAGTTGTGCT+TGG - chr4_1:78667174-78667193 Msa0574910:exon 45.0%
GAGAGAGAGAGAGAGAGACA+TGG - chr4_1:78664614-78664633 Msa0574910:CDS 50.0%
GAGAGAGAGAGACATGGCTA+TGG - chr4_1:78664620-78664639 Msa0574910:CDS 50.0%
TATCGTGCTCATGAAGCCCT+TGG - chr4_1:78664897-78664916 Msa0574910:CDS 50.0%
ATGAAGCCCTTGGTCGTAAC+TGG - chr4_1:78664907-78664926 Msa0574910:CDS 50.0%
! GCAGCCGGTTCTTGCAATAT+AGG - chr4_1:78665607-78665626 Msa0574910:CDS 50.0%
ATAGGGATCCTAGAGCTCAG+AGG - chr4_1:78665625-78665644 Msa0574910:CDS 50.0%
ACAACGACTGGATCCACCAA+AGG + chr4_1:78665657-78665676 None:intergenic 50.0%
TATTGTCACGCTTGACACCG+AGG - chr4_1:78666015-78666034 Msa0574910:CDS 50.0%
ATTGTCACGCTTGACACCGA+GGG - chr4_1:78666016-78666035 Msa0574910:CDS 50.0%
CCAATCGATGCAACATCCCT+CGG + chr4_1:78666035-78666054 None:intergenic 50.0%
!! CGATTGGTTCTGTTTGCAGG+AGG - chr4_1:78666048-78666067 Msa0574910:CDS 50.0%
GAACGAGCACGTTAGGAAGA+TGG - chr4_1:78666088-78666107 Msa0574910:CDS 50.0%
TAGTAAGCTCCCGAGTCAGA+CGG + chr4_1:78666184-78666203 None:intergenic 50.0%
TCGGGAGCTTACTACTCTTG+AGG - chr4_1:78666190-78666209 Msa0574910:intron 50.0%
CTACTCTTGAGGCTGTTTGC+TGG - chr4_1:78666201-78666220 Msa0574910:intron 50.0%
GCACTGAAATTGCAGCGTGA+AGG + chr4_1:78666257-78666276 None:intergenic 50.0%
GTGCTTGTGCTGCAGGAAAT+AGG - chr4_1:78666273-78666292 Msa0574910:intron 50.0%
AGGAGTGGATATGCAGCCTA+TGG - chr4_1:78666316-78666335 Msa0574910:intron 50.0%
! TTTGGTGGATGTGGTAGGCA+AGG - chr4_1:78666464-78666483 Msa0574910:intron 50.0%
CCGAAGACTTCCTTCCATGT+CGG + chr4_1:78666533-78666552 None:intergenic 50.0%
CCGACATGGAAGGAAGTCTT+CGG - chr4_1:78666530-78666549 Msa0574910:intron 50.0%
CATGAGCTGTGCCAAGATCT+CGG + chr4_1:78666572-78666591 None:intergenic 50.0%
GAAGGAGGAGTCCATGAAGT+TGG + chr4_1:78666710-78666729 None:intergenic 50.0%
CTTCATGGACTCCTCCTTCT+AGG - chr4_1:78666711-78666730 Msa0574910:intron 50.0%
TGGACTCCTCCTTCTAGGTT+AGG - chr4_1:78666716-78666735 Msa0574910:intron 50.0%
GGACTCCTCCTTCTAGGTTA+GGG - chr4_1:78666717-78666736 Msa0574910:intron 50.0%
ACATGATCTAGTCGAGGAGG+AGG + chr4_1:78666923-78666942 None:intergenic 50.0%
GCAACATGATCTAGTCGAGG+AGG + chr4_1:78666926-78666945 None:intergenic 50.0%
GTTGCAGTAAGCATGCCTTG+TGG - chr4_1:78666941-78666960 Msa0574910:CDS 50.0%
AGTAAGCATGCCTTGTGGGA+GGG - chr4_1:78666946-78666965 Msa0574910:CDS 50.0%
CGGTGAATGAAGACCTGCAA+TGG + chr4_1:78666990-78667009 None:intergenic 50.0%
ACATTGAGGATCCTCCACGT+CGG + chr4_1:78667049-78667068 None:intergenic 50.0%
GTGGAGGATCCTCAATGTTC+CGG - chr4_1:78667051-78667070 Msa0574910:CDS 50.0%
TGGAGGATCCTCAATGTTCC+GGG - chr4_1:78667052-78667071 Msa0574910:CDS 50.0%
GCAAATTTAGGTGGTTCCCC+CGG + chr4_1:78667073-78667092 None:intergenic 50.0%
TTGGGGTCATAGCACTTGTG+TGG - chr4_1:78667093-78667112 Msa0574910:CDS 50.0%
GGTCATAGCACTTGTGTGGT+TGG - chr4_1:78667097-78667116 Msa0574910:CDS 50.0%
CATAGCACTTGTGTGGTTGG+AGG - chr4_1:78667100-78667119 Msa0574910:CDS 50.0%
! GGTTGGAGGGACTAGAGTTT+TGG - chr4_1:78667114-78667133 Msa0574910:CDS 50.0%
!! TTGGTGTTGGGTGGACATAC+CGG - chr4_1:78667133-78667152 Msa0574910:CDS 50.0%
! CCGAGGGATGTTGCATCGAT+TGG - chr4_1:78666032-78666051 Msa0574910:CDS 55.0%
GCATGGGGCAAAGAAGTGAC+AGG - chr4_1:78666122-78666141 Msa0574910:CDS 55.0%
ACGGCCCCAACCTAACTTCT+TGG + chr4_1:78666165-78666184 None:intergenic 55.0%
! AAGAGAGTGTGTGGCCCCAT+CGG + chr4_1:78666418-78666437 None:intergenic 55.0%
TGGATGCTCAACAGCCGACA+TGG - chr4_1:78666516-78666535 Msa0574910:intron 55.0%
TGCTCAACAGCCGACATGGA+AGG - chr4_1:78666520-78666539 Msa0574910:intron 55.0%
TGCCAAGATCTCGGAAGAGG+CGG + chr4_1:78666563-78666582 None:intergenic 55.0%
CTGTGCCAAGATCTCGGAAG+AGG + chr4_1:78666566-78666585 None:intergenic 55.0%
GAGTGCCCTAACCTAGAAGG+AGG + chr4_1:78666725-78666744 None:intergenic 55.0%
AGCGAGTGCCCTAACCTAGA+AGG + chr4_1:78666728-78666747 None:intergenic 55.0%
GGGCACTCGCTCTCAGTTTA+TGG - chr4_1:78666737-78666756 Msa0574910:intron 55.0%
CAGTAAGCATGCCTTGTGGG+AGG - chr4_1:78666945-78666964 Msa0574910:CDS 55.0%
!! ACGTCGGTTTCTCTTCGGCA+GGG + chr4_1:78667033-78667052 None:intergenic 55.0%
!! CCTCCACGTCGGTTTCTCTT+CGG + chr4_1:78667038-78667057 None:intergenic 55.0%
GGAGGATCCTCAATGTTCCG+GGG - chr4_1:78667053-78667072 Msa0574910:CDS 55.0%
GAGGATCCTCAATGTTCCGG+GGG - chr4_1:78667054-78667073 Msa0574910:CDS 55.0%
! TGGTGTTGGGTGGACATACC+GGG - chr4_1:78667134-78667153 Msa0574910:CDS 55.0%
TGGACATACCGGGGAGGAAT+GGG - chr4_1:78667144-78667163 Msa0574910:CDS 55.0%
ATTCAGCACCCATTCCTCCC+CGG + chr4_1:78667155-78667174 None:intergenic 55.0%
GGGATCCTAGAGCTCAGAGG+CGG - chr4_1:78665628-78665647 Msa0574910:CDS 60.0%
AGCTCAGAGGCGGCATCCTT+TGG - chr4_1:78665638-78665657 Msa0574910:CDS 60.0%
TCAGAGGCGGCATCCTTTGG+TGG - chr4_1:78665641-78665660 Msa0574910:CDS 60.0%
! TAGGTTGGGGCCGTCTGACT+CGG - chr4_1:78666171-78666190 Msa0574910:CDS 60.0%
AGTGTGATATCCTCCCCGCC+CGG - chr4_1:78666392-78666411 Msa0574910:intron 60.0%
!! CACGTCGGTTTCTCTTCGGC+AGG + chr4_1:78667034-78667053 None:intergenic 60.0%
CTGCCGAAGAGAAACCGACG+TGG - chr4_1:78667032-78667051 Msa0574910:CDS 60.0%
CCGAAGAGAAACCGACGTGG+AGG - chr4_1:78667035-78667054 Msa0574910:CDS 60.0%
GTGGTTCCCCCGGAACATTG+AGG + chr4_1:78667063-78667082 None:intergenic 60.0%
! GGTGTTGGGTGGACATACCG+GGG - chr4_1:78667135-78667154 Msa0574910:CDS 60.0%
GTGGACATACCGGGGAGGAA+TGG - chr4_1:78667143-78667162 Msa0574910:CDS 60.0%
GGATGCCGCCTCTGAGCTCT+AGG + chr4_1:78665636-78665655 None:intergenic 65.0%
CACATCTCTTCGCGCTGCCG+TGG + chr4_1:78665954-78665973 None:intergenic 65.0%
CGGCAGCGCGAAGAGATGTG+TGG - chr4_1:78665954-78665973 Msa0574910:CDS 65.0%
AGGTTGGGGCCGTCTGACTC+GGG - chr4_1:78666172-78666191 Msa0574910:CDS 65.0%
CGCCGCCTCTTCCGAGATCT+TGG - chr4_1:78666558-78666577 Msa0574910:intron 65.0%
GTTGGGTGGACATACCGGGG+AGG - chr4_1:78667138-78667157 Msa0574910:CDS 65.0%
AGTGTGTGGCCCCATCGGCC+GGG + chr4_1:78666413-78666432 None:intergenic 70.0%
GAGTGTGTGGCCCCATCGGC+CGG + chr4_1:78666414-78666433 None:intergenic 70.0%
TCGGGCGGCTGCACAGATGC+CGG - chr4_1:78666620-78666639 Msa0574910:intron 70.0%
TATCCTCCCCGCCCGGCCGA+TGG - chr4_1:78666399-78666418 Msa0574910:intron 75.0%
ATCCTCCCCGCCCGGCCGAT+GGG - chr4_1:78666400-78666419 Msa0574910:intron 75.0%
! TCCTCCCCGCCCGGCCGATG+GGG - chr4_1:78666401-78666420 Msa0574910:intron 80.0%
! TGTGGCCCCATCGGCCGGGC+GGG + chr4_1:78666409-78666428 None:intergenic 80.0%
! GTGTGGCCCCATCGGCCGGG+CGG + chr4_1:78666410-78666429 None:intergenic 80.0%
! GTGGCCCCATCGGCCGGGCG+GGG + chr4_1:78666408-78666427 None:intergenic 85.0%
! GCCCCATCGGCCGGGCGGGG+AGG + chr4_1:78666405-78666424 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 78664596 78667222 78664596 ID=Msa0574910;Name=Msa0574910
chr4_1 mRNA 78664596 78667222 78664596 ID=Msa0574910-mRNA-1;Parent=Msa0574910;Name=Msa0574910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=37|1|0.5|1|1|1|2|0|635
chr4_1 exon 78664596 78666207 78664596 ID=Msa0574910-mRNA-1:exon:27914;Parent=Msa0574910-mRNA-1
chr4_1 exon 78666890 78667222 78666890 ID=Msa0574910-mRNA-1:exon:27913;Parent=Msa0574910-mRNA-1
chr4_1 five_prime_UTR 78667186 78667222 78667186 ID=Msa0574910-mRNA-1:five_prime_utr;Parent=Msa0574910-mRNA-1
chr4_1 CDS 78666890 78667185 78666890 ID=Msa0574910-mRNA-1:cds;Parent=Msa0574910-mRNA-1
chr4_1 CDS 78664596 78666207 78664596 ID=Msa0574910-mRNA-1:cds;Parent=Msa0574910-mRNA-1
Gene Sequence

>Msa0574910

ATGGCTATGGCAAGAGATAAAAACGAAGATGAAGAAGAGGTTCATAATCAAAATCAAAAGGGTGGGAAGAGATTGAAATGCATGAACATGAAGAAGAATGAACAAGAAGAAAAGCAAGTAGTAGATGAAGAAGAAAGTGAGCTTCCATTAAAACCAGAACTTTTCTTCTACCCAACAACACCAACATCTTTTGTTGTATCAGATGCACTTGAATCAGATTTTCCAATCATTTATGTCAACAAAGTCTTTGAAATCTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGTAACTGCCGGTTCTTGCAATATAGGGATCCTAGAGCTCAGAGGCGGCATCCTTTGGTGGATCCAGTCGTTGTGTCTGAGATTAGAAGATGTCTTGAAGAAGGTATTGAGTTCCAAGGGGAACTTCTGAATTTCAGAAAGGATGGCACTCCCTTAGTCAACAGACTTAGGCTTACGCCAATTCATGATGATGATGGAGTCGTGACACACATAATAGGTATCCAAATCTTTTCCGAAGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAAAGTGGAAAATTATTGTACACTCCACGGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATTGGTTCTGTTTGCAGGAGGATCCGTCAATTGACAAAGAACGAGCACGTTAGGAAGATGGTTTGTCAAAATGCATGGGGCAAAGAAGTGACAGGTACATTGGAACTGATGACCAAGAAGTTAGGTTGGGGCCGTCTGACTCGGGAGCTTACTACTCTTGAGGCTGTTTGCTGGAAAAAAGTTACAGTTGGAGGCGGGGTTGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTAAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCCTCCCCGCCCGGCCGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTTAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCGACATGGAAGGAAGTCTTCGGTGAAGCGCCGCCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCTAAATTGGTTGTCTCGGGCGGCTGCACAGATGCCGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCAACTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCGCTCTCAGTTTATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAACCACAATGGAGGCAACTAGAATGTAGTGCATTCACAGGTTTATCAAATCAAAATGCTGTTGTACCTCCTCCTCGACTAGATCATGTTGCAGTAAGCATGCCTTGTGGGAGGGTTATTATATTTGGAGGTTCCATTGCAGGTCTTCATTCACCGTCTCAGCTATTTCTATTGGACCCTGCCGAAGAGAAACCGACGTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGAGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTGCTGAATGAGTTGCATGAGTTGTGCTTGGCAAGTCGACAAGACTCTGACATGTGA
Protein sequence

>Msa0574910

MAMARDKNEDEEEVHNQNQKGGKRLKCMNMKKNEQEEKQVVDEEESELPLKPELFFYPTTPTSFVVSDALESDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHIIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPRQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPTSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFTGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPAEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM*