Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462150 | KEH42639.1 | 96.842 | 380 | 12 | 0 | 1 | 380 | 14 | 393 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462150 | sp|Q9XIN8|FB119_ARATH | 29.581 | 382 | 216 | 12 | 5 | 380 | 1 | 335 | 9.16e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462150 | A0A072VKT4 | 96.842 | 380 | 12 | 0 | 1 | 380 | 14 | 393 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055960 | Msa1462150 | 0.816124 | 6.500357e-52 | -8.615850e-47 |
| Msa0076620 | Msa1462150 | 0.985149 | 1.117078e-162 | -8.615850e-47 |
| Msa0127170 | Msa1462150 | 0.997535 | 2.770960e-244 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462150 | MtrunA17_Chr1g0185631 | 97.319 | 373 | 10 | 0 | 8 | 380 | 1 | 373 | 0.0 | 758 |
| Msa1462150 | MtrunA17_Chr1g0178131 | 32.533 | 375 | 181 | 12 | 15 | 380 | 15 | 326 | 3.82e-39 | 142 |
| Msa1462150 | MtrunA17_Chr7g0266771 | 29.132 | 357 | 192 | 9 | 27 | 376 | 29 | 331 | 1.84e-32 | 124 |
| Msa1462150 | MtrunA17_Chr2g0321721 | 27.759 | 299 | 160 | 11 | 27 | 324 | 17 | 260 | 6.69e-23 | 97.8 |
| Msa1462150 | MtrunA17_Chr4g0026081 | 26.111 | 360 | 217 | 11 | 23 | 380 | 29 | 341 | 8.14e-22 | 95.1 |
| Msa1462150 | MtrunA17_Chr3g0106991 | 25.234 | 321 | 179 | 15 | 19 | 332 | 9 | 275 | 9.82e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462150 | AT2G27310.1 | 29.581 | 382 | 216 | 12 | 5 | 380 | 1 | 335 | 9.31e-40 | 144 |
| Msa1462150 | AT3G44326.1 | 28.889 | 315 | 178 | 7 | 16 | 328 | 21 | 291 | 3.22e-33 | 127 |
| Msa1462150 | AT2G36090.1 | 26.316 | 380 | 199 | 13 | 9 | 380 | 6 | 312 | 1.16e-29 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGTAGACATTAGGTTTA+AGG | 0.150564 | tig0041977:-7515 | Msa1462150:CDS |
| TCTCAAAAGAAGAGTGTTTA+TGG | 0.175919 | tig0041977:-7774 | Msa1462150:CDS |
| ATGGAAGGTGCTCATGTTAA+TGG | 0.288700 | tig0041977:-7004 | Msa1462150:CDS |
| ACCTCCTTGTTTACAATAAG+AGG | 0.301284 | tig0041977:+7649 | Msa1462150:intergenic |
| CCACCGTTGTCGTTTGCATT+TGG | 0.305805 | tig0041977:+7457 | Msa1462150:intergenic |
| TCCCTTTCCATTGATGTAAT+CGG | 0.324152 | tig0041977:+7331 | Msa1462150:intergenic |
| ATTTGTATCTCCGTAATATT+CGG | 0.326290 | tig0041977:+7573 | Msa1462150:intergenic |
| ATCTGCTCCAAAGTTCTATC+TGG | 0.337911 | tig0041977:-7484 | Msa1462150:CDS |
| TTGTATCCATCGTAGACATT+AGG | 0.341375 | tig0041977:-7522 | Msa1462150:CDS |
| GACATATTACGACGACTTGA+TGG | 0.348862 | tig0041977:-7844 | Msa1462150:CDS |
| GTGACGGTCTCCTTCTTAGT+TGG | 0.381809 | tig0041977:-7276 | Msa1462150:CDS |
| CCATGTGGCCTTCAACCAAT+AGG | 0.386680 | tig0041977:-7735 | Msa1462150:CDS |
| TCGGCTTCAGTCCAATCATC+AGG | 0.425919 | tig0041977:+7592 | Msa1462150:intergenic |
| ATCTTGAGTACCCTGATGAT+TGG | 0.433708 | tig0041977:-7603 | Msa1462150:CDS |
| CTCAAAAGAAGAGTGTTTAT+GGG | 0.435795 | tig0041977:-7773 | Msa1462150:CDS |
| ACATCCTCCCTATTGGTTGA+AGG | 0.440128 | tig0041977:+7727 | Msa1462150:intergenic |
| TGGAATTCCAGATAGAACTT+TGG | 0.449118 | tig0041977:+7477 | Msa1462150:intergenic |
| GATGAGAAGTGAAAGTAGGT+TGG | 0.451574 | tig0041977:-6861 | Msa1462150:CDS |
| AAAGGAAAGACGGGAAACTA+TGG | 0.456534 | tig0041977:-7309 | Msa1462150:CDS |
| TGGACTGAAGCCGAATATTA+CGG | 0.458270 | tig0041977:-7583 | Msa1462150:CDS |
| AAAGACTTTGTCATCCGATT+CGG | 0.459110 | tig0041977:-7169 | Msa1462150:CDS |
| GATAGAACTTTGGAGCAGAT+TGG | 0.466451 | tig0041977:+7487 | Msa1462150:intergenic |
| CCGGTAGAACCGATCCGAAT+CGG | 0.475698 | tig0041977:+7155 | Msa1462150:intergenic |
| GCTAGCTGGAGTCCTCTTGA+CGG | 0.495411 | tig0041977:-7214 | Msa1462150:CDS |
| TTACTAATATCCAACTAAGA+AGG | 0.497399 | tig0041977:+7266 | Msa1462150:intergenic |
| AGAAGATGAGAAGTGAAAGT+AGG | 0.501810 | tig0041977:-6865 | Msa1462150:CDS |
| GTGAGAAGATCGATACGAAA+AGG | 0.504746 | tig0041977:+7418 | Msa1462150:intergenic |
| AACAGAACTTAGCATGCAGT+TGG | 0.506763 | tig0041977:-7032 | Msa1462150:CDS |
| ACCGATTACATCAATGGAAA+GGG | 0.509626 | tig0041977:-7332 | Msa1462150:CDS |
| TCTTCCACCGATTACATCAA+TGG | 0.509691 | tig0041977:-7338 | Msa1462150:CDS |
| GAGTCGTGTCAAAACATGAT+AGG | 0.510446 | tig0041977:-10384 | None:intergenic |
| CAAGCTAAACTAGCCAATGC+AGG | 0.510627 | tig0041977:+7820 | Msa1462150:intergenic |
| AATCATCAGGGTACTCAAGA+TGG | 0.523721 | tig0041977:+7605 | Msa1462150:intergenic |
| ATAGAGATGATAACAATGAC+GGG | 0.525539 | tig0041977:-7387 | Msa1462150:CDS |
| AATGAGTTCATGCTATCAAT+CGG | 0.526805 | tig0041977:+7886 | Msa1462150:intergenic |
| CGATGGATACAAAATCTGAT+GGG | 0.530738 | tig0041977:+7533 | Msa1462150:intergenic |
| ATGACAAAGTCTTTATCCGT+TGG | 0.531028 | tig0041977:+7178 | Msa1462150:intergenic |
| ACGATGGATACAAAATCTGA+TGG | 0.536232 | tig0041977:+7532 | Msa1462150:intergenic |
| CCGATTCGGATCGGTTCTAC+CGG | 0.537698 | tig0041977:-7155 | Msa1462150:CDS |
| GAAGACCGTCGGAGACAGAA+AGG | 0.538445 | tig0041977:+7356 | Msa1462150:intergenic |
| AGTGCAAAATGAGTTAAAAG+AGG | 0.542717 | tig0041977:-6888 | Msa1462150:CDS |
| CATGTGGCCTTCAACCAATA+GGG | 0.543923 | tig0041977:-7734 | Msa1462150:CDS |
| GTGGTTCACATCGAAGAAGA+GGG | 0.551055 | tig0041977:-7076 | Msa1462150:CDS |
| GAAGGAAGAATGTCTTTAGC+CGG | 0.552493 | tig0041977:+7136 | Msa1462150:intergenic |
| ACGACTTGATGGCCCTGCAT+TGG | 0.556002 | tig0041977:-7833 | Msa1462150:CDS |
| AAAAGTTTAATAGCATCCAT+TGG | 0.556860 | tig0041977:-7703 | Msa1462150:CDS |
| CCTATTGGTTGAAGGCCACA+TGG | 0.558028 | tig0041977:+7735 | Msa1462150:intergenic |
| CACCGATTACATCAATGGAA+AGG | 0.562879 | tig0041977:-7333 | Msa1462150:CDS |
| CTTTGTCATCCGATTCGGAT+CGG | 0.562989 | tig0041977:-7164 | Msa1462150:CDS |
| CCTTGCTATGAAGTTTAGAG+TGG | 0.564179 | tig0041977:-7095 | Msa1462150:CDS |
| ATACATTGAACTACTTGAGA+AGG | 0.564781 | tig0041977:+7118 | Msa1462150:intergenic |
| TGGAAAGGGAAAGGAAAGAC+GGG | 0.566620 | tig0041977:-7318 | Msa1462150:CDS |
| AAGCGGCTAATCTTGCTAGC+TGG | 0.570222 | tig0041977:-7228 | Msa1462150:CDS |
| AAACAAGAAAATAAAGCAAG+CGG | 0.575640 | tig0041977:-7245 | Msa1462150:CDS |
| TAGCATGCAGTTGGAAGACA+TGG | 0.578046 | tig0041977:-7023 | Msa1462150:CDS |
| AAGAAGCACTTAGCTGCAGA+AGG | 0.578468 | tig0041977:-6958 | Msa1462150:CDS |
| ATGCAAACGACAACGGTGGT+TGG | 0.580172 | tig0041977:-7453 | Msa1462150:CDS |
| CTTTCCATTGATGTAATCGG+TGG | 0.583174 | tig0041977:+7334 | Msa1462150:intergenic |
| CTCTTGACGGTCAAAGACAT+TGG | 0.584847 | tig0041977:-7201 | Msa1462150:CDS |
| TTACATCAATGGAAAGGGAA+AGG | 0.585090 | tig0041977:-7327 | Msa1462150:CDS |
| GATAGAGATGATAACAATGA+CGG | 0.587224 | tig0041977:-7388 | Msa1462150:CDS |
| GATTGACATAGTAACAATCC+TGG | 0.587297 | tig0041977:+7912 | Msa1462150:intergenic |
| AGTTTAATAGCATCCATTGG+CGG | 0.591001 | tig0041977:-7700 | Msa1462150:CDS |
| GTGACCCTTTCTGTCTCCGA+CGG | 0.591057 | tig0041977:-7361 | Msa1462150:CDS |
| AGTGGTTCACATCGAAGAAG+AGG | 0.597752 | tig0041977:-7077 | Msa1462150:CDS |
| ATGGAAAGGGAAAGGAAAGA+CGG | 0.603817 | tig0041977:-7319 | Msa1462150:CDS |
| CCACTCTAAACTTCATAGCA+AGG | 0.606643 | tig0041977:+7095 | Msa1462150:intergenic |
| CGGCTTCAGTCCAATCATCA+GGG | 0.608380 | tig0041977:+7593 | Msa1462150:intergenic |
| CTATGGCACGAGCTTCGTGA+CGG | 0.629342 | tig0041977:-7292 | Msa1462150:CDS |
| CTTAAACCTAATGTCTACGA+TGG | 0.632234 | tig0041977:+7516 | Msa1462150:intergenic |
| TCCTCTTATTGTAAACAAGG+AGG | 0.636346 | tig0041977:-7650 | Msa1462150:CDS |
| CAATGTCTTTGACCGTCAAG+AGG | 0.638150 | tig0041977:+7202 | Msa1462150:intergenic |
| AGGAGGTCGGAGAGTATCAG+TGG | 0.641231 | tig0041977:-7633 | Msa1462150:CDS |
| ATTCCAAATGCAAACGACAA+CGG | 0.641823 | tig0041977:-7460 | Msa1462150:CDS |
| CTTATTGTAAACAAGGAGGT+CGG | 0.648696 | tig0041977:-7646 | Msa1462150:CDS |
| AAGACCGTCGGAGACAGAAA+GGG | 0.648975 | tig0041977:+7357 | Msa1462150:intergenic |
| AAGCTAAACTAGCCAATGCA+GGG | 0.650146 | tig0041977:+7821 | Msa1462150:intergenic |
| ATGCAGTTGGAAGACATGGA+AGG | 0.656579 | tig0041977:-7019 | Msa1462150:CDS |
| TGGTTCACATCGAAGAAGAG+GGG | 0.668682 | tig0041977:-7075 | Msa1462150:CDS |
| TGTAATCGGTGGAAGACCGT+CGG | 0.672224 | tig0041977:+7345 | Msa1462150:intergenic |
| CGGTCAAAGACATTGGCCAA+CGG | 0.676344 | tig0041977:-7194 | Msa1462150:CDS |
| GATGGATACAAAATCTGATG+GGG | 0.676395 | tig0041977:+7534 | Msa1462150:intergenic |
| GTGGCCTTCAACCAATAGGG+AGG | 0.686001 | tig0041977:-7731 | Msa1462150:CDS |
| AGATGATAACAATGACGGGG+AGG | 0.687896 | tig0041977:-7383 | Msa1462150:CDS |
| CCAAATGCAAACGACAACGG+TGG | 0.689102 | tig0041977:-7457 | Msa1462150:CDS |
| TAGAGATGATAACAATGACG+GGG | 0.727768 | tig0041977:-7386 | Msa1462150:CDS |
| AAAATGTATGTGCATCCATG+TGG | 0.777710 | tig0041977:-7750 | Msa1462150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTCATGAAATTT+CGG | + | tig0041977:8965-8984 | Msa1462150:intergenic | 10.0% |
| !! | AACAATAATCTAAAAAGATT+GGG | + | tig0041977:6927-6946 | Msa1462150:intergenic | 15.0% |
| !! | AAACAATAATCTAAAAAGAT+TGG | + | tig0041977:6928-6947 | Msa1462150:intergenic | 15.0% |
| !! | TATAAATTTCTATTTAATGG+TGG | + | tig0041977:7817-7836 | Msa1462150:intergenic | 15.0% |
| !! | TGGTATAAATTTCTATTTAA+TGG | + | tig0041977:7820-7839 | Msa1462150:intergenic | 15.0% |
| !! | TGTCTTTATATTTAAAAAGT+TGG | + | tig0041977:7921-7940 | Msa1462150:intergenic | 15.0% |
| !! | TAGTATTTAATGTAATAAGT+TGG | - | tig0041977:8161-8180 | Msa1462150:intron | 15.0% |
| !! | AACAAATCAAAAATGAAATT+AGG | + | tig0041977:8240-8259 | Msa1462150:intergenic | 15.0% |
| !! | AATCAATAAATCAATTTCAA+TGG | - | tig0041977:8271-8290 | Msa1462150:intron | 15.0% |
| !!! | GAAAGATATGAAATTTTTTA+TGG | - | tig0041977:8572-8591 | Msa1462150:intron | 15.0% |
| !! | CAATCTATATAGTTAAGTTT+AGG | + | tig0041977:6894-6913 | Msa1462150:intergenic | 20.0% |
| !! | TTGATGAAATTCAAAATTTC+TGG | - | tig0041977:7642-7661 | Msa1462150:CDS | 20.0% |
| !! | TGATGAAATTCAAAATTTCT+GGG | - | tig0041977:7643-7662 | Msa1462150:CDS | 20.0% |
| !!! | AAATCTATTATTTTAAGAGG+TGG | + | tig0041977:7794-7813 | Msa1462150:intergenic | 20.0% |
| !!! | TGGAAATCTATTATTTTAAG+AGG | + | tig0041977:7797-7816 | Msa1462150:intergenic | 20.0% |
| !!! | ATTCGCTCATAATTTTTTTT+TGG | - | tig0041977:8194-8213 | Msa1462150:intron | 20.0% |
| !! | ATCAGATAATAAGATTTCAA+AGG | + | tig0041977:8395-8414 | Msa1462150:intergenic | 20.0% |
| !! | TTACAACAACATTTAATTGA+TGG | + | tig0041977:8435-8454 | Msa1462150:intergenic | 20.0% |
| !! | GAAAAATAGCAAACTTTAAT+AGG | - | tig0041977:8594-8613 | Msa1462150:intron | 20.0% |
| !! | CATGATATATTATTTGTCAT+TGG | - | tig0041977:8856-8875 | Msa1462150:intron | 20.0% |
| !!! | ATTGGCAATAACAATATTTT+TGG | - | tig0041977:8874-8893 | Msa1462150:intron | 20.0% |
| !! | TTCACACATTAAATGATAAT+GGG | + | tig0041977:9112-9131 | Msa1462150:intergenic | 20.0% |
| !! | TTTCACACATTAAATGATAA+TGG | + | tig0041977:9113-9132 | Msa1462150:intergenic | 20.0% |
| !!! | GATACAATTTGTATTTTAAG+TGG | - | tig0041977:10286-10305 | Msa1462150:intron | 20.0% |
| !!! | ATGTTTTGTGAAATAATTGT+AGG | - | tig0041977:10338-10357 | Msa1462150:intron | 20.0% |
| ! | ATAGTTAAGTTTAGGAAGAA+AGG | + | tig0041977:6886-6905 | Msa1462150:intergenic | 25.0% |
| ! | ATCTAAAAAGATTGGGTTAA+GGG | + | tig0041977:6920-6939 | Msa1462150:intergenic | 25.0% |
| ! | AATCTAAAAAGATTGGGTTA+AGG | + | tig0041977:6921-6940 | Msa1462150:intergenic | 25.0% |
| !! | GTTCATTTTCCATATATGTT+TGG | - | tig0041977:7173-7192 | Msa1462150:CDS | 25.0% |
| ! | TGAGAAAAACCAAACATATA+TGG | + | tig0041977:7185-7204 | Msa1462150:intergenic | 25.0% |
| !! | TCAATCTTGTTTAGGTTTAT+TGG | - | tig0041977:7202-7221 | Msa1462150:CDS | 25.0% |
| ! | ATTTGTGATGTTGTTGTAAT+AGG | - | tig0041977:7228-7247 | Msa1462150:CDS | 25.0% |
| ! | TTTGTGATGTTGTTGTAATA+GGG | - | tig0041977:7229-7248 | Msa1462150:CDS | 25.0% |
| ! | AATTTCATAAGTACTAGTGT+CGG | + | tig0041977:7306-7325 | Msa1462150:intergenic | 25.0% |
| ! | CTAGTACTTATGAAATTGTT+TGG | - | tig0041977:7309-7328 | Msa1462150:CDS | 25.0% |
| ! | AAATTGTTTGGTAGATGTTA+TGG | - | tig0041977:7321-7340 | Msa1462150:CDS | 25.0% |
| ! | AGTCAAATTAGATGTAAACT+CGG | + | tig0041977:7452-7471 | Msa1462150:intergenic | 25.0% |
| ! | CACTTAGAATTAAACATTGA+CGG | + | tig0041977:8121-8140 | Msa1462150:intergenic | 25.0% |
| ! | ACATTCAATCAATAACTCTA+AGG | + | tig0041977:8333-8352 | Msa1462150:intergenic | 25.0% |
| !!! | TGCTTACTGAACTTTTTTTT+AGG | - | tig0041977:8487-8506 | Msa1462150:intron | 25.0% |
| !!! | GCTTACTGAACTTTTTTTTA+GGG | - | tig0041977:8488-8507 | Msa1462150:intron | 25.0% |
| !!! | CTTACTGAACTTTTTTTTAG+GGG | - | tig0041977:8489-8508 | Msa1462150:intron | 25.0% |
| !! | ATTGAAACTATGCAAAGTTT+TGG | - | tig0041977:8982-9001 | Msa1462150:intron | 25.0% |
| !!! | CATAAAATGTTTTGCTATCA+TGG | + | tig0041977:9088-9107 | Msa1462150:intergenic | 25.0% |
| !! | TCACACATTAAATGATAATG+GGG | + | tig0041977:9111-9130 | Msa1462150:intergenic | 25.0% |
| ! | AAAAGTTTAATAGCATCCAT+TGG | - | tig0041977:9422-9441 | Msa1462150:intron | 25.0% |
| !! | TTTTCCTCTTATTGTAAACA+AGG | - | tig0041977:9472-9491 | Msa1462150:intron | 25.0% |
| ! | ATTTGTATCTCCGTAATATT+CGG | + | tig0041977:9555-9574 | Msa1462150:intergenic | 25.0% |
| ! | TTACTAATATCCAACTAAGA+AGG | + | tig0041977:9862-9881 | Msa1462150:intergenic | 25.0% |
| ! | AAACAAGAAAATAAAGCAAG+CGG | - | tig0041977:9880-9899 | Msa1462150:intron | 25.0% |
| !! | GAAATAATTGTAGGATTTTG+AGG | - | tig0041977:10347-10366 | Msa1462150:intron | 25.0% |
| TTTCTTTATATTCACGCTTC+TGG | - | tig0041977:6948-6967 | Msa1462150:CDS | 30.0% | |
| TTCTTTATATTCACGCTTCT+GGG | - | tig0041977:6949-6968 | Msa1462150:CDS | 30.0% | |
| ! | TTGTGTTGTTGATCATTAAG+CGG | - | tig0041977:7061-7080 | Msa1462150:CDS | 30.0% |
| ! | TTAAGCGGGTGTTATATTTA+AGG | - | tig0041977:7076-7095 | Msa1462150:CDS | 30.0% |
| !! | GGTTTTTCTCAATCTTGTTT+AGG | - | tig0041977:7194-7213 | Msa1462150:CDS | 30.0% |
| TATGCTACTAGCATGTATAA+AGG | - | tig0041977:7255-7274 | Msa1462150:CDS | 30.0% | |
| ATGCTACTAGCATGTATAAA+GGG | - | tig0041977:7256-7275 | Msa1462150:CDS | 30.0% | |
| ACATACATTATGACCATGTT+TGG | + | tig0041977:7563-7582 | Msa1462150:intergenic | 30.0% | |
| ! | ATTTTCTTTAATTCCAGCCA+CGG | - | tig0041977:7686-7705 | Msa1462150:CDS | 30.0% |
| !!! | ATGAGCGAAACTCTTTTTTA+TGG | + | tig0041977:7840-7859 | Msa1462150:intergenic | 30.0% |
| TAGAATTAAACATTGACGGA+CGG | + | tig0041977:8117-8136 | Msa1462150:intergenic | 30.0% | |
| CGTCAATGTTTAATTCTAAG+TGG | - | tig0041977:8119-8138 | Msa1462150:intron | 30.0% | |
| TACTCAACTTCATACATCAT+GGG | + | tig0041977:8357-8376 | Msa1462150:intergenic | 30.0% | |
| ! | TGAAGTTGAGTACAATGTTT+TGG | - | tig0041977:8365-8384 | Msa1462150:intron | 30.0% |
| TATTATCTGATGCCTTTAGT+AGG | - | tig0041977:8404-8423 | Msa1462150:intron | 30.0% | |
| ! | AACAACATTTAATTGATGGC+AGG | + | tig0041977:8431-8450 | Msa1462150:intergenic | 30.0% |
| AAACGACACCTAAAAATGAA+CGG | - | tig0041977:8634-8653 | Msa1462150:intron | 30.0% | |
| AATGAGTTCATGCTATCAAT+CGG | + | tig0041977:9242-9261 | Msa1462150:intergenic | 30.0% | |
| !! | TAAACACTCTTCTTTTGAGA+TGG | + | tig0041977:9351-9370 | Msa1462150:intergenic | 30.0% |
| !! | TCTCAAAAGAAGAGTGTTTA+TGG | - | tig0041977:9351-9370 | Msa1462150:intron | 30.0% |
| !! | CTCAAAAGAAGAGTGTTTAT+GGG | - | tig0041977:9352-9371 | Msa1462150:intron | 30.0% |
| GATAGAGATGATAACAATGA+CGG | - | tig0041977:9737-9756 | Msa1462150:intron | 30.0% | |
| ATAGAGATGATAACAATGAC+GGG | - | tig0041977:9738-9757 | Msa1462150:intron | 30.0% | |
| ATACATTGAACTACTTGAGA+AGG | + | tig0041977:10010-10029 | Msa1462150:intergenic | 30.0% | |
| AGTGCAAAATGAGTTAAAAG+AGG | - | tig0041977:10237-10256 | Msa1462150:intron | 30.0% | |
| ATAGGTGGAGACCATAAAAA+GGG | - | tig0041977:6759-6778 | Msa1462150:three_prime_UTR | 35.0% | |
| ! | AGTGAACTCAACCCTTTTTA+TGG | + | tig0041977:6773-6792 | Msa1462150:intergenic | 35.0% |
| ! | CTACTTTGTTTGTCTGATTG+TGG | + | tig0041977:6848-6867 | Msa1462150:intergenic | 35.0% |
| ! | AAGTTTAGGAAGAAAGGTGT+TGG | + | tig0041977:6880-6899 | Msa1462150:intergenic | 35.0% |
| ! | TGCTTCTTATGTTCCTGTTT+TGG | - | tig0041977:7014-7033 | Msa1462150:CDS | 35.0% |
| GAAACAGAATAAGCCAAAAC+AGG | + | tig0041977:7030-7049 | Msa1462150:intergenic | 35.0% | |
| ! | TGTGTTGTTGATCATTAAGC+GGG | - | tig0041977:7062-7081 | Msa1462150:CDS | 35.0% |
| TCCAAGATAACTTAGCTTAC+AGG | - | tig0041977:7383-7402 | Msa1462150:CDS | 35.0% | |
| TCCTGTAAGCTAAGTTATCT+TGG | + | tig0041977:7387-7406 | Msa1462150:intergenic | 35.0% | |
| CAAATTAGATGTAAACTCGG+TGG | + | tig0041977:7449-7468 | Msa1462150:intergenic | 35.0% | |
| TTAAGCTGCTTATCCAAACA+TGG | - | tig0041977:7547-7566 | Msa1462150:CDS | 35.0% | |
| ATATAACCAGACGAGTACTA+GGG | + | tig0041977:7742-7761 | Msa1462150:intergenic | 35.0% | |
| AATATAACCAGACGAGTACT+AGG | + | tig0041977:7743-7762 | Msa1462150:intergenic | 35.0% | |
| ! | AGAATTAAACATTGACGGAC+GGG | + | tig0041977:8116-8135 | Msa1462150:intergenic | 35.0% |
| ATTCTAAGTGGTGAGTTTGT+AGG | - | tig0041977:8131-8150 | Msa1462150:intron | 35.0% | |
| ! | CAATCAATAACTCTAAGGAG+TGG | + | tig0041977:8328-8347 | Msa1462150:intergenic | 35.0% |
| GTACTCAACTTCATACATCA+TGG | + | tig0041977:8358-8377 | Msa1462150:intergenic | 35.0% | |
| !! | TACTCTCTCCGTTCATTTTT+AGG | + | tig0041977:8645-8664 | Msa1462150:intergenic | 35.0% |
| CATTTATCTTGACTGATCTG+TGG | - | tig0041977:8819-8838 | Msa1462150:intron | 35.0% | |
| CAAATGAGTTGCAGACTTAA+AGG | + | tig0041977:8933-8952 | Msa1462150:intergenic | 35.0% | |
| AAGTCTGCAACTCATTTGTT+TGG | - | tig0041977:8935-8954 | Msa1462150:intron | 35.0% | |
| !! | GAAACTATGCAAAGTTTTGG+TGG | - | tig0041977:8985-9004 | Msa1462150:intron | 35.0% |
| !!! | TCTGTTATTTTTTGACAGCC+AGG | - | tig0041977:9195-9214 | Msa1462150:intron | 35.0% |
| GATTGACATAGTAACAATCC+TGG | + | tig0041977:9216-9235 | Msa1462150:intergenic | 35.0% | |
| AAAATGTATGTGCATCCATG+TGG | - | tig0041977:9375-9394 | Msa1462150:intron | 35.0% | |
| AGTTTAATAGCATCCATTGG+CGG | - | tig0041977:9425-9444 | Msa1462150:intron | 35.0% | |
| TCCTCTTATTGTAAACAAGG+AGG | - | tig0041977:9475-9494 | Msa1462150:intron | 35.0% | |
| ! | ACCTCCTTGTTTACAATAAG+AGG | + | tig0041977:9479-9498 | Msa1462150:intergenic | 35.0% |
| CTTATTGTAAACAAGGAGGT+CGG | - | tig0041977:9479-9498 | Msa1462150:intron | 35.0% | |
| GATGGATACAAAATCTGATG+GGG | + | tig0041977:9594-9613 | Msa1462150:intergenic | 35.0% | |
| CGATGGATACAAAATCTGAT+GGG | + | tig0041977:9595-9614 | Msa1462150:intergenic | 35.0% | |
| ACGATGGATACAAAATCTGA+TGG | + | tig0041977:9596-9615 | Msa1462150:intergenic | 35.0% | |
| TTGTATCCATCGTAGACATT+AGG | - | tig0041977:9603-9622 | Msa1462150:intron | 35.0% | |
| CTTAAACCTAATGTCTACGA+TGG | + | tig0041977:9612-9631 | Msa1462150:intergenic | 35.0% | |
| CATCGTAGACATTAGGTTTA+AGG | - | tig0041977:9610-9629 | Msa1462150:intron | 35.0% | |
| TGGAATTCCAGATAGAACTT+TGG | + | tig0041977:9651-9670 | Msa1462150:intergenic | 35.0% | |
| ATTCCAAATGCAAACGACAA+CGG | - | tig0041977:9665-9684 | Msa1462150:intron | 35.0% | |
| TAGAGATGATAACAATGACG+GGG | - | tig0041977:9739-9758 | Msa1462150:intron | 35.0% | |
| ACCGATTACATCAATGGAAA+GGG | - | tig0041977:9793-9812 | Msa1462150:intron | 35.0% | |
| TCCCTTTCCATTGATGTAAT+CGG | + | tig0041977:9797-9816 | Msa1462150:intergenic | 35.0% | |
| TTACATCAATGGAAAGGGAA+AGG | - | tig0041977:9798-9817 | Msa1462150:intron | 35.0% | |
| ATGACAAAGTCTTTATCCGT+TGG | + | tig0041977:9950-9969 | Msa1462150:intergenic | 35.0% | |
| AAAGACTTTGTCATCCGATT+CGG | - | tig0041977:9956-9975 | Msa1462150:intron | 35.0% | |
| AGAAGATGAGAAGTGAAAGT+AGG | - | tig0041977:10260-10279 | Msa1462150:intron | 35.0% | |
| !!! | TTGCTGCTTTTATGACATTC+TGG | - | tig0041977:10311-10330 | Msa1462150:intron | 35.0% |
| GATAGGTGGAGACCATAAAA+AGG | - | tig0041977:6758-6777 | Msa1462150:three_prime_UTR | 40.0% | |
| AACAGGAACATAAGAAGCAG+AGG | + | tig0041977:7013-7032 | Msa1462150:intergenic | 40.0% | |
| ! | AGATGTAAACTCGGTGGTAA+GGG | + | tig0041977:7443-7462 | Msa1462150:intergenic | 40.0% |
| ! | TAGATGTAAACTCGGTGGTA+AGG | + | tig0041977:7444-7463 | Msa1462150:intergenic | 40.0% |
| TATAACCAGACGAGTACTAG+GGG | + | tig0041977:7741-7760 | Msa1462150:intergenic | 40.0% | |
| ! | AATTAAACATTGACGGACGG+GGG | + | tig0041977:8114-8133 | Msa1462150:intergenic | 40.0% |
| ! | GAATTAAACATTGACGGACG+GGG | + | tig0041977:8115-8134 | Msa1462150:intergenic | 40.0% |
| !! | TGGTATTGACCTTTCAACTC+AGG | - | tig0041977:8291-8310 | Msa1462150:intron | 40.0% |
| CATCTTAGATGCACAAGAAC+AGG | - | tig0041977:8706-8725 | Msa1462150:intron | 40.0% | |
| ACACATGCATAGCACATTTC+TGG | - | tig0041977:8765-8784 | Msa1462150:intron | 40.0% | |
| TCTTGACTGATCTGTGGTAT+TGG | - | tig0041977:8825-8844 | Msa1462150:intron | 40.0% | |
| GACATATTACGACGACTTGA+TGG | - | tig0041977:9281-9300 | Msa1462150:intron | 40.0% | |
| AAGCTAAACTAGCCAATGCA+GGG | + | tig0041977:9307-9326 | Msa1462150:intergenic | 40.0% | |
| ! | ACTTTTGACATCCTCCCTAT+TGG | + | tig0041977:9408-9427 | Msa1462150:intergenic | 40.0% |
| !!! | GAATTTTCTGAAACCGCCAA+TGG | + | tig0041977:9441-9460 | Msa1462150:intergenic | 40.0% |
| ! | AATCATCAGGGTACTCAAGA+TGG | + | tig0041977:9523-9542 | Msa1462150:intergenic | 40.0% |
| ATCTTGAGTACCCTGATGAT+TGG | - | tig0041977:9522-9541 | Msa1462150:intron | 40.0% | |
| TGGACTGAAGCCGAATATTA+CGG | - | tig0041977:9542-9561 | Msa1462150:intron | 40.0% | |
| !! | GATAGAACTTTGGAGCAGAT+TGG | + | tig0041977:9641-9660 | Msa1462150:intergenic | 40.0% |
| ATCTGCTCCAAAGTTCTATC+TGG | - | tig0041977:9641-9660 | Msa1462150:intron | 40.0% | |
| GTGAGAAGATCGATACGAAA+AGG | + | tig0041977:9710-9729 | Msa1462150:intergenic | 40.0% | |
| ! | TCTTCCACCGATTACATCAA+TGG | - | tig0041977:9787-9806 | Msa1462150:intron | 40.0% |
| CTTTCCATTGATGTAATCGG+TGG | + | tig0041977:9794-9813 | Msa1462150:intergenic | 40.0% | |
| ! | CACCGATTACATCAATGGAA+AGG | - | tig0041977:9792-9811 | Msa1462150:intron | 40.0% |
| ATGGAAAGGGAAAGGAAAGA+CGG | - | tig0041977:9806-9825 | Msa1462150:intron | 40.0% | |
| AAAGGAAAGACGGGAAACTA+TGG | - | tig0041977:9816-9835 | Msa1462150:intron | 40.0% | |
| GAAGGAAGAATGTCTTTAGC+CGG | + | tig0041977:9992-10011 | Msa1462150:intergenic | 40.0% | |
| CCACTCTAAACTTCATAGCA+AGG | + | tig0041977:10033-10052 | Msa1462150:intergenic | 40.0% | |
| ! | CCTTGCTATGAAGTTTAGAG+TGG | - | tig0041977:10030-10049 | Msa1462150:intron | 40.0% |
| AACAGAACTTAGCATGCAGT+TGG | - | tig0041977:10093-10112 | Msa1462150:intron | 40.0% | |
| !! | ATGGAAGGTGCTCATGTTAA+TGG | - | tig0041977:10121-10140 | Msa1462150:intron | 40.0% |
| GATGAGAAGTGAAAGTAGGT+TGG | - | tig0041977:10264-10283 | Msa1462150:intron | 40.0% | |
| AGACACGAATCATGAACACG+AGG | + | tig0041977:6810-6829 | Msa1462150:intergenic | 45.0% | |
| TCTGGGAAACTGAAAGTCAG+TGG | - | tig0041977:7660-7679 | Msa1462150:CDS | 45.0% | |
| TTAATTCCAGCCACGGATCT+AGG | - | tig0041977:7693-7712 | Msa1462150:CDS | 45.0% | |
| !! | GGATCTAGGCATAGTGGATT+GGG | - | tig0041977:7707-7726 | Msa1462150:CDS | 45.0% |
| !! | GATCTAGGCATAGTGGATTG+GGG | - | tig0041977:7708-7727 | Msa1462150:CDS | 45.0% |
| !! | ATCTAGGCATAGTGGATTGG+GGG | - | tig0041977:7709-7728 | Msa1462150:CDS | 45.0% |
| ATTGACCTTTCAACTCAGGC+AGG | - | tig0041977:8295-8314 | Msa1462150:intron | 45.0% | |
| ! | TAACTCTAAGGAGTGGCCTA+GGG | + | tig0041977:8321-8340 | Msa1462150:intergenic | 45.0% |
| ! | ATAACTCTAAGGAGTGGCCT+AGG | + | tig0041977:8322-8341 | Msa1462150:intergenic | 45.0% |
| ! | TTGATGGCAGGTCCTACTAA+AGG | + | tig0041977:8419-8438 | Msa1462150:intergenic | 45.0% |
| CAAGCTAAACTAGCCAATGC+AGG | + | tig0041977:9308-9327 | Msa1462150:intergenic | 45.0% | |
| CATGTGGCCTTCAACCAATA+GGG | - | tig0041977:9391-9410 | Msa1462150:intron | 45.0% | |
| ! | ACATCCTCCCTATTGGTTGA+AGG | + | tig0041977:9401-9420 | Msa1462150:intergenic | 45.0% |
| ! | AGATGATAACAATGACGGGG+AGG | - | tig0041977:9742-9761 | Msa1462150:intron | 45.0% |
| TGGAAAGGGAAAGGAAAGAC+GGG | - | tig0041977:9807-9826 | Msa1462150:intron | 45.0% | |
| CAATGTCTTTGACCGTCAAG+AGG | + | tig0041977:9926-9945 | Msa1462150:intergenic | 45.0% | |
| CTCTTGACGGTCAAAGACAT+TGG | - | tig0041977:9924-9943 | Msa1462150:intron | 45.0% | |
| !! | CTTTGTCATCCGATTCGGAT+CGG | - | tig0041977:9961-9980 | Msa1462150:intron | 45.0% |
| AGTGGTTCACATCGAAGAAG+AGG | - | tig0041977:10048-10067 | Msa1462150:intron | 45.0% | |
| GTGGTTCACATCGAAGAAGA+GGG | - | tig0041977:10049-10068 | Msa1462150:intron | 45.0% | |
| TGGTTCACATCGAAGAAGAG+GGG | - | tig0041977:10050-10069 | Msa1462150:intron | 45.0% | |
| TAGCATGCAGTTGGAAGACA+TGG | - | tig0041977:10102-10121 | Msa1462150:intron | 45.0% | |
| ATGCAGTTGGAAGACATGGA+AGG | - | tig0041977:10106-10125 | Msa1462150:intron | 45.0% | |
| !! | AAGAAGCACTTAGCTGCAGA+AGG | - | tig0041977:10167-10186 | Msa1462150:intron | 45.0% |
| !!! | TAATTTTTCTAATATATAAT+AGG | - | tig0041977:7981-8000 | Msa1462150:intron | 5.0% |
| !! | TTTATATGATAAATATTTAT+AGG | + | tig0041977:8085-8104 | Msa1462150:intergenic | 5.0% |
| ATCCACTATGCCTAGATCCG+TGG | + | tig0041977:7706-7725 | Msa1462150:intergenic | 50.0% | |
| !! | CGGATCTAGGCATAGTGGAT+TGG | - | tig0041977:7706-7725 | Msa1462150:CDS | 50.0% |
| TTGCTCGTGTGAGTCCTTGA+GGG | - | tig0041977:9023-9042 | Msa1462150:intron | 50.0% | |
| ! | CCTATTGGTTGAAGGCCACA+TGG | + | tig0041977:9393-9412 | Msa1462150:intergenic | 50.0% |
| CCATGTGGCCTTCAACCAAT+AGG | - | tig0041977:9390-9409 | Msa1462150:intron | 50.0% | |
| CGGCTTCAGTCCAATCATCA+GGG | + | tig0041977:9535-9554 | Msa1462150:intergenic | 50.0% | |
| TCGGCTTCAGTCCAATCATC+AGG | + | tig0041977:9536-9555 | Msa1462150:intergenic | 50.0% | |
| ! | CCACCGTTGTCGTTTGCATT+TGG | + | tig0041977:9671-9690 | Msa1462150:intergenic | 50.0% |
| CCAAATGCAAACGACAACGG+TGG | - | tig0041977:9668-9687 | Msa1462150:intron | 50.0% | |
| ATGCAAACGACAACGGTGGT+TGG | - | tig0041977:9672-9691 | Msa1462150:intron | 50.0% | |
| AAGACCGTCGGAGACAGAAA+GGG | + | tig0041977:9771-9790 | Msa1462150:intergenic | 50.0% | |
| TGTAATCGGTGGAAGACCGT+CGG | + | tig0041977:9783-9802 | Msa1462150:intergenic | 50.0% | |
| GTGACGGTCTCCTTCTTAGT+TGG | - | tig0041977:9849-9868 | Msa1462150:intron | 50.0% | |
| AAGCGGCTAATCTTGCTAGC+TGG | - | tig0041977:9897-9916 | Msa1462150:intron | 50.0% | |
| CGGTCAAAGACATTGGCCAA+CGG | - | tig0041977:9931-9950 | Msa1462150:intron | 50.0% | |
| ACTATGCCTAGATCCGTGGC+TGG | + | tig0041977:7702-7721 | Msa1462150:intergenic | 55.0% | |
| AGCCACGGATCTAGGCATAG+TGG | - | tig0041977:7701-7720 | Msa1462150:CDS | 55.0% | |
| AACTGCCCCTAGTACTCGTC+TGG | - | tig0041977:7733-7752 | Msa1462150:CDS | 55.0% | |
| ! | TAGGGCCTGCCTGAGTTGAA+AGG | + | tig0041977:8303-8322 | Msa1462150:intergenic | 55.0% |
| TTTCAACTCAGGCAGGCCCT+AGG | - | tig0041977:8302-8321 | Msa1462150:intron | 55.0% | |
| CTTGCTCGTGTGAGTCCTTG+AGG | - | tig0041977:9022-9041 | Msa1462150:intron | 55.0% | |
| AGTCCTTGAGGGCTCTGTTC+TGG | - | tig0041977:9034-9053 | Msa1462150:intron | 55.0% | |
| ! | ACGACTTGATGGCCCTGCAT+TGG | - | tig0041977:9292-9311 | Msa1462150:intron | 55.0% |
| GTGGCCTTCAACCAATAGGG+AGG | - | tig0041977:9394-9413 | Msa1462150:intron | 55.0% | |
| !! | AGGAGGTCGGAGAGTATCAG+TGG | - | tig0041977:9492-9511 | Msa1462150:intron | 55.0% |
| GTGACCCTTTCTGTCTCCGA+CGG | - | tig0041977:9764-9783 | Msa1462150:intron | 55.0% | |
| GAAGACCGTCGGAGACAGAA+AGG | + | tig0041977:9772-9791 | Msa1462150:intergenic | 55.0% | |
| CTATGGCACGAGCTTCGTGA+CGG | - | tig0041977:9833-9852 | Msa1462150:intron | 55.0% | |
| GCTAGCTGGAGTCCTCTTGA+CGG | - | tig0041977:9911-9930 | Msa1462150:intron | 55.0% | |
| CCGGTAGAACCGATCCGAAT+CGG | + | tig0041977:9973-9992 | Msa1462150:intergenic | 55.0% | |
| !! | CCGATTCGGATCGGTTCTAC+CGG | - | tig0041977:9970-9989 | Msa1462150:intron | 55.0% |
| GCGCCAGAACAGAGCCCTCA+AGG | + | tig0041977:9040-9059 | Msa1462150:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041977 | gene | 6756 | 10391 | 6756 | ID=Msa1462150;Name=Msa1462150 |
| tig0041977 | mRNA | 6756 | 10391 | 6756 | ID=Msa1462150-mRNA-1;Parent=Msa1462150;Name=Msa1462150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|0.5|1|1|2|43|380 |
| tig0041977 | exon | 6756 | 7934 | 6756 | ID=Msa1462150-mRNA-1:exon:23522;Parent=Msa1462150-mRNA-1 |
| tig0041977 | exon | 10385 | 10391 | 10385 | ID=Msa1462150-mRNA-1:exon:23521;Parent=Msa1462150-mRNA-1 |
| tig0041977 | CDS | 10385 | 10391 | 10385 | ID=Msa1462150-mRNA-1:cds;Parent=Msa1462150-mRNA-1 |
| tig0041977 | CDS | 6799 | 7934 | 6799 | ID=Msa1462150-mRNA-1:cds;Parent=Msa1462150-mRNA-1 |
| tig0041977 | three_prime_UTR | 6756 | 6798 | 6756 | ID=Msa1462150-mRNA-1:three_prime_utr;Parent=Msa1462150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
