AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341840 MtrunA17_Chr8g0380651 93.226 620 5 2 1 614 1 589 0.0 1167
Msa1341840 MtrunA17_Chr2g0277491 84.909 603 52 3 18 614 14 583 0.0 963
Msa1341840 MtrunA17_Chr5g0434001 39.794 583 327 8 48 614 33 607 2.12e-151 449
Msa1341840 MtrunA17_Chr8g0375501 39.931 576 323 7 54 614 24 591 1.58e-145 434
Msa1341840 MtrunA17_Chr6g0480551 39.016 569 325 7 60 614 28 588 8.87e-142 424
Msa1341840 MtrunA17_Chr8g0342031 33.442 616 337 9 60 614 45 648 3.90e-111 347
Msa1341840 MtrunA17_Chr1g0150181 33.279 616 338 10 60 614 34 637 6.04e-108 338
Msa1341840 MtrunA17_Chr3g0136881 32.573 614 341 9 62 614 35 636 8.74e-104 327
Msa1341840 MtrunA17_Chr4g0026371 33.739 575 347 11 59 614 30 589 6.33e-99 313
Msa1341840 MtrunA17_Chr4g0065301 29.827 637 351 17 60 614 34 656 2.44e-76 256
Msa1341840 MtrunA17_Chr5g0448371 30.709 635 347 19 60 614 44 665 5.83e-74 249
Msa1341840 MtrunA17_Chr3g0120461 29.764 635 353 20 60 614 38 659 2.49e-69 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341840 AT1G10950.1 82.753 603 65 3 18 614 20 589 0.0 957
Msa1341840 AT5G37310.1 40.034 582 320 10 51 614 23 593 1.03e-145 435
Msa1341840 AT5G37310.2 40.034 582 320 10 51 614 23 593 1.03e-145 435
Msa1341840 AT2G01970.1 39.583 576 325 8 54 614 25 592 2.16e-145 434
Msa1341840 AT1G14670.1 40.451 576 320 8 54 614 25 592 7.17e-142 425
Msa1341840 AT1G08350.3 35.839 572 339 10 60 614 29 589 4.19e-117 361
Msa1341840 AT1G08350.2 35.839 572 339 10 60 614 29 589 4.19e-117 361
Msa1341840 AT3G13772.1 33.764 619 331 12 60 614 38 641 9.39e-112 348
Msa1341840 AT1G55130.1 33.279 616 338 12 60 614 34 637 1.33e-108 340
Msa1341840 AT2G24170.1 33.279 616 338 10 60 614 34 637 8.32e-105 330
Msa1341840 AT5G25100.1 31.613 620 346 9 60 614 38 644 4.26e-101 321
Msa1341840 AT5G10840.1 31.118 617 351 8 60 614 44 648 1.58e-100 320
Msa1341840 AT5G25100.2 31.818 616 342 9 64 614 49 651 3.54e-100 319
Msa1341840 AT1G08350.4 34.924 524 304 10 60 566 29 532 4.45e-98 310
Msa1341840 AT1G08350.1 34.109 516 315 9 116 614 1 508 1.26e-97 308
Msa1341840 AT5G35160.1 35.153 458 274 11 165 614 188 630 6.74e-70 238
Msa1341840 AT5G35160.2 35.153 458 274 11 165 614 216 658 1.35e-69 238
Msa1341840 AT5G35160.3 35.153 458 274 11 165 614 216 658 1.35e-69 238
Msa1341840 AT5G35160.4 35.153 458 274 11 165 614 216 658 1.35e-69 238
Msa1341840 AT4G12650.1 30.229 612 335 17 83 614 53 652 1.46e-66 229
Msa1341840 AT2G24170.2 29.384 422 226 10 60 420 34 444 4.05e-48 175

Find 192 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTCTTGGTGAGGTTC+TGG 0.126257 tig0004894:+39077 Msa1341840:CDS
TTCCAAACCAGCTTCTATTT+TGG 0.163890 tig0004894:+43079 Msa1341840:CDS
TCTTTCCCTCTTGCACTTCT+TGG 0.167961 tig0004894:+42460 Msa1341840:CDS
AACACTATTGCTATATTCTA+TGG 0.173192 tig0004894:+42376 Msa1341840:CDS
TTTACACGACATGGATTATT+TGG 0.174871 tig0004894:-42514 None:intergenic
GCTCTCACATCGTTCATTTC+TGG 0.180300 tig0004894:+42130 Msa1341840:CDS
TGGGTAAATAAATATTAATT+AGG 0.186507 tig0004894:-37198 None:intergenic
GGTTCTTCTTGTCATCTTAC+TGG 0.189220 tig0004894:+41840 Msa1341840:CDS
GAATATAGCAATAGTGTTTA+AGG 0.196614 tig0004894:-42371 None:intergenic
GTCATCTTACTGGCTATTAT+TGG 0.221951 tig0004894:+41850 Msa1341840:CDS
GTTTCATCCCTTTATAAAAT+AGG 0.231371 tig0004894:+43581 Msa1341840:three_prime_UTR
CCATTATCGCTATGCTTATC+AGG 0.233882 tig0004894:-41031 None:intergenic
AGAAACATCAAGTGTGATTA+AGG 0.235735 tig0004894:+43322 Msa1341840:CDS
ATGATGGTCATCTTCCTTAC+TGG 0.240228 tig0004894:+41504 Msa1341840:CDS
ATTATTGGGATGTTGTATAT+TGG 0.240380 tig0004894:+41865 Msa1341840:CDS
TGTTTCTTGTGGATTGTTAT+AGG 0.255200 tig0004894:-38992 None:intergenic
CCATTCATGTGCTTTGGAAT+TGG 0.255297 tig0004894:+42343 Msa1341840:CDS
TTAGGAACTTGATCTCAATT+TGG 0.256416 tig0004894:-39122 None:intergenic
TTTCCTGCCTCCACAGGCTT+TGG 0.257862 tig0004894:-41225 None:intergenic
TTCCTGCCTCCACAGGCTTT+GGG 0.275232 tig0004894:-41224 None:intergenic
GATCCTTCTCACAAACAAAT+TGG 0.295137 tig0004894:-43296 None:intergenic
GTTCCTACTAATATCACTTT+TGG 0.301532 tig0004894:+41279 Msa1341840:CDS
TTATTCCCATTCATGTGCTT+TGG 0.303113 tig0004894:+42337 Msa1341840:CDS
TGCTGGAGACAATAAATTCT+TGG 0.310005 tig0004894:+43382 Msa1341840:three_prime_UTR
TTATTGGGATGTTGTATATT+GGG 0.315812 tig0004894:+41866 Msa1341840:CDS
GTACTAGATGGGTGGCAAAA+TGG 0.317512 tig0004894:-39033 None:intergenic
CATCATGAAAGAGTTGAAAA+TGG 0.317773 tig0004894:-41487 None:intergenic
CCTGATAAGCATAGCGATAA+TGG 0.322031 tig0004894:+41031 Msa1341840:CDS
TCATCTTACTGGCTATTATT+GGG 0.322850 tig0004894:+41851 Msa1341840:CDS
GGGTAAATAAATATTAATTA+GGG 0.324557 tig0004894:-37197 None:intergenic
GGTGGTCTTGGTGAGGTTCT+GGG 0.343914 tig0004894:+39078 Msa1341840:CDS
TTGTTCACCCAAAGGTTAAC+AGG 0.344271 tig0004894:-38961 None:intergenic
GTACAGTTGTTGGAAGAAAC+TGG 0.348979 tig0004894:+42482 Msa1341840:CDS
GTTTCTTGTGGATTGTTATA+GGG 0.350260 tig0004894:-38991 None:intergenic
GAAATGATGAATGGTGGTTT+TGG 0.352844 tig0004894:-37226 None:intergenic
CAGGTAGAATCACAGGGTTT+TGG 0.358097 tig0004894:+43446 Msa1341840:three_prime_UTR
TTCTACCTGTAAACATTGTT+AGG 0.362610 tig0004894:-43432 None:intergenic
ATTTGACATATTCTGTCAAA+TGG 0.363074 tig0004894:+41256 Msa1341840:CDS
CTTCTACTGCTGCACACAAA+TGG 0.372102 tig0004894:+39055 Msa1341840:CDS
GGAAGAAGATGGATCGGGAT+TGG 0.374431 tig0004894:-37420 None:intergenic
TTCTACTGCTGCACACAAAT+GGG 0.377902 tig0004894:+39056 Msa1341840:CDS
TGCTCGGGAAGATGATGATT+TGG 0.381303 tig0004894:+41578 Msa1341840:CDS
TTTACATTACATTGGATAGT+TGG 0.384243 tig0004894:-43652 None:intergenic
TACTAGATGGGTGGCAAAAT+GGG 0.386783 tig0004894:-39032 None:intergenic
ATGCAATAGAGAATAATTAC+TGG 0.388926 tig0004894:+39294 Msa1341840:CDS
GGGATGATCCTGTTAACCTT+TGG 0.390319 tig0004894:+38953 Msa1341840:CDS
GCACTTCTTGGTACAGTTGT+TGG 0.394046 tig0004894:+42472 Msa1341840:CDS
GGATGATCCTGTTAACCTTT+GGG 0.395177 tig0004894:+38954 Msa1341840:CDS
TCTCTAGCTGCTATCCCATT+TGG 0.398262 tig0004894:+42400 Msa1341840:CDS
TGGTGATGGATGGGTTGAAT+TGG 0.402266 tig0004894:-37387 None:intergenic
CACTTCCATAGGCTTGTTGC+TGG 0.402858 tig0004894:+43365 Msa1341840:three_prime_UTR
ATCCAAAATAGAAGCTGGTT+TGG 0.403813 tig0004894:-43081 None:intergenic
ACAACCACCATTGTGCCAAA+TGG 0.406323 tig0004894:-42415 None:intergenic
ACCTTCAGTGGTTTCTCTGA+TGG 0.407419 tig0004894:+42579 Msa1341840:CDS
TTTCTGTTTCATAGATTCAC+TGG 0.407915 tig0004894:+41460 Msa1341840:intron
TCATTTCTGGTTATGTGAGT+GGG 0.411230 tig0004894:+42143 Msa1341840:CDS
TGTGTATGGCTTTATGCTAC+TGG 0.413075 tig0004894:+42877 Msa1341840:CDS
TTGGAAGGACATGGTGGTGA+TGG 0.417335 tig0004894:-37401 None:intergenic
TGTGGAGGCAGGAAAACATT+TGG 0.417528 tig0004894:+41233 Msa1341840:CDS
CTGTTTGTGTAACAATTGTC+GGG 0.419368 tig0004894:+42924 Msa1341840:CDS
AGGTGCTCAGCTAGCACTGC+TGG 0.423568 tig0004894:+41819 Msa1341840:CDS
GGTCATCTTCCTTACTGGAT+TGG 0.423761 tig0004894:+41509 Msa1341840:CDS
TTCAGGAAATGTGGATAAAA+CGG 0.424085 tig0004894:+39223 Msa1341840:intron
ATGGGAGGACTGCTCCCCTT+TGG 0.425866 tig0004894:+42598 Msa1341840:CDS
GGGAACCTAACAATGTTTAC+AGG 0.428040 tig0004894:+43427 Msa1341840:three_prime_UTR
CAACCACCATTGTGCCAAAT+GGG 0.431622 tig0004894:-42414 None:intergenic
TTGGAACTTGAAACCATGTT+GGG 0.433221 tig0004894:-43633 None:intergenic
AGAAGAGGAAGAAGATGGAT+CGG 0.438159 tig0004894:-37426 None:intergenic
CATTGAATTGAAATGATGAA+TGG 0.443163 tig0004894:-37235 None:intergenic
ACTGTTTGTGTAACAATTGT+CGG 0.444100 tig0004894:+42923 Msa1341840:CDS
TTTAATGTTTAAGGATATGT+TGG 0.444357 tig0004894:+40998 Msa1341840:intron
CCAATTCCAAAGCACATGAA+TGG 0.445296 tig0004894:-42343 None:intergenic
GTTATTCTTTCAGCTGTAGT+TGG 0.446425 tig0004894:+41793 Msa1341840:CDS
AAGGACATGGTGGTGATGGA+TGG 0.449505 tig0004894:-37397 None:intergenic
CTTTCAGCTGTAGTTGGCAC+AGG 0.449731 tig0004894:+41799 Msa1341840:CDS
CTATCCTTTCTTTGAGCACC+AGG 0.454485 tig0004894:+41326 Msa1341840:CDS
GCAGCAGTAGAAGTACTAGA+TGG 0.454588 tig0004894:-39045 None:intergenic
GGGGATGTACTCACGAAATG+GGG 0.455052 tig0004894:+42165 Msa1341840:CDS
ATTAGACATAAGTCCTTCAA+TGG 0.458310 tig0004894:-43608 None:intergenic
CCTTCAGTGGTTTCTCTGAT+GGG 0.459448 tig0004894:+42580 Msa1341840:CDS
TACCACTTCTTCTCAGGAAT+GGG 0.459819 tig0004894:-42550 None:intergenic
GCACACAAATGGGGTGGTCT+TGG 0.464078 tig0004894:+39066 Msa1341840:CDS
TGTTAAATACAATAATGATC+AGG 0.464103 tig0004894:+41087 Msa1341840:CDS
TTTGCATGTTAGGTAAAAGC+TGG 0.464576 tig0004894:+42287 Msa1341840:intron
AGATGATGATTTGGAATCTC+TGG 0.464901 tig0004894:+41587 Msa1341840:CDS
AACCTTTGGGTGAACAAAGT+TGG 0.465024 tig0004894:+38967 Msa1341840:CDS
GTCCCAAAGCCTGTGGAGGC+AGG 0.466032 tig0004894:+41222 Msa1341840:CDS
GAAGAGGAAGAAGATGGATC+GGG 0.467833 tig0004894:-37425 None:intergenic
TTCAATAAATATGCTGCCAA+AGG 0.469394 tig0004894:-42614 None:intergenic
AAATGAAGAGAGAGAAGAAG+AGG 0.470429 tig0004894:-37441 None:intergenic
TTCCCCTCTTTACATTACAT+TGG 0.470748 tig0004894:-43660 None:intergenic
TTTGACATATTCTGTCAAAT+GGG 0.471266 tig0004894:+41257 Msa1341840:CDS
AGGACATGGTGGTGATGGAT+GGG 0.474995 tig0004894:-37396 None:intergenic
AGAGACGTTAGTGAAGAATC+TGG 0.475065 tig0004894:+41724 Msa1341840:CDS
GTGAGGTACCACTTCTTCTC+AGG 0.480937 tig0004894:-42556 None:intergenic
TACGTGAAGACAAAGATGTC+AGG 0.484733 tig0004894:+43052 Msa1341840:CDS
CGTCCAAAAGTGATATTAGT+AGG 0.488108 tig0004894:-41282 None:intergenic
CAATTCCAAAGCACATGAAT+GGG 0.488664 tig0004894:-42342 None:intergenic
TCAATAAATATGCTGCCAAA+GGG 0.491052 tig0004894:-42613 None:intergenic
AGAGAAGAAGAGGAAGAAGA+TGG 0.491368 tig0004894:-37431 None:intergenic
TAAAGAAGCTGTAAGGATCA+TGG 0.491490 tig0004894:-42317 None:intergenic
TGTCTCCAGCAACAAGCCTA+TGG 0.499255 tig0004894:-43370 None:intergenic
AAATTCTTGGAGGAAGCCTC+TGG 0.502558 tig0004894:+43395 Msa1341840:three_prime_UTR
GTTCCAATTTGTTTGTGAGA+AGG 0.502663 tig0004894:+43293 Msa1341840:CDS
CTTGGACTAGGAATTCTTTG+CGG 0.503085 tig0004894:+43121 Msa1341840:CDS
TTCATTTCTGGTTATGTGAG+TGG 0.508011 tig0004894:+42142 Msa1341840:CDS
TACTCTTATTTCAGGAAATG+TGG 0.511703 tig0004894:+39214 Msa1341840:intron
ATGTTTACAGGTAGAATCAC+AGG 0.511994 tig0004894:+43439 Msa1341840:three_prime_UTR
ACACTATTGCTATATTCTAT+GGG 0.513070 tig0004894:+42377 Msa1341840:CDS
TTAGACATAAGTCCTTCAAT+GGG 0.514965 tig0004894:-43607 None:intergenic
TATCCAATGTAATGTAAAGA+GGG 0.515433 tig0004894:+43657 Msa1341840:three_prime_UTR
TAATAATTGTATGTTTCTTG+TGG 0.516387 tig0004894:-39003 None:intergenic
TAAAATAGGAGCCCCATTGA+AGG 0.517565 tig0004894:+43595 Msa1341840:three_prime_UTR
ATGACTATGCAAAATATGCT+CGG 0.518614 tig0004894:+41562 Msa1341840:CDS
TAATATTCTTGTGTGTGTAA+AGG 0.519006 tig0004894:-41063 None:intergenic
GAAGAGTGGAAAAGAAGGTA+AGG 0.521099 tig0004894:-37262 None:intergenic
TACTTCCTTCTGGAATTACA+AGG 0.524010 tig0004894:+42651 Msa1341840:CDS
ATTTCTGGTTATGTGAGTGG+GGG 0.527049 tig0004894:+42145 Msa1341840:CDS
TAAAGACAGTCAATTACAGC+CGG 0.528111 tig0004894:-43520 None:intergenic
TGTACCTGGTGCTCAAAGAA+AGG 0.529220 tig0004894:-41330 None:intergenic
CGTTGTTGAAGATTGAAGAG+TGG 0.530294 tig0004894:-37276 None:intergenic
AGGAAGCCTCTGGTCATGTG+TGG 0.531037 tig0004894:+43405 Msa1341840:three_prime_UTR
TTGCATCATCAAGATCCATC+TGG 0.532224 tig0004894:-39253 None:intergenic
ACGCCGCTTTGATGTCTACC+TGG 0.532449 tig0004894:+41302 Msa1341840:CDS
GGGATGTACTCACGAAATGG+GGG 0.532731 tig0004894:+42166 Msa1341840:CDS
GAAGATGGATCGGGATTGGA+AGG 0.534872 tig0004894:-37416 None:intergenic
TGACTATGCAAAATATGCTC+GGG 0.538507 tig0004894:+41563 Msa1341840:CDS
TGCTATCCCATTTGGCACAA+TGG 0.538975 tig0004894:+42408 Msa1341840:CDS
CTGAGAACTACCACTGGCAA+TGG 0.539560 tig0004894:+42966 Msa1341840:CDS
CTATCCAATGTAATGTAAAG+AGG 0.539597 tig0004894:+43656 Msa1341840:three_prime_UTR
GTACCACTTCTTCTCAGGAA+TGG 0.539757 tig0004894:-42551 None:intergenic
TGGAGACAATAAATTCTTGG+AGG 0.539868 tig0004894:+43385 Msa1341840:three_prime_UTR
GTTGGAACTTGAAACCATGT+TGG 0.540361 tig0004894:-43634 None:intergenic
ATGGGAATAAAGAAGCTGTA+AGG 0.542673 tig0004894:-42324 None:intergenic
AGATTGAAGAGTGGAAAAGA+AGG 0.543101 tig0004894:-37267 None:intergenic
CGCTTCAGAATCAGATCACA+AGG 0.545253 tig0004894:+37474 Msa1341840:CDS
AGTGTATCCAAAATAGAAGC+TGG 0.550003 tig0004894:-43086 None:intergenic
TTCTTCTCAGGAATGGGACG+AGG 0.550039 tig0004894:-42544 None:intergenic
TTCCAATGTGCAGGAGCTGT+AGG 0.552065 tig0004894:+43262 Msa1341840:intron
GGAAGCCTCTGGTCATGTGT+GGG 0.556186 tig0004894:+43406 Msa1341840:three_prime_UTR
AAAGACAGTCAATTACAGCC+GGG 0.559382 tig0004894:-43519 None:intergenic
CATTTCTGGTTATGTGAGTG+GGG 0.564790 tig0004894:+42144 Msa1341840:CDS
ACGTTAGTGAAGAATCTGGC+TGG 0.566054 tig0004894:+41728 Msa1341840:CDS
AAACAGGTGTACTATGTGTA+TGG 0.567409 tig0004894:+42863 Msa1341840:intron
GTCCAACTTTGTTCACCCAA+AGG 0.569033 tig0004894:-38969 None:intergenic
TTTCTGGTTATGTGAGTGGG+GGG 0.572386 tig0004894:+42146 Msa1341840:CDS
TCAAACCGGAGCACTTCCAT+AGG 0.574233 tig0004894:+43354 Msa1341840:three_prime_UTR
GTCCCATTCCTGAGAAGAAG+TGG 0.575509 tig0004894:+42548 Msa1341840:CDS
TCAGTGGTTTCTCTGATGGG+AGG 0.576830 tig0004894:+42583 Msa1341840:CDS
GTGGTACCTCACACCTTCAG+TGG 0.581121 tig0004894:+42567 Msa1341840:CDS
GTGATCTGATTCTGAAGCGA+AGG 0.581572 tig0004894:-37470 None:intergenic
CAGCAGTAGAAGTACTAGAT+GGG 0.584920 tig0004894:-39044 None:intergenic
ACAAGCCTATGGAAGTGCTC+CGG 0.585518 tig0004894:-43359 None:intergenic
GAGAGCATAACAAACAATGA+AGG 0.589483 tig0004894:-42113 None:intergenic
TGAATTGAAATGATGAATGG+TGG 0.590079 tig0004894:-37232 None:intergenic
ATACACATAAACTGATGTTG+AGG 0.596910 tig0004894:-43008 None:intergenic
TCATTGATACCAATCCAGTA+AGG 0.604552 tig0004894:-41518 None:intergenic
GCTCAAAGAAAGGATAGTCC+AGG 0.607444 tig0004894:-41320 None:intergenic
GTTCACCTTGTAATTCCAGA+AGG 0.615446 tig0004894:-42656 None:intergenic
GATGGATCTTGATGATGCAA+AGG 0.617807 tig0004894:+39256 Msa1341840:CDS
ACGTGAAGACAAAGATGTCA+GGG 0.618435 tig0004894:+43053 Msa1341840:CDS
TTATGTCTAATTCCCCAACA+TGG 0.624747 tig0004894:+43620 Msa1341840:three_prime_UTR
TATCCCATTTGGCACAATGG+TGG 0.629550 tig0004894:+42411 Msa1341840:CDS
TCTACTGCTGCACACAAATG+GGG 0.631157 tig0004894:+39057 Msa1341840:CDS
CAAATGGGGTGGTCTTGGTG+AGG 0.631751 tig0004894:+39071 Msa1341840:CDS
GAAGCCTCTGGTCATGTGTG+GGG 0.632670 tig0004894:+43407 Msa1341840:three_prime_UTR
TCAAGATGTCCCAAAGCCTG+TGG 0.633218 tig0004894:+41215 Msa1341840:CDS
AGATGTCCCAAAGCCTGTGG+AGG 0.635079 tig0004894:+41218 Msa1341840:CDS
GGTCTTGGTGAGGTTCTGGG+TGG 0.636779 tig0004894:+39081 Msa1341840:CDS
ACTGTACCAAGAAGTGCAAG+AGG 0.641941 tig0004894:-42466 None:intergenic
ATCCAATGTAATGTAAAGAG+GGG 0.644683 tig0004894:+43658 Msa1341840:three_prime_UTR
TAAATGCTGAGAACTACCAC+TGG 0.646179 tig0004894:+42960 Msa1341840:CDS
CCCATCAGAGAAACCACTGA+AGG 0.648823 tig0004894:-42580 None:intergenic
AAGACAGTCAATTACAGCCG+GGG 0.650653 tig0004894:-43518 None:intergenic
CAGTAGAAGTACTAGATGGG+TGG 0.656556 tig0004894:-39041 None:intergenic
CAATAAATATGCTGCCAAAG+GGG 0.656961 tig0004894:-42612 None:intergenic
GAAAGAATAACTAAATAGCG+AGG 0.658895 tig0004894:-41781 None:intergenic
TGGAACTTGAAACCATGTTG+GGG 0.661336 tig0004894:-43632 None:intergenic
TGTTTACAGGTAGAATCACA+GGG 0.661513 tig0004894:+43440 Msa1341840:three_prime_UTR
GGATCGGGATTGGAAGGACA+TGG 0.668832 tig0004894:-37410 None:intergenic
TGTTACACAAACAGTAACGA+TGG 0.672279 tig0004894:-42915 None:intergenic
GGTTCCCCACACATGACCAG+AGG 0.672489 tig0004894:-43411 None:intergenic
ACTGCTGCACACAAATGGGG+TGG 0.678345 tig0004894:+39060 Msa1341840:CDS
AGAAAGACGTCCATTGCCAG+TGG 0.681900 tig0004894:-42976 None:intergenic
CTGTACCAAGAAGTGCAAGA+GGG 0.682888 tig0004894:-42465 None:intergenic
TCTGGCTGGAAACTTGTGCA+CGG 0.685297 tig0004894:+41742 Msa1341840:CDS
GAGAAACCACTGAAGGTGTG+AGG 0.685299 tig0004894:-42573 None:intergenic
TCGGGATTGGAAGGACATGG+TGG 0.702018 tig0004894:-37407 None:intergenic
AGAATAACTAAATAGCGAGG+AGG 0.710040 tig0004894:-41778 None:intergenic
TAGACATAAGTCCTTCAATG+GGG 0.748274 tig0004894:-43606 None:intergenic
GTTGTTGGAAGAAACTGGAG+TGG 0.756109 tig0004894:+42487 Msa1341840:CDS
AGTCCAGGTAGACATCAAAG+CGG 0.788919 tig0004894:-41305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTATTTTTAAAAAAAA+TGG - tig0004894:41358-41377 None:intergenic 0.0%
!! GGGTAAATAAATATTAATTA+GGG - tig0004894:37200-37219 None:intergenic 15.0%
!! TGGGTAAATAAATATTAATT+AGG - tig0004894:37201-37220 None:intergenic 15.0%
!! TATTATTGAAAAATTTCGAA+CGG + tig0004894:38188-38207 Msa1341840:intron 15.0%
!! TGTCAAAATAAAAAACTTAA+GGG - tig0004894:38283-38302 None:intergenic 15.0%
!! TTGTCAAAATAAAAAACTTA+AGG - tig0004894:38284-38303 None:intergenic 15.0%
!!! AAAACCAAGTTTTTAAATAT+TGG + tig0004894:38303-38322 Msa1341840:intron 15.0%
!! TAATCCAATATTTAAAAACT+TGG - tig0004894:38310-38329 None:intergenic 15.0%
!! TTAAAAGTTACAACTAATTA+AGG - tig0004894:38788-38807 None:intergenic 15.0%
!!! ATACATCCTTTTAAAAAAAA+TGG - tig0004894:38911-38930 None:intergenic 15.0%
!! TGTAAAATAATTCATTCAAT+TGG - tig0004894:39623-39642 None:intergenic 15.0%
!!! ATTTTATCTGTTCTTATTTA+TGG + tig0004894:41624-41643 Msa1341840:intron 15.0%
!!! TTAGAAAAACATAATTTTCT+AGG - tig0004894:41667-41686 None:intergenic 15.0%
!!! AATTGGTTTTATGAATGTTA+TGG + tig0004894:37623-37642 Msa1341840:CDS 20.0%
!!! TTGTTATTATTTAGTGATCT+TGG + tig0004894:37802-37821 Msa1341840:intron 20.0%
!!! AATCCTGTTTATTTACTTTT+TGG + tig0004894:38112-38131 Msa1341840:intron 20.0%
!! ATTATTGAAAAATTTCGAAC+GGG + tig0004894:38189-38208 Msa1341840:intron 20.0%
!!! TATCATATTTAAAACTTCCA+TGG - tig0004894:38513-38532 None:intergenic 20.0%
!! TATAACTTTACTTACTCTAT+AGG + tig0004894:38739-38758 Msa1341840:intron 20.0%
!!! TTATTTTATTGCAGTATCAA+CGG + tig0004894:38932-38951 Msa1341840:intron 20.0%
!! TAATAATTGTATGTTTCTTG+TGG - tig0004894:39006-39025 None:intergenic 20.0%
!! TAAATAATATTTCCTTTCAG+AGG + tig0004894:39567-39586 Msa1341840:intron 20.0%
!! TCAAAACAAATAAATTATCG+AGG + tig0004894:39898-39917 Msa1341840:intron 20.0%
!! TGAAAACTAATAAGTTATCT+AGG - tig0004894:40132-40151 None:intergenic 20.0%
!! TTGATTATAATAGGACATTA+TGG + tig0004894:40220-40239 Msa1341840:intron 20.0%
!!! TTTTTAAATCCAATAGTGTT+TGG + tig0004894:40680-40699 Msa1341840:intron 20.0%
!!! TAAATTTAAAACAAGGAATG+AGG - tig0004894:40771-40790 None:intergenic 20.0%
!! TTTAATGTTTAAGGATATGT+TGG + tig0004894:40998-41017 Msa1341840:intron 20.0%
!! TGTTAAATACAATAATGATC+AGG + tig0004894:41087-41106 Msa1341840:CDS 20.0%
!!! TGAAGTTTTTTTTTTTTGTG+TGG + tig0004894:42201-42220 Msa1341840:intron 20.0%
!!! ACTATTTTTATTTGCATGTT+AGG + tig0004894:42277-42296 Msa1341840:intron 20.0%
!!! ATCAAATTCCTTTTATTTGT+TGG + tig0004894:42704-42723 Msa1341840:intron 20.0%
!!! TAAGTCATTTTTCTTGATAA+AGG - tig0004894:42753-42772 None:intergenic 20.0%
!! AAGAAAAATGACTTAGATAA+TGG + tig0004894:42758-42777 Msa1341840:intron 20.0%
!!! GTGTATTCTTTTTCTATATT+GGG + tig0004894:43477-43496 Msa1341840:three_prime_UTR 20.0%
!!! TGTATTCTTTTTCTATATTG+GGG + tig0004894:43478-43497 Msa1341840:three_prime_UTR 20.0%
! CATTGAATTGAAATGATGAA+TGG - tig0004894:37238-37257 None:intergenic 25.0%
!!! GGTTTTTGTTTGTATAATGT+AGG + tig0004894:37689-37708 Msa1341840:intron 25.0%
! GAACCAAAAAGTAAATAAAC+AGG - tig0004894:38118-38137 None:intergenic 25.0%
! TCAGTTAATATTGAGTTAGA+CGG - tig0004894:38415-38434 None:intergenic 25.0%
! ATCTTAATTGCATTCTACTT+TGG + tig0004894:38445-38464 Msa1341840:intron 25.0%
! CTAATTAGACCAACTTTATT+CGG + tig0004894:38483-38502 Msa1341840:intron 25.0%
!! TCAACTGTTTAATTTATTGC+TGG - tig0004894:38582-38601 None:intergenic 25.0%
! TTGTAAGCTAATAGATATAG+GGG - tig0004894:38816-38835 None:intergenic 25.0%
! GTTGTAAGCTAATAGATATA+GGG - tig0004894:38817-38836 None:intergenic 25.0%
!!! TGGCTTCCATTTTTTTTAAA+AGG + tig0004894:38902-38921 Msa1341840:intron 25.0%
!! TATTTTATTGCAGTATCAAC+GGG + tig0004894:38933-38952 Msa1341840:intron 25.0%
!! TTAACGAATACTCTTATTTC+AGG + tig0004894:39206-39225 Msa1341840:intron 25.0%
! ATGCAATAGAGAATAATTAC+TGG + tig0004894:39294-39313 Msa1341840:CDS 25.0%
!!! TTACTGGTTTGAATTTTTCA+TGG + tig0004894:39310-39329 Msa1341840:CDS 25.0%
!!! TACTGGTTTGAATTTTTCAT+GGG + tig0004894:39311-39330 Msa1341840:CDS 25.0%
! ATTATTTACACCAACTTCTA+TGG - tig0004894:39555-39574 None:intergenic 25.0%
! TCAGTTTCAAGACTTATTTA+TGG + tig0004894:39765-39784 Msa1341840:intron 25.0%
! CAGTTTCAAGACTTATTTAT+GGG + tig0004894:39766-39785 Msa1341840:intron 25.0%
! CTATTATAATCAAATGCAGT+CGG - tig0004894:40213-40232 None:intergenic 25.0%
!! ATGTCTGTACAATAATGTTT+TGG + tig0004894:40341-40360 Msa1341840:intron 25.0%
! TACATGATGACATTTATGTA+TGG + tig0004894:40501-40520 Msa1341840:intron 25.0%
!!! TTTTGTTGTTGTTATTTCTC+TGG + tig0004894:40844-40863 Msa1341840:intron 25.0%
! TAATATTCTTGTGTGTGTAA+AGG - tig0004894:41066-41085 None:intergenic 25.0%
! ATTTGACATATTCTGTCAAA+TGG + tig0004894:41256-41275 Msa1341840:CDS 25.0%
! TTTGACATATTCTGTCAAAT+GGG + tig0004894:41257-41276 Msa1341840:CDS 25.0%
!!! TAAAAAAAATGGATTGTACC+TGG - tig0004894:41347-41366 None:intergenic 25.0%
! ATTATTGGGATGTTGTATAT+TGG + tig0004894:41865-41884 Msa1341840:CDS 25.0%
! TTATTGGGATGTTGTATATT+GGG + tig0004894:41866-41885 Msa1341840:CDS 25.0%
!!! ACTGTTCTAGTTTTTTGTAA+TGG + tig0004894:41992-42011 Msa1341840:intron 25.0%
!!! TTTTGTAATGGACTTCATAA+TGG + tig0004894:42004-42023 Msa1341840:intron 25.0%
! ACAATTAAGAGAATGTTAGT+TGG - tig0004894:42066-42085 None:intergenic 25.0%
! GAATATAGCAATAGTGTTTA+AGG - tig0004894:42374-42393 None:intergenic 25.0%
! AACACTATTGCTATATTCTA+TGG + tig0004894:42376-42395 Msa1341840:CDS 25.0%
! ACACTATTGCTATATTCTAT+GGG + tig0004894:42377-42396 Msa1341840:CDS 25.0%
!! ATTTTGTATTTACTTCCTTC+TGG + tig0004894:42641-42660 Msa1341840:CDS 25.0%
!! TTGATAATTAAAACAAGTCG+TGG - tig0004894:42689-42708 None:intergenic 25.0%
! TGACAAAACCAACAAATAAA+AGG - tig0004894:42715-42734 None:intergenic 25.0%
!! CATAGAGTATTTGCTTTAAA+GGG - tig0004894:42784-42803 None:intergenic 25.0%
!! ACATAGAGTATTTGCTTTAA+AGG - tig0004894:42785-42804 None:intergenic 25.0%
! ATAGGATATCTTATCATATG+CGG + tig0004894:43186-43205 Msa1341840:intron 25.0%
!! GGTGTATTCTTTTTCTATAT+TGG + tig0004894:43476-43495 Msa1341840:three_prime_UTR 25.0%
!! GTATTCTTTTTCTATATTGG+GGG + tig0004894:43479-43498 Msa1341840:three_prime_UTR 25.0%
!!! TTTTAGAGTTAGCACAATAT+CGG + tig0004894:43546-43565 Msa1341840:three_prime_UTR 25.0%
! GTTTCATCCCTTTATAAAAT+AGG + tig0004894:43581-43600 Msa1341840:three_prime_UTR 25.0%
! TTTACATTACATTGGATAGT+TGG - tig0004894:43655-43674 None:intergenic 25.0%
! TATCCAATGTAATGTAAAGA+GGG + tig0004894:43657-43676 Msa1341840:three_prime_UTR 25.0%
TGAATTGAAATGATGAATGG+TGG - tig0004894:37235-37254 None:intergenic 30.0%
AGTAGATCAAATCATGAGAT+CGG - tig0004894:37527-37546 None:intergenic 30.0%
!!! AAAGTTGCGTTTTTTAGTGT+TGG + tig0004894:37650-37669 Msa1341840:CDS 30.0%
!! TTTTTAGTGTTGGATCTTAC+TGG + tig0004894:37660-37679 Msa1341840:CDS 30.0%
!! TTTTAGTGTTGGATCTTACT+GGG + tig0004894:37661-37680 Msa1341840:CDS 30.0%
TAACATTATGTTGAAGTGTG+AGG + tig0004894:37896-37915 Msa1341840:intron 30.0%
TATACCAAAACCTGTTAATC+AGG - tig0004894:37935-37954 None:intergenic 30.0%
TGATAAATATCACAGACTCA+CGG - tig0004894:38063-38082 None:intergenic 30.0%
AGTCTGTGATATTTATCAGT+TGG + tig0004894:38065-38084 Msa1341840:intron 30.0%
! TGTCATGCTTTTCTAATCTA+TGG + tig0004894:38534-38553 Msa1341840:intron 30.0%
GGTTGTAAGCTAATAGATAT+AGG - tig0004894:38818-38837 None:intergenic 30.0%
! TTGTAGTTTCAAGAAGTGTA+TGG + tig0004894:38882-38901 Msa1341840:intron 30.0%
! GTTTCTTGTGGATTGTTATA+GGG - tig0004894:38994-39013 None:intergenic 30.0%
! TGTTTCTTGTGGATTGTTAT+AGG - tig0004894:38995-39014 None:intergenic 30.0%
TTAGGAACTTGATCTCAATT+TGG - tig0004894:39125-39144 None:intergenic 30.0%
! CAAGAGAAGTTTTCATACTT+AGG - tig0004894:39143-39162 None:intergenic 30.0%
!! ATAAGAGTATTCGTTAAAGC+TGG - tig0004894:39203-39222 None:intergenic 30.0%
! TACTCTTATTTCAGGAAATG+TGG + tig0004894:39214-39233 Msa1341840:intron 30.0%
TTCAGGAAATGTGGATAAAA+CGG + tig0004894:39223-39242 Msa1341840:intron 30.0%
TATTCTTGATGTTAGTGTAC+TGG - tig0004894:39435-39454 None:intergenic 30.0%
CAACGTAAAAATAACAGAAG+CGG + tig0004894:39462-39481 Msa1341840:intron 30.0%
!! ATGTGTGTTTCTTAGTTTGT+AGG - tig0004894:39498-39517 None:intergenic 30.0%
ACAAACTAAGAAACACACAT+CGG + tig0004894:39498-39517 Msa1341840:intron 30.0%
AGAGTATAAACCATAGAAGT+TGG + tig0004894:39542-39561 Msa1341840:intron 30.0%
!! ACTGCTTTTGACTCATAATA+GGG - tig0004894:39817-39836 None:intergenic 30.0%
!! AACTGCTTTTGACTCATAAT+AGG - tig0004894:39818-39837 None:intergenic 30.0%
TGAGTCAAAAGCAGTTAAAA+TGG + tig0004894:39822-39841 Msa1341840:intron 30.0%
TATGCCAATGATTCATCAAT+AGG - tig0004894:40042-40061 None:intergenic 30.0%
CGACTGCATTTGATTATAAT+AGG + tig0004894:40211-40230 Msa1341840:intron 30.0%
TGTTATCAACAGTAAGCTAT+CGG - tig0004894:40431-40450 None:intergenic 30.0%
!! TTAACTATTCTAGAATGCCT+TGG + tig0004894:40575-40594 Msa1341840:intron 30.0%
ATTCTTGATTCCATACTTCT+CGG - tig0004894:40635-40654 None:intergenic 30.0%
CATCAATTACCAAACACTAT+TGG - tig0004894:40692-40711 None:intergenic 30.0%
TTGTCATAATGTTATGAGTG+AGG + tig0004894:40726-40745 Msa1341840:intron 30.0%
TGTCATAATGTTATGAGTGA+GGG + tig0004894:40727-40746 Msa1341840:intron 30.0%
AGTTATTCAGCAAAAATGGA+AGG - tig0004894:40814-40833 None:intergenic 30.0%
AGTGAGTTATTCAGCAAAAA+TGG - tig0004894:40818-40837 None:intergenic 30.0%
! GTTCCTACTAATATCACTTT+TGG + tig0004894:41279-41298 Msa1341840:CDS 30.0%
AATCTATGAAACAGAAAAGG+AGG - tig0004894:41457-41476 None:intergenic 30.0%
GTGAATCTATGAAACAGAAA+AGG - tig0004894:41460-41479 None:intergenic 30.0%
TTTCTGTTTCATAGATTCAC+TGG + tig0004894:41460-41479 Msa1341840:intron 30.0%
CATCATGAAAGAGTTGAAAA+TGG - tig0004894:41490-41509 None:intergenic 30.0%
! CATTTTCAACTCTTTCATGA+TGG + tig0004894:41488-41507 Msa1341840:CDS 30.0%
ATGACTATGCAAAATATGCT+CGG + tig0004894:41562-41581 Msa1341840:CDS 30.0%
GAAAGAATAACTAAATAGCG+AGG - tig0004894:41784-41803 None:intergenic 30.0%
! TCATCTTACTGGCTATTATT+GGG + tig0004894:41851-41870 Msa1341840:CDS 30.0%
TTCAATTATCATGTAGCACA+TGG + tig0004894:41936-41955 Msa1341840:intron 30.0%
! TTTACACGACATGGATTATT+TGG - tig0004894:42517-42536 None:intergenic 30.0%
TCAATAAATATGCTGCCAAA+GGG - tig0004894:42616-42635 None:intergenic 30.0%
TTCAATAAATATGCTGCCAA+AGG - tig0004894:42617-42636 None:intergenic 30.0%
ACTGTTTGTGTAACAATTGT+CGG + tig0004894:42923-42942 Msa1341840:CDS 30.0%
ATACACATAAACTGATGTTG+AGG - tig0004894:43011-43030 None:intergenic 30.0%
! TACACTTTGATGTTTTCTCT+TGG + tig0004894:43103-43122 Msa1341840:CDS 30.0%
AGAAACATCAAGTGTGATTA+AGG + tig0004894:43322-43341 Msa1341840:CDS 30.0%
TTCTACCTGTAAACATTGTT+AGG - tig0004894:43435-43454 None:intergenic 30.0%
TTAGACATAAGTCCTTCAAT+GGG - tig0004894:43610-43629 None:intergenic 30.0%
ATTAGACATAAGTCCTTCAA+TGG - tig0004894:43611-43630 None:intergenic 30.0%
CTATCCAATGTAATGTAAAG+AGG + tig0004894:43656-43675 Msa1341840:three_prime_UTR 30.0%
ATCCAATGTAATGTAAAGAG+GGG + tig0004894:43658-43677 Msa1341840:three_prime_UTR 30.0%
!!! AATGGTGGTTTTGGTCTTAT+GGG - tig0004894:37220-37239 None:intergenic 35.0%
! GAAATGATGAATGGTGGTTT+TGG - tig0004894:37229-37248 None:intergenic 35.0%
AGATTGAAGAGTGGAAAAGA+AGG - tig0004894:37270-37289 None:intergenic 35.0%
! TAACGCTTTTGTGTTGTGTT+GGG + tig0004894:37351-37370 Msa1341840:five_prime_UTR 35.0%
AAATGAAGAGAGAGAAGAAG+AGG - tig0004894:37444-37463 None:intergenic 35.0%
TGAGATCGGGAAAAAAAGAT+GGG - tig0004894:37513-37532 None:intergenic 35.0%
ATGAGATCGGGAAAAAAAGA+TGG - tig0004894:37514-37533 None:intergenic 35.0%
GTAGATCAAATCATGAGATC+GGG - tig0004894:37526-37545 None:intergenic 35.0%
!!! ACCCTTTTAGCTTTTAGCTT+CGG + tig0004894:37587-37606 Msa1341840:intron 35.0%
TCCGAAGCTAAAAGCTAAAA+GGG - tig0004894:37591-37610 None:intergenic 35.0%
ATCCGAAGCTAAAAGCTAAA+AGG - tig0004894:37592-37611 None:intergenic 35.0%
!!! TAGCTTTTAGCTTCGGATTT+TGG + tig0004894:37594-37613 Msa1341840:intron 35.0%
!!! TTAGCTTCGGATTTTGGTTT+TGG + tig0004894:37600-37619 Msa1341840:CDS 35.0%
!!! TCGGATTTTGGTTTTGGAAT+TGG + tig0004894:37606-37625 Msa1341840:CDS 35.0%
AATAAATCACTGTAGTGCTG+AGG + tig0004894:37849-37868 Msa1341840:intron 35.0%
GATTAATGTGCCTGATTAAC+AGG + tig0004894:37922-37941 Msa1341840:intron 35.0%
ATGCATGGATTCAATTGTCA+TGG + tig0004894:37969-37988 Msa1341840:intron 35.0%
CATAAACAACCAAACAACTG+CGG - tig0004894:38003-38022 None:intergenic 35.0%
TGTTTATGTCTTAGCGATCA+TGG + tig0004894:38015-38034 Msa1341840:intron 35.0%
! CAGTTGGCAATCTTTTTATG+TGG + tig0004894:38081-38100 Msa1341840:intron 35.0%
TTCATGATTCTACAACAGTG+AGG + tig0004894:38135-38154 Msa1341840:intron 35.0%
CTGAAAAGAATTGAGTGTGT+AGG + tig0004894:38222-38241 Msa1341840:intron 35.0%
CTTTACTTACTCTATAGGCA+TGG + tig0004894:38744-38763 Msa1341840:intron 35.0%
AAGCTAATAGATATAGGGGT+TGG - tig0004894:38812-38831 None:intergenic 35.0%
CAAACTAAGAAACACACATC+GGG + tig0004894:39499-39518 Msa1341840:intron 35.0%
AAACTAAGAAACACACATCG+GGG + tig0004894:39500-39519 Msa1341840:intron 35.0%
GGTTTATACTCTTGCTCAAA+GGG - tig0004894:39534-39553 None:intergenic 35.0%
TGGTTTATACTCTTGCTCAA+AGG - tig0004894:39535-39554 None:intergenic 35.0%
ACAATCTTAGAATCAGCATC+AGG + tig0004894:39640-39659 Msa1341840:intron 35.0%
CAATCTTAGAATCAGCATCA+GGG + tig0004894:39641-39660 Msa1341840:intron 35.0%
CATCTTCTAATCAATCCTAG+AGG + tig0004894:39705-39724 Msa1341840:intron 35.0%
!!! TGAACTGTTTTAGCATCCAA+TGG + tig0004894:39929-39948 Msa1341840:intron 35.0%
CCTATTGATGAATCATTTGC+AGG - tig0004894:39982-40001 None:intergenic 35.0%
CCTGCAAATGATTCATCAAT+AGG + tig0004894:39979-39998 Msa1341840:intron 35.0%
TGCACCTATTGATGAATCAT+TGG + tig0004894:40035-40054 Msa1341840:intron 35.0%
! GGAAGTCACAGAACTATTTT+AGG - tig0004894:40111-40130 None:intergenic 35.0%
!!! TACAATAATGTTTTGGCCTC+TGG + tig0004894:40348-40367 Msa1341840:intron 35.0%
!!! ACAATAATGTTTTGGCCTCT+GGG + tig0004894:40349-40368 Msa1341840:intron 35.0%
!! GATAGCTTACTGTTGATAAC+AGG + tig0004894:40430-40449 Msa1341840:intron 35.0%
ATTCAGATGATCTTCCTTTG+TGG + tig0004894:40893-40912 Msa1341840:intron 35.0%
TTCAGATGATCTTCCTTTGT+GGG + tig0004894:40894-40913 Msa1341840:intron 35.0%
ACCAAATAAAGAGAAAGAGG+CGG - tig0004894:40932-40951 None:intergenic 35.0%
CACACCAAATAAAGAGAAAG+AGG - tig0004894:40935-40954 None:intergenic 35.0%
ATCCGTGGAGTTTCATATTT+AGG + tig0004894:41157-41176 Msa1341840:intron 35.0%
GACCTAAATATGAAACTCCA+CGG - tig0004894:41162-41181 None:intergenic 35.0%
CGTCCAAAAGTGATATTAGT+AGG - tig0004894:41285-41304 None:intergenic 35.0%
TCATTGATACCAATCCAGTA+AGG - tig0004894:41521-41540 None:intergenic 35.0%
TGACTATGCAAAATATGCTC+GGG + tig0004894:41563-41582 Msa1341840:CDS 35.0%
! AGATGATGATTTGGAATCTC+TGG + tig0004894:41587-41606 Msa1341840:CDS 35.0%
GTCATTGCTTACATGTTTAC+AGG + tig0004894:41699-41718 Msa1341840:intron 35.0%
AGAATAACTAAATAGCGAGG+AGG - tig0004894:41781-41800 None:intergenic 35.0%
GTTATTCTTTCAGCTGTAGT+TGG + tig0004894:41793-41812 Msa1341840:CDS 35.0%
! GTCATCTTACTGGCTATTAT+TGG + tig0004894:41850-41869 Msa1341840:CDS 35.0%
CATTCTCTTAATTGTGTCTC+AGG + tig0004894:42071-42090 Msa1341840:intron 35.0%
! GAGAGCATAACAAACAATGA+AGG - tig0004894:42116-42135 None:intergenic 35.0%
!! TTCATTTCTGGTTATGTGAG+TGG + tig0004894:42142-42161 Msa1341840:CDS 35.0%
!! TCATTTCTGGTTATGTGAGT+GGG + tig0004894:42143-42162 Msa1341840:CDS 35.0%
TTTGCATGTTAGGTAAAAGC+TGG + tig0004894:42287-42306 Msa1341840:intron 35.0%
TAAAGAAGCTGTAAGGATCA+TGG - tig0004894:42320-42339 None:intergenic 35.0%
ATGGGAATAAAGAAGCTGTA+AGG - tig0004894:42327-42346 None:intergenic 35.0%
TTATTCCCATTCATGTGCTT+TGG + tig0004894:42337-42356 Msa1341840:CDS 35.0%
CAATTCCAAAGCACATGAAT+GGG - tig0004894:42345-42364 None:intergenic 35.0%
!!! TGGTGGTTGTTTTTGTCATT+TGG + tig0004894:42428-42447 Msa1341840:CDS 35.0%
!!! GGTGGTTGTTTTTGTCATTT+GGG + tig0004894:42429-42448 Msa1341840:CDS 35.0%
! GGAATAGTTTTTACACGACA+TGG - tig0004894:42526-42545 None:intergenic 35.0%
CAATAAATATGCTGCCAAAG+GGG - tig0004894:42615-42634 None:intergenic 35.0%
!! TACTTCCTTCTGGAATTACA+AGG + tig0004894:42651-42670 Msa1341840:CDS 35.0%
AAACAGGTGTACTATGTGTA+TGG + tig0004894:42863-42882 Msa1341840:intron 35.0%
TGTTACACAAACAGTAACGA+TGG - tig0004894:42918-42937 None:intergenic 35.0%
CTGTTTGTGTAACAATTGTC+GGG + tig0004894:42924-42943 Msa1341840:CDS 35.0%
! TTCCAAACCAGCTTCTATTT+TGG + tig0004894:43079-43098 Msa1341840:CDS 35.0%
ATCCAAAATAGAAGCTGGTT+TGG - tig0004894:43084-43103 None:intergenic 35.0%
AGTGTATCCAAAATAGAAGC+TGG - tig0004894:43089-43108 None:intergenic 35.0%
! TTGATGTTTTCTCTTGGACT+AGG + tig0004894:43109-43128 Msa1341840:CDS 35.0%
TTTCATCCTGCATATGTGAT+AGG + tig0004894:43168-43187 Msa1341840:intron 35.0%
AGATATCCTATCACATATGC+AGG - tig0004894:43177-43196 None:intergenic 35.0%
AAACTTTCAACCAACAGTTC+AGG - tig0004894:43239-43258 None:intergenic 35.0%
! AAGTTTTTGTTCCAATGTGC+AGG + tig0004894:43253-43272 Msa1341840:intron 35.0%
! GTTCCAATTTGTTTGTGAGA+AGG + tig0004894:43293-43312 Msa1341840:CDS 35.0%
GATCCTTCTCACAAACAAAT+TGG - tig0004894:43299-43318 None:intergenic 35.0%
! TAAGGTTTTCTGAGTCAAAC+CGG + tig0004894:43340-43359 Msa1341840:exon 35.0%
TGCTGGAGACAATAAATTCT+TGG + tig0004894:43382-43401 Msa1341840:three_prime_UTR 35.0%
TGGAGACAATAAATTCTTGG+AGG + tig0004894:43385-43404 Msa1341840:three_prime_UTR 35.0%
ATGTTTACAGGTAGAATCAC+AGG + tig0004894:43439-43458 Msa1341840:three_prime_UTR 35.0%
TGTTTACAGGTAGAATCACA+GGG + tig0004894:43440-43459 Msa1341840:three_prime_UTR 35.0%
TAAAGACAGTCAATTACAGC+CGG - tig0004894:43523-43542 None:intergenic 35.0%
! TGGGGCTCCTATTTTATAAA+GGG - tig0004894:43591-43610 None:intergenic 35.0%
! ATGGGGCTCCTATTTTATAA+AGG - tig0004894:43592-43611 None:intergenic 35.0%
TAGACATAAGTCCTTCAATG+GGG - tig0004894:43609-43628 None:intergenic 35.0%
TTATGTCTAATTCCCCAACA+TGG + tig0004894:43620-43639 Msa1341840:three_prime_UTR 35.0%
TTGGAACTTGAAACCATGTT+GGG - tig0004894:43636-43655 None:intergenic 35.0%
TTCCCCTCTTTACATTACAT+TGG - tig0004894:43663-43682 None:intergenic 35.0%
!!! GAATGGTGGTTTTGGTCTTA+TGG - tig0004894:37221-37240 None:intergenic 40.0%
GAAGAGTGGAAAAGAAGGTA+AGG - tig0004894:37265-37284 None:intergenic 40.0%
CGTTGTTGAAGATTGAAGAG+TGG - tig0004894:37279-37298 None:intergenic 40.0%
! GTAACGCTTTTGTGTTGTGT+TGG + tig0004894:37350-37369 Msa1341840:five_prime_UTR 40.0%
AGAAGAGGAAGAAGATGGAT+CGG - tig0004894:37429-37448 None:intergenic 40.0%
AGAGAAGAAGAGGAAGAAGA+TGG - tig0004894:37434-37453 None:intergenic 40.0%
TTCTCTGCTCAGTTGTGATT+TGG + tig0004894:37549-37568 Msa1341840:intron 40.0%
! GTTGGATCTTACTGGGTTTT+TGG + tig0004894:37668-37687 Msa1341840:CDS 40.0%
! TGTGCCTGATTAACAGGTTT+TGG + tig0004894:37928-37947 Msa1341840:intron 40.0%
ACAGTGAGGTTGACAATTGT+TGG + tig0004894:38149-38168 Msa1341840:intron 40.0%
CAATAATATTGCCAGCAGAG+AGG - tig0004894:38176-38195 None:intergenic 40.0%
TAACACATCAGATGATGTCC+TGG - tig0004894:38381-38400 None:intergenic 40.0%
TAGTTAAAGACAGAGAGCAG+AGG - tig0004894:38688-38707 None:intergenic 40.0%
GGATGATCCTGTTAACCTTT+GGG + tig0004894:38954-38973 Msa1341840:CDS 40.0%
TTGTTCACCCAAAGGTTAAC+AGG - tig0004894:38964-38983 None:intergenic 40.0%
AACCTTTGGGTGAACAAAGT+TGG + tig0004894:38967-38986 Msa1341840:CDS 40.0%
TACTAGATGGGTGGCAAAAT+GGG - tig0004894:39035-39054 None:intergenic 40.0%
!! CAGCAGTAGAAGTACTAGAT+GGG - tig0004894:39047-39066 None:intergenic 40.0%
TTCTACTGCTGCACACAAAT+GGG + tig0004894:39056-39075 Msa1341840:CDS 40.0%
! TAAAACGGTCTTTTGCCAGA+TGG + tig0004894:39238-39257 Msa1341840:CDS 40.0%
TTGCATCATCAAGATCCATC+TGG - tig0004894:39256-39275 None:intergenic 40.0%
!! GATGGATCTTGATGATGCAA+AGG + tig0004894:39256-39275 Msa1341840:CDS 40.0%
! GCTAGCATGAAGTTTTCCTT+AGG + tig0004894:39409-39428 Msa1341840:intron 40.0%
AGACTAAACAAGCCATGAAG+TGG + tig0004894:39728-39747 Msa1341840:intron 40.0%
! TGTATGATGATGAAGCCAGA+AGG - tig0004894:40081-40100 None:intergenic 40.0%
TGGCTTCATCATCATACAGT+TGG + tig0004894:40083-40102 Msa1341840:intron 40.0%
TGGTCTTCACTTGAGAATCA+GGG + tig0004894:40270-40289 Msa1341840:intron 40.0%
ATCAGGGATATAGTTACACC+AGG + tig0004894:40286-40305 Msa1341840:intron 40.0%
AGTTAGCACATGACAACTGA+GGG - tig0004894:40320-40339 None:intergenic 40.0%
!!! CAATAATGTTTTGGCCTCTG+GGG + tig0004894:40350-40369 Msa1341840:intron 40.0%
CATACTCCTTTGACAGACAT+TGG - tig0004894:40457-40476 None:intergenic 40.0%
TCAGATGATCTTCCTTTGTG+GGG + tig0004894:40895-40914 Msa1341840:intron 40.0%
ACCGCCTCTTTCTCTTTATT+TGG + tig0004894:40928-40947 Msa1341840:intron 40.0%
CCATTATCGCTATGCTTATC+AGG - tig0004894:41034-41053 None:intergenic 40.0%
CCTGATAAGCATAGCGATAA+TGG + tig0004894:41031-41050 Msa1341840:CDS 40.0%
ACATGAATGATCTGCACAGA+AGG - tig0004894:41186-41205 None:intergenic 40.0%
AATTCTCAGTCACAGAGCTA+AGG - tig0004894:41429-41448 None:intergenic 40.0%
ATGATGGTCATCTTCCTTAC+TGG + tig0004894:41504-41523 Msa1341840:CDS 40.0%
! TGATTTGGAATCTCTGGTGA+TGG + tig0004894:41593-41612 Msa1341840:intron 40.0%
AGAGACGTTAGTGAAGAATC+TGG + tig0004894:41724-41743 Msa1341840:CDS 40.0%
! TTGTGCACGGTGATGTTTTT+CGG + tig0004894:41755-41774 Msa1341840:CDS 40.0%
GGTTCTTCTTGTCATCTTAC+TGG + tig0004894:41840-41859 Msa1341840:CDS 40.0%
TGGCAGAGAATGAAAAGCAA+TGG - tig0004894:42046-42065 None:intergenic 40.0%
!! CATTTCTGGTTATGTGAGTG+GGG + tig0004894:42144-42163 Msa1341840:CDS 40.0%
!! ATTTCTGGTTATGTGAGTGG+GGG + tig0004894:42145-42164 Msa1341840:CDS 40.0%
CCAATTCCAAAGCACATGAA+TGG - tig0004894:42346-42365 None:intergenic 40.0%
!! CCATTCATGTGCTTTGGAAT+TGG + tig0004894:42343-42362 Msa1341840:CDS 40.0%
GTACAGTTGTTGGAAGAAAC+TGG + tig0004894:42482-42501 Msa1341840:CDS 40.0%
TACCACTTCTTCTCAGGAAT+GGG - tig0004894:42553-42572 None:intergenic 40.0%
GTTCACCTTGTAATTCCAGA+AGG - tig0004894:42659-42678 None:intergenic 40.0%
TTTCCTCCTTTGTGACAAAC+AGG + tig0004894:42847-42866 Msa1341840:intron 40.0%
AGTACACCTGTTTGTCACAA+AGG - tig0004894:42856-42875 None:intergenic 40.0%
!! TGTGTATGGCTTTATGCTAC+TGG + tig0004894:42877-42896 Msa1341840:CDS 40.0%
TAAATGCTGAGAACTACCAC+TGG + tig0004894:42960-42979 Msa1341840:CDS 40.0%
TACGTGAAGACAAAGATGTC+AGG + tig0004894:43052-43071 Msa1341840:CDS 40.0%
ACGTGAAGACAAAGATGTCA+GGG + tig0004894:43053-43072 Msa1341840:CDS 40.0%
! CTTGGACTAGGAATTCTTTG+CGG + tig0004894:43121-43140 Msa1341840:CDS 40.0%
! GCTTTTATCACCTGAACTGT+TGG + tig0004894:43226-43245 Msa1341840:intron 40.0%
GGGAACCTAACAATGTTTAC+AGG + tig0004894:43427-43446 Msa1341840:three_prime_UTR 40.0%
!!! ATCACAGGGTTTTGGTAATG+AGG + tig0004894:43454-43473 Msa1341840:three_prime_UTR 40.0%
!!! TCACAGGGTTTTGGTAATGA+GGG + tig0004894:43455-43474 Msa1341840:three_prime_UTR 40.0%
AAAGACAGTCAATTACAGCC+GGG - tig0004894:43522-43541 None:intergenic 40.0%
TAAAATAGGAGCCCCATTGA+AGG + tig0004894:43595-43614 Msa1341840:three_prime_UTR 40.0%
TGGAACTTGAAACCATGTTG+GGG - tig0004894:43635-43654 None:intergenic 40.0%
GTTGGAACTTGAAACCATGT+TGG - tig0004894:43637-43656 None:intergenic 40.0%
!! TGGTGATGGATGGGTTGAAT+TGG - tig0004894:37390-37409 None:intergenic 45.0%
GAAGAGGAAGAAGATGGATC+GGG - tig0004894:37428-37447 None:intergenic 45.0%
!! GTGATCTGATTCTGAAGCGA+AGG - tig0004894:37473-37492 None:intergenic 45.0%
CGCTTCAGAATCAGATCACA+AGG + tig0004894:37474-37493 Msa1341840:CDS 45.0%
! AAATCACTGTAGTGCTGAGG+TGG + tig0004894:37852-37871 Msa1341840:intron 45.0%
!! ATAGCTTGCTGTTGCATGCA+TGG + tig0004894:37954-37973 Msa1341840:intron 45.0%
GAATCGAATCCGCAGTTGTT+TGG + tig0004894:37991-38010 Msa1341840:intron 45.0%
! TGGTCTTAACGTGCACTTAG+GGG - tig0004894:38361-38380 None:intergenic 45.0%
!! CTGGTCTTAACGTGCACTTA+GGG - tig0004894:38362-38381 None:intergenic 45.0%
CATGGCTGTCCGAATAAAGT+TGG - tig0004894:38495-38514 None:intergenic 45.0%
CAACTTTATTCGGACAGCCA+TGG + tig0004894:38493-38512 Msa1341840:intron 45.0%
GATGCATCAATCTGCTTCAC+TGG - tig0004894:38856-38875 None:intergenic 45.0%
GGGATGATCCTGTTAACCTT+TGG + tig0004894:38953-38972 Msa1341840:CDS 45.0%
GTCCAACTTTGTTCACCCAA+AGG - tig0004894:38972-38991 None:intergenic 45.0%
GTACTAGATGGGTGGCAAAA+TGG - tig0004894:39036-39055 None:intergenic 45.0%
!! CAGTAGAAGTACTAGATGGG+TGG - tig0004894:39044-39063 None:intergenic 45.0%
!! GCAGCAGTAGAAGTACTAGA+TGG - tig0004894:39048-39067 None:intergenic 45.0%
CTTCTACTGCTGCACACAAA+TGG + tig0004894:39055-39074 Msa1341840:CDS 45.0%
TCTACTGCTGCACACAAATG+GGG + tig0004894:39057-39076 Msa1341840:CDS 45.0%
! GATGTTAGTGTACTGGCCTA+AGG - tig0004894:39428-39447 None:intergenic 45.0%
AATTGGATAGCGAAGACAGC+AGG - tig0004894:39606-39625 None:intergenic 45.0%
!! TGGCTTGTTTAGTCTCCTCT+AGG - tig0004894:39723-39742 None:intergenic 45.0%
CTCAAGTCAAGACCACTTCA+TGG - tig0004894:39743-39762 None:intergenic 45.0%
TAGCATCCAATGGTACGATG+AGG + tig0004894:39939-39958 Msa1341840:intron 45.0%
AGACTTCCTCATCGTACCAT+TGG - tig0004894:39948-39967 None:intergenic 45.0%
TGATTCTCGTAGCCATGAAG+TGG + tig0004894:40250-40269 Msa1341840:intron 45.0%
CTCAAGTGAAGACCACTTCA+TGG - tig0004894:40265-40284 None:intergenic 45.0%
GTGGTCTTCACTTGAGAATC+AGG + tig0004894:40269-40288 Msa1341840:intron 45.0%
GTTAGCACATGACAACTGAG+GGG - tig0004894:40319-40338 None:intergenic 45.0%
CAGTTAGCACATGACAACTG+AGG - tig0004894:40321-40340 None:intergenic 45.0%
TCAACAGTAAGCTATCGGTG+TGG - tig0004894:40426-40445 None:intergenic 45.0%
ACAGGACCAATGTCTGTCAA+AGG + tig0004894:40448-40467 Msa1341840:intron 45.0%
TAGAATGCCTTGGTCAGTGT+TGG + tig0004894:40585-40604 Msa1341840:intron 45.0%
CTGAAAACCAACACTGACCA+AGG - tig0004894:40595-40614 None:intergenic 45.0%
!! ACCTCTAGAACCGAGAAGTA+TGG + tig0004894:40622-40641 Msa1341840:intron 45.0%
! TCCATACTTCTCGGTTCTAG+AGG - tig0004894:40626-40645 None:intergenic 45.0%
! TGAGTGAGGGTTTGTTCTGA+TGG + tig0004894:40740-40759 Msa1341840:intron 45.0%
!! GTTATTTCTCTGGTCTGCTC+TGG + tig0004894:40854-40873 Msa1341840:intron 45.0%
AAAGAGAAAGAGGCGGTTCT+AGG - tig0004894:40925-40944 None:intergenic 45.0%
! AAATGTTTTCCTGCCTCCAC+AGG - tig0004894:41234-41253 None:intergenic 45.0%
TGTGGAGGCAGGAAAACATT+TGG + tig0004894:41233-41252 Msa1341840:CDS 45.0%
AGTCCAGGTAGACATCAAAG+CGG - tig0004894:41308-41327 None:intergenic 45.0%
GCTCAAAGAAAGGATAGTCC+AGG - tig0004894:41323-41342 None:intergenic 45.0%
CTATCCTTTCTTTGAGCACC+AGG + tig0004894:41326-41345 Msa1341840:CDS 45.0%
TGTACCTGGTGCTCAAAGAA+AGG - tig0004894:41333-41352 None:intergenic 45.0%
GGTCATCTTCCTTACTGGAT+TGG + tig0004894:41509-41528 Msa1341840:CDS 45.0%
TGCTCGGGAAGATGATGATT+TGG + tig0004894:41578-41597 Msa1341840:CDS 45.0%
ACGTTAGTGAAGAATCTGGC+TGG + tig0004894:41728-41747 Msa1341840:CDS 45.0%
CATAGCTGAGATATGCATGC+AGG - tig0004894:41967-41986 None:intergenic 45.0%
TCTTAATTGTGTCTCAGGCG+AGG + tig0004894:42076-42095 Msa1341840:intron 45.0%
GCTCTCACATCGTTCATTTC+TGG + tig0004894:42130-42149 Msa1341840:CDS 45.0%
!! TTTCTGGTTATGTGAGTGGG+GGG + tig0004894:42146-42165 Msa1341840:CDS 45.0%
CAGTTCTTTCTCTCTCTCTC+TGG + tig0004894:42237-42256 Msa1341840:intron 45.0%
TCTCTAGCTGCTATCCCATT+TGG + tig0004894:42400-42419 Msa1341840:CDS 45.0%
TGCTATCCCATTTGGCACAA+TGG + tig0004894:42408-42427 Msa1341840:CDS 45.0%
TATCCCATTTGGCACAATGG+TGG + tig0004894:42411-42430 Msa1341840:CDS 45.0%
CAACCACCATTGTGCCAAAT+GGG - tig0004894:42417-42436 None:intergenic 45.0%
ACAACCACCATTGTGCCAAA+TGG - tig0004894:42418-42437 None:intergenic 45.0%
TCTTTCCCTCTTGCACTTCT+TGG + tig0004894:42460-42479 Msa1341840:CDS 45.0%
! CTGTACCAAGAAGTGCAAGA+GGG - tig0004894:42468-42487 None:intergenic 45.0%
! ACTGTACCAAGAAGTGCAAG+AGG - tig0004894:42469-42488 None:intergenic 45.0%
GCACTTCTTGGTACAGTTGT+TGG + tig0004894:42472-42491 Msa1341840:CDS 45.0%
GTTGTTGGAAGAAACTGGAG+TGG + tig0004894:42487-42506 Msa1341840:CDS 45.0%
GTACCACTTCTTCTCAGGAA+TGG - tig0004894:42554-42573 None:intergenic 45.0%
ACCTTCAGTGGTTTCTCTGA+TGG + tig0004894:42579-42598 Msa1341840:CDS 45.0%
CCTTCAGTGGTTTCTCTGAT+GGG + tig0004894:42580-42599 Msa1341840:CDS 45.0%
TTAGCGAACACACACACTGT+TGG + tig0004894:42811-42830 Msa1341840:intron 45.0%
ACACCTGTTTGTCACAAAGG+AGG - tig0004894:42853-42872 None:intergenic 45.0%
AAATTCTTGGAGGAAGCCTC+TGG + tig0004894:43395-43414 Msa1341840:three_prime_UTR 45.0%
! CAGGTAGAATCACAGGGTTT+TGG + tig0004894:43446-43465 Msa1341840:three_prime_UTR 45.0%
!!! GAAGCCTGAGATTTTTTCCC+CGG + tig0004894:43501-43520 Msa1341840:three_prime_UTR 45.0%
AAGACAGTCAATTACAGCCG+GGG - tig0004894:43521-43540 None:intergenic 45.0%
!!! AAATTATTAAATTTAAAACA+AGG - tig0004894:40778-40797 None:intergenic 5.0%
!!! TATATTTTTTTTAATGTTTA+AGG + tig0004894:40989-41008 Msa1341840:intron 5.0%
!!! AATATTGAAATATTTATTTT+TGG + tig0004894:41372-41391 Msa1341840:intron 5.0%
!! AGGACATGGTGGTGATGGAT+GGG - tig0004894:37399-37418 None:intergenic 50.0%
!! AAGGACATGGTGGTGATGGA+TGG - tig0004894:37400-37419 None:intergenic 50.0%
! TTGGAAGGACATGGTGGTGA+TGG - tig0004894:37404-37423 None:intergenic 50.0%
GAAGATGGATCGGGATTGGA+AGG - tig0004894:37419-37438 None:intergenic 50.0%
GGAAGAAGATGGATCGGGAT+TGG - tig0004894:37423-37442 None:intergenic 50.0%
CAATTGTTGGTCCTCTCTGC+TGG + tig0004894:38162-38181 Msa1341840:intron 50.0%
!! CCTGGTCTTAACGTGCACTT+AGG - tig0004894:38363-38382 None:intergenic 50.0%
CCTAAGTGCACGTTAAGACC+AGG + tig0004894:38360-38379 Msa1341840:intron 50.0%
!! CACTGGCTCATCAGGGAAAA+AGG - tig0004894:38839-38858 None:intergenic 50.0%
!! TCTGCTTCACTGGCTCATCA+GGG - tig0004894:38846-38865 None:intergenic 50.0%
!! ATCTGCTTCACTGGCTCATC+AGG - tig0004894:38847-38866 None:intergenic 50.0%
ATAGCGAAGACAGCAGGCAT+GGG - tig0004894:39600-39619 None:intergenic 50.0%
CAGGGAGATCTCACTAGAAG+AGG + tig0004894:39659-39678 Msa1341840:intron 50.0%
GAGATCTCACTAGAAGAGGC+TGG + tig0004894:39663-39682 Msa1341840:intron 50.0%
GGTACGATGAGGAAGTCTGA+AGG + tig0004894:39950-39969 Msa1341840:intron 50.0%
GATGCTCTCTTGCTACCTTC+TGG + tig0004894:40063-40082 Msa1341840:intron 50.0%
ACATGACAACTGAGGGGATC+TGG - tig0004894:40313-40332 None:intergenic 50.0%
TAGTGTCTATCTCACCCCAG+AGG - tig0004894:40367-40386 None:intergenic 50.0%
ACACTACCTGGATCTGAGCT+TGG + tig0004894:40381-40400 Msa1341840:intron 50.0%
CACTACCTGGATCTGAGCTT+GGG + tig0004894:40382-40401 Msa1341840:intron 50.0%
! GTTCTAGGCATACCCCACAA+AGG - tig0004894:40910-40929 None:intergenic 50.0%
TCAAGATGTCCCAAAGCCTG+TGG + tig0004894:41215-41234 Msa1341840:CDS 50.0%
GAGCTAAGGCAGGATCAACA+TGG - tig0004894:41415-41434 None:intergenic 50.0%
TCTGGCTGGAAACTTGTGCA+CGG + tig0004894:41742-41761 Msa1341840:CDS 50.0%
CTTTCAGCTGTAGTTGGCAC+AGG + tig0004894:41799-41818 Msa1341840:CDS 50.0%
GGGGGATGTACTCACGAAAT+GGG + tig0004894:42164-42183 Msa1341840:CDS 50.0%
GGGGATGTACTCACGAAATG+GGG + tig0004894:42165-42184 Msa1341840:CDS 50.0%
GGGATGTACTCACGAAATGG+GGG + tig0004894:42166-42185 Msa1341840:CDS 50.0%
TGTACTCACGAAATGGGGGT+AGG + tig0004894:42170-42189 Msa1341840:intron 50.0%
TTCTTCTCAGGAATGGGACG+AGG - tig0004894:42547-42566 None:intergenic 50.0%
GTCCCATTCCTGAGAAGAAG+TGG + tig0004894:42548-42567 Msa1341840:CDS 50.0%
! GTGAGGTACCACTTCTTCTC+AGG - tig0004894:42559-42578 None:intergenic 50.0%
! GAGAAACCACTGAAGGTGTG+AGG - tig0004894:42576-42595 None:intergenic 50.0%
CCCATCAGAGAAACCACTGA+AGG - tig0004894:42583-42602 None:intergenic 50.0%
TCAGTGGTTTCTCTGATGGG+AGG + tig0004894:42583-42602 Msa1341840:CDS 50.0%
CTGAGAACTACCACTGGCAA+TGG + tig0004894:42966-42985 Msa1341840:CDS 50.0%
AGAAAGACGTCCATTGCCAG+TGG - tig0004894:42979-42998 None:intergenic 50.0%
TTCCAATGTGCAGGAGCTGT+AGG + tig0004894:43262-43281 Msa1341840:intron 50.0%
AACCTACAGCTCCTGCACAT+TGG - tig0004894:43267-43286 None:intergenic 50.0%
! GCAGGAGCTGTAGGTTTTCT+TGG + tig0004894:43271-43290 Msa1341840:intron 50.0%
! TCAAACCGGAGCACTTCCAT+AGG + tig0004894:43354-43373 Msa1341840:three_prime_UTR 50.0%
!! ACAAGCCTATGGAAGTGCTC+CGG - tig0004894:43362-43381 None:intergenic 50.0%
!! CACTTCCATAGGCTTGTTGC+TGG + tig0004894:43365-43384 Msa1341840:three_prime_UTR 50.0%
TGTCTCCAGCAACAAGCCTA+TGG - tig0004894:43373-43392 None:intergenic 50.0%
ACAGCCGGGGAAAAAATCTC+AGG - tig0004894:43508-43527 None:intergenic 50.0%
TCGGGATTGGAAGGACATGG+TGG - tig0004894:37410-37429 None:intergenic 55.0%
GGATCGGGATTGGAAGGACA+TGG - tig0004894:37413-37432 None:intergenic 55.0%
ACTGCTGCACACAAATGGGG+TGG + tig0004894:39060-39079 Msa1341840:CDS 55.0%
GCACACAAATGGGGTGGTCT+TGG + tig0004894:39066-39085 Msa1341840:CDS 55.0%
! CAAATGGGGTGGTCTTGGTG+AGG + tig0004894:39071-39090 Msa1341840:CDS 55.0%
! GGTGGTCTTGGTGAGGTTCT+GGG + tig0004894:39078-39097 Msa1341840:CDS 55.0%
ATGGGGCTGTGTCCTCTGAA+AGG - tig0004894:39582-39601 None:intergenic 55.0%
TAGCGAAGACAGCAGGCATG+GGG - tig0004894:39599-39618 None:intergenic 55.0%
GATAGCGAAGACAGCAGGCA+TGG - tig0004894:39601-39620 None:intergenic 55.0%
GGGGTGAGATAGACACTACC+TGG + tig0004894:40369-40388 Msa1341840:intron 55.0%
TGACACCCAAGCTCAGATCC+AGG - tig0004894:40390-40409 None:intergenic 55.0%
AGATGTCCCAAAGCCTGTGG+AGG + tig0004894:41218-41237 Msa1341840:CDS 55.0%
TTCCTGCCTCCACAGGCTTT+GGG - tig0004894:41227-41246 None:intergenic 55.0%
TTTCCTGCCTCCACAGGCTT+TGG - tig0004894:41228-41247 None:intergenic 55.0%
! ACGCCGCTTTGATGTCTACC+TGG + tig0004894:41302-41321 Msa1341840:CDS 55.0%
CTCAGTCACAGAGCTAAGGC+AGG - tig0004894:41425-41444 None:intergenic 55.0%
GGGGGGATGTACTCACGAAA+TGG + tig0004894:42163-42182 Msa1341840:CDS 55.0%
GTGGTACCTCACACCTTCAG+TGG + tig0004894:42567-42586 Msa1341840:CDS 55.0%
AGGAAGCCTCTGGTCATGTG+TGG + tig0004894:43405-43424 Msa1341840:three_prime_UTR 55.0%
GGAAGCCTCTGGTCATGTGT+GGG + tig0004894:43406-43425 Msa1341840:three_prime_UTR 55.0%
GAAGCCTCTGGTCATGTGTG+GGG + tig0004894:43407-43426 Msa1341840:three_prime_UTR 55.0%
! GGGTGGTCTTGGTGAGGTTC+TGG + tig0004894:39077-39096 Msa1341840:CDS 60.0%
!! GGTCTTGGTGAGGTTCTGGG+TGG + tig0004894:39081-39100 Msa1341840:CDS 60.0%
CAACTGAGGGGATCTGGACC+TGG - tig0004894:40307-40326 None:intergenic 60.0%
AGGTGCTCAGCTAGCACTGC+TGG + tig0004894:41819-41838 Msa1341840:CDS 60.0%
ATGGGAGGACTGCTCCCCTT+TGG + tig0004894:42598-42617 Msa1341840:CDS 60.0%
GGTTCCCCACACATGACCAG+AGG - tig0004894:43414-43433 None:intergenic 60.0%
GTCCCAAAGCCTGTGGAGGC+AGG + tig0004894:41222-41241 Msa1341840:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0004894 gene 37146 43774 37146 ID=Msa1341840;Name=Msa1341840
tig0004894 mRNA 37146 43774 37146 ID=Msa1341840-mRNA-1;Parent=Msa1341840;Name=Msa1341840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=266|0.72|0.91|0.91|1|1|12|432|614
tig0004894 exon 37146 37495 37146 ID=Msa1341840-mRNA-1:exon:3339;Parent=Msa1341840-mRNA-1
tig0004894 exon 37597 37689 37597 ID=Msa1341840-mRNA-1:exon:3340;Parent=Msa1341840-mRNA-1
tig0004894 exon 38946 39144 38946 ID=Msa1341840-mRNA-1:exon:3341;Parent=Msa1341840-mRNA-1
tig0004894 exon 39228 39332 39228 ID=Msa1341840-mRNA-1:exon:3342;Parent=Msa1341840-mRNA-1
tig0004894 exon 41011 41108 41011 ID=Msa1341840-mRNA-1:exon:3343;Parent=Msa1341840-mRNA-1
tig0004894 exon 41195 41347 41195 ID=Msa1341840-mRNA-1:exon:3344;Parent=Msa1341840-mRNA-1
tig0004894 exon 41474 41608 41474 ID=Msa1341840-mRNA-1:exon:3345;Parent=Msa1341840-mRNA-1
tig0004894 exon 41721 41887 41721 ID=Msa1341840-mRNA-1:exon:3346;Parent=Msa1341840-mRNA-1
tig0004894 exon 42093 42187 42093 ID=Msa1341840-mRNA-1:exon:3347;Parent=Msa1341840-mRNA-1
tig0004894 exon 42299 42672 42299 ID=Msa1341840-mRNA-1:exon:3348;Parent=Msa1341840-mRNA-1
tig0004894 exon 42869 43142 42869 ID=Msa1341840-mRNA-1:exon:3349;Parent=Msa1341840-mRNA-1
tig0004894 exon 43275 43774 43275 ID=Msa1341840-mRNA-1:exon:3350;Parent=Msa1341840-mRNA-1
tig0004894 five_prime_UTR 37146 37411 37146 ID=Msa1341840-mRNA-1:five_prime_utr;Parent=Msa1341840-mRNA-1
tig0004894 CDS 37412 37495 37412 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 37597 37689 37597 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 38946 39144 38946 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 39228 39332 39228 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 41011 41108 41011 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 41195 41347 41195 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 41474 41608 41474 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 41721 41887 41721 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 42093 42187 42093 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 42299 42672 42299 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 42869 43142 42869 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 CDS 43275 43342 43275 ID=Msa1341840-mRNA-1:cds;Parent=Msa1341840-mRNA-1
tig0004894 three_prime_UTR 43343 43774 43343 ID=Msa1341840-mRNA-1:three_prime_utr;Parent=Msa1341840-mRNA-1
Gene Sequence

>Msa1341840

ATGTCCTTCCAATCCCGATCCATCTTCTTCCTCTTCTTCTCTCTCTTCATTTCTTCAACCTTCGCTTCAGAATCAGATCACAAGCTTTTAGCTTCGGATTTTGGTTTTGGAATTGGTTTTATGAATGTTATGGTTGTAAAGTTGCGTTTTTTAGTGTTGGATCTTACTGGGTTTTTGTATCAACGGGATGATCCTGTTAACCTTTGGGTGAACAAAGTTGGACCCTATAACAATCCACAAGAAACATACAATTATTACAGTCTCCCATTTTGCCACCCATCTAGTACTTCTACTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTTCTGGGTGGCAATGAACTCATCGACAGCCAAATTGAGATCAAGTTCCTAAGAAATGTGGATAAAACGGTCTTTTGCCAGATGGATCTTGATGATGCAAAGGTTAAACAGTTCAAGCATGCAATAGAGAATAATTACTGGTTTGAATTTTTCATGGGATATGTTGGTGAGCTACATCCTGATAAGCATAGCGATAATGGCAAGCACGTCCTTTACACACACAAGAATATTATTGTTAAATACAATAATGATCAGATCATTCATGTTAATCTCACTCAAGATGTCCCAAAGCCTGTGGAGGCAGGAAAACATTTGGATTTGACATATTCTGTCAAATGGGTTCCTACTAATATCACTTTTGGACGCCGCTTTGATGTCTACCTGGACTATCCTTTCTTTGAGCACCAGATTCACTGGTTCTCCATTTTCAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTATCAATGATATTAATGCGAACTCTAAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAATCTCTGGAGAGAGACGTTAGTGAAGAATCTGGCTGGAAACTTGTGCACGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTTCAGCTGTAGTTGGCACAGGTGCTCAGCTAGCACTGCTGGTTCTTCTTGTCATCTTACTGGCTATTATTGGGATGTTGTATATTGGGCGAGGAGCAATTGTCACAACCTTCATTGTTTGTTATGCTCTCACATCGTTCATTTCTGGTTATGTGAGTGGGGGGATGTACTCACGAAATGGGGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTTTATTCCCATTCATGTGCTTTGGAATTGGATTTGCCTTAAACACTATTGCTATATTCTATGGGTCTCTAGCTGCTATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTTGCACTTCTTGGTACAGTTGTTGGAAGAAACTGGAGTGGTGCTCCAAATAATCCATGTCGTGTAAAAACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCTTCAGTGGTTTCTCTGATGGGAGGACTGCTCCCCTTTGGCAGCATATTTATTGAAATGTATTTTGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATGTGTATGGCTTTATGCTACTGGTTTTTCTGATTCTCACCATCGTTACTGTTTGTGTAACAATTGTCGGGACATACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGACGTCTTTCTTTTCAGCAGCCTCAACATCAGTTTATGTGTATTTATACTCAATATATTATTACTACGTGAAGACAAAGATGTCAGGGTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTCTTTGCGGAGCTGTAGGTTTTCTTGGTTCCAATTTGTTTGTGAGAAGGATCTACAGAAACATCAAGTGTGATTAA
Protein sequence

>Msa1341840

MSFQSRSIFFLFFSLFISSTFASESDHKLLASDFGFGIGFMNVMVVKLRFLVLDLTGFLYQRDDPVNLWVNKVGPYNNPQETYNYYSLPFCHPSSTSTAAHKWGGLGEVLGGNELIDSQIEIKFLRNVDKTVFCQMDLDDAKVKQFKHAIENNYWFEFFMGYVGELHPDKHSDNGKHVLYTHKNIIVKYNNDQIIHVNLTQDVPKPVEAGKHLDLTYSVKWVPTNITFGRRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLVHGDVFRPPRYLVILSAVVGTGAQLALLVLLVILLAIIGMLYIGRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASLFPFMCFGIGFALNTIAIFYGSLAAIPFGTMVVVFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILTIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTSVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFSLGLGILCGAVGFLGSNLFVRRIYRNIKCD*