Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127170 | sp|Q9XIN8|FB119_ARATH | 29.581 | 382 | 216 | 12 | 5 | 380 | 1 | 335 | 9.16e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127170 | A0A072VKT4 | 96.842 | 380 | 12 | 0 | 1 | 380 | 14 | 393 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055960 | Msa0127170 | 0.816756 | 4.692331e-52 | -8.615850e-47 |
| Msa0076620 | Msa0127170 | 0.981734 | 2.569223e-153 | -8.615850e-47 |
| Msa0127170 | Msa0153480 | 0.800508 | 1.394383e-48 | -8.615850e-47 |
| Msa0127170 | Msa0438470 | 0.802393 | 5.731622e-49 | -8.615850e-47 |
| Msa0127170 | Msa0574910 | 0.800986 | 1.113855e-48 | -8.615850e-47 |
| Msa0127170 | Msa1462150 | 0.997535 | 2.770960e-244 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127170 | MtrunA17_Chr1g0185631 | 97.319 | 373 | 10 | 0 | 8 | 380 | 1 | 373 | 0.0 | 758 |
| Msa0127170 | MtrunA17_Chr1g0178131 | 32.533 | 375 | 181 | 12 | 15 | 380 | 15 | 326 | 3.82e-39 | 142 |
| Msa0127170 | MtrunA17_Chr7g0266771 | 29.132 | 357 | 192 | 9 | 27 | 376 | 29 | 331 | 1.84e-32 | 124 |
| Msa0127170 | MtrunA17_Chr2g0321721 | 27.759 | 299 | 160 | 11 | 27 | 324 | 17 | 260 | 6.69e-23 | 97.8 |
| Msa0127170 | MtrunA17_Chr4g0026081 | 26.111 | 360 | 217 | 11 | 23 | 380 | 29 | 341 | 8.14e-22 | 95.1 |
| Msa0127170 | MtrunA17_Chr3g0106991 | 25.234 | 321 | 179 | 15 | 19 | 332 | 9 | 275 | 9.82e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0127170 | AT2G27310.1 | 29.581 | 382 | 216 | 12 | 5 | 380 | 1 | 335 | 9.31e-40 | 144 |
| Msa0127170 | AT3G44326.1 | 28.889 | 315 | 178 | 7 | 16 | 328 | 21 | 291 | 3.22e-33 | 127 |
| Msa0127170 | AT2G36090.1 | 26.316 | 380 | 199 | 13 | 9 | 380 | 6 | 312 | 1.16e-29 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGTAGACATTAGGTTTA+AGG | 0.150564 | 1_3:-56384990 | Msa0127170:CDS |
| TCTCAAAAGAAGAGTGTTTA+TGG | 0.175919 | 1_3:-56385249 | Msa0127170:CDS |
| ATGGAAGGTGCTCATGTTAA+TGG | 0.288700 | 1_3:-56384479 | Msa0127170:CDS |
| ACCTCCTTGTTTACAATAAG+AGG | 0.301284 | 1_3:+56385124 | None:intergenic |
| CCACCGTTGTCGTTTGCATT+TGG | 0.305805 | 1_3:+56384932 | None:intergenic |
| TCCCTTTCCATTGATGTAAT+CGG | 0.324152 | 1_3:+56384806 | None:intergenic |
| ATTTGTATCTCCGTAATATT+CGG | 0.326290 | 1_3:+56385048 | None:intergenic |
| ATCTGCTCCAAAGTTCTATC+TGG | 0.337911 | 1_3:-56384959 | Msa0127170:CDS |
| TTGTATCCATCGTAGACATT+AGG | 0.341375 | 1_3:-56384997 | Msa0127170:CDS |
| GACATATTACGACGACTTGA+TGG | 0.348862 | 1_3:-56385319 | Msa0127170:CDS |
| GTGACGGTCTCCTTCTTAGT+TGG | 0.381809 | 1_3:-56384751 | Msa0127170:CDS |
| CCATGTGGCCTTCAACCAAT+AGG | 0.386680 | 1_3:-56385210 | Msa0127170:CDS |
| TCGGCTTCAGTCCAATCATC+AGG | 0.425919 | 1_3:+56385067 | None:intergenic |
| ATCTTGAGTACCCTGATGAT+TGG | 0.433708 | 1_3:-56385078 | Msa0127170:CDS |
| CTCAAAAGAAGAGTGTTTAT+GGG | 0.435795 | 1_3:-56385248 | Msa0127170:CDS |
| ACATCCTCCCTATTGGTTGA+AGG | 0.440128 | 1_3:+56385202 | None:intergenic |
| TGGAATTCCAGATAGAACTT+TGG | 0.449118 | 1_3:+56384952 | None:intergenic |
| GATGAGAAGTGAAAGTAGGT+TGG | 0.451574 | 1_3:-56384336 | Msa0127170:CDS |
| AAAGGAAAGACGGGAAACTA+TGG | 0.456534 | 1_3:-56384784 | Msa0127170:CDS |
| TGGACTGAAGCCGAATATTA+CGG | 0.458270 | 1_3:-56385058 | Msa0127170:CDS |
| AAAGACTTTGTCATCCGATT+CGG | 0.459110 | 1_3:-56384644 | Msa0127170:CDS |
| GATAGAACTTTGGAGCAGAT+TGG | 0.466451 | 1_3:+56384962 | None:intergenic |
| CCGGTAGAACCGATCCGAAT+CGG | 0.475698 | 1_3:+56384630 | None:intergenic |
| GCTAGCTGGAGTCCTCTTGA+CGG | 0.495411 | 1_3:-56384689 | Msa0127170:CDS |
| TTACTAATATCCAACTAAGA+AGG | 0.497399 | 1_3:+56384741 | None:intergenic |
| AGAAGATGAGAAGTGAAAGT+AGG | 0.501810 | 1_3:-56384340 | Msa0127170:CDS |
| GTGAGAAGATCGATACGAAA+AGG | 0.504746 | 1_3:+56384893 | None:intergenic |
| AACAGAACTTAGCATGCAGT+TGG | 0.506763 | 1_3:-56384507 | Msa0127170:CDS |
| ACCGATTACATCAATGGAAA+GGG | 0.509626 | 1_3:-56384807 | Msa0127170:CDS |
| TCTTCCACCGATTACATCAA+TGG | 0.509691 | 1_3:-56384813 | Msa0127170:CDS |
| GAGTCGTGTCAAAACATGAT+AGG | 0.510446 | 1_3:-56387858 | None:intergenic |
| CAAGCTAAACTAGCCAATGC+AGG | 0.510627 | 1_3:+56385295 | None:intergenic |
| AATCATCAGGGTACTCAAGA+TGG | 0.523721 | 1_3:+56385080 | None:intergenic |
| ATAGAGATGATAACAATGAC+GGG | 0.525539 | 1_3:-56384862 | Msa0127170:CDS |
| AATGAGTTCATGCTATCAAT+CGG | 0.526805 | 1_3:+56385361 | None:intergenic |
| CGATGGATACAAAATCTGAT+GGG | 0.530738 | 1_3:+56385008 | None:intergenic |
| ATGACAAAGTCTTTATCCGT+TGG | 0.531028 | 1_3:+56384653 | None:intergenic |
| ACGATGGATACAAAATCTGA+TGG | 0.536232 | 1_3:+56385007 | None:intergenic |
| CCGATTCGGATCGGTTCTAC+CGG | 0.537698 | 1_3:-56384630 | Msa0127170:CDS |
| GAAGACCGTCGGAGACAGAA+AGG | 0.538445 | 1_3:+56384831 | None:intergenic |
| AGTGCAAAATGAGTTAAAAG+AGG | 0.542717 | 1_3:-56384363 | Msa0127170:CDS |
| CATGTGGCCTTCAACCAATA+GGG | 0.543923 | 1_3:-56385209 | Msa0127170:CDS |
| GTGGTTCACATCGAAGAAGA+GGG | 0.551055 | 1_3:-56384551 | Msa0127170:CDS |
| GAAGGAAGAATGTCTTTAGC+CGG | 0.552493 | 1_3:+56384611 | None:intergenic |
| ACGACTTGATGGCCCTGCAT+TGG | 0.556002 | 1_3:-56385308 | Msa0127170:CDS |
| AAAAGTTTAATAGCATCCAT+TGG | 0.556860 | 1_3:-56385178 | Msa0127170:CDS |
| CCTATTGGTTGAAGGCCACA+TGG | 0.558028 | 1_3:+56385210 | None:intergenic |
| CACCGATTACATCAATGGAA+AGG | 0.562879 | 1_3:-56384808 | Msa0127170:CDS |
| CTTTGTCATCCGATTCGGAT+CGG | 0.562989 | 1_3:-56384639 | Msa0127170:CDS |
| CCTTGCTATGAAGTTTAGAG+TGG | 0.564179 | 1_3:-56384570 | Msa0127170:CDS |
| ATACATTGAACTACTTGAGA+AGG | 0.564781 | 1_3:+56384593 | None:intergenic |
| TGGAAAGGGAAAGGAAAGAC+GGG | 0.566620 | 1_3:-56384793 | Msa0127170:CDS |
| AAGCGGCTAATCTTGCTAGC+TGG | 0.570222 | 1_3:-56384703 | Msa0127170:CDS |
| AAACAAGAAAATAAAGCAAG+CGG | 0.575640 | 1_3:-56384720 | Msa0127170:CDS |
| TAGCATGCAGTTGGAAGACA+TGG | 0.578046 | 1_3:-56384498 | Msa0127170:CDS |
| AAGAAGCACTTAGCTGCAGA+AGG | 0.578468 | 1_3:-56384433 | Msa0127170:CDS |
| ATGCAAACGACAACGGTGGT+TGG | 0.580172 | 1_3:-56384928 | Msa0127170:CDS |
| CTTTCCATTGATGTAATCGG+TGG | 0.583174 | 1_3:+56384809 | None:intergenic |
| CTCTTGACGGTCAAAGACAT+TGG | 0.584847 | 1_3:-56384676 | Msa0127170:CDS |
| TTACATCAATGGAAAGGGAA+AGG | 0.585090 | 1_3:-56384802 | Msa0127170:CDS |
| GATAGAGATGATAACAATGA+CGG | 0.587224 | 1_3:-56384863 | Msa0127170:CDS |
| GATTGACATAGTAACAATCC+TGG | 0.587297 | 1_3:+56385387 | None:intergenic |
| AGTTTAATAGCATCCATTGG+CGG | 0.591001 | 1_3:-56385175 | Msa0127170:CDS |
| GTGACCCTTTCTGTCTCCGA+CGG | 0.591057 | 1_3:-56384836 | Msa0127170:CDS |
| AGTGGTTCACATCGAAGAAG+AGG | 0.597752 | 1_3:-56384552 | Msa0127170:CDS |
| ATGGAAAGGGAAAGGAAAGA+CGG | 0.603817 | 1_3:-56384794 | Msa0127170:CDS |
| CCACTCTAAACTTCATAGCA+AGG | 0.606643 | 1_3:+56384570 | None:intergenic |
| CGGCTTCAGTCCAATCATCA+GGG | 0.608380 | 1_3:+56385068 | None:intergenic |
| CTATGGCACGAGCTTCGTGA+CGG | 0.629342 | 1_3:-56384767 | Msa0127170:CDS |
| CTTAAACCTAATGTCTACGA+TGG | 0.632234 | 1_3:+56384991 | None:intergenic |
| TCCTCTTATTGTAAACAAGG+AGG | 0.636346 | 1_3:-56385125 | Msa0127170:CDS |
| CAATGTCTTTGACCGTCAAG+AGG | 0.638150 | 1_3:+56384677 | None:intergenic |
| AGGAGGTCGGAGAGTATCAG+TGG | 0.641231 | 1_3:-56385108 | Msa0127170:CDS |
| ATTCCAAATGCAAACGACAA+CGG | 0.641823 | 1_3:-56384935 | Msa0127170:CDS |
| CTTATTGTAAACAAGGAGGT+CGG | 0.648696 | 1_3:-56385121 | Msa0127170:CDS |
| AAGACCGTCGGAGACAGAAA+GGG | 0.648975 | 1_3:+56384832 | None:intergenic |
| AAGCTAAACTAGCCAATGCA+GGG | 0.650146 | 1_3:+56385296 | None:intergenic |
| ATGCAGTTGGAAGACATGGA+AGG | 0.656579 | 1_3:-56384494 | Msa0127170:CDS |
| TGGTTCACATCGAAGAAGAG+GGG | 0.668682 | 1_3:-56384550 | Msa0127170:CDS |
| TGTAATCGGTGGAAGACCGT+CGG | 0.672224 | 1_3:+56384820 | None:intergenic |
| CGGTCAAAGACATTGGCCAA+CGG | 0.676344 | 1_3:-56384669 | Msa0127170:CDS |
| GATGGATACAAAATCTGATG+GGG | 0.676395 | 1_3:+56385009 | None:intergenic |
| GTGGCCTTCAACCAATAGGG+AGG | 0.686001 | 1_3:-56385206 | Msa0127170:CDS |
| AGATGATAACAATGACGGGG+AGG | 0.687896 | 1_3:-56384858 | Msa0127170:CDS |
| CCAAATGCAAACGACAACGG+TGG | 0.689102 | 1_3:-56384932 | Msa0127170:CDS |
| TAGAGATGATAACAATGACG+GGG | 0.727768 | 1_3:-56384861 | Msa0127170:CDS |
| AAAATGTATGTGCATCCATG+TGG | 0.777710 | 1_3:-56385225 | Msa0127170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTCATGAAATTT+CGG | + | chr1_3:56386440-56386459 | None:intergenic | 10.0% |
| !! | AACAATAATCTAAAAAGATT+GGG | + | chr1_3:56384402-56384421 | None:intergenic | 15.0% |
| !! | AAACAATAATCTAAAAAGAT+TGG | + | chr1_3:56384403-56384422 | None:intergenic | 15.0% |
| !! | TATAAATTTCTATTTAATGG+TGG | + | chr1_3:56385292-56385311 | None:intergenic | 15.0% |
| !! | TGGTATAAATTTCTATTTAA+TGG | + | chr1_3:56385295-56385314 | None:intergenic | 15.0% |
| !! | TGTCTTTATATTTAAAAAGT+TGG | + | chr1_3:56385396-56385415 | None:intergenic | 15.0% |
| !! | TAGTATTTAATGTAATAAGT+TGG | - | chr1_3:56385636-56385655 | Msa0127170:intron | 15.0% |
| !! | AACAAATCAAAAATGAAATT+AGG | + | chr1_3:56385715-56385734 | None:intergenic | 15.0% |
| !! | AATCAATAAATCAATTTCAA+TGG | - | chr1_3:56385746-56385765 | Msa0127170:intron | 15.0% |
| !! | CAATCTATATAGTTAAGTTT+AGG | + | chr1_3:56384369-56384388 | None:intergenic | 20.0% |
| !! | TTGATGAAATTCAAAATTTC+TGG | - | chr1_3:56385117-56385136 | Msa0127170:CDS | 20.0% |
| !! | TGATGAAATTCAAAATTTCT+GGG | - | chr1_3:56385118-56385137 | Msa0127170:CDS | 20.0% |
| !!! | AAATCTATTATTTTAAGAGG+TGG | + | chr1_3:56385269-56385288 | None:intergenic | 20.0% |
| !!! | TGGAAATCTATTATTTTAAG+AGG | + | chr1_3:56385272-56385291 | None:intergenic | 20.0% |
| !!! | ATTCGCTCATAATTTTTTTT+TGG | - | chr1_3:56385669-56385688 | Msa0127170:intron | 20.0% |
| !! | ATCAGATAATAAGATTTCAA+AGG | + | chr1_3:56385870-56385889 | None:intergenic | 20.0% |
| !! | TTACAACAACATTTAATTGA+TGG | + | chr1_3:56385910-56385929 | None:intergenic | 20.0% |
| !!! | GAAAGATGTGAAATTTTTTA+TGG | - | chr1_3:56386047-56386066 | Msa0127170:intron | 20.0% |
| !! | GAAAAATAGCAAACTTTAAT+AGG | - | chr1_3:56386069-56386088 | Msa0127170:intron | 20.0% |
| !! | CATGATATATTATTTGTCAT+TGG | - | chr1_3:56386331-56386350 | Msa0127170:intron | 20.0% |
| !!! | ATTGGCAATAACAATATTTT+TGG | - | chr1_3:56386349-56386368 | Msa0127170:intron | 20.0% |
| !! | TTCACACATTAAATGATAAT+GGG | + | chr1_3:56386587-56386606 | None:intergenic | 20.0% |
| !! | TTTCACACATTAAATGATAA+TGG | + | chr1_3:56386588-56386607 | None:intergenic | 20.0% |
| !!! | GATACAATTTGTATTTTAAG+TGG | - | chr1_3:56387760-56387779 | Msa0127170:intron | 20.0% |
| !!! | ATGTTTTGTGAAATAATTGT+AGG | - | chr1_3:56387812-56387831 | Msa0127170:intron | 20.0% |
| ! | ATAGTTAAGTTTAGGAAGAA+AGG | + | chr1_3:56384361-56384380 | None:intergenic | 25.0% |
| ! | ATCTAAAAAGATTGGGTTAA+GGG | + | chr1_3:56384395-56384414 | None:intergenic | 25.0% |
| ! | AATCTAAAAAGATTGGGTTA+AGG | + | chr1_3:56384396-56384415 | None:intergenic | 25.0% |
| !! | GTTCATTTTCCATATATGTT+TGG | - | chr1_3:56384648-56384667 | Msa0127170:CDS | 25.0% |
| ! | TGAGAAAAACCAAACATATA+TGG | + | chr1_3:56384660-56384679 | None:intergenic | 25.0% |
| !! | TCAATCTTGTTTAGGTTTAT+TGG | - | chr1_3:56384677-56384696 | Msa0127170:CDS | 25.0% |
| ! | ATTTGTGATGTTGTTGTAAT+AGG | - | chr1_3:56384703-56384722 | Msa0127170:CDS | 25.0% |
| ! | TTTGTGATGTTGTTGTAATA+GGG | - | chr1_3:56384704-56384723 | Msa0127170:CDS | 25.0% |
| ! | AATTTCATAAGTACTAGTGT+CGG | + | chr1_3:56384781-56384800 | None:intergenic | 25.0% |
| ! | CTAGTACTTATGAAATTGTT+TGG | - | chr1_3:56384784-56384803 | Msa0127170:CDS | 25.0% |
| ! | AAATTGTTTGGTAGATGTTA+TGG | - | chr1_3:56384796-56384815 | Msa0127170:CDS | 25.0% |
| ! | AGTCAAATTAGATGTAAACT+CGG | + | chr1_3:56384927-56384946 | None:intergenic | 25.0% |
| ! | CACTTAGAATTAAACATTGA+CGG | + | chr1_3:56385596-56385615 | None:intergenic | 25.0% |
| ! | ACATTCAATCAATAACTCTA+AGG | + | chr1_3:56385808-56385827 | None:intergenic | 25.0% |
| !!! | TGCTTACTGAACTTTTTTTT+AGG | - | chr1_3:56385962-56385981 | Msa0127170:intron | 25.0% |
| !!! | GCTTACTGAACTTTTTTTTA+GGG | - | chr1_3:56385963-56385982 | Msa0127170:intron | 25.0% |
| !!! | CTTACTGAACTTTTTTTTAG+GGG | - | chr1_3:56385964-56385983 | Msa0127170:intron | 25.0% |
| !! | ATTGAAACTATGCAAAGTTT+TGG | - | chr1_3:56386457-56386476 | Msa0127170:intron | 25.0% |
| !!! | CATAAAATGTTTTGCTATCA+TGG | + | chr1_3:56386563-56386582 | None:intergenic | 25.0% |
| !! | TCACACATTAAATGATAATG+GGG | + | chr1_3:56386586-56386605 | None:intergenic | 25.0% |
| ! | AAAAGTTTAATAGCATCCAT+TGG | - | chr1_3:56386896-56386915 | Msa0127170:intron | 25.0% |
| !! | TTTTCCTCTTATTGTAAACA+AGG | - | chr1_3:56386946-56386965 | Msa0127170:intron | 25.0% |
| ! | ATTTGTATCTCCGTAATATT+CGG | + | chr1_3:56387029-56387048 | None:intergenic | 25.0% |
| ! | TTACTAATATCCAACTAAGA+AGG | + | chr1_3:56387336-56387355 | None:intergenic | 25.0% |
| ! | AAACAAGAAAATAAAGCAAG+CGG | - | chr1_3:56387354-56387373 | Msa0127170:intron | 25.0% |
| !! | GAAATAATTGTAGGATTTTG+AGG | - | chr1_3:56387821-56387840 | Msa0127170:intron | 25.0% |
| TTTCTTTATATTCACGCTTC+TGG | - | chr1_3:56384423-56384442 | Msa0127170:CDS | 30.0% | |
| TTCTTTATATTCACGCTTCT+GGG | - | chr1_3:56384424-56384443 | Msa0127170:CDS | 30.0% | |
| ! | TTGTGTTGTTGATCATTAAG+CGG | - | chr1_3:56384536-56384555 | Msa0127170:CDS | 30.0% |
| ! | TTAAGCGGGTGTTATATTTA+AGG | - | chr1_3:56384551-56384570 | Msa0127170:CDS | 30.0% |
| !! | GGTTTTTCTCAATCTTGTTT+AGG | - | chr1_3:56384669-56384688 | Msa0127170:CDS | 30.0% |
| TATGCTACTAGCATGTATAA+AGG | - | chr1_3:56384730-56384749 | Msa0127170:CDS | 30.0% | |
| ATGCTACTAGCATGTATAAA+GGG | - | chr1_3:56384731-56384750 | Msa0127170:CDS | 30.0% | |
| ACATACATTATGACCATGTT+TGG | + | chr1_3:56385038-56385057 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTAATTCCAGCCA+CGG | - | chr1_3:56385161-56385180 | Msa0127170:CDS | 30.0% |
| !!! | ATGAGCGAAACTCTTTTTTA+TGG | + | chr1_3:56385315-56385334 | None:intergenic | 30.0% |
| TAGAATTAAACATTGACGGA+CGG | + | chr1_3:56385592-56385611 | None:intergenic | 30.0% | |
| CGTCAATGTTTAATTCTAAG+TGG | - | chr1_3:56385594-56385613 | Msa0127170:intron | 30.0% | |
| TACTCAACTTCATACATCAT+GGG | + | chr1_3:56385832-56385851 | None:intergenic | 30.0% | |
| ! | TGAAGTTGAGTACAATGTTT+TGG | - | chr1_3:56385840-56385859 | Msa0127170:intron | 30.0% |
| TATTATCTGATGCCTTTAGT+AGG | - | chr1_3:56385879-56385898 | Msa0127170:intron | 30.0% | |
| ! | AACAACATTTAATTGATGGC+AGG | + | chr1_3:56385906-56385925 | None:intergenic | 30.0% |
| AAACGACACCTAAAAATGAA+CGG | - | chr1_3:56386109-56386128 | Msa0127170:intron | 30.0% | |
| AATGAGTTCATGCTATCAAT+CGG | + | chr1_3:56386716-56386735 | None:intergenic | 30.0% | |
| !! | TAAACACTCTTCTTTTGAGA+TGG | + | chr1_3:56386825-56386844 | None:intergenic | 30.0% |
| !! | TCTCAAAAGAAGAGTGTTTA+TGG | - | chr1_3:56386825-56386844 | Msa0127170:intron | 30.0% |
| !! | CTCAAAAGAAGAGTGTTTAT+GGG | - | chr1_3:56386826-56386845 | Msa0127170:intron | 30.0% |
| GATAGAGATGATAACAATGA+CGG | - | chr1_3:56387211-56387230 | Msa0127170:intron | 30.0% | |
| ATAGAGATGATAACAATGAC+GGG | - | chr1_3:56387212-56387231 | Msa0127170:intron | 30.0% | |
| ATACATTGAACTACTTGAGA+AGG | + | chr1_3:56387484-56387503 | None:intergenic | 30.0% | |
| AGTGCAAAATGAGTTAAAAG+AGG | - | chr1_3:56387711-56387730 | Msa0127170:intron | 30.0% | |
| ATAGGTGGAGACCATAAAAA+GGG | - | chr1_3:56384234-56384253 | Msa0127170:three_prime_UTR | 35.0% | |
| ! | AGTGAACTCAACCCTTTTTA+TGG | + | chr1_3:56384248-56384267 | None:intergenic | 35.0% |
| ! | CTACTTTGTTTGTCTGATTG+TGG | + | chr1_3:56384323-56384342 | None:intergenic | 35.0% |
| ! | AAGTTTAGGAAGAAAGGTGT+TGG | + | chr1_3:56384355-56384374 | None:intergenic | 35.0% |
| ! | TGCTTCTTATGTTCCTGTTT+TGG | - | chr1_3:56384489-56384508 | Msa0127170:CDS | 35.0% |
| GAAACAGAATAAGCCAAAAC+AGG | + | chr1_3:56384505-56384524 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTGATCATTAAGC+GGG | - | chr1_3:56384537-56384556 | Msa0127170:CDS | 35.0% |
| TCCAAGATAACTTAGCTTAC+AGG | - | chr1_3:56384858-56384877 | Msa0127170:CDS | 35.0% | |
| TCCTGTAAGCTAAGTTATCT+TGG | + | chr1_3:56384862-56384881 | None:intergenic | 35.0% | |
| CAAATTAGATGTAAACTCGG+TGG | + | chr1_3:56384924-56384943 | None:intergenic | 35.0% | |
| TTAAGCTGCTTATCCAAACA+TGG | - | chr1_3:56385022-56385041 | Msa0127170:CDS | 35.0% | |
| ATATAACCAGACGAGTACTA+GGG | + | chr1_3:56385217-56385236 | None:intergenic | 35.0% | |
| AATATAACCAGACGAGTACT+AGG | + | chr1_3:56385218-56385237 | None:intergenic | 35.0% | |
| ! | AGAATTAAACATTGACGGAC+GGG | + | chr1_3:56385591-56385610 | None:intergenic | 35.0% |
| ATTCTAAGTGGTGAGTTTGT+AGG | - | chr1_3:56385606-56385625 | Msa0127170:intron | 35.0% | |
| ! | CAATCAATAACTCTAAGGAG+TGG | + | chr1_3:56385803-56385822 | None:intergenic | 35.0% |
| GTACTCAACTTCATACATCA+TGG | + | chr1_3:56385833-56385852 | None:intergenic | 35.0% | |
| !! | TACTCTCTCCGTTCATTTTT+AGG | + | chr1_3:56386120-56386139 | None:intergenic | 35.0% |
| CATTTATCTTGACTGATCTG+TGG | - | chr1_3:56386294-56386313 | Msa0127170:intron | 35.0% | |
| CAAATGAGTTGCAGACTTAA+AGG | + | chr1_3:56386408-56386427 | None:intergenic | 35.0% | |
| AAGTCTGCAACTCATTTGTT+TGG | - | chr1_3:56386410-56386429 | Msa0127170:intron | 35.0% | |
| !! | GAAACTATGCAAAGTTTTGG+TGG | - | chr1_3:56386460-56386479 | Msa0127170:intron | 35.0% |
| !!! | TCTGTTATTTTTTGACAGCC+AGG | - | chr1_3:56386669-56386688 | Msa0127170:intron | 35.0% |
| GATTGACATAGTAACAATCC+TGG | + | chr1_3:56386690-56386709 | None:intergenic | 35.0% | |
| AAAATGTATGTGCATCCATG+TGG | - | chr1_3:56386849-56386868 | Msa0127170:intron | 35.0% | |
| AGTTTAATAGCATCCATTGG+CGG | - | chr1_3:56386899-56386918 | Msa0127170:intron | 35.0% | |
| TCCTCTTATTGTAAACAAGG+AGG | - | chr1_3:56386949-56386968 | Msa0127170:intron | 35.0% | |
| ! | ACCTCCTTGTTTACAATAAG+AGG | + | chr1_3:56386953-56386972 | None:intergenic | 35.0% |
| CTTATTGTAAACAAGGAGGT+CGG | - | chr1_3:56386953-56386972 | Msa0127170:intron | 35.0% | |
| GATGGATACAAAATCTGATG+GGG | + | chr1_3:56387068-56387087 | None:intergenic | 35.0% | |
| CGATGGATACAAAATCTGAT+GGG | + | chr1_3:56387069-56387088 | None:intergenic | 35.0% | |
| ACGATGGATACAAAATCTGA+TGG | + | chr1_3:56387070-56387089 | None:intergenic | 35.0% | |
| TTGTATCCATCGTAGACATT+AGG | - | chr1_3:56387077-56387096 | Msa0127170:intron | 35.0% | |
| CTTAAACCTAATGTCTACGA+TGG | + | chr1_3:56387086-56387105 | None:intergenic | 35.0% | |
| CATCGTAGACATTAGGTTTA+AGG | - | chr1_3:56387084-56387103 | Msa0127170:intron | 35.0% | |
| TGGAATTCCAGATAGAACTT+TGG | + | chr1_3:56387125-56387144 | None:intergenic | 35.0% | |
| ATTCCAAATGCAAACGACAA+CGG | - | chr1_3:56387139-56387158 | Msa0127170:intron | 35.0% | |
| TAGAGATGATAACAATGACG+GGG | - | chr1_3:56387213-56387232 | Msa0127170:intron | 35.0% | |
| ACCGATTACATCAATGGAAA+GGG | - | chr1_3:56387267-56387286 | Msa0127170:intron | 35.0% | |
| TCCCTTTCCATTGATGTAAT+CGG | + | chr1_3:56387271-56387290 | None:intergenic | 35.0% | |
| TTACATCAATGGAAAGGGAA+AGG | - | chr1_3:56387272-56387291 | Msa0127170:intron | 35.0% | |
| ATGACAAAGTCTTTATCCGT+TGG | + | chr1_3:56387424-56387443 | None:intergenic | 35.0% | |
| AAAGACTTTGTCATCCGATT+CGG | - | chr1_3:56387430-56387449 | Msa0127170:intron | 35.0% | |
| AGAAGATGAGAAGTGAAAGT+AGG | - | chr1_3:56387734-56387753 | Msa0127170:intron | 35.0% | |
| !!! | TTGCTGCTTTTATGACATTC+TGG | - | chr1_3:56387785-56387804 | Msa0127170:intron | 35.0% |
| GATAGGTGGAGACCATAAAA+AGG | - | chr1_3:56384233-56384252 | Msa0127170:three_prime_UTR | 40.0% | |
| AACAGGAACATAAGAAGCAG+AGG | + | chr1_3:56384488-56384507 | None:intergenic | 40.0% | |
| ! | AGATGTAAACTCGGTGGTAA+GGG | + | chr1_3:56384918-56384937 | None:intergenic | 40.0% |
| ! | TAGATGTAAACTCGGTGGTA+AGG | + | chr1_3:56384919-56384938 | None:intergenic | 40.0% |
| TATAACCAGACGAGTACTAG+GGG | + | chr1_3:56385216-56385235 | None:intergenic | 40.0% | |
| ! | AATTAAACATTGACGGACGG+GGG | + | chr1_3:56385589-56385608 | None:intergenic | 40.0% |
| ! | GAATTAAACATTGACGGACG+GGG | + | chr1_3:56385590-56385609 | None:intergenic | 40.0% |
| !! | TGGTATTGACCTTTCAACTC+AGG | - | chr1_3:56385766-56385785 | Msa0127170:intron | 40.0% |
| CATCTTAGATGCACAAGAAC+AGG | - | chr1_3:56386181-56386200 | Msa0127170:intron | 40.0% | |
| ACACATGCATAGCACATTTC+TGG | - | chr1_3:56386240-56386259 | Msa0127170:intron | 40.0% | |
| TCTTGACTGATCTGTGGTAT+TGG | - | chr1_3:56386300-56386319 | Msa0127170:intron | 40.0% | |
| GACATATTACGACGACTTGA+TGG | - | chr1_3:56386755-56386774 | Msa0127170:intron | 40.0% | |
| AAGCTAAACTAGCCAATGCA+GGG | + | chr1_3:56386781-56386800 | None:intergenic | 40.0% | |
| ! | ACTTTTGACATCCTCCCTAT+TGG | + | chr1_3:56386882-56386901 | None:intergenic | 40.0% |
| !!! | GAATTTTCTGAAACCGCCAA+TGG | + | chr1_3:56386915-56386934 | None:intergenic | 40.0% |
| ! | AATCATCAGGGTACTCAAGA+TGG | + | chr1_3:56386997-56387016 | None:intergenic | 40.0% |
| ATCTTGAGTACCCTGATGAT+TGG | - | chr1_3:56386996-56387015 | Msa0127170:intron | 40.0% | |
| TGGACTGAAGCCGAATATTA+CGG | - | chr1_3:56387016-56387035 | Msa0127170:intron | 40.0% | |
| !! | GATAGAACTTTGGAGCAGAT+TGG | + | chr1_3:56387115-56387134 | None:intergenic | 40.0% |
| ATCTGCTCCAAAGTTCTATC+TGG | - | chr1_3:56387115-56387134 | Msa0127170:intron | 40.0% | |
| GTGAGAAGATCGATACGAAA+AGG | + | chr1_3:56387184-56387203 | None:intergenic | 40.0% | |
| ! | TCTTCCACCGATTACATCAA+TGG | - | chr1_3:56387261-56387280 | Msa0127170:intron | 40.0% |
| CTTTCCATTGATGTAATCGG+TGG | + | chr1_3:56387268-56387287 | None:intergenic | 40.0% | |
| ! | CACCGATTACATCAATGGAA+AGG | - | chr1_3:56387266-56387285 | Msa0127170:intron | 40.0% |
| ATGGAAAGGGAAAGGAAAGA+CGG | - | chr1_3:56387280-56387299 | Msa0127170:intron | 40.0% | |
| AAAGGAAAGACGGGAAACTA+TGG | - | chr1_3:56387290-56387309 | Msa0127170:intron | 40.0% | |
| GAAGGAAGAATGTCTTTAGC+CGG | + | chr1_3:56387466-56387485 | None:intergenic | 40.0% | |
| CCACTCTAAACTTCATAGCA+AGG | + | chr1_3:56387507-56387526 | None:intergenic | 40.0% | |
| ! | CCTTGCTATGAAGTTTAGAG+TGG | - | chr1_3:56387504-56387523 | Msa0127170:intron | 40.0% |
| AACAGAACTTAGCATGCAGT+TGG | - | chr1_3:56387567-56387586 | Msa0127170:intron | 40.0% | |
| !! | ATGGAAGGTGCTCATGTTAA+TGG | - | chr1_3:56387595-56387614 | Msa0127170:intron | 40.0% |
| GATGAGAAGTGAAAGTAGGT+TGG | - | chr1_3:56387738-56387757 | Msa0127170:intron | 40.0% | |
| AGACACGAATCATGAACACG+AGG | + | chr1_3:56384285-56384304 | None:intergenic | 45.0% | |
| TCTGGGAAACTGAAAGTCAG+TGG | - | chr1_3:56385135-56385154 | Msa0127170:CDS | 45.0% | |
| TTAATTCCAGCCACGGATCT+AGG | - | chr1_3:56385168-56385187 | Msa0127170:CDS | 45.0% | |
| !! | GGATCTAGGCATAGTGGATT+GGG | - | chr1_3:56385182-56385201 | Msa0127170:CDS | 45.0% |
| !! | GATCTAGGCATAGTGGATTG+GGG | - | chr1_3:56385183-56385202 | Msa0127170:CDS | 45.0% |
| !! | ATCTAGGCATAGTGGATTGG+GGG | - | chr1_3:56385184-56385203 | Msa0127170:CDS | 45.0% |
| ATTGACCTTTCAACTCAGGC+AGG | - | chr1_3:56385770-56385789 | Msa0127170:intron | 45.0% | |
| ! | TAACTCTAAGGAGTGGCCTA+GGG | + | chr1_3:56385796-56385815 | None:intergenic | 45.0% |
| ! | ATAACTCTAAGGAGTGGCCT+AGG | + | chr1_3:56385797-56385816 | None:intergenic | 45.0% |
| ! | TTGATGGCAGGTCCTACTAA+AGG | + | chr1_3:56385894-56385913 | None:intergenic | 45.0% |
| CAAGCTAAACTAGCCAATGC+AGG | + | chr1_3:56386782-56386801 | None:intergenic | 45.0% | |
| CATGTGGCCTTCAACCAATA+GGG | - | chr1_3:56386865-56386884 | Msa0127170:intron | 45.0% | |
| ! | ACATCCTCCCTATTGGTTGA+AGG | + | chr1_3:56386875-56386894 | None:intergenic | 45.0% |
| ! | AGATGATAACAATGACGGGG+AGG | - | chr1_3:56387216-56387235 | Msa0127170:intron | 45.0% |
| TGGAAAGGGAAAGGAAAGAC+GGG | - | chr1_3:56387281-56387300 | Msa0127170:intron | 45.0% | |
| CAATGTCTTTGACCGTCAAG+AGG | + | chr1_3:56387400-56387419 | None:intergenic | 45.0% | |
| CTCTTGACGGTCAAAGACAT+TGG | - | chr1_3:56387398-56387417 | Msa0127170:intron | 45.0% | |
| !! | CTTTGTCATCCGATTCGGAT+CGG | - | chr1_3:56387435-56387454 | Msa0127170:intron | 45.0% |
| AGTGGTTCACATCGAAGAAG+AGG | - | chr1_3:56387522-56387541 | Msa0127170:intron | 45.0% | |
| GTGGTTCACATCGAAGAAGA+GGG | - | chr1_3:56387523-56387542 | Msa0127170:intron | 45.0% | |
| TGGTTCACATCGAAGAAGAG+GGG | - | chr1_3:56387524-56387543 | Msa0127170:intron | 45.0% | |
| TAGCATGCAGTTGGAAGACA+TGG | - | chr1_3:56387576-56387595 | Msa0127170:intron | 45.0% | |
| ATGCAGTTGGAAGACATGGA+AGG | - | chr1_3:56387580-56387599 | Msa0127170:intron | 45.0% | |
| !! | AAGAAGCACTTAGCTGCAGA+AGG | - | chr1_3:56387641-56387660 | Msa0127170:intron | 45.0% |
| !!! | TAATTTTTCTAATATATAAT+AGG | - | chr1_3:56385456-56385475 | Msa0127170:intron | 5.0% |
| !! | TTTATATGATAAATATTTAT+AGG | + | chr1_3:56385560-56385579 | None:intergenic | 5.0% |
| ATCCACTATGCCTAGATCCG+TGG | + | chr1_3:56385181-56385200 | None:intergenic | 50.0% | |
| !! | CGGATCTAGGCATAGTGGAT+TGG | - | chr1_3:56385181-56385200 | Msa0127170:CDS | 50.0% |
| TTGCTCGTGTGAGTCCTTGA+GGG | - | chr1_3:56386498-56386517 | Msa0127170:intron | 50.0% | |
| ! | CCTATTGGTTGAAGGCCACA+TGG | + | chr1_3:56386867-56386886 | None:intergenic | 50.0% |
| CCATGTGGCCTTCAACCAAT+AGG | - | chr1_3:56386864-56386883 | Msa0127170:intron | 50.0% | |
| CGGCTTCAGTCCAATCATCA+GGG | + | chr1_3:56387009-56387028 | None:intergenic | 50.0% | |
| TCGGCTTCAGTCCAATCATC+AGG | + | chr1_3:56387010-56387029 | None:intergenic | 50.0% | |
| ! | CCACCGTTGTCGTTTGCATT+TGG | + | chr1_3:56387145-56387164 | None:intergenic | 50.0% |
| CCAAATGCAAACGACAACGG+TGG | - | chr1_3:56387142-56387161 | Msa0127170:intron | 50.0% | |
| ATGCAAACGACAACGGTGGT+TGG | - | chr1_3:56387146-56387165 | Msa0127170:intron | 50.0% | |
| AAGACCGTCGGAGACAGAAA+GGG | + | chr1_3:56387245-56387264 | None:intergenic | 50.0% | |
| TGTAATCGGTGGAAGACCGT+CGG | + | chr1_3:56387257-56387276 | None:intergenic | 50.0% | |
| GTGACGGTCTCCTTCTTAGT+TGG | - | chr1_3:56387323-56387342 | Msa0127170:intron | 50.0% | |
| AAGCGGCTAATCTTGCTAGC+TGG | - | chr1_3:56387371-56387390 | Msa0127170:intron | 50.0% | |
| CGGTCAAAGACATTGGCCAA+CGG | - | chr1_3:56387405-56387424 | Msa0127170:intron | 50.0% | |
| ACTATGCCTAGATCCGTGGC+TGG | + | chr1_3:56385177-56385196 | None:intergenic | 55.0% | |
| AGCCACGGATCTAGGCATAG+TGG | - | chr1_3:56385176-56385195 | Msa0127170:CDS | 55.0% | |
| AACTGCCCCTAGTACTCGTC+TGG | - | chr1_3:56385208-56385227 | Msa0127170:CDS | 55.0% | |
| ! | TAGGGCCTGCCTGAGTTGAA+AGG | + | chr1_3:56385778-56385797 | None:intergenic | 55.0% |
| TTTCAACTCAGGCAGGCCCT+AGG | - | chr1_3:56385777-56385796 | Msa0127170:intron | 55.0% | |
| CTTGCTCGTGTGAGTCCTTG+AGG | - | chr1_3:56386497-56386516 | Msa0127170:intron | 55.0% | |
| AGTCCTTGAGGGCTCTGTTC+TGG | - | chr1_3:56386509-56386528 | Msa0127170:intron | 55.0% | |
| ! | ACGACTTGATGGCCCTGCAT+TGG | - | chr1_3:56386766-56386785 | Msa0127170:intron | 55.0% |
| GTGGCCTTCAACCAATAGGG+AGG | - | chr1_3:56386868-56386887 | Msa0127170:intron | 55.0% | |
| !! | AGGAGGTCGGAGAGTATCAG+TGG | - | chr1_3:56386966-56386985 | Msa0127170:intron | 55.0% |
| GTGACCCTTTCTGTCTCCGA+CGG | - | chr1_3:56387238-56387257 | Msa0127170:intron | 55.0% | |
| GAAGACCGTCGGAGACAGAA+AGG | + | chr1_3:56387246-56387265 | None:intergenic | 55.0% | |
| CTATGGCACGAGCTTCGTGA+CGG | - | chr1_3:56387307-56387326 | Msa0127170:intron | 55.0% | |
| GCTAGCTGGAGTCCTCTTGA+CGG | - | chr1_3:56387385-56387404 | Msa0127170:intron | 55.0% | |
| CCGGTAGAACCGATCCGAAT+CGG | + | chr1_3:56387447-56387466 | None:intergenic | 55.0% | |
| !! | CCGATTCGGATCGGTTCTAC+CGG | - | chr1_3:56387444-56387463 | Msa0127170:intron | 55.0% |
| GCGCCAGAACAGAGCCCTCA+AGG | + | chr1_3:56386515-56386534 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 56384231 | 56387865 | 56384231 | ID=Msa0127170;Name=Msa0127170 |
| chr1_3 | mRNA | 56384231 | 56387865 | 56384231 | ID=Msa0127170-mRNA-1;Parent=Msa0127170;Name=Msa0127170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0.5|0.5|1|1|2|43|380 |
| chr1_3 | exon | 56384231 | 56385409 | 56384231 | ID=Msa0127170-mRNA-1:exon:17775;Parent=Msa0127170-mRNA-1 |
| chr1_3 | exon | 56387859 | 56387865 | 56387859 | ID=Msa0127170-mRNA-1:exon:17774;Parent=Msa0127170-mRNA-1 |
| chr1_3 | CDS | 56387859 | 56387865 | 56387859 | ID=Msa0127170-mRNA-1:cds;Parent=Msa0127170-mRNA-1 |
| chr1_3 | CDS | 56384274 | 56385409 | 56384274 | ID=Msa0127170-mRNA-1:cds;Parent=Msa0127170-mRNA-1 |
| chr1_3 | three_prime_UTR | 56384231 | 56384273 | 56384231 | ID=Msa0127170-mRNA-1:three_prime_utr;Parent=Msa0127170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
