AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077460 MtrunA17_Chr1g0187571 98.922 464 5 0 1 464 1 464 0.0 945
Msa0077460 MtrunA17_Chr1g0166821 86.452 465 55 3 1 464 1 458 0.0 768
Msa0077460 MtrunA17_Chr7g0261501 76.840 462 101 5 2 458 1 461 0.0 703
Msa0077460 MtrunA17_Chr1g0183631 72.451 461 114 8 2 458 1 452 0.0 671
Msa0077460 MtrunA17_Chr2g0329981 60.421 475 171 7 2 462 1 472 0.0 545
Msa0077460 MtrunA17_Chr8g0342821 59.916 479 158 9 2 458 1 467 0.0 536
Msa0077460 MtrunA17_Chr4g0071031 77.143 315 68 2 2 316 1 311 0.0 531
Msa0077460 MtrunA17_Chr1g0167261 71.545 369 73 4 1 366 1 340 0.0 524
Msa0077460 MtrunA17_Chr8g0390211 59.954 432 150 7 2 423 1 419 1.31e-179 509
Msa0077460 MtrunA17_Chr6g0486611 60.373 429 148 8 2 420 1 417 2.72e-179 508
Msa0077460 MtrunA17_Chr2g0299661 59.712 417 149 7 2 417 1 399 1.41e-173 495
Msa0077460 MtrunA17_Chr1g0146151 66.242 314 106 0 2 315 1 314 1.09e-160 461
Msa0077460 MtrunA17_Chr3g0140071 54.005 437 178 5 2 422 1 430 8.31e-160 459
Msa0077460 MtrunA17_Chr7g0214531 39.100 289 157 6 6 278 31 316 1.66e-58 202
Msa0077460 MtrunA17_Chr3g0140431 39.068 279 157 6 6 274 32 307 3.25e-56 196
Msa0077460 MtrunA17_Chr1g0146301 37.993 279 160 6 6 274 118 393 2.92e-55 195
Msa0077460 MtrunA17_Chr1g0213321 37.676 284 163 6 6 278 113 393 1.35e-54 193
Msa0077460 MtrunA17_Chr7g0253211 37.943 282 159 5 10 278 324 602 2.45e-53 192
Msa0077460 MtrunA17_Chr8g0340491 36.879 282 156 6 10 274 128 404 8.76e-50 180
Msa0077460 MtrunA17_Chr5g0405421 25.455 220 147 6 9 220 98 308 4.85e-13 71.2
Msa0077460 MtrunA17_Chr7g0245031 32.857 140 80 4 108 247 250 375 2.19e-12 68.9
Msa0077460 MtrunA17_Chr4g0072831 30.065 153 75 5 8 154 8 134 8.75e-12 66.2
Msa0077460 MtrunA17_Chr7g0267751 27.189 217 134 9 10 216 135 337 2.07e-11 66.2
Msa0077460 MtrunA17_Chr4g0075541 26.241 282 178 10 12 282 89 351 2.50e-11 65.1
Msa0077460 MtrunA17_Chr7g0267771 27.064 218 133 7 10 216 88 290 2.52e-11 65.5
Msa0077460 MtrunA17_Chr1g0203881 24.809 262 167 8 9 251 40 290 3.01e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077460 AT3G23340.1 75.862 464 89 6 2 464 1 442 0.0 713
Msa0077460 AT4G14340.1 74.249 466 101 5 2 464 7 456 0.0 710
Msa0077460 AT4G28540.1 73.950 476 102 9 2 458 5 477 0.0 687
Msa0077460 AT5G43320.1 71.933 481 116 8 2 464 1 480 0.0 686
Msa0077460 AT3G23340.2 73.276 464 87 7 2 464 1 428 0.0 679
Msa0077460 AT1G04440.1 71.338 471 124 7 2 464 1 468 0.0 664
Msa0077460 AT1G03930.1 73.093 472 109 4 2 458 1 469 0.0 657
Msa0077460 AT5G44100.1 72.479 476 110 6 2 458 1 474 0.0 628
Msa0077460 AT5G44100.2 72.479 476 110 6 2 458 1 474 0.0 628
Msa0077460 AT4G14340.2 84.404 327 50 1 2 327 7 333 0.0 597
Msa0077460 AT5G43320.2 80.655 336 54 2 2 329 1 333 0.0 567
Msa0077460 AT5G43320.3 80.655 336 54 2 2 329 1 333 0.0 567
Msa0077460 AT1G72710.1 69.474 380 106 4 2 374 1 377 0.0 544
Msa0077460 AT4G26100.1 63.158 437 146 9 2 433 1 427 0.0 532
Msa0077460 AT5G57015.1 72.619 336 87 3 2 337 1 331 0.0 521
Msa0077460 AT2G19470.1 74.839 310 75 1 2 311 1 307 0.0 517
Msa0077460 AT4G28880.3 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0077460 AT4G28880.2 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0077460 AT4G28880.1 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0077460 AT4G28880.4 60.386 414 139 6 2 395 1 409 2.60e-176 500
Msa0077460 AT4G28860.2 70.717 321 89 2 2 322 1 316 6.79e-175 495
Msa0077460 AT4G28860.1 70.717 321 89 2 2 322 1 316 3.41e-174 495
Msa0077460 AT4G08800.1 64.430 298 74 2 2 299 1 266 2.86e-143 411
Msa0077460 AT2G25760.2 40.000 280 153 4 10 274 107 386 4.02e-60 209
Msa0077460 AT2G25760.1 39.643 280 151 5 10 274 107 383 2.14e-57 201
Msa0077460 AT3G13670.1 36.678 289 164 6 6 278 131 416 2.17e-54 193
Msa0077460 AT5G18190.2 37.234 282 161 5 10 278 130 408 4.54e-54 192
Msa0077460 AT5G18190.1 37.234 282 161 5 10 278 130 408 4.54e-54 192
Msa0077460 AT3G03940.1 37.234 282 161 5 10 278 140 418 4.79e-54 192
Msa0077460 AT3G06030.1 25.926 216 141 5 9 214 67 273 1.20e-12 70.5
Msa0077460 AT2G38910.1 26.667 285 156 10 2 246 119 390 3.86e-12 68.9
Msa0077460 AT3G50530.1 26.872 227 143 7 6 220 144 359 4.05e-12 68.9
Msa0077460 AT1G09000.1 25.581 215 141 4 10 214 69 274 3.69e-11 65.9
Msa0077460 AT5G39440.1 27.354 223 147 6 10 228 19 230 3.77e-11 65.5
Msa0077460 AT2G17890.1 23.423 222 149 7 9 220 107 317 4.26e-11 65.5
Msa0077460 AT1G09000.2 25.581 215 141 4 10 214 69 274 8.40e-11 64.7
Msa0077460 AT1G30270.1 28.049 246 139 12 8 237 29 252 8.74e-11 64.3

Find 183 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGATTGGTGTTGGGTTT+TGG 0.197653 1_2:-54402752 None:intergenic
TCATTTAATAATCGTGCTTC+TGG 0.214021 1_2:+54408941 Msa0077460:CDS
GACTCCTCTTATATCTCTTT+TGG 0.225564 1_2:+54409205 Msa0077460:three_prime_UTR
CTGGGAAAATTTCGGGATTC+CGG 0.230740 1_2:-54402698 None:intergenic
AAAATTGCTATGTAAGTTTC+TGG 0.243029 1_2:+54409375 Msa0077460:three_prime_UTR
TGTCACTTGGCACTGGAAAA+AGG 0.247125 1_2:+54409008 Msa0077460:CDS
TTTGAAATTTAGCTTGAATT+AGG 0.260045 1_2:+54403188 Msa0077460:five_prime_UTR
TTTAGAAATTTGTTAATATA+TGG 0.266874 1_2:+54409286 Msa0077460:three_prime_UTR
CGGGTATTCCCCATTTAAAA+TGG 0.292102 1_2:+54404685 Msa0077460:CDS
GCTTGATAAGACAGGTCTTT+TGG 0.292884 1_2:-54408801 None:intergenic
TTTCTCTCTGTTCTGTTTGT+GGG 0.298944 1_2:+54403009 Msa0077460:five_prime_UTR
ATTATTAAATGATGATGATT+TGG 0.313853 1_2:-54408930 None:intergenic
TTCAAGCTCGGAAGGAAAAT+TGG 0.317743 1_2:+54403253 Msa0077460:CDS
TTGAGTCGATGAAGTGGAAT+TGG 0.320093 1_2:-54402812 None:intergenic
GTGATGATGGATCATGTAAT+TGG 0.322381 1_2:+54403223 Msa0077460:exon
CTTGGTTCACCAGAAGAGTT+TGG 0.328063 1_2:-54408830 None:intergenic
TGAGTCGATGAAGTGGAATT+GGG 0.330154 1_2:-54402811 None:intergenic
CACAAATTGGATCTAGTTCC+AGG 0.331261 1_2:+54408051 Msa0077460:CDS
TGGGAAAATTTCGGGATTCC+GGG 0.335282 1_2:-54402697 None:intergenic
AAAATTGGTGGTGGGTCATT+TGG 0.338722 1_2:+54403268 Msa0077460:CDS
AGCAGCCGTCCAAACTCTTC+TGG 0.341980 1_2:+54408821 Msa0077460:CDS
TAAGATTGTGCTGGAAATAT+AGG 0.343670 1_2:+54403113 Msa0077460:five_prime_UTR
AGAGGAAGTTGCTCTTAAAT+TGG 0.345528 1_2:+54403428 Msa0077460:CDS
TTTAACCTTCTCGGATGAAT+AGG 0.346286 1_2:-54407915 None:intergenic
GATGTGGAAAGAACAGAAAA+TGG 0.354567 1_2:-54402603 None:intergenic
TCATAAAGAAATTCCTTGAA+TGG 0.354599 1_2:-54409169 None:intergenic
TAGATTCTCGGGTGCAGTTC+AGG 0.359219 1_2:+54408538 Msa0077460:CDS
ATTCCCCATTTAAAATGGTT+TGG 0.360672 1_2:+54404690 Msa0077460:CDS
GAATTCAAATTTAACCTTCT+CGG 0.361148 1_2:-54407924 None:intergenic
ATATTGAAGTATCCACAAAT+TGG 0.362130 1_2:+54408038 Msa0077460:CDS
AATAGTGTGGAAAGAGGATA+TGG 0.362313 1_2:-54402770 None:intergenic
CATTTAATAATCGTGCTTCT+GGG 0.365719 1_2:+54408942 Msa0077460:CDS
GAGAGAGTAGAACGGCCTTC+AGG 0.366937 1_2:+54408233 Msa0077460:CDS
ACTTGTTTAACTATTGCAAT+AGG 0.374193 1_2:+54404769 Msa0077460:CDS
TTCAGGTGGACCAGAGATTC+GGG 0.376581 1_2:+54408514 Msa0077460:intron
TGACCTCCTTGGACCAAGTC+TGG 0.378575 1_2:+54404743 Msa0077460:CDS
TTTCAGGTGGACCAGAGATT+CGG 0.384714 1_2:+54408513 Msa0077460:intron
TTTAGCTTGAATTAGGAGAT+TGG 0.391245 1_2:+54403195 Msa0077460:five_prime_UTR
GCGGGTTATAATACCTCTAT+AGG 0.393119 1_2:-54407658 None:intergenic
TATGTTCTAGTGTACATTCA+TGG 0.401338 1_2:+54409430 Msa0077460:three_prime_UTR
GTCATAAATCCAGGACAATC+AGG 0.401717 1_2:+54408209 Msa0077460:CDS
ACTCTCTCTCCTGATTGTCC+TGG 0.401749 1_2:-54408218 None:intergenic
GTACATTCATGGAATGGAAT+TGG 0.404103 1_2:+54409441 Msa0077460:three_prime_UTR
AGTTTGATTATGTGTTTGAT+TGG 0.406009 1_2:+54408012 Msa0077460:CDS
TGGAATGGAATTGGCGAGTA+AGG 0.413433 1_2:+54409450 Msa0077460:three_prime_UTR
AGAGGATATGGATTGGTGTT+GGG 0.415851 1_2:-54402758 None:intergenic
ACAAAGCAGAAGAGATGATC+TGG 0.417037 1_2:+54407441 Msa0077460:CDS
AAATTGTACATGCTTCTTCA+AGG 0.419496 1_2:+54404501 Msa0077460:CDS
GGAATTGGCGAGTAAGGATT+GGG 0.419680 1_2:+54409456 Msa0077460:three_prime_UTR
ATTTCTTTATGAAGAAGCTT+TGG 0.421445 1_2:+54409180 Msa0077460:three_prime_UTR
TTTAGGACGCAAAGCAAATC+AGG 0.425650 1_2:+54404993 Msa0077460:CDS
TTTATGACTGGTTTCCCACT+TGG 0.426175 1_2:-54408194 None:intergenic
AAAATAGGTAAAATATGAAA+AGG 0.427523 1_2:-54402858 None:intergenic
TTTAAAATGGTTTGGAGTTG+AGG 0.433665 1_2:+54404698 Msa0077460:CDS
GTCATTTGGAGAGCTCTACT+TGG 0.434739 1_2:+54403282 Msa0077460:CDS
TTAGCTTGAATTAGGAGATT+GGG 0.435311 1_2:+54403196 Msa0077460:five_prime_UTR
CATCCATGCTGAAATATTCA+TGG 0.435352 1_2:-54409235 None:intergenic
ACAAATTGATGATTTGTTCA+AGG 0.437148 1_2:-54409498 None:intergenic
GATTGTCCTGGATTTATGAC+TGG 0.439156 1_2:-54408206 None:intergenic
TTAAAATGGTTTGGAGTTGA+GGG 0.440355 1_2:+54404699 Msa0077460:CDS
GTAGTGAAGTTGAGGATGTT+TGG 0.441312 1_2:-54404472 None:intergenic
CGGCTAGAGCGGCTTTCACT+TGG 0.441375 1_2:-54408848 None:intergenic
GTGTGCATGGTGATCATTCC+AGG 0.443890 1_2:+54408591 Msa0077460:CDS
AACTGTTTCCCAGTCTCCCT+TGG 0.448040 1_2:+54407569 Msa0077460:intron
GCAAGTGTTAATACTCATCT+AGG 0.449215 1_2:+54407306 Msa0077460:CDS
CAGGTATACATAATTGATTA+CGG 0.449576 1_2:+54406641 Msa0077460:intron
ACATGTTGTCTCTTCGTGAA+TGG 0.449603 1_2:-54409261 None:intergenic
ACCGCAACGATCGGCAGTAA+TGG 0.450799 1_2:-54407846 None:intergenic
TCAGGTGTTAATGTACAAAC+TGG 0.455615 1_2:+54403405 Msa0077460:intron
TGGAATTGGCGAGTAAGGAT+TGG 0.457588 1_2:+54409455 Msa0077460:three_prime_UTR
TCCAATGTTGGGTCCATTCA+AGG 0.462914 1_2:+54409156 Msa0077460:three_prime_UTR
TAAAGTACTCACCCGGGCCC+TGG 0.463637 1_2:-54408069 None:intergenic
TGCTACTGCTCAAGAGCAAT+CGG 0.463680 1_2:-54408868 None:intergenic
CATGTTGTCTCTTCGTGAAT+GGG 0.465371 1_2:-54409260 None:intergenic
TGAGGATGTTTGGTCTTCAC+AGG 0.466320 1_2:-54404462 None:intergenic
CATGAATATTTCAGCATGGA+TGG 0.469973 1_2:+54409236 Msa0077460:three_prime_UTR
AGAGATTCGGGATAGATTCT+CGG 0.471393 1_2:+54408526 Msa0077460:CDS
AATTTCGGGATTCCGGGAAA+AGG 0.474919 1_2:-54402691 None:intergenic
GAGAATCTATCCCGAATCTC+TGG 0.479581 1_2:-54408524 None:intergenic
AACACCAAAAGAGATATAAG+AGG 0.479596 1_2:-54409209 None:intergenic
TTAAACAAGTCTTCCAGACT+TGG 0.485095 1_2:-54404756 None:intergenic
GAACTCCTGTCACTTGGCAC+TGG 0.485260 1_2:+54409001 Msa0077460:CDS
TTGGATCTAGTTCCAGGGCC+CGG 0.486826 1_2:+54408057 Msa0077460:CDS
CCTTGGCAAGGTTTGAAAGC+TGG 0.488040 1_2:+54407586 Msa0077460:CDS
CAGGCATTTGCAAGAAGGAA+TGG 0.490425 1_2:+54408557 Msa0077460:CDS
AAGAGGATATGGATTGGTGT+TGG 0.492124 1_2:-54402759 None:intergenic
TGGATCTAGTTCCAGGGCCC+GGG 0.493698 1_2:+54408058 Msa0077460:CDS
AGCTTTGAACTCCTGTCACT+TGG 0.494711 1_2:+54408995 Msa0077460:CDS
CTCTTGAGATACGAATAATC+AGG 0.495706 1_2:-54407880 None:intergenic
CAGTTCAGGCATTTGCAAGA+AGG 0.496735 1_2:+54408552 Msa0077460:CDS
TTTCCCAGTCTCCCTTGGCA+AGG 0.501011 1_2:+54407574 Msa0077460:intron
GAAGATGCTTACTCCTATAG+AGG 0.503426 1_2:+54407645 Msa0077460:CDS
GAGTATTAACACTTGCATAC+CGG 0.504831 1_2:-54407299 None:intergenic
GAGATTCGGGATAGATTCTC+GGG 0.507677 1_2:+54408527 Msa0077460:CDS
AAAAGTTGTGATGTGAAGTC+AGG 0.509486 1_2:-54402638 None:intergenic
CTGGAACTAGATCCAATTTG+TGG 0.509685 1_2:-54408050 None:intergenic
AAATAGGTAAAATATGAAAA+GGG 0.510670 1_2:-54402857 None:intergenic
CTCATCTGAAGATCTATGCC+TGG 0.513835 1_2:-54408609 None:intergenic
TGGATCTGTCTTTGAGGACA+AGG 0.515041 1_2:-54402732 None:intergenic
AATTGTACATGCTTCTTCAA+GGG 0.515160 1_2:+54404502 Msa0077460:CDS
TTTGCAAGAAGGAATGGATC+TGG 0.516230 1_2:+54408563 Msa0077460:CDS
GAAGTCTGCTTGATCAGAGT+TGG 0.517980 1_2:-54409041 None:intergenic
AAACAAACATGGTACCTGTA+TGG 0.519200 1_2:-54406707 None:intergenic
CTAACCACGTCTTTAGAAGA+TGG 0.525542 1_2:-54408632 None:intergenic
TTAAATTTGAGTCGATGAAG+TGG 0.529967 1_2:-54402818 None:intergenic
TTTGACTCGTAGTGAAGTTG+AGG 0.532224 1_2:-54404480 None:intergenic
CCAGCTTTCAAACCTTGCCA+AGG 0.533106 1_2:-54407586 None:intergenic
TCCTTGAATGGACCCAACAT+TGG 0.534362 1_2:-54409157 None:intergenic
GTTAATACTCATCTAGGAGT+TGG 0.534550 1_2:+54407312 Msa0077460:CDS
AGTATTAACACTTGCATACC+GGG 0.534714 1_2:-54407298 None:intergenic
GGGAAACCAGTCATAAATCC+AGG 0.534889 1_2:+54408200 Msa0077460:CDS
TCCATTACTGCCGATCGTTG+CGG 0.536213 1_2:+54407845 Msa0077460:CDS
TGAATGGACCCAACATTGGA+TGG 0.539367 1_2:-54409153 None:intergenic
TCATTTGGAGAGCTCTACTT+GGG 0.539914 1_2:+54403283 Msa0077460:CDS
GGACGGCTGCTTGATAAGAC+AGG 0.541596 1_2:-54408809 None:intergenic
CACACAAGCATATACCATAC+AGG 0.541677 1_2:+54406693 Msa0077460:CDS
CTCGGAAGGAAAATTGGTGG+TGG 0.543152 1_2:+54403259 Msa0077460:CDS
CAGCTTTCAAACCTTGCCAA+GGG 0.543251 1_2:-54407585 None:intergenic
TATCTTCAAACCGCAACGAT+CGG 0.543597 1_2:-54407855 None:intergenic
CGTGACCTATTCATCCGAGA+AGG 0.545158 1_2:+54407910 Msa0077460:CDS
TTTGTGCAAGGCACATCCGT+TGG 0.545816 1_2:+54407807 Msa0077460:CDS
GGCTGCTTGTAATAATTACA+TGG 0.548094 1_2:+54409307 Msa0077460:three_prime_UTR
GATTTGTTCAAGGAGAAGAT+TGG 0.550673 1_2:-54409488 None:intergenic
GCCATGGCAATTGACCTCCT+TGG 0.551055 1_2:+54404732 Msa0077460:CDS
CTTGAGTCAAGCAAGGGTCA+TGG 0.555144 1_2:+54409063 Msa0077460:three_prime_UTR
AGTTGTCAGGCTTTATATCA+CGG 0.558010 1_2:-54404960 None:intergenic
ATTGTACATGCTTCTTCAAG+GGG 0.562314 1_2:+54404503 Msa0077460:CDS
AAAACCTCACTGGAACTGCC+CGG 0.564841 1_2:+54407280 Msa0077460:CDS
TCTAGTGTACATTCATGGAA+TGG 0.565103 1_2:+54409435 Msa0077460:three_prime_UTR
ATAGTGAATAGTGTGGAAAG+AGG 0.572143 1_2:-54402776 None:intergenic
CAGGTGGGATAGATGAGATG+TGG 0.573028 1_2:-54402619 None:intergenic
GGATCTGGCCATGGTGTGCA+TGG 0.573110 1_2:+54408578 Msa0077460:CDS
CGTGCTTCTGGGGCAAGAGG+TGG 0.573464 1_2:+54408953 Msa0077460:CDS
GTGGAAAATTCAAGCTCGGA+AGG 0.575556 1_2:+54403245 Msa0077460:CDS
GAGTCGATGAAGTGGAATTG+GGG 0.577689 1_2:-54402810 None:intergenic
AATTGATGTGTGTAGTAGAG+TGG 0.579591 1_2:+54403164 Msa0077460:five_prime_UTR
ATTGGTGGAAAATTCAAGCT+CGG 0.586349 1_2:+54403241 Msa0077460:CDS
AGAGATGATCTGGAATCACT+TGG 0.587254 1_2:+54407451 Msa0077460:CDS
CTTCCATGAATATTTCAGCA+TGG 0.593378 1_2:+54409232 Msa0077460:three_prime_UTR
AATCGTGCTTCTGGGGCAAG+AGG 0.593465 1_2:+54408950 Msa0077460:CDS
GTTCACCAGAAGAGTTTGGA+CGG 0.595743 1_2:-54408826 None:intergenic
ATTTAATAATCGTGCTTCTG+GGG 0.598016 1_2:+54408943 Msa0077460:CDS
AGTTGTGATGTGAAGTCAGG+TGG 0.598192 1_2:-54402635 None:intergenic
TCCAAGGAGGTCAATTGCCA+TGG 0.600545 1_2:-54404733 None:intergenic
CAGGCTTTATATCACGGTGA+AGG 0.608260 1_2:-54404954 None:intergenic
AATTAAGATAGTGAATAGTG+TGG 0.609487 1_2:-54402783 None:intergenic
CAGACTTCTTGAGTCAAGCA+AGG 0.611739 1_2:+54409056 Msa0077460:three_prime_UTR
GCTTGTGTGTGTGAAGATCT+CGG 0.612004 1_2:-54406679 None:intergenic
AAGTATGATGTAAATTCCAA+CGG 0.613345 1_2:-54407823 None:intergenic
GTTGTGATGTGAAGTCAGGT+GGG 0.617901 1_2:-54402634 None:intergenic
AGTCTTCCAGACTTGGTCCA+AGG 0.617923 1_2:-54404749 None:intergenic
TACACTAGAACATAGTACTC+AGG 0.619256 1_2:-54409421 None:intergenic
ACAAATTGGATCTAGTTCCA+GGG 0.625877 1_2:+54408052 Msa0077460:CDS
GTTGAGTACATGCACTCCCG+TGG 0.629864 1_2:+54404928 Msa0077460:CDS
ATGATGGATCATGTAATTGG+TGG 0.630712 1_2:+54403226 Msa0077460:CDS
AAGCTCGGAAGGAAAATTGG+TGG 0.634557 1_2:+54403256 Msa0077460:CDS
TGTGGAAAGAGGATATGGAT+TGG 0.636850 1_2:-54402765 None:intergenic
TCGGAAGGAAAATTGGTGGT+GGG 0.637716 1_2:+54403260 Msa0077460:CDS
AGACTTCTTGAGTCAAGCAA+GGG 0.639265 1_2:+54409057 Msa0077460:three_prime_UTR
AGAAGGAATGGATCTGGCCA+TGG 0.643782 1_2:+54408569 Msa0077460:CDS
TGAGGGTGACTACAATGCCA+TGG 0.644969 1_2:+54404716 Msa0077460:CDS
GGTACAAAATATGCATCACA+AGG 0.646634 1_2:-54409400 None:intergenic
TGTTAATGTACAAACTGGAG+AGG 0.648733 1_2:+54403410 Msa0077460:CDS
ACTACTCAGAGGACTCAACC+AGG 0.650293 1_2:+54408899 Msa0077460:CDS
CCGCGTAGCTCTTCTCGTCA+CGG 0.653072 1_2:+54408770 Msa0077460:CDS
TGTAGCAAGCTGATTCTGAG+AGG 0.654308 1_2:+54408747 Msa0077460:intron
AATGATCACCATGCACACCA+TGG 0.661002 1_2:-54408586 None:intergenic
GATGATTTGGACTCAAGACC+TGG 0.661178 1_2:-54408917 None:intergenic
ATCACGGTGAAGGAAACCAC+GGG 0.662401 1_2:-54404944 None:intergenic
TCAAGAGCAATCGGCTAGAG+CGG 0.663121 1_2:-54408859 None:intergenic
AATCAGGAGAGAGAGTAGAA+CGG 0.663172 1_2:+54408225 Msa0077460:CDS
CATACCGGGCAGTTCCAGTG+AGG 0.669824 1_2:-54407284 None:intergenic
TATCACGGTGAAGGAAACCA+CGG 0.680680 1_2:-54404945 None:intergenic
CTTCCAGACTTGGTCCAAGG+AGG 0.681469 1_2:-54404746 None:intergenic
TTGTACATGCTTCTTCAAGG+GGG 0.696070 1_2:+54404504 Msa0077460:CDS
GTGGTCGTGATGATACACTC+AGG 0.697269 1_2:+54408972 Msa0077460:CDS
GAATTGGCGAGTAAGGATTG+GGG 0.697779 1_2:+54409457 Msa0077460:three_prime_UTR
TGAGCCATCTTCTAAAGACG+TGG 0.710607 1_2:+54408628 Msa0077460:CDS
GCAGACTATCTACTACTCAG+AGG 0.717657 1_2:+54408888 Msa0077460:CDS
CAGAGCATGAGCAATCAACG+AGG 0.723216 1_2:-54409122 None:intergenic
AGAGCATGAGCAATCAACGA+GGG 0.733194 1_2:-54409121 None:intergenic
GTACAAAATATGCATCACAA+GGG 0.738084 1_2:-54409399 None:intergenic
CCGTGACGAGAAGAGCTACG+CGG 0.803013 1_2:-54408770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAATAAACATTAATTT+GGG - chr1_2:54405820-54405839 None:intergenic 10.0%
!! AAACTAAATAAACATTAATT+TGG - chr1_2:54405821-54405840 None:intergenic 10.0%
!! TTAAATATTTAAGAAAATAC+AGG - chr1_2:54406316-54406335 None:intergenic 10.0%
!!! CTTTTTTTATTTTAATAACT+CGG + chr1_2:54407544-54407563 Msa0077460:intron 10.0%
!!! TTTTTTTATTTTAATAACTC+GGG + chr1_2:54407545-54407564 Msa0077460:intron 10.0%
!!! TTTAGAAATTTGTTAATATA+TGG + chr1_2:54409286-54409305 Msa0077460:three_prime_UTR 10.0%
!! AAATAGGTAAAATATGAAAA+GGG - chr1_2:54402860-54402879 None:intergenic 15.0%
!! AAAATAGGTAAAATATGAAA+AGG - chr1_2:54402861-54402880 None:intergenic 15.0%
!!! TAAAAATTCCTTTCTTTTAA+AGG - chr1_2:54403857-54403876 None:intergenic 15.0%
!!! TTAAAAGAAAGGAATTTTTA+AGG + chr1_2:54403857-54403876 Msa0077460:intron 15.0%
!!! TAAATTTCATTCTTTAGTTT+AGG - chr1_2:54405416-54405435 None:intergenic 15.0%
!!! TATTATTTAGTTTTGATAGT+TGG + chr1_2:54406064-54406083 Msa0077460:intron 15.0%
!!! AAATTTTATAAGGATGTAAA+TGG + chr1_2:54407021-54407040 Msa0077460:intron 15.0%
!!! AATTTTATAAGGATGTAAAT+GGG + chr1_2:54407022-54407041 Msa0077460:intron 15.0%
!!! ATTATTAAATGATGATGATT+TGG - chr1_2:54408933-54408952 None:intergenic 15.0%
!!! TTTGAAATTTAGCTTGAATT+AGG + chr1_2:54403188-54403207 Msa0077460:five_prime_UTR 20.0%
!!! CATAGATGGTTTTTTTTTTT+TGG + chr1_2:54403508-54403527 Msa0077460:intron 20.0%
!!! GTTGCTATATTTTTGTTTAT+TGG + chr1_2:54403755-54403774 Msa0077460:intron 20.0%
!! TTAGAGACATAACTAATAAA+TGG + chr1_2:54403987-54404006 Msa0077460:intron 20.0%
!! TAATAAATGGAAAGATCATA+TGG + chr1_2:54404000-54404019 Msa0077460:intron 20.0%
!! AAAGATCAAGCTAATTAAAA+AGG - chr1_2:54404262-54404281 None:intergenic 20.0%
!!! AGCTTTCTTTTAAAAGTATA+GGG - chr1_2:54404862-54404881 None:intergenic 20.0%
!!! ATTTTTACTTATAAGCAACT+CGG + chr1_2:54404887-54404906 Msa0077460:intron 20.0%
!! AAAGTAAATAATCTATCCTA+TGG - chr1_2:54405238-54405257 None:intergenic 20.0%
!! TAAATAATCCCAATAAATAG+AGG - chr1_2:54405339-54405358 None:intergenic 20.0%
!! GTGAAAAATATGAAAAGTAA+AGG + chr1_2:54405384-54405403 Msa0077460:intron 20.0%
!!! ATCCTTCTTTTATAGATTTA+AGG + chr1_2:54405699-54405718 Msa0077460:intron 20.0%
!! TTCCTTAAATCTATAAAAGA+AGG - chr1_2:54405704-54405723 None:intergenic 20.0%
!!! TTTTATAGATTTAAGGAATC+AGG + chr1_2:54405706-54405725 Msa0077460:intron 20.0%
!! TAATTTGGGTATATCAATAT+TGG - chr1_2:54405806-54405825 None:intergenic 20.0%
!! CAAAAGTAATCATAATATCA+AGG - chr1_2:54406001-54406020 None:intergenic 20.0%
!!! CTTGATATTATGATTACTTT+TGG + chr1_2:54405999-54406018 Msa0077460:intron 20.0%
!!! TAGGATTTTTATGAACTAAT+TGG + chr1_2:54406118-54406137 Msa0077460:intron 20.0%
!!! ATTTTACTACTTTTTCTACT+TGG + chr1_2:54406175-54406194 Msa0077460:intron 20.0%
!!! TTACTTCCATTTTGATTTTT+AGG + chr1_2:54406219-54406238 Msa0077460:intron 20.0%
!! AGAATACCTAAAAATCAAAA+TGG - chr1_2:54406228-54406247 None:intergenic 20.0%
!! GTATTAAAAAAACACTAAGT+TGG + chr1_2:54406512-54406531 Msa0077460:intron 20.0%
!!! AATTGTTTTTAATACATTGC+AGG + chr1_2:54406622-54406641 Msa0077460:intron 20.0%
!!! CAATGTTTTTAAACTTCAAA+AGG - chr1_2:54406794-54406813 None:intergenic 20.0%
!!! AGTTTAAAAACATTGTTTTG+TGG + chr1_2:54406799-54406818 Msa0077460:intron 20.0%
!!! TTATTTTAACATAAATGAGC+TGG - chr1_2:54406895-54406914 None:intergenic 20.0%
!! TAATCAAAACAATCACATAA+AGG - chr1_2:54407694-54407713 None:intergenic 20.0%
!!! TTTTGATTACTAGAATACTT+GGG + chr1_2:54407705-54407724 Msa0077460:intron 20.0%
!! TTCTTTGCAACATATATAAT+TGG - chr1_2:54407760-54407779 None:intergenic 20.0%
!!! ATTTTTCCCTCTAATAATAA+TGG + chr1_2:54408289-54408308 Msa0077460:intron 20.0%
!! AATATGCCATTATTATTAGA+GGG - chr1_2:54408298-54408317 None:intergenic 20.0%
!! TAAAGTTCTATTGTTCTTTA+TGG + chr1_2:54408327-54408346 Msa0077460:intron 20.0%
!! TGCTACAAAAATTAAGAATT+AGG - chr1_2:54408734-54408753 None:intergenic 20.0%
! AATTAAGATAGTGAATAGTG+TGG - chr1_2:54402786-54402805 None:intergenic 25.0%
!! TCATATTTTACCTATTTTCG+AGG + chr1_2:54402863-54402882 Msa0077460:five_prime_UTR 25.0%
!!! GTTTTCTTTTTTGAGGTATT+GGG + chr1_2:54403031-54403050 Msa0077460:five_prime_UTR 25.0%
!! ACACTTTTGTATCTCAATTT+TGG + chr1_2:54403087-54403106 Msa0077460:five_prime_UTR 25.0%
!!! ACCTTATATATTGTTTTGCT+AGG + chr1_2:54403322-54403341 Msa0077460:intron 25.0%
! TCCTAGCAAAACAATATATA+AGG - chr1_2:54403326-54403345 None:intergenic 25.0%
!!! TGAAGTTATTGACTTCTATT+GGG + chr1_2:54403455-54403474 Msa0077460:intron 25.0%
! AAACAATATGCATGTCAATA+AGG + chr1_2:54403568-54403587 Msa0077460:intron 25.0%
! ATTTGACAATGAAAAACCTA+AGG + chr1_2:54403898-54403917 Msa0077460:intron 25.0%
! TTTGACAATGAAAAACCTAA+GGG + chr1_2:54403899-54403918 Msa0077460:intron 25.0%
!!! CTGTTTTTCTATTTTTCCAA+TGG - chr1_2:54404148-54404167 None:intergenic 25.0%
! AGAAAAACAGAGAAAACAAA+TGG + chr1_2:54404158-54404177 Msa0077460:intron 25.0%
! TTGAGGGGAAAAATAATAAA+AGG - chr1_2:54404543-54404562 None:intergenic 25.0%
!! AACTCCAAACCATTTTAAAT+GGG - chr1_2:54404697-54404716 None:intergenic 25.0%
! ACTTGTTTAACTATTGCAAT+AGG + chr1_2:54404769-54404788 Msa0077460:CDS 25.0%
!!! GAGCTTTCTTTTAAAAGTAT+AGG - chr1_2:54404863-54404882 None:intergenic 25.0%
! AATCACAACTGAAACTAATT+CGG - chr1_2:54405096-54405115 None:intergenic 25.0%
!!! TCAACTTAATTGATTTGATG+AGG + chr1_2:54405148-54405167 Msa0077460:intron 25.0%
! GAGATCATTAGGAAATTATT+AGG - chr1_2:54405195-54405214 None:intergenic 25.0%
!! AAAGTATTAAAGGAAAAGCA+AGG - chr1_2:54405290-54405309 None:intergenic 25.0%
!! ATTTCATTCTTTAGTTTAGG+AGG - chr1_2:54405413-54405432 None:intergenic 25.0%
! TATTCTTCCATATATATCGA+GGG - chr1_2:54405486-54405505 None:intergenic 25.0%
! ATATTCTTCCATATATATCG+AGG - chr1_2:54405487-54405506 None:intergenic 25.0%
!!! CTAAGATGTTATGTTTTGAA+TGG + chr1_2:54405657-54405676 Msa0077460:intron 25.0%
!!! ATGTTATGTTTTGAATGGAA+GGG + chr1_2:54405662-54405681 Msa0077460:intron 25.0%
!!! TATGTGTTTCTGGAAATAAA+AGG - chr1_2:54405748-54405767 None:intergenic 25.0%
!!! TCTTGCTTTAAGATAGAAAA+TGG - chr1_2:54405953-54405972 None:intergenic 25.0%
! TATACACAATTCAACTATGT+AGG + chr1_2:54406099-54406118 Msa0077460:intron 25.0%
!!! GATTTTTAGGTATTCTTTTC+AGG + chr1_2:54406232-54406251 Msa0077460:intron 25.0%
!!! TTTAACTTGATTTCCAAGAA+TGG - chr1_2:54406431-54406450 None:intergenic 25.0%
! CAGGTATACATAATTGATTA+CGG + chr1_2:54406641-54406660 Msa0077460:intron 25.0%
! TTAAACTTCAAAAGGTGAAA+AGG - chr1_2:54406786-54406805 None:intergenic 25.0%
!!! TAGACTTGATATTCCTTTTT+TGG + chr1_2:54406917-54406936 Msa0077460:intron 25.0%
! ATCATTATGTATTCAAGACA+AGG - chr1_2:54406962-54406981 None:intergenic 25.0%
!! CAGACAGGTTAAATTTTATA+AGG + chr1_2:54407011-54407030 Msa0077460:intron 25.0%
!! CAAGTTTGGGAATATTATTT+TGG - chr1_2:54407092-54407111 None:intergenic 25.0%
! AACGATAAATAAACAAGTGA+TGG - chr1_2:54407175-54407194 None:intergenic 25.0%
!!! GTTTTGATTACTAGAATACT+TGG + chr1_2:54407704-54407723 Msa0077460:intron 25.0%
! AAGTATGATGTAAATTCCAA+CGG - chr1_2:54407826-54407845 None:intergenic 25.0%
! GAATTCAAATTTAACCTTCT+CGG - chr1_2:54407927-54407946 None:intergenic 25.0%
! ATTTAGTAATGTTTCTTCAC+AGG + chr1_2:54407984-54408003 Msa0077460:intron 25.0%
! AGTTTGATTATGTGTTTGAT+TGG + chr1_2:54408012-54408031 Msa0077460:CDS 25.0%
!! ATATTGAAGTATCCACAAAT+TGG + chr1_2:54408038-54408057 Msa0077460:CDS 25.0%
!!! TGTATTTCTAGCAAAACTAA+AGG + chr1_2:54408133-54408152 Msa0077460:intron 25.0%
! GAATATGCCATTATTATTAG+AGG - chr1_2:54408299-54408318 None:intergenic 25.0%
! GATTGTTATGCTTATATTTC+AGG + chr1_2:54408497-54408516 Msa0077460:intron 25.0%
!! TATATTTTCCATCCAATGTT+GGG + chr1_2:54409145-54409164 Msa0077460:three_prime_UTR 25.0%
! TCATAAAGAAATTCCTTGAA+TGG - chr1_2:54409172-54409191 None:intergenic 25.0%
! ATTTCTTTATGAAGAAGCTT+TGG + chr1_2:54409180-54409199 Msa0077460:three_prime_UTR 25.0%
!!! ATTTTTTTCTGCTGAAGAAA+AGG + chr1_2:54409333-54409352 Msa0077460:three_prime_UTR 25.0%
! AAAATTGCTATGTAAGTTTC+TGG + chr1_2:54409375-54409394 Msa0077460:three_prime_UTR 25.0%
!!! ACAAATTGATGATTTGTTCA+AGG - chr1_2:54409501-54409520 None:intergenic 25.0%
!! TTTTTGCTTAAATGCAGTTT+TGG + chr1_2:54409533-54409552 Msa0077460:three_prime_UTR 25.0%
!!! TTGCAGTTTTAGCAAAATAA+GGG - chr1_2:54409561-54409580 None:intergenic 25.0%
!!! ATTGCAGTTTTAGCAAAATA+AGG - chr1_2:54409562-54409581 None:intergenic 25.0%
! AATTTTGCTGGGAAAATTTC+GGG - chr1_2:54402708-54402727 None:intergenic 30.0%
! GAATTTTGCTGGGAAAATTT+CGG - chr1_2:54402709-54402728 None:intergenic 30.0%
TTAAATTTGAGTCGATGAAG+TGG - chr1_2:54402821-54402840 None:intergenic 30.0%
!! TTTGTGGGTTTTCTTTTTTG+AGG + chr1_2:54403024-54403043 Msa0077460:five_prime_UTR 30.0%
!!! GGTTTTCTTTTTTGAGGTAT+TGG + chr1_2:54403030-54403049 Msa0077460:five_prime_UTR 30.0%
TAAGATTGTGCTGGAAATAT+AGG + chr1_2:54403113-54403132 Msa0077460:five_prime_UTR 30.0%
!! TTTAGCTTGAATTAGGAGAT+TGG + chr1_2:54403195-54403214 Msa0077460:five_prime_UTR 30.0%
! TTAGCTTGAATTAGGAGATT+GGG + chr1_2:54403196-54403215 Msa0077460:five_prime_UTR 30.0%
! TCGTTTTCTATGCTTTTGTT+TGG + chr1_2:54403381-54403400 Msa0077460:intron 30.0%
!! GTGAAGTTATTGACTTCTAT+TGG + chr1_2:54403454-54403473 Msa0077460:intron 30.0%
!!! AGGAATGTTGATTTTTCTAC+TGG + chr1_2:54403483-54403502 Msa0077460:intron 30.0%
ATATATATGTGGTCAAGTAG+TGG + chr1_2:54403649-54403668 Msa0077460:intron 30.0%
TGGTTACTTGAATTTCAGTT+AGG + chr1_2:54403775-54403794 Msa0077460:intron 30.0%
! ACATGTTGCCTTTAAAAGAA+AGG + chr1_2:54403846-54403865 Msa0077460:intron 30.0%
TTTAAGGATAACGATTGAGT+TGG + chr1_2:54403873-54403892 Msa0077460:intron 30.0%
ATGGCTATAGTATGATCAAA+TGG + chr1_2:54404019-54404038 Msa0077460:intron 30.0%
CAGACTATATTTGTAACCAT+TGG + chr1_2:54404129-54404148 Msa0077460:intron 30.0%
AAGCTAATTAAAAAGGATGC+TGG - chr1_2:54404255-54404274 None:intergenic 30.0%
! AGCTTGATCTTTTAAACAAC+TGG + chr1_2:54404270-54404289 Msa0077460:intron 30.0%
TGAATGCAGAAATGAAAATC+TGG - chr1_2:54404348-54404367 None:intergenic 30.0%
TGACAAACAAAGGAAGAAAA+AGG - chr1_2:54404438-54404457 None:intergenic 30.0%
!! TTTTTCTTCCTTTGTTTGTC+AGG + chr1_2:54404437-54404456 Msa0077460:intron 30.0%
AAATTGTACATGCTTCTTCA+AGG + chr1_2:54404501-54404520 Msa0077460:CDS 30.0%
AATTGTACATGCTTCTTCAA+GGG + chr1_2:54404502-54404521 Msa0077460:CDS 30.0%
! ATGAAGAAGCATAATTTGAG+GGG - chr1_2:54404558-54404577 None:intergenic 30.0%
! GATGAAGAAGCATAATTTGA+GGG - chr1_2:54404559-54404578 None:intergenic 30.0%
! AGATGAAGAAGCATAATTTG+AGG - chr1_2:54404560-54404579 None:intergenic 30.0%
!! TTCCTCTTTTCTTTTTGAAG+CGG + chr1_2:54404665-54404684 Msa0077460:intron 30.0%
! ATTCCCCATTTAAAATGGTT+TGG + chr1_2:54404690-54404709 Msa0077460:CDS 30.0%
! ACTCCAAACCATTTTAAATG+GGG - chr1_2:54404696-54404715 None:intergenic 30.0%
! CAACTCCAAACCATTTTAAA+TGG - chr1_2:54404698-54404717 None:intergenic 30.0%
! TTTAAAATGGTTTGGAGTTG+AGG + chr1_2:54404698-54404717 Msa0077460:CDS 30.0%
! TTAAAATGGTTTGGAGTTGA+GGG + chr1_2:54404699-54404718 Msa0077460:CDS 30.0%
! AAAGCCTGACAACTTTTTAA+TGG + chr1_2:54404969-54404988 Msa0077460:CDS 30.0%
! AAGCCTGACAACTTTTTAAT+GGG + chr1_2:54404970-54404989 Msa0077460:CDS 30.0%
AAACCCATTAAAAAGTTGTC+AGG - chr1_2:54404976-54404995 None:intergenic 30.0%
!!! GACAACTTTTTAATGGGTTT+AGG + chr1_2:54404976-54404995 Msa0077460:CDS 30.0%
ATAATCTATCCTATGGATAG+TGG - chr1_2:54405231-54405250 None:intergenic 30.0%
TATTAAAGGAAAAGCAAGGT+CGG - chr1_2:54405286-54405305 None:intergenic 30.0%
! TGGGTGAGATAAAGTATTAA+AGG - chr1_2:54405300-54405319 None:intergenic 30.0%
AATCGTACTCGTATTTATTG+AGG + chr1_2:54405362-54405381 Msa0077460:intron 30.0%
! ATCTTTTTGTTAAGATGCCA+TGG - chr1_2:54405589-54405608 None:intergenic 30.0%
!! GATGTTATGTTTTGAATGGA+AGG + chr1_2:54405661-54405680 Msa0077460:intron 30.0%
!! TGTTATGTTTTGAATGGAAG+GGG + chr1_2:54405663-54405682 Msa0077460:intron 30.0%
! AACTGCAATGAAGTTTTACA+TGG - chr1_2:54405854-54405873 None:intergenic 30.0%
! TTCATGTCTCTAATTTTGAG+AGG + chr1_2:54405901-54405920 Msa0077460:intron 30.0%
TAATATCAAGGCTGACAAAT+GGG - chr1_2:54405989-54406008 None:intergenic 30.0%
ATAATATCAAGGCTGACAAA+TGG - chr1_2:54405990-54406009 None:intergenic 30.0%
! AATTGGACAGTATTTCTACT+AGG + chr1_2:54406135-54406154 Msa0077460:intron 30.0%
AACAGAACTCAATGAATCAA+AGG - chr1_2:54406201-54406220 None:intergenic 30.0%
GAATTAGATGTAACTACAGA+AGG - chr1_2:54406292-54406311 None:intergenic 30.0%
GAATTGAAAAATTGTACTCC+TGG + chr1_2:54406346-54406365 Msa0077460:intron 30.0%
TTTCCAAGAATGGCTTATTA+TGG - chr1_2:54406421-54406440 None:intergenic 30.0%
GGAAATCAAGTTAAACATGA+AGG + chr1_2:54406436-54406455 Msa0077460:intron 30.0%
! TGTTTGAGTCTGAATTTGTT+TGG - chr1_2:54406465-54406484 None:intergenic 30.0%
! CTAAATTTGTTCCTTGAGTA+CGG + chr1_2:54406743-54406762 Msa0077460:intron 30.0%
! TAAATTTGTTCCTTGAGTAC+GGG + chr1_2:54406744-54406763 Msa0077460:intron 30.0%
!!! TATTCCTTTTTTGGATTCCT+TGG + chr1_2:54406926-54406945 Msa0077460:intron 30.0%
!!! ATTCCTTTTTTGGATTCCTT+GGG + chr1_2:54406927-54406946 Msa0077460:intron 30.0%
!!! ATTATTTTGGATGCTGATTC+AGG - chr1_2:54407079-54407098 None:intergenic 30.0%
! TTGTGCTAATCAACTCTTTT+CGG + chr1_2:54408157-54408176 Msa0077460:intron 30.0%
TGTTATGCTTATATTTCAGG+TGG + chr1_2:54408500-54408519 Msa0077460:intron 30.0%
!! CCTTCATAACAAAGTTTTGA+AGG - chr1_2:54408687-54408706 None:intergenic 30.0%
! CCTTCAAAACTTTGTTATGA+AGG + chr1_2:54408684-54408703 Msa0077460:intron 30.0%
TCATTTAATAATCGTGCTTC+TGG + chr1_2:54408941-54408960 Msa0077460:CDS 30.0%
CATTTAATAATCGTGCTTCT+GGG + chr1_2:54408942-54408961 Msa0077460:CDS 30.0%
ATTTAATAATCGTGCTTCTG+GGG + chr1_2:54408943-54408962 Msa0077460:CDS 30.0%
! GTATATTTTCCATCCAATGT+TGG + chr1_2:54409144-54409163 Msa0077460:three_prime_UTR 30.0%
AACACCAAAAGAGATATAAG+AGG - chr1_2:54409212-54409231 None:intergenic 30.0%
GTACAAAATATGCATCACAA+GGG - chr1_2:54409402-54409421 None:intergenic 30.0%
TATGTTCTAGTGTACATTCA+TGG + chr1_2:54409430-54409449 Msa0077460:three_prime_UTR 30.0%
!! TGCAGTTTTAGCAAAATAAG+GGG - chr1_2:54409560-54409579 None:intergenic 30.0%
GATGTGGAAAGAACAGAAAA+TGG - chr1_2:54402606-54402625 None:intergenic 35.0%
AAAAGTTGTGATGTGAAGTC+AGG - chr1_2:54402641-54402660 None:intergenic 35.0%
!! CTACTTTTCTTTCCTTTTCC+CGG + chr1_2:54402679-54402698 Msa0077460:five_prime_UTR 35.0%
AATAGTGTGGAAAGAGGATA+TGG - chr1_2:54402773-54402792 None:intergenic 35.0%
ATAGTGAATAGTGTGGAAAG+AGG - chr1_2:54402779-54402798 None:intergenic 35.0%
! TGAAAAGGGTGTGAGAAAAA+TGG - chr1_2:54402846-54402865 None:intergenic 35.0%
!! TACCTATTTTCGAGGAAAAG+AGG + chr1_2:54402871-54402890 Msa0077460:five_prime_UTR 35.0%
! TTCCTCTTTTCCTCGAAAAT+AGG - chr1_2:54402876-54402895 None:intergenic 35.0%
! TTTTCTCTCTGTTCTGTTTG+TGG + chr1_2:54403008-54403027 Msa0077460:five_prime_UTR 35.0%
TTTCTCTCTGTTCTGTTTGT+GGG + chr1_2:54403009-54403028 Msa0077460:five_prime_UTR 35.0%
!! TTTTGGATCTAAGATTGTGC+TGG + chr1_2:54403104-54403123 Msa0077460:five_prime_UTR 35.0%
AATTGATGTGTGTAGTAGAG+TGG + chr1_2:54403164-54403183 Msa0077460:five_prime_UTR 35.0%
!! GTGATGATGGATCATGTAAT+TGG + chr1_2:54403223-54403242 Msa0077460:exon 35.0%
!! ATGATGGATCATGTAATTGG+TGG + chr1_2:54403226-54403245 Msa0077460:CDS 35.0%
ATTGGTGGAAAATTCAAGCT+CGG + chr1_2:54403241-54403260 Msa0077460:CDS 35.0%
!! TCTATGCTTTTGTTTGGTTC+AGG + chr1_2:54403387-54403406 Msa0077460:intron 35.0%
TCAGGTGTTAATGTACAAAC+TGG + chr1_2:54403405-54403424 Msa0077460:intron 35.0%
TGTTAATGTACAAACTGGAG+AGG + chr1_2:54403410-54403429 Msa0077460:CDS 35.0%
AGAGGAAGTTGCTCTTAAAT+TGG + chr1_2:54403428-54403447 Msa0077460:CDS 35.0%
! TTTTTCTACTGGTGCATAGA+TGG + chr1_2:54403494-54403513 Msa0077460:intron 35.0%
CAATGCATTGCAATATGAAG+GGG - chr1_2:54403683-54403702 None:intergenic 35.0%
GCAATGCATTGCAATATGAA+GGG - chr1_2:54403684-54403703 None:intergenic 35.0%
ATGAAAAACCTAAGGGAGAT+TGG + chr1_2:54403906-54403925 Msa0077460:intron 35.0%
ACATAATGTACCTAGAGTCT+TGG + chr1_2:54404068-54404087 Msa0077460:intron 35.0%
GTTTACATCATTTGACATGC+TGG + chr1_2:54404196-54404215 Msa0077460:intron 35.0%
CAATATCTATCCACATCTGT+TGG + chr1_2:54404228-54404247 Msa0077460:intron 35.0%
!! AGCTTAACTTTGAAACAGCT+AGG - chr1_2:54404398-54404417 None:intergenic 35.0%
ATTGTACATGCTTCTTCAAG+GGG + chr1_2:54404503-54404522 Msa0077460:CDS 35.0%
!!! TCCTCTTTTCTTTTTGAAGC+GGG + chr1_2:54404666-54404685 Msa0077460:intron 35.0%
TTAAACAAGTCTTCCAGACT+TGG - chr1_2:54404759-54404778 None:intergenic 35.0%
! AGTTGTCAGGCTTTATATCA+CGG - chr1_2:54404963-54404982 None:intergenic 35.0%
CATAAATGACCAACCAGATA+AGG - chr1_2:54405053-54405072 None:intergenic 35.0%
ACTACACACTAGAGATCATT+AGG - chr1_2:54405206-54405225 None:intergenic 35.0%
AATAAATAGAGGCTACACAC+AGG - chr1_2:54405328-54405347 None:intergenic 35.0%
TGTGTGTAGCCTCTATTTAT+TGG + chr1_2:54405327-54405346 Msa0077460:intron 35.0%
GTGTGTAGCCTCTATTTATT+GGG + chr1_2:54405328-54405347 Msa0077460:intron 35.0%
TTCCATTCCCTCGATATATA+TGG + chr1_2:54405476-54405495 Msa0077460:intron 35.0%
TTCCATATATATCGAGGGAA+TGG - chr1_2:54405481-54405500 None:intergenic 35.0%
!! ACAACATGGCTTTATCAGAT+CGG - chr1_2:54405540-54405559 None:intergenic 35.0%
CCAAGACAGAGAATGTTATT+TGG - chr1_2:54405621-54405640 None:intergenic 35.0%
CCAAATAACATTCTCTGTCT+TGG + chr1_2:54405618-54405637 Msa0077460:intron 35.0%
AGTTGAAAGCTATGTGTTTC+TGG - chr1_2:54405758-54405777 None:intergenic 35.0%
AATATCAAGGCTGACAAATG+GGG - chr1_2:54405988-54406007 None:intergenic 35.0%
TACTAGGAGTCTGTTTATTG+AGG + chr1_2:54406151-54406170 Msa0077460:intron 35.0%
TAGATGTAACTACAGAAGGT+GGG - chr1_2:54406288-54406307 None:intergenic 35.0%
TTAGATGTAACTACAGAAGG+TGG - chr1_2:54406289-54406308 None:intergenic 35.0%
! ATAGTGTGTAGTTGGTTCTT+AGG - chr1_2:54406377-54406396 None:intergenic 35.0%
AGACCATAATAAGCCATTCT+TGG + chr1_2:54406415-54406434 Msa0077460:intron 35.0%
TCAGACTCAAACAATGTCAT+AGG + chr1_2:54406472-54406491 Msa0077460:intron 35.0%
AAACAAACATGGTACCTGTA+TGG - chr1_2:54406710-54406729 None:intergenic 35.0%
CATGCTACAGTAAACAAACA+TGG - chr1_2:54406721-54406740 None:intergenic 35.0%
! AAATTTGTTCCTTGAGTACG+GGG + chr1_2:54406745-54406764 Msa0077460:intron 35.0%
GGTGAAAAGGAAACATGATA+TGG - chr1_2:54406773-54406792 None:intergenic 35.0%
ACAGAAGCAAACAACATACT+GGG - chr1_2:54406832-54406851 None:intergenic 35.0%
TACAGAAGCAAACAACATAC+TGG - chr1_2:54406833-54406852 None:intergenic 35.0%
CATAATGATTGTTGTGTTGC+TGG + chr1_2:54406973-54406992 Msa0077460:intron 35.0%
! ATTGTTGTGTTGCTGGATTT+GGG + chr1_2:54406980-54406999 Msa0077460:intron 35.0%
CTTCAGGTAATGACACATAT+GGG - chr1_2:54407152-54407171 None:intergenic 35.0%
AATAAACAAGTGATGGCTTC+AGG - chr1_2:54407168-54407187 None:intergenic 35.0%
ATGGTCATTCACAGAAGAAA+AGG - chr1_2:54407237-54407256 None:intergenic 35.0%
! TTTTCTTCTGTGAATGACCA+TGG + chr1_2:54407236-54407255 Msa0077460:intron 35.0%
AGTATTAACACTTGCATACC+GGG - chr1_2:54407301-54407320 None:intergenic 35.0%
GAGTATTAACACTTGCATAC+CGG - chr1_2:54407302-54407321 None:intergenic 35.0%
GCAAGTGTTAATACTCATCT+AGG + chr1_2:54407306-54407325 Msa0077460:CDS 35.0%
GTTAATACTCATCTAGGAGT+TGG + chr1_2:54407312-54407331 Msa0077460:CDS 35.0%
!! GTACTCATGTACTTTTTGAG+AGG + chr1_2:54407478-54407497 Msa0077460:CDS 35.0%
!! TCATGTACTTTTTGAGAGGA+AGG + chr1_2:54407482-54407501 Msa0077460:CDS 35.0%
CTCTTGAGATACGAATAATC+AGG - chr1_2:54407883-54407902 None:intergenic 35.0%
TTTAACCTTCTCGGATGAAT+AGG - chr1_2:54407918-54407937 None:intergenic 35.0%
! ACAAATTGGATCTAGTTCCA+GGG + chr1_2:54408052-54408071 Msa0077460:CDS 35.0%
ACACAACACTTCACAAAATG+AGG - chr1_2:54408106-54408125 None:intergenic 35.0%
!!! TTCTTTTTCAACAGCCAAGT+GGG + chr1_2:54408180-54408199 Msa0077460:intron 35.0%
ATTTCAGTCCTACAGTTGTA+TGG + chr1_2:54408446-54408465 Msa0077460:intron 35.0%
TCCTACAGTTGTATGGTAAA+AGG + chr1_2:54408453-54408472 Msa0077460:intron 35.0%
TTGTTTGTCAGTTTGTGTGT+TGG + chr1_2:54408658-54408677 Msa0077460:intron 35.0%
TGTTTGTCAGTTTGTGTGTT+GGG + chr1_2:54408659-54408678 Msa0077460:intron 35.0%
! GACTCCTCTTATATCTCTTT+TGG + chr1_2:54409205-54409224 Msa0077460:three_prime_UTR 35.0%
CTTCCATGAATATTTCAGCA+TGG + chr1_2:54409232-54409251 Msa0077460:three_prime_UTR 35.0%
CATCCATGCTGAAATATTCA+TGG - chr1_2:54409238-54409257 None:intergenic 35.0%
CATGAATATTTCAGCATGGA+TGG + chr1_2:54409236-54409255 Msa0077460:three_prime_UTR 35.0%
GGCTGCTTGTAATAATTACA+TGG + chr1_2:54409307-54409326 Msa0077460:three_prime_UTR 35.0%
GGTACAAAATATGCATCACA+AGG - chr1_2:54409403-54409422 None:intergenic 35.0%
TACACTAGAACATAGTACTC+AGG - chr1_2:54409424-54409443 None:intergenic 35.0%
TCTAGTGTACATTCATGGAA+TGG + chr1_2:54409435-54409454 Msa0077460:three_prime_UTR 35.0%
GTACATTCATGGAATGGAAT+TGG + chr1_2:54409441-54409460 Msa0077460:three_prime_UTR 35.0%
! GATTTGTTCAAGGAGAAGAT+TGG - chr1_2:54409491-54409510 None:intergenic 35.0%
! GACAAGGTGTGAATTTTGCT+GGG - chr1_2:54402719-54402738 None:intergenic 40.0%
!!! TATGGATTGGTGTTGGGTTT+TGG - chr1_2:54402755-54402774 None:intergenic 40.0%
!! AGAGGATATGGATTGGTGTT+GGG - chr1_2:54402761-54402780 None:intergenic 40.0%
!! AAGAGGATATGGATTGGTGT+TGG - chr1_2:54402762-54402781 None:intergenic 40.0%
TGTGGAAAGAGGATATGGAT+TGG - chr1_2:54402768-54402787 None:intergenic 40.0%
TGAGTCGATGAAGTGGAATT+GGG - chr1_2:54402814-54402833 None:intergenic 40.0%
TTGAGTCGATGAAGTGGAAT+TGG - chr1_2:54402815-54402834 None:intergenic 40.0%
!! ATCGATTTTGCGTGCAATTC+AGG + chr1_2:54402923-54402942 Msa0077460:five_prime_UTR 40.0%
! TCGATTTTGCGTGCAATTCA+GGG + chr1_2:54402924-54402943 Msa0077460:five_prime_UTR 40.0%
!! GAGATTGGGTTTTGTGATGA+TGG + chr1_2:54403210-54403229 Msa0077460:exon 40.0%
TTCAAGCTCGGAAGGAAAAT+TGG + chr1_2:54403253-54403272 Msa0077460:CDS 40.0%
!! AAAATTGGTGGTGGGTCATT+TGG + chr1_2:54403268-54403287 Msa0077460:CDS 40.0%
TCATTTGGAGAGCTCTACTT+GGG + chr1_2:54403283-54403302 Msa0077460:CDS 40.0%
TTGACTTCTATTGGGTGCTT+AGG + chr1_2:54403463-54403482 Msa0077460:intron 40.0%
GGCAATGCATTGCAATATGA+AGG - chr1_2:54403685-54403704 None:intergenic 40.0%
!! CATAGCTAAGTTGGTACTAG+GGG - chr1_2:54403706-54403725 None:intergenic 40.0%
!! GCATAGCTAAGTTGGTACTA+GGG - chr1_2:54403707-54403726 None:intergenic 40.0%
!! AGCATAGCTAAGTTGGTACT+AGG - chr1_2:54403708-54403727 None:intergenic 40.0%
TACCAACTTAGCTATGCTCA+CGG + chr1_2:54403710-54403729 Msa0077460:intron 40.0%
GTACAATATGCCAAGACTCT+AGG - chr1_2:54404081-54404100 None:intergenic 40.0%
GCATTCAGTCAGTCTTAGTT+TGG + chr1_2:54404361-54404380 Msa0077460:intron 40.0%
GTAGTGAAGTTGAGGATGTT+TGG - chr1_2:54404475-54404494 None:intergenic 40.0%
! TTTGACTCGTAGTGAAGTTG+AGG - chr1_2:54404483-54404502 None:intergenic 40.0%
TTGTACATGCTTCTTCAAGG+GGG + chr1_2:54404504-54404523 Msa0077460:CDS 40.0%
ACCCGCTTCAAAAAGAAAAG+AGG - chr1_2:54404670-54404689 None:intergenic 40.0%
CGGGTATTCCCCATTTAAAA+TGG + chr1_2:54404685-54404704 Msa0077460:CDS 40.0%
TGCAGATCAGCTAGTAAGTA+TGG + chr1_2:54404821-54404840 Msa0077460:intron 40.0%
! TTTAGGACGCAAAGCAAATC+AGG + chr1_2:54404993-54405012 Msa0077460:CDS 40.0%
AGTCAATGCTGGATATGTAG+TGG - chr1_2:54405021-54405040 None:intergenic 40.0%
! GACTTGAATTCAGCCTTATC+TGG + chr1_2:54405037-54405056 Msa0077460:intron 40.0%
! TGAATTCAGCCTTATCTGGT+TGG + chr1_2:54405041-54405060 Msa0077460:intron 40.0%
GTGTAGTATCCACTATCCAT+AGG + chr1_2:54405219-54405238 Msa0077460:intron 40.0%
AGGCTACACACAGGTTTATT+GGG - chr1_2:54405319-54405338 None:intergenic 40.0%
! GGAGAGAAGCTTTAACAACA+TGG - chr1_2:54405554-54405573 None:intergenic 40.0%
TTAAGATGCCATGGCTTGAA+TGG - chr1_2:54405580-54405599 None:intergenic 40.0%
! GTTGGTTCTTAGGAAATACC+AGG - chr1_2:54406367-54406386 None:intergenic 40.0%
TGACTAGGATAGTGTGTAGT+TGG - chr1_2:54406385-54406404 None:intergenic 40.0%
GGTCTCAGCTTAAATTGACT+AGG - chr1_2:54406400-54406419 None:intergenic 40.0%
CAATGTCATAGGAACTTGAC+AGG + chr1_2:54406483-54406502 Msa0077460:intron 40.0%
CAGCACAGAATTTCAGCTAT+TGG - chr1_2:54406574-54406593 None:intergenic 40.0%
!!! GATCTCGGAACTTTTTTGCA+AGG - chr1_2:54406667-54406686 None:intergenic 40.0%
CACACAAGCATATACCATAC+AGG + chr1_2:54406693-54406712 Msa0077460:CDS 40.0%
CAACCCAAGGAATCCAAAAA+AGG - chr1_2:54406933-54406952 None:intergenic 40.0%
! GATTGTTGTGTTGCTGGATT+TGG + chr1_2:54406979-54406998 Msa0077460:intron 40.0%
! GAGGATTTTCTTGCATATGC+AGG - chr1_2:54407130-54407149 None:intergenic 40.0%
GCTTCAGGTAATGACACATA+TGG - chr1_2:54407153-54407172 None:intergenic 40.0%
GAAAAGGAGACGAATGTGTA+GGG - chr1_2:54407221-54407240 None:intergenic 40.0%
AGAAAAGGAGACGAATGTGT+AGG - chr1_2:54407222-54407241 None:intergenic 40.0%
! TGACCATGGTACTTTTGTTC+AGG + chr1_2:54407250-54407269 Msa0077460:intron 40.0%
! GACCATGGTACTTTTGTTCA+GGG + chr1_2:54407251-54407270 Msa0077460:intron 40.0%
!! TTCCCTGAACAAAAGTACCA+TGG - chr1_2:54407256-54407275 None:intergenic 40.0%
AGGGAAAACAAAAACCTCAC+TGG + chr1_2:54407270-54407289 Msa0077460:intron 40.0%
ACAAAGCAGAAGAGATGATC+TGG + chr1_2:54407441-54407460 Msa0077460:CDS 40.0%
! AGAGATGATCTGGAATCACT+TGG + chr1_2:54407451-54407470 Msa0077460:CDS 40.0%
GAAGATGCTTACTCCTATAG+AGG + chr1_2:54407645-54407664 Msa0077460:CDS 40.0%
! GCGGGTTATAATACCTCTAT+AGG - chr1_2:54407661-54407680 None:intergenic 40.0%
TATCTTCAAACCGCAACGAT+CGG - chr1_2:54407858-54407877 None:intergenic 40.0%
CTGGAACTAGATCCAATTTG+TGG - chr1_2:54408053-54408072 None:intergenic 40.0%
! CACAAATTGGATCTAGTTCC+AGG + chr1_2:54408051-54408070 Msa0077460:CDS 40.0%
! TGCTATTAAAGTACTCACCC+GGG - chr1_2:54408078-54408097 None:intergenic 40.0%
! GTGCTATTAAAGTACTCACC+CGG - chr1_2:54408079-54408098 None:intergenic 40.0%
!!! GTTCTTTTTCAACAGCCAAG+TGG + chr1_2:54408179-54408198 Msa0077460:intron 40.0%
!! TTTATGACTGGTTTCCCACT+TGG - chr1_2:54408197-54408216 None:intergenic 40.0%
GATTGTCCTGGATTTATGAC+TGG - chr1_2:54408209-54408228 None:intergenic 40.0%
GTCATAAATCCAGGACAATC+AGG + chr1_2:54408209-54408228 Msa0077460:CDS 40.0%
AATCAGGAGAGAGAGTAGAA+CGG + chr1_2:54408225-54408244 Msa0077460:CDS 40.0%
TGTTGAAGGAAGAAACCTGA+AGG - chr1_2:54408251-54408270 None:intergenic 40.0%
!! ATTCCAGATCTTGCTGTTGA+AGG - chr1_2:54408265-54408284 None:intergenic 40.0%
! GCCTTTTACCATACAACTGT+AGG - chr1_2:54408457-54408476 None:intergenic 40.0%
! AGTTGTATGGTAAAAGGCGT+TGG + chr1_2:54408459-54408478 Msa0077460:intron 40.0%
AGAGATTCGGGATAGATTCT+CGG + chr1_2:54408526-54408545 Msa0077460:CDS 40.0%
TTTGCAAGAAGGAATGGATC+TGG + chr1_2:54408563-54408582 Msa0077460:CDS 40.0%
! CTAACCACGTCTTTAGAAGA+TGG - chr1_2:54408635-54408654 None:intergenic 40.0%
! GCTTGATAAGACAGGTCTTT+TGG - chr1_2:54408804-54408823 None:intergenic 40.0%
AGACTTCTTGAGTCAAGCAA+GGG + chr1_2:54409057-54409076 Msa0077460:three_prime_UTR 40.0%
CATGTTGTCTCTTCGTGAAT+GGG - chr1_2:54409263-54409282 None:intergenic 40.0%
ACATGTTGTCTCTTCGTGAA+TGG - chr1_2:54409264-54409283 None:intergenic 40.0%
GTTGTGATGTGAAGTCAGGT+GGG - chr1_2:54402637-54402656 None:intergenic 45.0%
AGTTGTGATGTGAAGTCAGG+TGG - chr1_2:54402638-54402657 None:intergenic 45.0%
AATTTCGGGATTCCGGGAAA+AGG - chr1_2:54402694-54402713 None:intergenic 45.0%
TGGGAAAATTTCGGGATTCC+GGG - chr1_2:54402700-54402719 None:intergenic 45.0%
CTGGGAAAATTTCGGGATTC+CGG - chr1_2:54402701-54402720 None:intergenic 45.0%
! GGACAAGGTGTGAATTTTGC+TGG - chr1_2:54402720-54402739 None:intergenic 45.0%
! TGGATCTGTCTTTGAGGACA+AGG - chr1_2:54402735-54402754 None:intergenic 45.0%
!!! GGGTTTTGGATCTGTCTTTG+AGG - chr1_2:54402741-54402760 None:intergenic 45.0%
GAGTCGATGAAGTGGAATTG+GGG - chr1_2:54402813-54402832 None:intergenic 45.0%
GTGGAAAATTCAAGCTCGGA+AGG + chr1_2:54403245-54403264 Msa0077460:CDS 45.0%
AAGCTCGGAAGGAAAATTGG+TGG + chr1_2:54403256-54403275 Msa0077460:CDS 45.0%
! TCGGAAGGAAAATTGGTGGT+GGG + chr1_2:54403260-54403279 Msa0077460:CDS 45.0%
GTCATTTGGAGAGCTCTACT+TGG + chr1_2:54403282-54403301 Msa0077460:CDS 45.0%
ACCAACTTAGCTATGCTCAC+GGG + chr1_2:54403711-54403730 Msa0077460:intron 45.0%
ACCTAAGGGAGATTGGTACT+TGG + chr1_2:54403913-54403932 Msa0077460:intron 45.0%
CACAGGTTCCTGACAAACAA+AGG - chr1_2:54404448-54404467 None:intergenic 45.0%
! TGAGGATGTTTGGTCTTCAC+AGG - chr1_2:54404465-54404484 None:intergenic 45.0%
TATCACGGTGAAGGAAACCA+CGG - chr1_2:54404948-54404967 None:intergenic 45.0%
! CAGGCTTTATATCACGGTGA+AGG - chr1_2:54404957-54404976 None:intergenic 45.0%
GGCTGAATTCAAGTCAATGC+TGG - chr1_2:54405032-54405051 None:intergenic 45.0%
GAGGCTACACACAGGTTTAT+TGG - chr1_2:54405320-54405339 None:intergenic 45.0%
CGGTGTAAAGCTTTCTTGCA+GGG - chr1_2:54405520-54405539 None:intergenic 45.0%
TCGGTGTAAAGCTTTCTTGC+AGG - chr1_2:54405521-54405540 None:intergenic 45.0%
!! TGTTTTGAATGGAAGGGGAC+TGG + chr1_2:54405668-54405687 Msa0077460:intron 45.0%
GCTTGTGTGTGTGAAGATCT+CGG - chr1_2:54406682-54406701 None:intergenic 45.0%
AGCAAACAACATACTGGGCA+GGG - chr1_2:54406827-54406846 None:intergenic 45.0%
AAGCAAACAACATACTGGGC+AGG - chr1_2:54406828-54406847 None:intergenic 45.0%
! GTTGCTGGATTTGGGATAAC+TGG + chr1_2:54406988-54407007 Msa0077460:intron 45.0%
! ATTTGGGATAACTGGCAGAC+AGG + chr1_2:54406996-54407015 Msa0077460:intron 45.0%
! GCAGGTGAAGGTTCAAGTTT+GGG - chr1_2:54407105-54407124 None:intergenic 45.0%
! AGCAGGTGAAGGTTCAAGTT+TGG - chr1_2:54407106-54407125 None:intergenic 45.0%
CAGGTAATGACACATATGGG+AGG - chr1_2:54407149-54407168 None:intergenic 45.0%
CAGCTTTCAAACCTTGCCAA+GGG - chr1_2:54407588-54407607 None:intergenic 45.0%
ACATAAAGGCTGCTTGCAAG+CGG - chr1_2:54407680-54407699 None:intergenic 45.0%
ATTGCATGAGTTTCTGCGTC+AGG + chr1_2:54407783-54407802 Msa0077460:intron 45.0%
GGGAAACCAGTCATAAATCC+AGG + chr1_2:54408200-54408219 Msa0077460:CDS 45.0%
CTTCCTTCAACAGCAAGATC+TGG + chr1_2:54408259-54408278 Msa0077460:intron 45.0%
! GCGTTGGTCAAGTTCAACTA+AGG + chr1_2:54408475-54408494 Msa0077460:intron 45.0%
! TTTCAGGTGGACCAGAGATT+CGG + chr1_2:54408513-54408532 Msa0077460:intron 45.0%
GAGAATCTATCCCGAATCTC+TGG - chr1_2:54408527-54408546 None:intergenic 45.0%
GAGATTCGGGATAGATTCTC+GGG + chr1_2:54408527-54408546 Msa0077460:CDS 45.0%
CAGTTCAGGCATTTGCAAGA+AGG + chr1_2:54408552-54408571 Msa0077460:CDS 45.0%
CAGGCATTTGCAAGAAGGAA+TGG + chr1_2:54408557-54408576 Msa0077460:CDS 45.0%
AATGATCACCATGCACACCA+TGG - chr1_2:54408589-54408608 None:intergenic 45.0%
CTCATCTGAAGATCTATGCC+TGG - chr1_2:54408612-54408631 None:intergenic 45.0%
! TGAGCCATCTTCTAAAGACG+TGG + chr1_2:54408628-54408647 Msa0077460:CDS 45.0%
! TGTAGCAAGCTGATTCTGAG+AGG + chr1_2:54408747-54408766 Msa0077460:intron 45.0%
GTTCACCAGAAGAGTTTGGA+CGG - chr1_2:54408829-54408848 None:intergenic 45.0%
CTTGGTTCACCAGAAGAGTT+TGG - chr1_2:54408833-54408852 None:intergenic 45.0%
TGCTACTGCTCAAGAGCAAT+CGG - chr1_2:54408871-54408890 None:intergenic 45.0%
GCAGACTATCTACTACTCAG+AGG + chr1_2:54408888-54408907 Msa0077460:CDS 45.0%
! GATGATTTGGACTCAAGACC+TGG - chr1_2:54408920-54408939 None:intergenic 45.0%
!! AGCTTTGAACTCCTGTCACT+TGG + chr1_2:54408995-54409014 Msa0077460:CDS 45.0%
! TTTTTCCAGTGCCAAGTGAC+AGG - chr1_2:54409009-54409028 None:intergenic 45.0%
! TGTCACTTGGCACTGGAAAA+AGG + chr1_2:54409008-54409027 Msa0077460:CDS 45.0%
GAAGTCTGCTTGATCAGAGT+TGG - chr1_2:54409044-54409063 None:intergenic 45.0%
CAGACTTCTTGAGTCAAGCA+AGG + chr1_2:54409056-54409075 Msa0077460:three_prime_UTR 45.0%
AGAGCATGAGCAATCAACGA+GGG - chr1_2:54409124-54409143 None:intergenic 45.0%
TGAATGGACCCAACATTGGA+TGG - chr1_2:54409156-54409175 None:intergenic 45.0%
TCCAATGTTGGGTCCATTCA+AGG + chr1_2:54409156-54409175 Msa0077460:three_prime_UTR 45.0%
TCCTTGAATGGACCCAACAT+TGG - chr1_2:54409160-54409179 None:intergenic 45.0%
TGGAATGGAATTGGCGAGTA+AGG + chr1_2:54409450-54409469 Msa0077460:three_prime_UTR 45.0%
TGGAATTGGCGAGTAAGGAT+TGG + chr1_2:54409455-54409474 Msa0077460:three_prime_UTR 45.0%
GGAATTGGCGAGTAAGGATT+GGG + chr1_2:54409456-54409475 Msa0077460:three_prime_UTR 45.0%
GAATTGGCGAGTAAGGATTG+GGG + chr1_2:54409457-54409476 Msa0077460:three_prime_UTR 45.0%
!! TATATATATATATATATATG+TGG + chr1_2:54403638-54403657 Msa0077460:intron 5.0%
CAGGTGGGATAGATGAGATG+TGG - chr1_2:54402622-54402641 None:intergenic 50.0%
CTCGGAAGGAAAATTGGTGG+TGG + chr1_2:54403259-54403278 Msa0077460:CDS 50.0%
TGCAATATGAAGGGGCCACT+AGG - chr1_2:54403675-54403694 None:intergenic 50.0%
CCAACTTAGCTATGCTCACG+GGG + chr1_2:54403712-54403731 Msa0077460:intron 50.0%
GCCAAGTACCAATCTCCCTT+AGG - chr1_2:54403917-54403936 None:intergenic 50.0%
! CTTGGCTGATTCCTTTGCGA+CGG + chr1_2:54403931-54403950 Msa0077460:intron 50.0%
ATCAGAAGTCACCGTCGCAA+AGG - chr1_2:54403945-54403964 None:intergenic 50.0%
TGAGGGTGACTACAATGCCA+TGG + chr1_2:54404716-54404735 Msa0077460:CDS 50.0%
TCCAAGGAGGTCAATTGCCA+TGG - chr1_2:54404736-54404755 None:intergenic 50.0%
! AGTCTTCCAGACTTGGTCCA+AGG - chr1_2:54404752-54404771 None:intergenic 50.0%
ATCACGGTGAAGGAAACCAC+GGG - chr1_2:54404947-54404966 None:intergenic 50.0%
ATGCCATGGCTTGAATGGAG+GGG - chr1_2:54405575-54405594 None:intergenic 50.0%
GATGCCATGGCTTGAATGGA+GGG - chr1_2:54405576-54405595 None:intergenic 50.0%
AGATGCCATGGCTTGAATGG+AGG - chr1_2:54405577-54405596 None:intergenic 50.0%
GATATGGAACCCCGTACTCA+AGG - chr1_2:54406757-54406776 None:intergenic 50.0%
GACAAGGTGAAGACAACCCA+AGG - chr1_2:54406946-54406965 None:intergenic 50.0%
TTCTTGCATATGCAGGCAGC+AGG - chr1_2:54407123-54407142 None:intergenic 50.0%
AAAACCTCACTGGAACTGCC+CGG + chr1_2:54407280-54407299 Msa0077460:CDS 50.0%
AACTGTTTCCCAGTCTCCCT+TGG + chr1_2:54407569-54407588 Msa0077460:intron 50.0%
AAACCTTGCCAAGGGAGACT+GGG - chr1_2:54407580-54407599 None:intergenic 50.0%
CCAGCTTTCAAACCTTGCCA+AGG - chr1_2:54407589-54407608 None:intergenic 50.0%
CCTTGGCAAGGTTTGAAAGC+TGG + chr1_2:54407586-54407605 Msa0077460:CDS 50.0%
CATAAAGGCTGCTTGCAAGC+GGG - chr1_2:54407679-54407698 None:intergenic 50.0%
!! TCTGCGTCAGGTTTTGTGCA+AGG + chr1_2:54407795-54407814 Msa0077460:intron 50.0%
TTTGTGCAAGGCACATCCGT+TGG + chr1_2:54407807-54407826 Msa0077460:CDS 50.0%
TCCATTACTGCCGATCGTTG+CGG + chr1_2:54407845-54407864 Msa0077460:CDS 50.0%
CGTGACCTATTCATCCGAGA+AGG + chr1_2:54407910-54407929 Msa0077460:CDS 50.0%
ACTCTCTCTCCTGATTGTCC+TGG - chr1_2:54408221-54408240 None:intergenic 50.0%
TTCAGGTGGACCAGAGATTC+GGG + chr1_2:54408514-54408533 Msa0077460:intron 50.0%
TAGATTCTCGGGTGCAGTTC+AGG + chr1_2:54408538-54408557 Msa0077460:CDS 50.0%
AGAAGGAATGGATCTGGCCA+TGG + chr1_2:54408569-54408588 Msa0077460:CDS 50.0%
GTGTGCATGGTGATCATTCC+AGG + chr1_2:54408591-54408610 Msa0077460:CDS 50.0%
TCAAGAGCAATCGGCTAGAG+CGG - chr1_2:54408862-54408881 None:intergenic 50.0%
ACTACTCAGAGGACTCAACC+AGG + chr1_2:54408899-54408918 Msa0077460:CDS 50.0%
GTGGTCGTGATGATACACTC+AGG + chr1_2:54408972-54408991 Msa0077460:CDS 50.0%
CTTGAGTCAAGCAAGGGTCA+TGG + chr1_2:54409063-54409082 Msa0077460:three_prime_UTR 50.0%
CAGAGCATGAGCAATCAACG+AGG - chr1_2:54409125-54409144 None:intergenic 50.0%
GTGGTCAAGTAGTGGCCTAG+TGG + chr1_2:54403657-54403676 Msa0077460:intron 55.0%
CCCCGTGAGCATAGCTAAGT+TGG - chr1_2:54403715-54403734 None:intergenic 55.0%
TGCTCACGGGGACGTCAATA+AGG + chr1_2:54403724-54403743 Msa0077460:intron 55.0%
GGATGCTGGTCCAACAGATG+TGG - chr1_2:54404241-54404260 None:intergenic 55.0%
GCCATGGCAATTGACCTCCT+TGG + chr1_2:54404732-54404751 Msa0077460:CDS 55.0%
TGACCTCCTTGGACCAAGTC+TGG + chr1_2:54404743-54404762 Msa0077460:CDS 55.0%
! CTTCCAGACTTGGTCCAAGG+AGG - chr1_2:54404749-54404768 None:intergenic 55.0%
GTTGAGTACATGCACTCCCG+TGG + chr1_2:54404928-54404947 Msa0077460:CDS 55.0%
TCTCCCCTCCATTCAAGCCA+TGG + chr1_2:54405569-54405588 Msa0077460:intron 55.0%
CATATGCAGGCAGCAGGTGA+AGG - chr1_2:54407117-54407136 None:intergenic 55.0%
TTTCCCAGTCTCCCTTGGCA+AGG + chr1_2:54407574-54407593 Msa0077460:intron 55.0%
CAAACCTTGCCAAGGGAGAC+TGG - chr1_2:54407581-54407600 None:intergenic 55.0%
ACCGCAACGATCGGCAGTAA+TGG - chr1_2:54407849-54407868 None:intergenic 55.0%
! TTGGATCTAGTTCCAGGGCC+CGG + chr1_2:54408057-54408076 Msa0077460:CDS 55.0%
GAGAGAGTAGAACGGCCTTC+AGG + chr1_2:54408233-54408252 Msa0077460:CDS 55.0%
GGACGGCTGCTTGATAAGAC+AGG - chr1_2:54408812-54408831 None:intergenic 55.0%
AGCAGCCGTCCAAACTCTTC+TGG + chr1_2:54408821-54408840 Msa0077460:CDS 55.0%
!! AATCGTGCTTCTGGGGCAAG+AGG + chr1_2:54408950-54408969 Msa0077460:CDS 55.0%
! GAACTCCTGTCACTTGGCAC+TGG + chr1_2:54409001-54409020 Msa0077460:CDS 55.0%
CATACCGGGCAGTTCCAGTG+AGG - chr1_2:54407287-54407306 None:intergenic 60.0%
! TGGATCTAGTTCCAGGGCCC+GGG + chr1_2:54408058-54408077 Msa0077460:CDS 60.0%
! TAAAGTACTCACCCGGGCCC+TGG - chr1_2:54408072-54408091 None:intergenic 60.0%
GGATCTGGCCATGGTGTGCA+TGG + chr1_2:54408578-54408597 Msa0077460:CDS 60.0%
CCGTGACGAGAAGAGCTACG+CGG - chr1_2:54408773-54408792 None:intergenic 60.0%
CCGCGTAGCTCTTCTCGTCA+CGG + chr1_2:54408770-54408789 Msa0077460:CDS 60.0%
CGGCTAGAGCGGCTTTCACT+TGG - chr1_2:54408851-54408870 None:intergenic 60.0%
!! CGTGCTTCTGGGGCAAGAGG+TGG + chr1_2:54408953-54408972 Msa0077460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54402602 54409612 54402602 ID=Msa0077460;Name=Msa0077460
chr1_2 mRNA 54402602 54409612 54402602 ID=Msa0077460-mRNA-1;Parent=Msa0077460;Name=Msa0077460-mRNA-1;_AED=0.15;_eAED=0.15;_QI=624|1|1|1|1|1|14|576|464
chr1_2 exon 54402602 54403304 54402602 ID=Msa0077460-mRNA-1:exon:16855;Parent=Msa0077460-mRNA-1
chr1_2 exon 54403409 54403449 54403409 ID=Msa0077460-mRNA-1:exon:16856;Parent=Msa0077460-mRNA-1
chr1_2 exon 54404459 54404528 54404459 ID=Msa0077460-mRNA-1:exon:16857;Parent=Msa0077460-mRNA-1
chr1_2 exon 54404685 54404833 54404685 ID=Msa0077460-mRNA-1:exon:16858;Parent=Msa0077460-mRNA-1
chr1_2 exon 54404919 54405014 54404919 ID=Msa0077460-mRNA-1:exon:16859;Parent=Msa0077460-mRNA-1
chr1_2 exon 54406644 54406714 54406644 ID=Msa0077460-mRNA-1:exon:16860;Parent=Msa0077460-mRNA-1
chr1_2 exon 54407272 54407333 54407272 ID=Msa0077460-mRNA-1:exon:16861;Parent=Msa0077460-mRNA-1
chr1_2 exon 54407440 54407503 54407440 ID=Msa0077460-mRNA-1:exon:16862;Parent=Msa0077460-mRNA-1
chr1_2 exon 54407582 54407666 54407582 ID=Msa0077460-mRNA-1:exon:16863;Parent=Msa0077460-mRNA-1
chr1_2 exon 54407805 54407931 54407805 ID=Msa0077460-mRNA-1:exon:16864;Parent=Msa0077460-mRNA-1
chr1_2 exon 54408006 54408079 54408006 ID=Msa0077460-mRNA-1:exon:16865;Parent=Msa0077460-mRNA-1
chr1_2 exon 54408194 54408254 54408194 ID=Msa0077460-mRNA-1:exon:16866;Parent=Msa0077460-mRNA-1
chr1_2 exon 54408519 54408649 54408519 ID=Msa0077460-mRNA-1:exon:16867;Parent=Msa0077460-mRNA-1
chr1_2 exon 54408752 54409612 54408752 ID=Msa0077460-mRNA-1:exon:16868;Parent=Msa0077460-mRNA-1
chr1_2 five_prime_UTR 54402602 54403225 54402602 ID=Msa0077460-mRNA-1:five_prime_utr;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54403226 54403304 54403226 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54403409 54403449 54403409 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54404459 54404528 54404459 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54404685 54404833 54404685 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54404919 54405014 54404919 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54406644 54406714 54406644 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54407272 54407333 54407272 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54407440 54407503 54407440 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54407582 54407666 54407582 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54407805 54407931 54407805 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54408006 54408079 54408006 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54408194 54408254 54408194 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54408519 54408649 54408519 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 CDS 54408752 54409036 54408752 ID=Msa0077460-mRNA-1:cds;Parent=Msa0077460-mRNA-1
chr1_2 three_prime_UTR 54409037 54409612 54409037 ID=Msa0077460-mRNA-1:three_prime_utr;Parent=Msa0077460-mRNA-1
Gene Sequence

>Msa0077460

ATGATGGATCATGTAATTGGTGGAAAATTCAAGCTCGGAAGGAAAATTGGTGGTGGGTCATTTGGAGAGCTCTACTTGGGTGTTAATGTACAAACTGGAGAGGAAGTTGCTCTTAAATTGGAACCTGTGAAGACCAAACATCCTCAACTTCACTACGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACGGGTATTCCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGCCATGGCAATTGACCTCCTTGGACCAAGTCTGGAAGACTTGTTTAACTATTGCAATAGGAAATTCTCTCTAAAAACAGTTCTGATGCTTGCAGATCAGCTACTAAACAGAGTTGAGTACATGCACTCCCGTGGTTTCCTTCACCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGACGCAAAGCAAATCAGGTATACATAATTGATTACGGCCTTGCAAAAAAGTTCCGAGATCTTCACACACACAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCCCGGTATGCAAGTGTTAATACTCATCTAGGAGTTGAACAAAGCAGAAGAGATGATCTGGAATCACTTGGTTTTGTACTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGTTTGAAAGCTGGCAATAAAAAACAAAAATACGACAGAATAAGTGAAAAGAAGATGCTTACTCCTATAGAGGTTTTGTGCAAGGCACATCCGTTGGAATTTACATCATACTTCCATTACTGCCGATCGTTGCGGTTTGAAGATAAGCCTGATTATTCGTATCTCAAGAGACTCTTTCGTGACCTATTCATCCGAGAAGGCTATCAGTTTGATTATGTGTTTGATTGGACTATATTGAAGTATCCACAAATTGGATCTAGTTCCAGGGCCCGGCCAAGTGGGAAACCAGTCATAAATCCAGGACAATCAGGAGAGAGAGTAGAACGGCCTTCAGGTGGACCAGAGATTCGGGATAGATTCTCGGGTGCAGTTCAGGCATTTGCAAGAAGGAATGGATCTGGCCATGGTGTGCATGGTGATCATTCCAGGCATAGATCTTCAGATGAGCCATCTTCTAAAGACGTGCAAGCTGATTCTGAGAGGCCGCGTAGCTCTTCTCGTCACGGCAGTTCTTCCAAAAGACCTGTCTTATCAAGCAGCCGTCCAAACTCTTCTGGTGAACCAAGTGAAAGCCGCTCTAGCCGATTGCTCTTGAGCAGTAGCAGACTATCTACTACTCAGAGGACTCAACCAGGTCTTGAGTCCAAATCATCATCATTTAATAATCGTGCTTCTGGGGCAAGAGGTGGTCGTGATGATACACTCAGGAGCTTTGAACTCCTGTCACTTGGCACTGGAAAAAGGAAATGA
Protein sequence

>Msa0077460

MMDHVIGGKFKLGRKIGGGSFGELYLGVNVQTGEEVALKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNAMAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKFRDLHTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGNKKQKYDRISEKKMLTPIEVLCKAHPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPVINPGQSGERVERPSGGPEIRDRFSGAVQAFARRNGSGHGVHGDHSRHRSSDEPSSKDVQADSERPRSSSRHGSSSKRPVLSSSRPNSSGEPSESRSSRLLLSSSRLSTTQRTQPGLESKSSSFNNRASGARGGRDDTLRSFELLSLGTGKRK*