AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077630 MtrunA17_Chr1g0187821 95.405 370 17 0 1 370 1 370 0.0 728
Msa0077630 MtrunA17_Chr1g0187811 83.069 378 56 4 1 370 116 493 0.0 654
Msa0077630 MtrunA17_Chr1g0187831 80.108 372 71 2 1 369 2 373 0.0 620
Msa0077630 MtrunA17_Chr7g0235951 63.243 370 129 3 4 370 8 373 2.56e-175 492
Msa0077630 MtrunA17_Chr8g0364471 60.743 377 137 4 1 370 1 373 4.49e-168 474
Msa0077630 MtrunA17_Chr4g0055591 62.291 358 126 3 15 370 11 361 9.71e-167 470
Msa0077630 MtrunA17_Chr8g0335411 63.014 365 128 3 9 370 13 373 2.20e-166 469
Msa0077630 MtrunA17_Chr7g0236011 63.710 372 126 4 2 370 8 373 3.06e-166 469
Msa0077630 MtrunA17_Chr7g0247991 62.534 371 130 4 4 370 8 373 1.39e-163 462
Msa0077630 MtrunA17_Chr2g0311701 59.128 367 143 3 8 370 12 375 4.87e-161 456
Msa0077630 MtrunA17_Chr2g0311711 60.989 364 138 3 8 370 10 370 2.70e-160 454
Msa0077630 MtrunA17_Chr4g0066991 61.892 370 114 5 4 370 8 353 2.11e-157 446
Msa0077630 MtrunA17_Chr2g0311681 56.354 362 151 3 13 370 11 369 1.02e-148 424
Msa0077630 MtrunA17_Chr2g0311691 56.077 362 152 3 13 370 11 369 1.21e-146 419
Msa0077630 MtrunA17_Chr8g0336751 55.041 367 162 2 4 370 34 397 7.51e-146 418
Msa0077630 MtrunA17_Chr8g0336851 51.705 352 161 4 21 370 20 364 5.97e-144 412
Msa0077630 MtrunA17_Chr8g0348081 53.239 355 157 4 18 370 17 364 2.31e-143 410
Msa0077630 MtrunA17_Chr8g0336761 53.239 355 157 4 18 370 17 364 4.00e-142 407
Msa0077630 MtrunA17_Chr8g0336631 52.528 356 159 5 18 370 17 365 3.36e-141 405
Msa0077630 MtrunA17_Chr8g0354241 51.081 370 175 4 4 370 8 374 3.93e-140 403
Msa0077630 MtrunA17_Chr8g0354261 51.081 370 175 4 4 370 8 374 6.93e-140 402
Msa0077630 MtrunA17_Chr8g0336861 52.101 357 160 6 18 370 17 366 4.58e-138 397
Msa0077630 MtrunA17_Chr2g0311741 58.055 329 135 2 42 370 2 327 5.93e-138 395
Msa0077630 MtrunA17_Chr8g0336781 50.562 356 166 5 18 370 52 400 6.54e-137 395
Msa0077630 MtrunA17_Chr2g0311761 50.811 370 176 4 2 370 8 372 7.13e-135 389
Msa0077630 MtrunA17_Chr2g0311831 51.220 369 175 3 2 370 8 371 2.19e-133 385
Msa0077630 MtrunA17_Chr2g0311921 50.838 358 172 3 14 370 4 358 1.18e-132 383
Msa0077630 MtrunA17_Chr6g0472861 50.933 375 170 5 5 370 4 373 6.75e-132 382
Msa0077630 MtrunA17_Chr4g0066121 54.030 335 144 5 18 349 17 344 1.92e-131 380
Msa0077630 MtrunA17_Chr1g0167951 50.418 359 168 4 14 370 5 355 8.64e-131 378
Msa0077630 MtrunA17_Chr2g0311861 50.140 357 155 3 14 370 14 347 1.13e-128 373
Msa0077630 MtrunA17_Chr1g0167911 50.571 350 168 3 14 363 5 349 5.14e-126 366
Msa0077630 MtrunA17_Chr4g0011311 61.644 292 104 3 1 288 1 288 7.70e-126 364
Msa0077630 MtrunA17_Chr1g0184241 49.862 363 174 4 8 370 13 367 6.87e-125 364
Msa0077630 MtrunA17_Chr7g0225881 48.118 372 182 5 5 370 4 370 6.80e-124 362
Msa0077630 MtrunA17_Chr7g0235981 49.171 362 145 5 12 370 2 327 1.62e-121 354
Msa0077630 MtrunA17_Chr1g0167961 49.025 359 175 5 14 370 20 372 1.46e-119 350
Msa0077630 MtrunA17_Chr8g0362741 58.904 292 97 5 1 288 1 273 2.06e-113 332
Msa0077630 MtrunA17_Chr1g0167931 45.658 357 151 4 14 370 5 318 5.69e-108 319
Msa0077630 MtrunA17_Chr7g0266651 42.373 354 199 4 11 363 6 355 3.50e-100 301
Msa0077630 MtrunA17_Chr1g0161081 44.167 360 189 7 13 369 21 371 3.27e-90 276
Msa0077630 MtrunA17_Chr1g0161041 43.855 358 193 4 13 369 44 394 5.46e-89 273
Msa0077630 MtrunA17_Chr1g0161111 42.541 362 200 4 9 369 76 430 8.69e-87 269
Msa0077630 MtrunA17_Chr8g0336831 47.826 230 112 4 18 245 17 240 9.42e-75 232
Msa0077630 MtrunA17_Chr8g0364161 56.322 174 72 2 5 178 9 178 2.76e-66 207
Msa0077630 MtrunA17_Chr8g0336801 60.265 151 60 0 220 370 6 156 3.06e-66 206
Msa0077630 MtrunA17_Chr8g0336871 54.335 173 73 1 193 365 3 169 1.34e-65 206
Msa0077630 MtrunA17_Chr3g0128001 35.174 344 205 7 32 369 5 336 2.46e-61 200
Msa0077630 MtrunA17_Chr7g0235991 54.268 164 73 1 45 208 1 162 9.86e-60 191
Msa0077630 MtrunA17_Chr5g0412651 35.275 309 188 4 57 357 28 332 5.37e-59 194
Msa0077630 MtrunA17_Chr8g0375571 32.853 347 201 9 40 370 20 350 1.81e-56 188
Msa0077630 MtrunA17_Chr7g0265221 33.425 365 215 9 14 357 10 367 2.65e-56 188
Msa0077630 MtrunA17_Chr8g0345831 32.609 322 201 4 56 370 31 343 5.61e-56 186
Msa0077630 MtrunA17_Chr5g0412681 33.871 310 185 5 57 358 23 320 2.04e-55 185
Msa0077630 MtrunA17_Chr5g0421041 33.043 345 199 10 39 370 21 346 5.90e-55 184
Msa0077630 MtrunA17_Chr7g0220011 35.000 300 181 6 66 360 38 328 7.40e-53 178
Msa0077630 MtrunA17_Chr7g0265351 32.581 310 190 5 63 365 35 332 1.55e-52 177
Msa0077630 MtrunA17_Chr3g0126741 32.759 348 214 11 8 344 2 340 1.56e-52 178
Msa0077630 MtrunA17_Chr7g0220001 34.884 301 176 7 66 358 40 328 2.48e-52 177
Msa0077630 MtrunA17_Chr5g0423191 32.070 343 203 10 41 370 23 348 3.66e-52 177
Msa0077630 MtrunA17_Chr8g0375701 31.742 356 223 8 24 370 11 355 5.26e-52 176
Msa0077630 MtrunA17_Chr7g0242551 32.425 367 216 10 19 366 5 358 8.13e-52 176
Msa0077630 MtrunA17_Chr6g0455481 35.161 310 177 9 59 358 35 330 2.81e-51 174
Msa0077630 MtrunA17_Chr5g0421011 33.038 339 207 8 40 370 22 348 2.91e-51 174
Msa0077630 MtrunA17_Chr5g0423251 32.849 344 201 10 40 370 22 348 3.57e-51 174
Msa0077630 MtrunA17_Chr8g0336791 44.809 183 93 4 18 198 17 193 4.03e-51 169
Msa0077630 MtrunA17_Chr5g0420951 33.041 342 205 10 40 370 27 355 7.37e-51 173
Msa0077630 MtrunA17_Chr5g0412671 33.546 313 192 6 59 359 30 338 8.28e-51 173
Msa0077630 MtrunA17_Chr1g0179801 32.493 357 218 9 28 370 26 373 9.25e-51 174
Msa0077630 MtrunA17_Chr5g0423221 31.642 335 208 10 40 365 46 368 1.34e-50 173
Msa0077630 MtrunA17_Chr5g0426891 31.494 308 203 6 67 370 39 342 1.62e-50 172
Msa0077630 MtrunA17_Chr2g0314391 30.793 328 207 9 55 370 54 373 3.71e-50 172
Msa0077630 MtrunA17_Chr1g0184111 34.084 311 190 5 66 369 36 338 4.13e-50 171
Msa0077630 MtrunA17_Chr1g0184161 33.010 309 195 6 66 369 37 338 7.11e-50 171
Msa0077630 MtrunA17_Chr1g0184121 33.442 308 196 4 66 369 36 338 7.72e-50 170
Msa0077630 MtrunA17_Chr5g0420941 30.857 350 220 9 29 370 11 346 8.46e-50 171
Msa0077630 MtrunA17_Chr5g0421101 30.792 341 212 9 40 370 22 348 2.61e-49 169
Msa0077630 MtrunA17_Chr3g0093741 32.184 348 211 9 28 365 17 349 3.26e-49 169
Msa0077630 MtrunA17_Chr3g0093761 32.565 347 210 10 28 365 17 348 3.35e-49 169
Msa0077630 MtrunA17_Chr3g0109041 30.226 354 224 8 29 370 10 352 4.29e-49 169
Msa0077630 MtrunA17_Chr5g0423201 32.164 342 207 10 40 370 22 349 1.33e-48 167
Msa0077630 MtrunA17_Chr2g0314381 28.000 350 233 8 29 370 42 380 2.08e-48 168
Msa0077630 MtrunA17_Chr2g0311631 28.763 372 239 8 4 366 3 357 2.41e-48 167
Msa0077630 MtrunA17_Chr1g0162351 32.295 353 196 10 47 370 57 395 3.05e-48 167
Msa0077630 MtrunA17_Chr1g0184151 33.550 307 194 5 66 368 37 337 3.13e-48 166
Msa0077630 MtrunA17_Chr5g0421091 31.909 351 216 12 29 370 11 347 3.21e-48 166
Msa0077630 MtrunA17_Chr3g0093751 30.925 346 218 8 28 365 17 349 5.39e-48 166
Msa0077630 MtrunA17_Chr4g0045431 34.043 329 162 12 47 343 14 319 8.16e-48 165
Msa0077630 MtrunA17_Chr1g0162321 32.295 353 196 10 47 370 57 395 9.48e-48 166
Msa0077630 MtrunA17_Chr4g0006371 31.564 358 218 9 29 365 14 365 1.39e-47 165
Msa0077630 MtrunA17_Chr5g0420901 30.000 350 223 9 29 370 12 347 4.03e-47 164
Msa0077630 MtrunA17_Chr4g0045411 32.441 299 170 8 66 342 29 317 4.04e-47 163
Msa0077630 MtrunA17_Chr2g0314401 30.484 351 224 10 28 370 16 354 4.44e-47 163
Msa0077630 MtrunA17_Chr8g0375601 29.412 340 224 7 40 370 20 352 6.25e-47 164
Msa0077630 MtrunA17_Chr2g0332191 33.631 336 190 11 52 369 35 355 6.87e-47 163
Msa0077630 MtrunA17_Chr5g0437181 31.250 352 221 9 29 369 14 355 7.51e-47 163
Msa0077630 MtrunA17_Chr1g0184101 33.121 314 190 8 66 370 37 339 1.27e-46 162
Msa0077630 MtrunA17_Chr8g0364171 67.273 110 36 0 179 288 17 126 3.04e-46 154
Msa0077630 MtrunA17_Chr8g0365241 30.547 311 203 6 66 370 56 359 3.20e-46 161
Msa0077630 MtrunA17_Chr8g0371921 32.963 270 172 4 54 315 24 292 4.18e-46 161
Msa0077630 MtrunA17_Chr8g0375671 29.781 319 212 6 59 370 44 357 4.41e-46 161
Msa0077630 MtrunA17_Chr4g0045451 30.588 340 193 10 47 362 14 334 9.72e-46 160
Msa0077630 MtrunA17_Chr4g0045441 33.230 322 174 10 47 343 14 319 1.75e-45 159
Msa0077630 MtrunA17_Chr3g0113641 30.084 359 234 9 20 369 6 356 1.78e-45 159
Msa0077630 MtrunA17_Chr5g0420981 30.625 320 205 8 59 370 45 355 3.99e-45 158
Msa0077630 MtrunA17_Chr8g0371931 32.700 263 168 4 61 315 31 292 6.54e-45 158
Msa0077630 MtrunA17_Chr3g0102041 32.700 263 168 4 61 315 31 292 2.41e-44 156
Msa0077630 MtrunA17_Chr1g0168001 45.029 171 87 5 14 180 5 172 4.37e-44 150
Msa0077630 MtrunA17_Chr4g0050031 31.317 281 184 7 67 342 62 338 1.81e-43 154
Msa0077630 MtrunA17_Chr7g0250511 31.973 294 183 6 66 351 48 332 6.49e-43 152
Msa0077630 MtrunA17_Chr2g0311751 55.738 122 54 0 59 180 19 140 7.24e-43 147
Msa0077630 MtrunA17_Chr1g0162191 30.164 305 203 5 67 366 47 346 7.36e-43 152
Msa0077630 MtrunA17_Chr5g0423211 29.060 351 227 9 29 370 13 350 1.31e-42 152
Msa0077630 MtrunA17_Chr1g0162361 30.581 327 193 7 67 370 27 342 1.34e-42 151
Msa0077630 MtrunA17_Chr4g0045471 31.715 309 174 8 75 353 29 330 3.58e-42 150
Msa0077630 MtrunA17_Chr3g0121141 33.557 298 174 11 66 354 3 285 6.78e-42 149
Msa0077630 MtrunA17_Chr5g0439011 33.444 302 175 10 65 354 3 290 7.40e-42 149
Msa0077630 MtrunA17_Chr3g0125201 30.421 309 177 11 65 356 1 288 1.32e-41 148
Msa0077630 MtrunA17_Chr2g0319491 30.619 307 182 8 52 349 20 304 2.58e-41 147
Msa0077630 MtrunA17_Chr7g0239111 29.236 301 197 7 67 360 55 346 2.60e-41 148
Msa0077630 MtrunA17_Chr7g0239821 29.073 313 192 8 66 364 63 359 3.11e-41 148
Msa0077630 MtrunA17_Chr8g0375681 31.636 275 179 4 101 370 15 285 3.62e-41 146
Msa0077630 MtrunA17_Chr5g0405411 30.798 263 173 4 61 315 31 292 6.68e-41 147
Msa0077630 MtrunA17_Chr2g0296371 29.582 311 198 7 67 365 50 351 1.86e-40 146
Msa0077630 MtrunA17_Chr2g0289341 31.353 303 178 12 68 355 5 292 3.04e-40 144
Msa0077630 MtrunA17_Chr7g0239121 27.778 306 202 8 67 363 51 346 8.65e-40 144
Msa0077630 MtrunA17_Chr1g0204181 31.908 304 177 6 67 351 59 351 9.75e-40 144
Msa0077630 MtrunA17_Chr5g0398291 28.696 345 214 10 29 353 8 340 1.90e-39 143
Msa0077630 MtrunA17_Chr5g0420721 36.041 197 122 2 175 370 57 250 3.82e-39 140
Msa0077630 MtrunA17_Chr7g0239101 28.197 305 201 7 67 363 55 349 6.69e-39 142
Msa0077630 MtrunA17_Chr1g0167921 52.941 119 56 0 169 287 38 156 9.34e-39 136
Msa0077630 MtrunA17_Chr6g0474391 30.462 325 196 8 39 346 40 351 1.85e-38 141
Msa0077630 MtrunA17_Chr8g0370721 30.841 321 199 10 61 370 46 354 7.89e-38 139
Msa0077630 MtrunA17_Chr8g0370711 30.000 310 195 10 61 358 46 345 1.28e-37 138
Msa0077630 MtrunA17_Chr7g0239091 27.451 306 206 5 67 370 160 451 2.77e-37 139
Msa0077630 MtrunA17_Chr1g0191201 29.042 334 192 10 42 351 33 345 3.10e-36 135
Msa0077630 MtrunA17_Chr3g0145171 28.197 305 198 8 61 355 46 339 3.92e-36 134
Msa0077630 MtrunA17_Chr4g0045461 30.581 327 189 8 40 343 7 318 1.02e-35 134
Msa0077630 MtrunA17_Chr3g0130391 28.333 360 222 9 8 346 9 353 1.05e-35 134
Msa0077630 MtrunA17_Chr5g0424201 28.443 334 205 8 34 351 12 327 5.97e-35 131
Msa0077630 MtrunA17_Chr3g0087031 29.032 310 190 8 65 360 58 351 1.96e-34 130
Msa0077630 MtrunA17_Chr5g0424211 29.283 321 189 10 39 340 15 316 3.59e-34 129
Msa0077630 MtrunA17_Chr4g0064781 29.450 309 188 10 50 345 34 325 1.31e-33 127
Msa0077630 MtrunA17_Chr8g0351101 29.641 334 196 7 39 351 30 345 1.89e-33 127
Msa0077630 MtrunA17_Chr7g0232161 30.894 246 151 6 65 300 58 294 2.66e-33 126
Msa0077630 MtrunA17_Chr3g0092531 32.800 250 133 9 85 318 26 256 1.90e-32 124
Msa0077630 MtrunA17_Chr1g0148771 28.440 327 195 10 52 365 50 350 2.86e-32 124
Msa0077630 MtrunA17_Chr6g0488511 28.421 285 179 11 65 338 1 271 3.74e-32 122
Msa0077630 MtrunA17_Chr2g0285931 28.701 331 178 10 67 370 28 327 4.01e-31 120
Msa0077630 MtrunA17_Chr2g0314371 28.431 306 179 9 28 303 16 311 2.16e-30 118
Msa0077630 MtrunA17_Chr3g0126761 36.585 164 99 2 178 339 42 202 3.45e-30 115
Msa0077630 MtrunA17_Chr3g0125421 27.003 337 199 11 40 351 14 328 9.66e-30 117
Msa0077630 MtrunA17_Chr8g0384461 25.937 347 223 8 24 351 6 337 1.07e-29 117
Msa0077630 MtrunA17_Chr3g0145201 27.597 308 208 9 51 349 667 968 2.12e-29 120
Msa0077630 MtrunA17_Chr5g0407731 29.712 313 183 11 67 366 33 321 2.44e-29 115
Msa0077630 MtrunA17_Chr8g0384481 27.273 330 199 9 42 350 38 347 7.92e-29 115
Msa0077630 MtrunA17_Chr3g0145181 27.273 297 202 8 61 349 43 333 8.75e-29 114
Msa0077630 MtrunA17_Chr2g0313111 28.814 295 176 12 66 346 27 301 1.83e-28 113
Msa0077630 MtrunA17_Chr3g0114861 30.000 310 193 7 59 357 32 328 2.24e-28 113
Msa0077630 MtrunA17_Chr5g0407781 27.607 326 183 13 66 370 4 297 4.26e-27 108
Msa0077630 MtrunA17_Chr7g0239071 24.908 273 194 5 99 365 29 296 1.64e-26 107
Msa0077630 MtrunA17_Chr1g0170631 30.000 190 127 3 178 365 1 186 2.60e-26 104
Msa0077630 MtrunA17_Chr3g0114871 28.745 247 156 6 62 297 37 274 5.53e-26 105
Msa0077630 MtrunA17_Chr8g0336841 54.217 83 38 0 288 370 9 91 1.88e-25 98.6
Msa0077630 MtrunA17_Chr1g0194321 27.536 345 193 14 59 370 12 332 2.03e-25 105
Msa0077630 MtrunA17_Chr4g0075471 42.727 110 59 2 228 336 32 138 2.11e-25 100
Msa0077630 MtrunA17_Chr5g0394071 35.119 168 100 2 182 349 4 162 4.17e-25 100
Msa0077630 MtrunA17_Chr1g0161101 39.535 172 92 3 160 330 341 501 5.16e-25 105
Msa0077630 MtrunA17_Chr4g0068891 28.302 318 195 12 67 369 20 319 1.12e-24 102
Msa0077630 MtrunA17_Chr3g0105281 26.718 262 163 8 67 315 34 279 2.02e-24 102
Msa0077630 MtrunA17_Chr8g0358941 27.687 307 183 10 89 370 41 333 8.81e-24 100
Msa0077630 MtrunA17_Chr8g0348951 29.010 293 180 10 66 342 4 284 9.83e-24 100
Msa0077630 MtrunA17_Chr5g0420881 30.822 146 97 2 226 370 2 144 1.57e-23 95.1
Msa0077630 MtrunA17_Chr7g0247741 30.968 310 162 14 59 343 3 285 2.83e-23 99.0
Msa0077630 MtrunA17_Chr6g0486831 26.398 322 198 10 63 356 16 326 3.66e-23 99.0
Msa0077630 MtrunA17_Chr4g0037611 42.149 121 69 1 200 319 11 131 1.38e-22 93.6
Msa0077630 MtrunA17_Chr7g0233661 39.316 117 71 0 205 321 1 117 1.77e-22 92.8
Msa0077630 MtrunA17_Chr4g0052251 27.393 303 181 10 67 349 29 312 1.78e-22 96.7
Msa0077630 MtrunA17_Chr4g0053251 25.382 327 193 11 66 354 7 320 6.16e-22 95.1
Msa0077630 MtrunA17_Chr3g0092581 34.375 160 97 5 193 349 4 158 4.05e-21 89.7
Msa0077630 MtrunA17_Chr2g0311611 48.571 70 29 1 226 288 2 71 9.70e-20 82.4
Msa0077630 MtrunA17_Chr1g0158011 25.926 270 186 9 106 370 1 261 1.00e-19 87.8
Msa0077630 MtrunA17_Chr1g0158021 25.957 235 161 9 53 280 33 261 3.47e-19 86.3
Msa0077630 MtrunA17_Chr8g0389941 26.761 284 176 9 89 344 51 330 6.85e-19 86.7
Msa0077630 MtrunA17_Chr7g0219991 40.187 107 62 2 181 286 249 354 1.98e-18 85.5
Msa0077630 MtrunA17_Chr4g0064771 32.121 165 101 5 185 344 31 189 2.26e-18 82.8
Msa0077630 MtrunA17_Chr4g0055911 26.994 326 203 14 61 365 3 314 2.94e-18 84.7
Msa0077630 MtrunA17_Chr7g0252371 57.143 84 35 1 183 265 1 84 7.70e-18 78.6
Msa0077630 MtrunA17_Chr2g0311821 50.526 95 41 2 71 163 11 101 8.96e-18 79.0
Msa0077630 MtrunA17_Chr2g0319521 33.028 109 73 0 180 288 16 124 1.95e-16 75.5
Msa0077630 MtrunA17_Chr2g0293931 33.793 145 86 5 183 317 10 154 2.04e-15 74.3
Msa0077630 MtrunA17_Chr8g0375581 36.471 85 53 1 202 285 2 86 2.20e-14 68.2
Msa0077630 MtrunA17_Chr4g0004071 24.262 305 203 10 67 357 9 299 1.05e-13 71.2
Msa0077630 MtrunA17_Chr7g0256741 24.415 299 201 10 59 345 3 288 1.55e-12 67.8
Msa0077630 MtrunA17_Chr8g0375591 40.741 81 39 2 61 136 40 116 1.87e-12 63.9
Msa0077630 MtrunA17_Chr1g0170641 27.132 129 88 2 40 167 22 145 1.12e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077630 AT1G06620.1 53.994 363 164 2 3 365 1 360 2.44e-142 409
Msa0077630 AT2G30840.1 54.545 363 159 4 11 370 3 362 2.68e-136 393
Msa0077630 AT5G59540.1 51.667 360 170 3 13 370 9 366 2.76e-136 393
Msa0077630 AT5G59530.1 52.355 361 165 5 13 370 8 364 5.52e-135 390
Msa0077630 AT2G30840.3 53.444 363 157 5 11 370 3 356 2.08e-130 378
Msa0077630 AT2G30830.1 51.389 360 167 5 13 370 5 358 2.92e-129 375
Msa0077630 AT1G06650.2 48.895 362 179 4 13 370 10 369 5.38e-128 372
Msa0077630 AT2G25450.1 48.753 361 178 5 12 370 4 359 3.42e-125 365
Msa0077630 AT1G04350.1 49.444 360 175 4 13 370 6 360 6.37e-125 364
Msa0077630 AT1G06640.1 48.387 372 185 5 3 370 1 369 6.85e-125 364
Msa0077630 AT5G43440.1 50.139 359 173 4 15 370 10 365 8.94e-124 361
Msa0077630 AT5G43450.1 49.858 353 172 3 14 365 9 357 1.72e-121 355
Msa0077630 AT1G04380.1 51.662 331 154 2 40 370 21 345 2.93e-121 354
Msa0077630 AT1G03410.2 48.333 360 180 5 14 370 5 361 3.00e-121 355
Msa0077630 AT1G03410.1 48.333 360 180 5 14 370 42 398 1.03e-120 355
Msa0077630 AT1G06645.1 46.361 371 186 6 6 370 16 379 1.19e-117 346
Msa0077630 AT3G61400.1 46.814 361 181 6 14 366 10 367 1.61e-117 345
Msa0077630 AT1G03400.1 46.927 358 178 4 14 370 5 351 3.52e-117 344
Msa0077630 AT1G03400.2 43.523 386 178 5 14 370 5 379 7.78e-111 329
Msa0077630 AT1G06620.2 53.333 285 130 2 3 287 1 282 1.99e-108 319
Msa0077630 AT2G30840.2 53.763 279 125 2 11 287 3 279 4.27e-104 309
Msa0077630 AT5G59540.2 49.640 278 136 3 13 288 9 284 1.90e-99 296
Msa0077630 AT1G06650.1 48.746 279 138 3 13 288 10 286 3.83e-97 291
Msa0077630 AT5G43450.2 50.355 282 135 3 14 294 9 286 1.72e-96 289
Msa0077630 AT1G06640.2 47.826 299 148 5 3 296 1 296 1.95e-95 288
Msa0077630 AT5G43440.2 49.822 281 135 4 15 292 10 287 6.51e-95 285
Msa0077630 AT1G06640.3 47.751 289 145 4 3 288 1 286 2.06e-94 283
Msa0077630 AT3G61400.2 47.163 282 139 5 14 288 10 288 3.19e-91 276
Msa0077630 AT1G04380.2 48.996 249 121 2 40 288 21 263 2.57e-85 260
Msa0077630 AT5G24530.1 35.159 347 202 6 32 368 5 338 3.35e-65 211
Msa0077630 AT4G10500.1 34.286 350 219 7 25 369 2 345 2.97e-62 203
Msa0077630 AT3G13610.1 33.819 343 210 8 28 365 26 356 4.63e-62 203
Msa0077630 AT4G10490.1 33.657 309 195 4 66 369 41 344 8.34e-62 202
Msa0077630 AT1G55290.1 34.670 349 200 10 28 365 25 356 3.45e-61 201
Msa0077630 AT3G12900.1 32.845 341 216 8 28 365 21 351 7.29e-56 187
Msa0077630 AT2G36690.2 34.356 326 203 5 26 345 18 338 7.58e-56 187
Msa0077630 AT2G36690.1 34.356 326 203 5 26 345 18 338 7.58e-56 187
Msa0077630 AT2G38240.1 30.423 355 225 9 21 365 4 346 1.42e-48 167
Msa0077630 AT1G17020.1 30.769 351 227 8 28 370 16 358 7.61e-48 166
Msa0077630 AT4G25300.1 29.462 353 226 11 29 370 16 356 1.11e-46 163
Msa0077630 AT4G16330.2 29.630 324 203 8 50 365 53 359 1.32e-45 160
Msa0077630 AT2G44800.1 32.343 303 188 6 59 353 44 337 2.47e-45 159
Msa0077630 AT1G78550.1 28.526 312 207 7 67 370 53 356 6.77e-45 158
Msa0077630 AT3G19000.1 32.278 316 187 7 47 343 14 321 6.78e-45 158
Msa0077630 AT5G05600.1 29.650 371 237 9 1 363 8 362 9.90e-45 158
Msa0077630 AT3G11180.1 31.792 346 215 9 29 363 56 391 9.97e-45 159
Msa0077630 AT4G25310.1 30.028 353 221 12 29 370 16 353 1.42e-44 157
Msa0077630 AT3G11180.2 31.339 351 220 9 29 368 56 396 1.88e-44 158
Msa0077630 AT3G60290.1 32.673 303 187 6 59 353 44 337 1.24e-43 155
Msa0077630 AT1G17010.1 28.571 350 234 9 29 370 17 358 2.14e-43 154
Msa0077630 AT3G51240.1 31.765 255 167 3 67 315 38 291 2.75e-43 154
Msa0077630 AT3G55970.1 29.830 352 223 9 17 358 12 349 5.61e-41 148
Msa0077630 AT1G77330.1 29.795 292 179 9 65 342 1 280 2.90e-39 142
Msa0077630 AT4G21200.1 32.646 291 168 8 67 349 42 312 6.91e-39 142
Msa0077630 AT3G19010.1 30.063 316 189 8 47 343 14 316 7.33e-39 142
Msa0077630 AT3G19010.4 30.063 316 189 8 47 343 14 316 7.33e-39 142
Msa0077630 AT5G12270.1 29.670 364 234 9 17 370 8 359 1.53e-38 141
Msa0077630 AT5G08640.2 28.107 338 207 10 29 349 6 324 1.74e-38 140
Msa0077630 AT5G08640.1 28.107 338 207 10 29 349 6 324 1.74e-38 140
Msa0077630 AT1G05010.1 33.452 281 161 12 66 335 3 268 2.77e-38 140
Msa0077630 AT3G21420.1 31.068 309 197 8 67 365 55 357 2.91e-38 140
Msa0077630 AT4G22880.1 27.941 340 224 9 29 353 7 340 6.76e-38 139
Msa0077630 AT4G22880.2 27.941 340 224 9 29 353 7 340 6.76e-38 139
Msa0077630 AT4G22880.3 27.941 340 224 9 29 353 7 340 6.76e-38 139
Msa0077630 AT4G25420.1 29.429 333 209 5 36 346 19 347 1.58e-37 139
Msa0077630 AT1G62380.1 32.584 267 156 11 60 316 2 254 2.72e-37 137
Msa0077630 AT5G07200.1 31.310 313 178 9 47 335 36 335 7.39e-37 137
Msa0077630 AT5G07480.1 29.766 299 188 7 67 351 44 334 2.20e-36 135
Msa0077630 AT1G12010.1 31.835 267 158 10 60 316 2 254 2.51e-36 134
Msa0077630 AT1G78550.2 27.402 281 189 6 98 370 5 278 2.90e-36 133
Msa0077630 AT1G15550.1 29.305 331 186 12 53 359 43 349 3.00e-36 135
Msa0077630 AT1G60980.1 31.024 332 195 10 47 354 35 356 3.59e-36 135
Msa0077630 AT3G19000.2 29.885 261 159 6 47 288 14 269 1.10e-34 129
Msa0077630 AT5G20400.1 26.957 345 225 8 20 355 7 333 7.23e-34 129
Msa0077630 AT5G63590.1 29.766 299 186 9 63 349 10 296 2.50e-33 126
Msa0077630 AT5G63600.1 29.063 320 193 11 49 352 15 316 4.19e-33 126
Msa0077630 AT3G19010.3 30.132 302 177 10 47 343 14 286 5.60e-33 125
Msa0077630 AT3G51240.2 33.696 184 116 2 138 315 24 207 1.44e-32 123
Msa0077630 AT1G50960.1 30.483 269 183 4 62 328 35 301 4.39e-32 123
Msa0077630 AT1G80330.1 31.003 329 177 13 66 367 48 353 6.70e-32 123
Msa0077630 AT4G16330.1 30.275 218 141 4 152 365 43 253 6.90e-32 121
Msa0077630 AT5G63600.2 28.972 321 193 12 49 352 15 317 8.65e-32 122
Msa0077630 AT5G05600.2 29.054 296 189 8 1 288 8 290 9.21e-32 121
Msa0077630 AT1G30040.1 29.043 303 169 10 66 346 30 308 3.95e-31 121
Msa0077630 AT4G25420.2 29.286 280 175 4 36 293 19 297 4.41e-31 120
Msa0077630 AT5G51810.1 29.630 297 184 5 64 346 60 345 4.83e-31 121
Msa0077630 AT4G25300.2 30.242 248 148 5 145 370 18 262 2.24e-30 117
Msa0077630 AT2G19590.1 30.545 275 160 12 53 316 3 257 2.25e-30 118
Msa0077630 AT4G25310.2 26.989 352 205 13 29 370 16 325 4.90e-30 117
Msa0077630 AT5G20550.1 25.697 323 228 7 44 358 22 340 6.74e-30 118
Msa0077630 AT3G55970.2 29.682 283 178 8 17 289 12 283 1.07e-29 116
Msa0077630 AT1G49390.1 25.648 347 226 11 20 354 7 333 8.30e-29 115
Msa0077630 AT4G21690.1 29.794 339 200 14 49 369 30 348 1.14e-28 114
Msa0077630 AT5G63595.1 29.210 291 143 12 41 311 2 249 1.97e-28 112
Msa0077630 AT1G78440.1 28.086 324 187 12 63 362 13 314 4.13e-28 112
Msa0077630 AT1G44090.1 27.987 318 205 7 67 368 63 372 2.58e-27 111
Msa0077630 AT3G19010.2 27.273 264 163 7 47 291 14 267 9.10e-27 108
Msa0077630 AT5G51810.2 30.165 242 147 4 64 291 60 293 4.68e-26 106
Msa0077630 AT1G80340.1 40.000 145 80 3 226 369 208 346 1.52e-25 105
Msa0077630 AT5G54000.2 26.174 298 208 7 64 355 43 334 2.56e-25 105
Msa0077630 AT1G14120.2 28.522 291 171 12 67 343 8 275 4.69e-25 103
Msa0077630 AT1G14120.1 28.522 291 171 12 67 343 8 275 4.69e-25 103
Msa0077630 AT1G14120.3 28.522 291 171 12 67 343 8 275 4.69e-25 103
Msa0077630 AT2G19590.2 31.746 252 147 11 78 316 3 242 6.70e-25 103
Msa0077630 AT1G14130.1 26.282 312 195 12 67 365 9 298 1.14e-24 102
Msa0077630 AT4G23340.1 30.519 308 182 12 59 351 2 292 1.60e-24 102
Msa0077630 AT1G30040.2 28.571 245 132 9 66 288 30 253 9.12e-23 96.7
Msa0077630 AT5G63580.2 29.185 233 145 7 66 288 18 240 2.49e-22 95.1
Msa0077630 AT5G63580.1 29.694 229 141 7 66 284 18 236 3.89e-22 94.7
Msa0077630 AT5G58660.1 26.119 268 165 7 69 305 26 291 4.67e-22 96.3
Msa0077630 AT5G07480.2 28.879 232 143 7 134 351 2 225 5.88e-22 94.0
Msa0077630 AT5G43935.1 25.574 305 183 9 67 359 19 291 6.33e-22 95.1
Msa0077630 AT1G47990.1 28.438 320 195 12 67 369 15 317 3.67e-21 93.2
Msa0077630 AT2G34555.1 26.948 308 189 9 67 357 27 315 4.08e-21 93.6
Msa0077630 AT3G47190.1 24.126 286 180 8 53 315 14 285 8.89e-21 92.4
Msa0077630 AT1G49390.2 24.906 265 176 10 102 354 1 254 2.32e-20 90.1
Msa0077630 AT5G54000.1 25.000 260 183 7 102 355 1 254 4.66e-19 86.3
Msa0077630 AT3G49620.1 24.843 318 206 8 40 332 13 322 2.94e-18 85.5
Msa0077630 AT1G02400.1 28.000 325 186 14 61 360 18 319 6.30e-18 84.3
Msa0077630 AT5G58660.2 25.498 251 154 7 69 288 26 274 8.75e-18 83.2
Msa0077630 AT3G50210.4 25.769 260 173 5 83 322 32 291 1.90e-17 82.8
Msa0077630 AT3G50210.1 25.769 260 173 5 83 322 32 291 1.90e-17 82.8
Msa0077630 AT3G50210.3 25.769 260 173 5 83 322 32 291 1.90e-17 82.8
Msa0077630 AT4G23340.2 34.483 145 88 4 211 351 33 174 8.59e-17 78.6
Msa0077630 AT3G46500.5 28.094 299 179 11 66 342 16 300 1.89e-16 79.7
Msa0077630 AT2G06960.1 36.232 138 71 4 220 357 25 145 2.08e-16 75.9
Msa0077630 AT1G52820.1 30.270 185 123 4 186 368 134 314 5.13e-16 78.6
Msa0077630 AT3G49630.3 24.915 293 202 6 57 332 2 293 4.58e-15 75.9
Msa0077630 AT3G49630.1 25.188 266 182 5 83 332 33 297 9.04e-15 75.1
Msa0077630 AT3G46500.7 27.308 260 157 9 66 303 16 265 6.81e-14 72.0
Msa0077630 AT4G16765.3 31.214 173 104 6 180 342 60 227 1.50e-13 70.1
Msa0077630 AT4G16765.6 30.387 181 113 6 180 349 60 238 2.99e-13 69.3
Msa0077630 AT4G16765.1 30.387 181 113 6 180 349 60 238 2.99e-13 69.3
Msa0077630 AT4G16765.2 30.387 181 113 6 180 349 60 238 2.99e-13 69.3
Msa0077630 AT3G50210.2 29.814 161 102 5 169 322 53 209 2.41e-12 66.6
Msa0077630 AT4G16765.5 35.000 120 69 4 237 349 75 192 2.49e-12 65.9
Msa0077630 AT4G03070.1 24.233 326 213 11 62 368 9 319 1.53e-11 65.1
Msa0077630 AT3G49630.2 29.341 167 110 5 169 332 63 224 3.03e-11 63.5
Msa0077630 AT3G46500.4 30.899 178 96 7 173 342 6 164 5.72e-11 61.6

Find 109 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATAATAATTCCTTTAT+TGG 0.101087 1_2:+54590435 None:intergenic
ACTCTTCCTTGCACCCTTTC+AGG 0.130980 1_2:-54590335 Msa0077630:CDS
CATACTTGCGGTATTTCTTC+TGG 0.229972 1_2:+54591167 None:intergenic
TTCTTTGGTGCACTTCTCTT+TGG 0.231602 1_2:-54590093 Msa0077630:three_prime_UTR
AGAGATTTGGCCTTAGATTA+TGG 0.266250 1_2:-54590877 Msa0077630:CDS
CCCATAGTTAATTCGGGTTC+AGG 0.275729 1_2:+54590820 None:intergenic
TAATCAAAGTTCAAATTATA+AGG 0.275842 1_2:+54590063 None:intergenic
AGAAGTTCCCATAGTTAATT+CGG 0.282269 1_2:+54590813 None:intergenic
CCCTGAACCCGAATTAACTA+TGG 0.283757 1_2:-54590821 Msa0077630:CDS
TCAAAGAAAGTAAGAGCTTT+AGG 0.288431 1_2:-54590955 Msa0077630:CDS
ATCGGAGATCAAGTTCAAAT+TGG 0.289399 1_2:+54591535 None:intergenic
GAGCTATTCTCAGAAGCTTT+AGG 0.296118 1_2:-54590919 Msa0077630:CDS
AAGAAAATCCACCAATCTAT+AGG 0.298151 1_2:-54590413 Msa0077630:CDS
TGGTATTCCGGTTAGTGTTT+TGG 0.298579 1_2:-54591369 Msa0077630:CDS
CTTTCTCATCATGGAGTTAG+AGG 0.301119 1_2:-54591690 Msa0077630:exon
TCCTTCTTACCTTAGAGATT+TGG 0.304222 1_2:-54590890 Msa0077630:CDS
TGGCAGCAGGGTCCGTAAAA+AGG 0.305500 1_2:+54591237 None:intergenic
AAAGTTCGATATTTCTCTAA+TGG 0.338662 1_2:-54591263 Msa0077630:CDS
GAGAAATTGTCCATAATCTA+AGG 0.338851 1_2:+54590867 None:intergenic
TCTTCTGGATTGGGAGGATC+GGG 0.344839 1_2:+54591182 None:intergenic
TTGTGAATTAAGAATTAGTA+TGG 0.350168 1_2:-54590312 Msa0077630:exon
TGTTCTATCATATGTGGAAT+TGG 0.351395 1_2:+54591655 None:intergenic
TGCGGTATTTCTTCTGGATT+GGG 0.351699 1_2:+54591173 None:intergenic
AGTGATTAATCATGGTATTC+CGG 0.365484 1_2:-54591381 Msa0077630:CDS
TTGCGGTATTTCTTCTGGAT+TGG 0.368792 1_2:+54591172 None:intergenic
TGTTGTGGTGTTGTTGGACT+TGG 0.377939 1_2:-54590277 Msa0077630:three_prime_UTR
CAAGGTCCTTGGTCCAATAA+AGG 0.378696 1_2:-54590448 Msa0077630:CDS
AATCTAAGGCCAAATCTCTA+AGG 0.387283 1_2:+54590881 None:intergenic
ATATCTTGAAGGTCTATGAT+AGG 0.390808 1_2:+54591479 None:intergenic
TTCTTCTGGATTGGGAGGAT+CGG 0.396249 1_2:+54591181 None:intergenic
GAAGTTCCCATAGTTAATTC+GGG 0.398350 1_2:+54590814 None:intergenic
AAGTTCTTCATCAGAATCAA+TGG 0.399345 1_2:-54590732 Msa0077630:CDS
ATCAATTGTTGTGGTGTTGT+TGG 0.403298 1_2:-54590283 Msa0077630:three_prime_UTR
TTTCTTCTACTTTCTCATCA+TGG 0.403695 1_2:-54591699 Msa0077630:exon
ATCTCATCCAAAACACTAAC+CGG 0.405079 1_2:+54591362 None:intergenic
AGAAAATCCACCAATCTATA+GGG 0.416314 1_2:-54590412 Msa0077630:CDS
TTACGGACCCTGCTGCCAAC+TGG 0.424630 1_2:-54591232 Msa0077630:CDS
AATTGTCATGAAATCAATAT+CGG 0.432971 1_2:+54590783 None:intergenic
TACTACTGTGAAAGAAGTCT+TGG 0.435724 1_2:-54590388 Msa0077630:CDS
GATTAGTGTTTATATCTTGA+AGG 0.437519 1_2:+54591468 None:intergenic
TCTTAATTCACAACCTGAAA+GGG 0.442503 1_2:+54590322 None:intergenic
GAGTCCCTCCAGTTGGCAGC+AGG 0.447236 1_2:+54591224 None:intergenic
AGAATAGCTCAAAGATTGTC+AGG 0.456408 1_2:+54590932 None:intergenic
AAGAAATACCGCAAGTATGC+AGG 0.456431 1_2:-54591163 Msa0077630:intron
GAATCAAAAGCCGGCGTGAA+AGG 0.460942 1_2:-54591611 Msa0077630:CDS
AAGCTAGCTATAGAAACTCT+AGG 0.464463 1_2:+54590498 None:intergenic
CCATAGTTAATTCGGGTTCA+GGG 0.464838 1_2:+54590821 None:intergenic
ACAGTAGTATCCCTATAGAT+TGG 0.466253 1_2:+54590402 None:intergenic
GTGAAAGGCCTCTTAGAATC+TGG 0.477165 1_2:-54591596 Msa0077630:CDS
GAACTTGAAGACCACCAATC+TGG 0.479431 1_2:+54590749 None:intergenic
TTCTAAGAGGCCTTTCACGC+CGG 0.481934 1_2:+54591601 None:intergenic
CTCTAAGGTAAGAAGGATCA+AGG 0.482272 1_2:+54590896 None:intergenic
CTTTATTGGACCAAGGACCT+TGG 0.485130 1_2:+54590449 None:intergenic
CAAGGAAACCATTCTATACA+AGG 0.487279 1_2:-54591298 Msa0077630:CDS
TCGGAGATCAAGTTCAAATT+GGG 0.487470 1_2:+54591536 None:intergenic
TTCTTAATTCACAACCTGAA+AGG 0.489670 1_2:+54590321 None:intergenic
GCCAAATCTCTAAGGTAAGA+AGG 0.493665 1_2:+54590889 None:intergenic
GAAGATTCGAAGTGCATGTA+AGG 0.497098 1_2:-54591420 Msa0077630:CDS
AGTTCTTCATCAGAATCAAT+GGG 0.501988 1_2:-54590731 Msa0077630:CDS
GAGGTTTCATCCAAGGTCCT+TGG 0.508636 1_2:-54590459 Msa0077630:CDS
TATGATAGGGACACTGAACT+TGG 0.510446 1_2:+54591493 None:intergenic
TATCTTGAAGGTCTATGATA+GGG 0.518400 1_2:+54591480 None:intergenic
TGTTCACAAGTGTTTATCAC+CGG 0.530213 1_2:-54590542 Msa0077630:CDS
GTTGATGTTCCTCCTCTGCA+TGG 0.531261 1_2:-54590709 Msa0077630:CDS
TACATATTCCAGATTCTAAG+AGG 0.531431 1_2:+54591588 None:intergenic
ATTCTTCTACAAGACCAGAT+TGG 0.532764 1_2:-54590763 Msa0077630:CDS
AAACATTGGTGATCTTCTGC+AGG 0.532811 1_2:-54590674 Msa0077630:intron
TTCCACTGTTCTATCATATG+TGG 0.534025 1_2:+54591649 None:intergenic
AGTCCCTCCAGTTGGCAGCA+GGG 0.536596 1_2:+54591225 None:intergenic
TAATCCATGTTTACATGTTG+AGG 0.536783 1_2:-54591450 Msa0077630:CDS
AGATGCTTCACTTTCATGAT+CGG 0.537892 1_2:+54591517 None:intergenic
TCGAAGTGCATGTAAGGAGT+GGG 0.538796 1_2:-54591414 Msa0077630:CDS
AATTCGGGTTCAGGGCATGC+AGG 0.539005 1_2:+54590829 None:intergenic
GCCTTTGAAGAATCAAAAGC+CGG 0.543063 1_2:-54591620 Msa0077630:CDS
ACTACTGTGAAAGAAGTCTT+GGG 0.544052 1_2:-54590387 Msa0077630:CDS
CTTCTTTGCAAACTCAGTAG+AGG 0.552479 1_2:-54590478 Msa0077630:CDS
CTTCTGGATTGGGAGGATCG+GGG 0.565105 1_2:+54591183 None:intergenic
GCAAGGAAGAGTTCCCATCA+AGG 0.565323 1_2:+54590346 None:intergenic
AGCTAGCTATAGAAACTCTA+GGG 0.565764 1_2:+54590499 None:intergenic
CATCTTGTTCATGAAACCTA+CGG 0.566748 1_2:+54591327 None:intergenic
CTCAGTAGAGGTTTCATCCA+AGG 0.567334 1_2:-54590466 Msa0077630:CDS
CTTCTACAAGACCAGATTGG+TGG 0.574735 1_2:-54590760 Msa0077630:CDS
ATAATTCCTTTATTGGACCA+AGG 0.587453 1_2:+54590442 None:intergenic
CGGACCCTGCTGCCAACTGG+AGG 0.587707 1_2:-54591229 Msa0077630:CDS
ATGAACAAGATGCTGATGCA+AGG 0.589480 1_2:-54591316 Msa0077630:CDS
TCACAACCTGAAAGGGTGCA+AGG 0.591043 1_2:+54590329 None:intergenic
GGATCTCTTGTTGTAAACAT+TGG 0.594751 1_2:-54590688 Msa0077630:CDS
ATGGAGTTAGAGGCAAGTAA+AGG 0.595590 1_2:-54591680 Msa0077630:CDS
TTCGAAGTGCATGTAAGGAG+TGG 0.595798 1_2:-54591415 Msa0077630:CDS
CCTGAACCCGAATTAACTAT+GGG 0.596387 1_2:-54590820 Msa0077630:CDS
CTATATGCTTCGATAAAACC+CGG 0.600515 1_2:+54590523 None:intergenic
GTAGTATCCCTATAGATTGG+TGG 0.600698 1_2:+54590405 None:intergenic
GGTATTTCTTCTGGATTGGG+AGG 0.605051 1_2:+54591176 None:intergenic
TTGGGAGAATGAAACATGCG+TGG 0.610879 1_2:+54591554 None:intergenic
TCATATTAAAAGTGTACCTG+TGG 0.612615 1_2:-54590137 Msa0077630:three_prime_UTR
TGAAAGTGAGTCCCTCCAGT+TGG 0.622368 1_2:+54591217 None:intergenic
GGACCCTGCTGCCAACTGGA+GGG 0.624510 1_2:-54591228 Msa0077630:CDS
AGTACCTCAACATGTAAACA+TGG 0.631590 1_2:+54591446 None:intergenic
AGATGATTAGTGGAATCCGT+AGG 0.632212 1_2:-54591343 Msa0077630:CDS
TAACATTACCTGCATACTTG+CGG 0.634719 1_2:+54591155 None:intergenic
GTTCACAAGTGTTTATCACC+GGG 0.640346 1_2:-54590541 Msa0077630:CDS
CGAAGTGCATGTAAGGAGTG+GGG 0.653285 1_2:-54591413 Msa0077630:CDS
TGGGAGAATGAAACATGCGT+GGG 0.654406 1_2:+54591555 None:intergenic
AAGGAAACCATTCTATACAA+GGG 0.666588 1_2:-54591297 Msa0077630:CDS
TGGAGCAGTATCAATTGTTG+TGG 0.679090 1_2:-54590292 Msa0077630:three_prime_UTR
ACAAGAGATCCATGCAGAGG+AGG 0.681103 1_2:+54590700 None:intergenic
AAGTTATTAAATGTAACCAC+AGG 0.683519 1_2:+54590121 None:intergenic
ACAACAAGAGATCCATGCAG+AGG 0.698408 1_2:+54590697 None:intergenic
TTCCACATATGATAGAACAG+TGG 0.718159 1_2:-54591651 Msa0077630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTAGTTTTATATCTTT+TGG - chr1_2:54590637-54590656 Msa0077630:intron 15.0%
!!! TTAATAACTTTCATTTTCTT+TGG - chr1_2:54591668-54591687 Msa0077630:CDS 15.0%
!! TAATCAAAGTTCAAATTATA+AGG + chr1_2:54591716-54591735 None:intergenic 15.0%
!!! AATGTTAGTTTTATATCTTT+TGG - chr1_2:54590637-54590656 Msa0077630:intron 15.0%
!!! TTAATAACTTTCATTTTCTT+TGG - chr1_2:54591668-54591687 Msa0077630:CDS 15.0%
!! TAATCAAAGTTCAAATTATA+AGG + chr1_2:54591716-54591735 None:intergenic 15.0%
!!! TTTTTTCAAGTGATTAATCA+TGG - chr1_2:54590387-54590406 Msa0077630:CDS 20.0%
!!! TAGTTTTATATCTTTTGGAT+CGG - chr1_2:54590642-54590661 Msa0077630:intron 20.0%
!! AATTGTCATGAAATCAATAT+CGG + chr1_2:54590996-54591015 None:intergenic 20.0%
!! TCTGATAATAATTCCTTTAT+TGG + chr1_2:54591344-54591363 None:intergenic 20.0%
!! TTGTGAATTAAGAATTAGTA+TGG - chr1_2:54591464-54591483 Msa0077630:CDS 20.0%
!!! TTTAGTCTTGCATTTTATTA+TGG - chr1_2:54591523-54591542 Msa0077630:CDS 20.0%
!!! TTTTTTCAAGTGATTAATCA+TGG - chr1_2:54590387-54590406 Msa0077630:CDS 20.0%
!!! TAGTTTTATATCTTTTGGAT+CGG - chr1_2:54590642-54590661 Msa0077630:intron 20.0%
!! AATTGTCATGAAATCAATAT+CGG + chr1_2:54590996-54591015 None:intergenic 20.0%
!! TCTGATAATAATTCCTTTAT+TGG + chr1_2:54591344-54591363 None:intergenic 20.0%
!! TTGTGAATTAAGAATTAGTA+TGG - chr1_2:54591464-54591483 Msa0077630:CDS 20.0%
!!! TTTAGTCTTGCATTTTATTA+TGG - chr1_2:54591523-54591542 Msa0077630:CDS 20.0%
! GATTAGTGTTTATATCTTGA+AGG + chr1_2:54590311-54590330 None:intergenic 25.0%
! AAAGTTCGATATTTCTCTAA+TGG - chr1_2:54590513-54590532 Msa0077630:CDS 25.0%
!!! AGTTTTATATCTTTTGGATC+GGG - chr1_2:54590643-54590662 Msa0077630:intron 25.0%
! TTGATGAGATGATTATGTAT+TGG - chr1_2:54590776-54590795 Msa0077630:CDS 25.0%
!!! TTGGGACATTATTTTACAAA+AGG - chr1_2:54591407-54591426 Msa0077630:CDS 25.0%
!! ACACTTTTAATATGAAGTGT+TGG + chr1_2:54591634-54591653 None:intergenic 25.0%
! AAGTTATTAAATGTAACCAC+AGG + chr1_2:54591658-54591677 None:intergenic 25.0%
! GATTAGTGTTTATATCTTGA+AGG + chr1_2:54590311-54590330 None:intergenic 25.0%
! AAAGTTCGATATTTCTCTAA+TGG - chr1_2:54590513-54590532 Msa0077630:CDS 25.0%
!!! AGTTTTATATCTTTTGGATC+GGG - chr1_2:54590643-54590662 Msa0077630:intron 25.0%
! TTGATGAGATGATTATGTAT+TGG - chr1_2:54590776-54590795 Msa0077630:CDS 25.0%
!!! TTGGGACATTATTTTACAAA+AGG - chr1_2:54591407-54591426 Msa0077630:CDS 25.0%
!! ACACTTTTAATATGAAGTGT+TGG + chr1_2:54591634-54591653 None:intergenic 25.0%
! AAGTTATTAAATGTAACCAC+AGG + chr1_2:54591658-54591677 None:intergenic 25.0%
TTTCTTCTACTTTCTCATCA+TGG - chr1_2:54590077-54590096 Msa0077630:three_prime_UTR 30.0%
TGTTCTATCATATGTGGAAT+TGG + chr1_2:54590124-54590143 None:intergenic 30.0%
TACATATTCCAGATTCTAAG+AGG + chr1_2:54590191-54590210 None:intergenic 30.0%
TATCTTGAAGGTCTATGATA+GGG + chr1_2:54590299-54590318 None:intergenic 30.0%
ATATCTTGAAGGTCTATGAT+AGG + chr1_2:54590300-54590319 None:intergenic 30.0%
TAATCCATGTTTACATGTTG+AGG - chr1_2:54590326-54590345 Msa0077630:exon 30.0%
AGTGATTAATCATGGTATTC+CGG - chr1_2:54590395-54590414 Msa0077630:CDS 30.0%
AAGGAAACCATTCTATACAA+GGG - chr1_2:54590479-54590498 Msa0077630:CDS 30.0%
! CTTTTATCCCTTGTATAGAA+TGG + chr1_2:54590489-54590508 None:intergenic 30.0%
TAATCATCTCATCAAAGACA+AGG + chr1_2:54590771-54590790 None:intergenic 30.0%
TCAAAGAAAGTAAGAGCTTT+AGG - chr1_2:54590821-54590840 Msa0077630:CDS 30.0%
GAGAAATTGTCCATAATCTA+AGG + chr1_2:54590912-54590931 None:intergenic 30.0%
AGAAGTTCCCATAGTTAATT+CGG + chr1_2:54590966-54590985 None:intergenic 30.0%
AAGTTCTTCATCAGAATCAA+TGG - chr1_2:54591044-54591063 Msa0077630:intron 30.0%
AGTTCTTCATCAGAATCAAT+GGG - chr1_2:54591045-54591064 Msa0077630:intron 30.0%
ATAATTCCTTTATTGGACCA+AGG + chr1_2:54591337-54591356 None:intergenic 30.0%
AAGAAAATCCACCAATCTAT+AGG - chr1_2:54591363-54591382 Msa0077630:CDS 30.0%
AGAAAATCCACCAATCTATA+GGG - chr1_2:54591364-54591383 Msa0077630:CDS 30.0%
! TATTTTACAAAAGGCCTTGA+TGG - chr1_2:54591416-54591435 Msa0077630:CDS 30.0%
! ATTTTACAAAAGGCCTTGAT+GGG - chr1_2:54591417-54591436 Msa0077630:CDS 30.0%
TCTTAATTCACAACCTGAAA+GGG + chr1_2:54591457-54591476 None:intergenic 30.0%
TTCTTAATTCACAACCTGAA+AGG + chr1_2:54591458-54591477 None:intergenic 30.0%
! TCATATTAAAAGTGTACCTG+TGG - chr1_2:54591639-54591658 Msa0077630:CDS 30.0%
TTTCTTCTACTTTCTCATCA+TGG - chr1_2:54590077-54590096 Msa0077630:three_prime_UTR 30.0%
TGTTCTATCATATGTGGAAT+TGG + chr1_2:54590124-54590143 None:intergenic 30.0%
TACATATTCCAGATTCTAAG+AGG + chr1_2:54590191-54590210 None:intergenic 30.0%
TATCTTGAAGGTCTATGATA+GGG + chr1_2:54590299-54590318 None:intergenic 30.0%
ATATCTTGAAGGTCTATGAT+AGG + chr1_2:54590300-54590319 None:intergenic 30.0%
TAATCCATGTTTACATGTTG+AGG - chr1_2:54590326-54590345 Msa0077630:exon 30.0%
AGTGATTAATCATGGTATTC+CGG - chr1_2:54590395-54590414 Msa0077630:CDS 30.0%
AAGGAAACCATTCTATACAA+GGG - chr1_2:54590479-54590498 Msa0077630:CDS 30.0%
! CTTTTATCCCTTGTATAGAA+TGG + chr1_2:54590489-54590508 None:intergenic 30.0%
TAATCATCTCATCAAAGACA+AGG + chr1_2:54590771-54590790 None:intergenic 30.0%
TCAAAGAAAGTAAGAGCTTT+AGG - chr1_2:54590821-54590840 Msa0077630:CDS 30.0%
GAGAAATTGTCCATAATCTA+AGG + chr1_2:54590912-54590931 None:intergenic 30.0%
AGAAGTTCCCATAGTTAATT+CGG + chr1_2:54590966-54590985 None:intergenic 30.0%
AAGTTCTTCATCAGAATCAA+TGG - chr1_2:54591044-54591063 Msa0077630:intron 30.0%
AGTTCTTCATCAGAATCAAT+GGG - chr1_2:54591045-54591064 Msa0077630:intron 30.0%
ATAATTCCTTTATTGGACCA+AGG + chr1_2:54591337-54591356 None:intergenic 30.0%
AAGAAAATCCACCAATCTAT+AGG - chr1_2:54591363-54591382 Msa0077630:CDS 30.0%
AGAAAATCCACCAATCTATA+GGG - chr1_2:54591364-54591383 Msa0077630:CDS 30.0%
! TATTTTACAAAAGGCCTTGA+TGG - chr1_2:54591416-54591435 Msa0077630:CDS 30.0%
! ATTTTACAAAAGGCCTTGAT+GGG - chr1_2:54591417-54591436 Msa0077630:CDS 30.0%
TCTTAATTCACAACCTGAAA+GGG + chr1_2:54591457-54591476 None:intergenic 30.0%
TTCTTAATTCACAACCTGAA+AGG + chr1_2:54591458-54591477 None:intergenic 30.0%
! TCATATTAAAAGTGTACCTG+TGG - chr1_2:54591639-54591658 Msa0077630:CDS 30.0%
TTCCACATATGATAGAACAG+TGG - chr1_2:54590125-54590144 Msa0077630:three_prime_UTR 35.0%
TTCCACTGTTCTATCATATG+TGG + chr1_2:54590130-54590149 None:intergenic 35.0%
TCGGAGATCAAGTTCAAATT+GGG + chr1_2:54590243-54590262 None:intergenic 35.0%
ATCGGAGATCAAGTTCAAAT+TGG + chr1_2:54590244-54590263 None:intergenic 35.0%
AGATGCTTCACTTTCATGAT+CGG + chr1_2:54590262-54590281 None:intergenic 35.0%
AGTACCTCAACATGTAAACA+TGG + chr1_2:54590333-54590352 None:intergenic 35.0%
ATCTCATCCAAAACACTAAC+CGG + chr1_2:54590417-54590436 None:intergenic 35.0%
!! GTTTTGGATGAGATGATTAG+TGG - chr1_2:54590423-54590442 Msa0077630:CDS 35.0%
CATCTTGTTCATGAAACCTA+CGG + chr1_2:54590452-54590471 None:intergenic 35.0%
CAAGGAAACCATTCTATACA+AGG - chr1_2:54590478-54590497 Msa0077630:CDS 35.0%
! CTCTAATGGTAGCCTTTTTA+CGG - chr1_2:54590527-54590546 Msa0077630:CDS 35.0%
TAACATTACCTGCATACTTG+CGG + chr1_2:54590624-54590643 None:intergenic 35.0%
AGAATAGCTCAAAGATTGTC+AGG + chr1_2:54590847-54590866 None:intergenic 35.0%
TCCTTCTTACCTTAGAGATT+TGG - chr1_2:54590886-54590905 Msa0077630:CDS 35.0%
! AATCTAAGGCCAAATCTCTA+AGG + chr1_2:54590898-54590917 None:intergenic 35.0%
!! AGAGATTTGGCCTTAGATTA+TGG - chr1_2:54590899-54590918 Msa0077630:CDS 35.0%
GAAGTTCCCATAGTTAATTC+GGG + chr1_2:54590965-54590984 None:intergenic 35.0%
ATTCTTCTACAAGACCAGAT+TGG - chr1_2:54591013-54591032 Msa0077630:intron 35.0%
! GGATCTCTTGTTGTAAACAT+TGG - chr1_2:54591088-54591107 Msa0077630:intron 35.0%
GATGTTAAGTGTAAACACGT+TGG - chr1_2:54591130-54591149 Msa0077630:intron 35.0%
TGTTCACAAGTGTTTATCAC+CGG - chr1_2:54591234-54591253 Msa0077630:CDS 35.0%
CTATATGCTTCGATAAAACC+CGG + chr1_2:54591256-54591275 None:intergenic 35.0%
AGCTAGCTATAGAAACTCTA+GGG + chr1_2:54591280-54591299 None:intergenic 35.0%
AAGCTAGCTATAGAAACTCT+AGG + chr1_2:54591281-54591300 None:intergenic 35.0%
ACAGTAGTATCCCTATAGAT+TGG + chr1_2:54591377-54591396 None:intergenic 35.0%
TACTACTGTGAAAGAAGTCT+TGG - chr1_2:54591388-54591407 Msa0077630:CDS 35.0%
ACTACTGTGAAAGAAGTCTT+GGG - chr1_2:54591389-54591408 Msa0077630:CDS 35.0%
!! ATCAATTGTTGTGGTGTTGT+TGG - chr1_2:54591493-54591512 Msa0077630:CDS 35.0%
TTCCACATATGATAGAACAG+TGG - chr1_2:54590125-54590144 Msa0077630:three_prime_UTR 35.0%
TTCCACTGTTCTATCATATG+TGG + chr1_2:54590130-54590149 None:intergenic 35.0%
TCGGAGATCAAGTTCAAATT+GGG + chr1_2:54590243-54590262 None:intergenic 35.0%
ATCGGAGATCAAGTTCAAAT+TGG + chr1_2:54590244-54590263 None:intergenic 35.0%
AGATGCTTCACTTTCATGAT+CGG + chr1_2:54590262-54590281 None:intergenic 35.0%
AGTACCTCAACATGTAAACA+TGG + chr1_2:54590333-54590352 None:intergenic 35.0%
ATCTCATCCAAAACACTAAC+CGG + chr1_2:54590417-54590436 None:intergenic 35.0%
!! GTTTTGGATGAGATGATTAG+TGG - chr1_2:54590423-54590442 Msa0077630:CDS 35.0%
CATCTTGTTCATGAAACCTA+CGG + chr1_2:54590452-54590471 None:intergenic 35.0%
CAAGGAAACCATTCTATACA+AGG - chr1_2:54590478-54590497 Msa0077630:CDS 35.0%
! CTCTAATGGTAGCCTTTTTA+CGG - chr1_2:54590527-54590546 Msa0077630:CDS 35.0%
TAACATTACCTGCATACTTG+CGG + chr1_2:54590624-54590643 None:intergenic 35.0%
AGAATAGCTCAAAGATTGTC+AGG + chr1_2:54590847-54590866 None:intergenic 35.0%
TCCTTCTTACCTTAGAGATT+TGG - chr1_2:54590886-54590905 Msa0077630:CDS 35.0%
! AATCTAAGGCCAAATCTCTA+AGG + chr1_2:54590898-54590917 None:intergenic 35.0%
!! AGAGATTTGGCCTTAGATTA+TGG - chr1_2:54590899-54590918 Msa0077630:CDS 35.0%
GAAGTTCCCATAGTTAATTC+GGG + chr1_2:54590965-54590984 None:intergenic 35.0%
ATTCTTCTACAAGACCAGAT+TGG - chr1_2:54591013-54591032 Msa0077630:intron 35.0%
! GGATCTCTTGTTGTAAACAT+TGG - chr1_2:54591088-54591107 Msa0077630:intron 35.0%
GATGTTAAGTGTAAACACGT+TGG - chr1_2:54591130-54591149 Msa0077630:intron 35.0%
TGTTCACAAGTGTTTATCAC+CGG - chr1_2:54591234-54591253 Msa0077630:CDS 35.0%
CTATATGCTTCGATAAAACC+CGG + chr1_2:54591256-54591275 None:intergenic 35.0%
AGCTAGCTATAGAAACTCTA+GGG + chr1_2:54591280-54591299 None:intergenic 35.0%
AAGCTAGCTATAGAAACTCT+AGG + chr1_2:54591281-54591300 None:intergenic 35.0%
ACAGTAGTATCCCTATAGAT+TGG + chr1_2:54591377-54591396 None:intergenic 35.0%
TACTACTGTGAAAGAAGTCT+TGG - chr1_2:54591388-54591407 Msa0077630:CDS 35.0%
ACTACTGTGAAAGAAGTCTT+GGG - chr1_2:54591389-54591408 Msa0077630:CDS 35.0%
!! ATCAATTGTTGTGGTGTTGT+TGG - chr1_2:54591493-54591512 Msa0077630:CDS 35.0%
CTTTCTCATCATGGAGTTAG+AGG - chr1_2:54590086-54590105 Msa0077630:three_prime_UTR 40.0%
ATGGAGTTAGAGGCAAGTAA+AGG - chr1_2:54590096-54590115 Msa0077630:three_prime_UTR 40.0%
! GCCTTTGAAGAATCAAAAGC+CGG - chr1_2:54590156-54590175 Msa0077630:three_prime_UTR 40.0%
TATGATAGGGACACTGAACT+TGG + chr1_2:54590286-54590305 None:intergenic 40.0%
GAAGATTCGAAGTGCATGTA+AGG - chr1_2:54590356-54590375 Msa0077630:CDS 40.0%
! TGGTATTCCGGTTAGTGTTT+TGG - chr1_2:54590407-54590426 Msa0077630:CDS 40.0%
AGATGATTAGTGGAATCCGT+AGG - chr1_2:54590433-54590452 Msa0077630:CDS 40.0%
ATGAACAAGATGCTGATGCA+AGG - chr1_2:54590460-54590479 Msa0077630:CDS 40.0%
TGCGGTATTTCTTCTGGATT+GGG + chr1_2:54590606-54590625 None:intergenic 40.0%
TTGCGGTATTTCTTCTGGAT+TGG + chr1_2:54590607-54590626 None:intergenic 40.0%
CATACTTGCGGTATTTCTTC+TGG + chr1_2:54590612-54590631 None:intergenic 40.0%
AAGAAATACCGCAAGTATGC+AGG - chr1_2:54590613-54590632 Msa0077630:intron 40.0%
GAGCTATTCTCAGAAGCTTT+AGG - chr1_2:54590857-54590876 Msa0077630:CDS 40.0%
!! CTCTAAGGTAAGAAGGATCA+AGG + chr1_2:54590883-54590902 None:intergenic 40.0%
!! GCCAAATCTCTAAGGTAAGA+AGG + chr1_2:54590890-54590909 None:intergenic 40.0%
! CCATAGTTAATTCGGGTTCA+GGG + chr1_2:54590958-54590977 None:intergenic 40.0%
CCTGAACCCGAATTAACTAT+GGG - chr1_2:54590956-54590975 Msa0077630:CDS 40.0%
! AAACATTGGTGATCTTCTGC+AGG - chr1_2:54591102-54591121 Msa0077630:intron 40.0%
GTTCACAAGTGTTTATCACC+GGG - chr1_2:54591235-54591254 Msa0077630:CDS 40.0%
!! CGGGTTTTATCGAAGCATAT+AGG - chr1_2:54591254-54591273 Msa0077630:CDS 40.0%
CTTCTTTGCAAACTCAGTAG+AGG - chr1_2:54591298-54591317 Msa0077630:CDS 40.0%
GTAGTATCCCTATAGATTGG+TGG + chr1_2:54591374-54591393 None:intergenic 40.0%
TGGAGCAGTATCAATTGTTG+TGG - chr1_2:54591484-54591503 Msa0077630:CDS 40.0%
! TTCTTTGGTGCACTTCTCTT+TGG - chr1_2:54591683-54591702 Msa0077630:CDS 40.0%
CTTTCTCATCATGGAGTTAG+AGG - chr1_2:54590086-54590105 Msa0077630:three_prime_UTR 40.0%
ATGGAGTTAGAGGCAAGTAA+AGG - chr1_2:54590096-54590115 Msa0077630:three_prime_UTR 40.0%
! GCCTTTGAAGAATCAAAAGC+CGG - chr1_2:54590156-54590175 Msa0077630:three_prime_UTR 40.0%
TATGATAGGGACACTGAACT+TGG + chr1_2:54590286-54590305 None:intergenic 40.0%
GAAGATTCGAAGTGCATGTA+AGG - chr1_2:54590356-54590375 Msa0077630:CDS 40.0%
! TGGTATTCCGGTTAGTGTTT+TGG - chr1_2:54590407-54590426 Msa0077630:CDS 40.0%
AGATGATTAGTGGAATCCGT+AGG - chr1_2:54590433-54590452 Msa0077630:CDS 40.0%
ATGAACAAGATGCTGATGCA+AGG - chr1_2:54590460-54590479 Msa0077630:CDS 40.0%
TGCGGTATTTCTTCTGGATT+GGG + chr1_2:54590606-54590625 None:intergenic 40.0%
TTGCGGTATTTCTTCTGGAT+TGG + chr1_2:54590607-54590626 None:intergenic 40.0%
CATACTTGCGGTATTTCTTC+TGG + chr1_2:54590612-54590631 None:intergenic 40.0%
AAGAAATACCGCAAGTATGC+AGG - chr1_2:54590613-54590632 Msa0077630:intron 40.0%
GAGCTATTCTCAGAAGCTTT+AGG - chr1_2:54590857-54590876 Msa0077630:CDS 40.0%
!! CTCTAAGGTAAGAAGGATCA+AGG + chr1_2:54590883-54590902 None:intergenic 40.0%
!! GCCAAATCTCTAAGGTAAGA+AGG + chr1_2:54590890-54590909 None:intergenic 40.0%
! CCATAGTTAATTCGGGTTCA+GGG + chr1_2:54590958-54590977 None:intergenic 40.0%
CCTGAACCCGAATTAACTAT+GGG - chr1_2:54590956-54590975 Msa0077630:CDS 40.0%
! AAACATTGGTGATCTTCTGC+AGG - chr1_2:54591102-54591121 Msa0077630:intron 40.0%
GTTCACAAGTGTTTATCACC+GGG - chr1_2:54591235-54591254 Msa0077630:CDS 40.0%
!! CGGGTTTTATCGAAGCATAT+AGG - chr1_2:54591254-54591273 Msa0077630:CDS 40.0%
CTTCTTTGCAAACTCAGTAG+AGG - chr1_2:54591298-54591317 Msa0077630:CDS 40.0%
GTAGTATCCCTATAGATTGG+TGG + chr1_2:54591374-54591393 None:intergenic 40.0%
TGGAGCAGTATCAATTGTTG+TGG - chr1_2:54591484-54591503 Msa0077630:CDS 40.0%
! TTCTTTGGTGCACTTCTCTT+TGG - chr1_2:54591683-54591702 Msa0077630:CDS 40.0%
!! GCCGGCTTTTGATTCTTCAA+AGG + chr1_2:54590160-54590179 None:intergenic 45.0%
GTGAAAGGCCTCTTAGAATC+TGG - chr1_2:54590180-54590199 Msa0077630:three_prime_UTR 45.0%
TGGGAGAATGAAACATGCGT+GGG + chr1_2:54590224-54590243 None:intergenic 45.0%
TTGGGAGAATGAAACATGCG+TGG + chr1_2:54590225-54590244 None:intergenic 45.0%
TTCGAAGTGCATGTAAGGAG+TGG - chr1_2:54590361-54590380 Msa0077630:CDS 45.0%
TCGAAGTGCATGTAAGGAGT+GGG - chr1_2:54590362-54590381 Msa0077630:CDS 45.0%
! TTCTTCTGGATTGGGAGGAT+CGG + chr1_2:54590598-54590617 None:intergenic 45.0%
! GGTATTTCTTCTGGATTGGG+AGG + chr1_2:54590603-54590622 None:intergenic 45.0%
CCCTGAACCCGAATTAACTA+TGG - chr1_2:54590955-54590974 Msa0077630:CDS 45.0%
! CCCATAGTTAATTCGGGTTC+AGG + chr1_2:54590959-54590978 None:intergenic 45.0%
CTTCTACAAGACCAGATTGG+TGG - chr1_2:54591016-54591035 Msa0077630:intron 45.0%
GAACTTGAAGACCACCAATC+TGG + chr1_2:54591030-54591049 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+AGG + chr1_2:54591082-54591101 None:intergenic 45.0%
CTCAGTAGAGGTTTCATCCA+AGG - chr1_2:54591310-54591329 Msa0077630:CDS 45.0%
CTTTATTGGACCAAGGACCT+TGG + chr1_2:54591330-54591349 None:intergenic 45.0%
CAAGGTCCTTGGTCCAATAA+AGG - chr1_2:54591328-54591347 Msa0077630:CDS 45.0%
!! TGTTGTGGTGTTGTTGGACT+TGG - chr1_2:54591499-54591518 Msa0077630:CDS 45.0%
!! GCCGGCTTTTGATTCTTCAA+AGG + chr1_2:54590160-54590179 None:intergenic 45.0%
GTGAAAGGCCTCTTAGAATC+TGG - chr1_2:54590180-54590199 Msa0077630:three_prime_UTR 45.0%
TGGGAGAATGAAACATGCGT+GGG + chr1_2:54590224-54590243 None:intergenic 45.0%
TTGGGAGAATGAAACATGCG+TGG + chr1_2:54590225-54590244 None:intergenic 45.0%
TTCGAAGTGCATGTAAGGAG+TGG - chr1_2:54590361-54590380 Msa0077630:CDS 45.0%
TCGAAGTGCATGTAAGGAGT+GGG - chr1_2:54590362-54590381 Msa0077630:CDS 45.0%
! TTCTTCTGGATTGGGAGGAT+CGG + chr1_2:54590598-54590617 None:intergenic 45.0%
! GGTATTTCTTCTGGATTGGG+AGG + chr1_2:54590603-54590622 None:intergenic 45.0%
CCCTGAACCCGAATTAACTA+TGG - chr1_2:54590955-54590974 Msa0077630:CDS 45.0%
! CCCATAGTTAATTCGGGTTC+AGG + chr1_2:54590959-54590978 None:intergenic 45.0%
CTTCTACAAGACCAGATTGG+TGG - chr1_2:54591016-54591035 Msa0077630:intron 45.0%
GAACTTGAAGACCACCAATC+TGG + chr1_2:54591030-54591049 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+AGG + chr1_2:54591082-54591101 None:intergenic 45.0%
CTCAGTAGAGGTTTCATCCA+AGG - chr1_2:54591310-54591329 Msa0077630:CDS 45.0%
CTTTATTGGACCAAGGACCT+TGG + chr1_2:54591330-54591349 None:intergenic 45.0%
CAAGGTCCTTGGTCCAATAA+AGG - chr1_2:54591328-54591347 Msa0077630:CDS 45.0%
!! TGTTGTGGTGTTGTTGGACT+TGG - chr1_2:54591499-54591518 Msa0077630:CDS 45.0%
GAATCAAAAGCCGGCGTGAA+AGG - chr1_2:54590165-54590184 Msa0077630:three_prime_UTR 50.0%
! TTCTAAGAGGCCTTTCACGC+CGG + chr1_2:54590178-54590197 None:intergenic 50.0%
CGAAGTGCATGTAAGGAGTG+GGG - chr1_2:54590363-54590382 Msa0077630:CDS 50.0%
TGAAAGTGAGTCCCTCCAGT+TGG + chr1_2:54590562-54590581 None:intergenic 50.0%
! TCTTCTGGATTGGGAGGATC+GGG + chr1_2:54590597-54590616 None:intergenic 50.0%
GTTGATGTTCCTCCTCTGCA+TGG - chr1_2:54591067-54591086 Msa0077630:intron 50.0%
ACAAGAGATCCATGCAGAGG+AGG + chr1_2:54591079-54591098 None:intergenic 50.0%
GAGGTTTCATCCAAGGTCCT+TGG - chr1_2:54591317-54591336 Msa0077630:CDS 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_2:54591433-54591452 None:intergenic 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_2:54591441-54591460 Msa0077630:CDS 50.0%
! TCACAACCTGAAAGGGTGCA+AGG + chr1_2:54591450-54591469 None:intergenic 50.0%
GAATCAAAAGCCGGCGTGAA+AGG - chr1_2:54590165-54590184 Msa0077630:three_prime_UTR 50.0%
! TTCTAAGAGGCCTTTCACGC+CGG + chr1_2:54590178-54590197 None:intergenic 50.0%
CGAAGTGCATGTAAGGAGTG+GGG - chr1_2:54590363-54590382 Msa0077630:CDS 50.0%
TGAAAGTGAGTCCCTCCAGT+TGG + chr1_2:54590562-54590581 None:intergenic 50.0%
! TCTTCTGGATTGGGAGGATC+GGG + chr1_2:54590597-54590616 None:intergenic 50.0%
GTTGATGTTCCTCCTCTGCA+TGG - chr1_2:54591067-54591086 Msa0077630:intron 50.0%
ACAAGAGATCCATGCAGAGG+AGG + chr1_2:54591079-54591098 None:intergenic 50.0%
GAGGTTTCATCCAAGGTCCT+TGG - chr1_2:54591317-54591336 Msa0077630:CDS 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_2:54591433-54591452 None:intergenic 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_2:54591441-54591460 Msa0077630:CDS 50.0%
! TCACAACCTGAAAGGGTGCA+AGG + chr1_2:54591450-54591469 None:intergenic 50.0%
TGGCAGCAGGGTCCGTAAAA+AGG + chr1_2:54590542-54590561 None:intergenic 55.0%
! CTTCTGGATTGGGAGGATCG+GGG + chr1_2:54590596-54590615 None:intergenic 55.0%
! AATTCGGGTTCAGGGCATGC+AGG + chr1_2:54590950-54590969 None:intergenic 55.0%
TGGCAGCAGGGTCCGTAAAA+AGG + chr1_2:54590542-54590561 None:intergenic 55.0%
! CTTCTGGATTGGGAGGATCG+GGG + chr1_2:54590596-54590615 None:intergenic 55.0%
! AATTCGGGTTCAGGGCATGC+AGG + chr1_2:54590950-54590969 None:intergenic 55.0%
TTACGGACCCTGCTGCCAAC+TGG - chr1_2:54590544-54590563 Msa0077630:CDS 60.0%
AGTCCCTCCAGTTGGCAGCA+GGG + chr1_2:54590554-54590573 None:intergenic 60.0%
TTACGGACCCTGCTGCCAAC+TGG - chr1_2:54590544-54590563 Msa0077630:CDS 60.0%
AGTCCCTCCAGTTGGCAGCA+GGG + chr1_2:54590554-54590573 None:intergenic 60.0%
GGACCCTGCTGCCAACTGGA+GGG - chr1_2:54590548-54590567 Msa0077630:CDS 65.0%
GAGTCCCTCCAGTTGGCAGC+AGG + chr1_2:54590555-54590574 None:intergenic 65.0%
GGACCCTGCTGCCAACTGGA+GGG - chr1_2:54590548-54590567 Msa0077630:CDS 65.0%
GAGTCCCTCCAGTTGGCAGC+AGG + chr1_2:54590555-54590574 None:intergenic 65.0%
CGGACCCTGCTGCCAACTGG+AGG - chr1_2:54590547-54590566 Msa0077630:CDS 70.0%
CGGACCCTGCTGCCAACTGG+AGG - chr1_2:54590547-54590566 Msa0077630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54590062 54591736 54590062 ID=Msa0077630;Name=Msa0077630
chr1_2 mRNA 54590062 54591736 54590062 ID=Msa0077630-mRNA-1;Parent=Msa0077630;Name=Msa0077630-mRNA-1;_AED=0.29;_eAED=0.29;_QI=34|1|1|1|1|1|3|267|370
chr1_2 exon 54590062 54590580 54590062 ID=Msa0077630-mRNA-1:exon:16972;Parent=Msa0077630-mRNA-1
chr1_2 exon 54590675 54590996 54590675 ID=Msa0077630-mRNA-1:exon:16971;Parent=Msa0077630-mRNA-1
chr1_2 exon 54591164 54591736 54591164 ID=Msa0077630-mRNA-1:exon:16970;Parent=Msa0077630-mRNA-1
chr1_2 five_prime_UTR 54591703 54591736 54591703 ID=Msa0077630-mRNA-1:five_prime_utr;Parent=Msa0077630-mRNA-1
chr1_2 CDS 54591164 54591702 54591164 ID=Msa0077630-mRNA-1:cds;Parent=Msa0077630-mRNA-1
chr1_2 CDS 54590675 54590996 54590675 ID=Msa0077630-mRNA-1:cds;Parent=Msa0077630-mRNA-1
chr1_2 CDS 54590329 54590580 54590329 ID=Msa0077630-mRNA-1:cds;Parent=Msa0077630-mRNA-1
chr1_2 three_prime_UTR 54590062 54590328 54590062 ID=Msa0077630-mRNA-1:three_prime_utr;Parent=Msa0077630-mRNA-1
Gene Sequence

>Msa0077630

ATGGAGTTAGAGGCAAGTAAAGGTTCCAATTCCACATATGATAGAACAGTGGAAGTGAAAGCCTTTGAAGAATCAAAAGCCGGCGTGAAAGGCCTCTTAGAATCTGGAATATGTACGACAAAGATCCCACGCATGTTTCATTCTCCCAATTTGAACTTGATCTCCGATCATGAAAGTGAAGCATCTTCCAAGTTCAGTGTCCCTATCATAGACCTTCAAGATATAAACACTAATCCATGTTTACATGTTGAGGTACTTGAGAAGATTCGAAGTGCATGTAAGGAGTGGGGATTTTTTCAAGTGATTAATCATGGTATTCCGGTTAGTGTTTTGGATGAGATGATTAGTGGAATCCGTAGGTTTCATGAACAAGATGCTGATGCAAGGAAACCATTCTATACAAGGGATAAAAGTAAGAAAGTTCGATATTTCTCTAATGGTAGCCTTTTTACGGACCCTGCTGCCAACTGGAGGGACTCACTTTCATTTTTTGTAAGCCCCGATCCTCCCAATCCAGAAGAAATACCGCAAGTATGCAGAGACATTGTGATTGAATATTCAAAGAAAGTAAGAGCTTTAGGCCTGACAATCTTTGAGCTATTCTCAGAAGCTTTAGGCCTTGATCCTTCTTACCTTAGAGATTTGGCCTTAGATTATGGACAATTTCTCTTGTGTCACTACTATCCTGCATGCCCTGAACCCGAATTAACTATGGGAACTTCTAAGCACACCGATATTGATTTCATGACAATTCTTCTACAAGACCAGATTGGTGGTCTTCAAGTTCTTCATCAGAATCAATGGGTTGATGTTCCTCCTCTGCATGGATCTCTTGTTGTAAACATTGGTGATCTTCTGCAGCTTGTAACAAATGACATGTTCACAAGTGTTTATCACCGGGTTTTATCGAAGCATATAGGCCCTAGAGTTTCTATAGCTAGCTTCTTTGCAAACTCAGTAGAGGTTTCATCCAAGGTCCTTGGTCCAATAAAGGAATTATTATCAGAAGAAAATCCACCAATCTATAGGGATACTACTGTGAAAGAAGTCTTGGGACATTATTTTACAAAAGGCCTTGATGGGAACTCTTCCTTGCACCCTTTCAGGTTGTGA
Protein sequence

>Msa0077630

MELEASKGSNSTYDRTVEVKAFEESKAGVKGLLESGICTTKIPRMFHSPNLNLISDHESEASSKFSVPIIDLQDINTNPCLHVEVLEKIRSACKEWGFFQVINHGIPVSVLDEMISGIRRFHEQDADARKPFYTRDKSKKVRYFSNGSLFTDPAANWRDSLSFFVSPDPPNPEEIPQVCRDIVIEYSKKVRALGLTIFELFSEALGLDPSYLRDLALDYGQFLLCHYYPACPEPELTMGTSKHTDIDFMTILLQDQIGGLQVLHQNQWVDVPPLHGSLVVNIGDLLQLVTNDMFTSVYHRVLSKHIGPRVSIASFFANSVEVSSKVLGPIKELLSEENPPIYRDTTVKEVLGHYFTKGLDGNSSLHPFRL*