AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0125690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125690 MtrunA17_Chr1g0187821 95.676 370 16 0 1 370 1 370 0.0 730
Msa0125690 MtrunA17_Chr1g0187811 83.333 378 55 4 1 370 116 493 0.0 655
Msa0125690 MtrunA17_Chr1g0187831 79.839 372 72 2 1 369 2 373 0.0 618
Msa0125690 MtrunA17_Chr7g0235951 62.973 370 130 3 4 370 8 373 1.81e-174 490
Msa0125690 MtrunA17_Chr8g0364471 61.008 377 136 4 1 370 1 373 1.12e-168 475
Msa0125690 MtrunA17_Chr4g0055591 62.291 358 126 3 15 370 11 361 1.17e-166 469
Msa0125690 MtrunA17_Chr8g0335411 63.014 365 128 3 9 370 13 373 2.71e-166 469
Msa0125690 MtrunA17_Chr7g0236011 63.710 372 126 4 2 370 8 373 3.37e-166 469
Msa0125690 MtrunA17_Chr7g0247991 62.434 378 129 5 1 370 1 373 7.08e-164 463
Msa0125690 MtrunA17_Chr2g0311701 59.128 367 143 3 8 370 12 375 5.55e-161 456
Msa0125690 MtrunA17_Chr2g0311711 60.989 364 138 3 8 370 10 370 2.45e-160 454
Msa0125690 MtrunA17_Chr4g0066991 62.568 366 110 5 8 370 12 353 3.30e-157 445
Msa0125690 MtrunA17_Chr2g0311681 56.354 362 151 3 13 370 11 369 1.13e-148 424
Msa0125690 MtrunA17_Chr2g0311691 56.077 362 152 3 13 370 11 369 1.06e-146 419
Msa0125690 MtrunA17_Chr8g0336751 55.041 367 162 2 4 370 34 397 1.01e-145 418
Msa0125690 MtrunA17_Chr8g0336851 51.705 352 161 4 21 370 20 364 6.52e-144 412
Msa0125690 MtrunA17_Chr8g0348081 53.239 355 157 4 18 370 17 364 2.34e-143 410
Msa0125690 MtrunA17_Chr8g0336761 51.622 370 171 4 3 370 1 364 1.84e-142 408
Msa0125690 MtrunA17_Chr8g0336631 51.075 372 171 6 3 370 1 365 2.04e-141 406
Msa0125690 MtrunA17_Chr8g0354241 52.078 361 167 4 13 370 17 374 5.27e-140 403
Msa0125690 MtrunA17_Chr8g0354261 52.078 361 167 4 13 370 17 374 1.41e-139 402
Msa0125690 MtrunA17_Chr8g0336861 52.101 357 160 6 18 370 17 366 6.01e-138 397
Msa0125690 MtrunA17_Chr2g0311741 58.055 329 135 2 42 370 2 327 7.30e-138 395
Msa0125690 MtrunA17_Chr8g0336781 50.562 356 166 5 18 370 52 400 1.13e-136 395
Msa0125690 MtrunA17_Chr2g0311761 50.811 370 176 4 2 370 8 372 8.31e-135 389
Msa0125690 MtrunA17_Chr2g0311831 51.220 369 175 3 2 370 8 371 1.65e-133 386
Msa0125690 MtrunA17_Chr2g0311921 50.838 358 172 3 14 370 4 358 1.04e-132 383
Msa0125690 MtrunA17_Chr6g0472861 50.933 375 170 5 5 370 4 373 5.73e-132 382
Msa0125690 MtrunA17_Chr4g0066121 54.030 335 144 5 18 349 17 344 1.92e-131 380
Msa0125690 MtrunA17_Chr1g0167951 50.418 359 168 4 14 370 5 355 8.01e-131 379
Msa0125690 MtrunA17_Chr2g0311861 48.649 370 167 3 1 370 1 347 5.06e-129 374
Msa0125690 MtrunA17_Chr4g0011311 61.986 292 103 3 1 288 1 288 1.55e-126 366
Msa0125690 MtrunA17_Chr1g0167911 50.571 350 168 3 14 363 5 349 5.25e-126 366
Msa0125690 MtrunA17_Chr1g0184241 49.862 363 174 4 8 370 13 367 6.03e-125 364
Msa0125690 MtrunA17_Chr7g0225881 48.118 372 182 5 5 370 4 370 1.06e-123 361
Msa0125690 MtrunA17_Chr7g0235981 49.171 362 145 5 12 370 2 327 1.49e-121 354
Msa0125690 MtrunA17_Chr1g0167961 49.025 359 175 5 14 370 20 372 1.39e-119 350
Msa0125690 MtrunA17_Chr8g0362741 59.247 292 96 5 1 288 1 273 4.19e-114 333
Msa0125690 MtrunA17_Chr1g0167931 45.658 357 151 4 14 370 5 318 5.33e-108 319
Msa0125690 MtrunA17_Chr7g0266651 42.373 354 199 4 11 363 6 355 4.07e-100 301
Msa0125690 MtrunA17_Chr1g0161081 44.167 360 189 7 13 369 21 371 3.41e-90 275
Msa0125690 MtrunA17_Chr1g0161041 43.855 358 193 4 13 369 44 394 6.08e-89 273
Msa0125690 MtrunA17_Chr1g0161111 42.120 368 205 4 3 369 70 430 7.47e-87 269
Msa0125690 MtrunA17_Chr8g0336831 47.826 230 112 4 18 245 17 240 9.83e-75 232
Msa0125690 MtrunA17_Chr8g0364161 56.593 182 71 3 1 178 1 178 4.49e-67 210
Msa0125690 MtrunA17_Chr8g0336801 60.265 151 60 0 220 370 6 156 2.90e-66 206
Msa0125690 MtrunA17_Chr8g0336871 54.335 173 73 1 193 365 3 169 1.29e-65 206
Msa0125690 MtrunA17_Chr3g0128001 35.174 344 205 7 32 369 5 336 2.54e-61 200
Msa0125690 MtrunA17_Chr7g0235991 54.268 164 73 1 45 208 1 162 1.04e-59 191
Msa0125690 MtrunA17_Chr5g0412651 35.275 309 188 4 57 357 28 332 5.67e-59 194
Msa0125690 MtrunA17_Chr8g0375571 32.853 347 201 9 40 370 20 350 1.66e-56 188
Msa0125690 MtrunA17_Chr7g0265221 33.425 365 215 9 14 357 10 367 2.68e-56 188
Msa0125690 MtrunA17_Chr8g0345831 32.609 322 201 4 56 370 31 343 6.24e-56 186
Msa0125690 MtrunA17_Chr5g0412681 33.871 310 185 5 57 358 23 320 1.85e-55 185
Msa0125690 MtrunA17_Chr5g0421041 33.043 345 199 10 39 370 21 346 6.77e-55 184
Msa0125690 MtrunA17_Chr7g0220011 35.000 300 181 6 66 360 38 328 7.89e-53 178
Msa0125690 MtrunA17_Chr7g0265351 32.581 310 190 5 63 365 35 332 1.46e-52 177
Msa0125690 MtrunA17_Chr3g0126741 32.759 348 214 11 8 344 2 340 1.53e-52 178
Msa0125690 MtrunA17_Chr7g0220001 34.884 301 176 7 66 358 40 328 3.00e-52 176
Msa0125690 MtrunA17_Chr5g0423191 32.070 343 203 10 41 370 23 348 4.02e-52 177
Msa0125690 MtrunA17_Chr8g0375701 31.742 356 223 8 24 370 11 355 4.94e-52 176
Msa0125690 MtrunA17_Chr7g0242551 32.425 367 216 10 19 366 5 358 7.79e-52 176
Msa0125690 MtrunA17_Chr6g0455481 35.161 310 177 9 59 358 35 330 2.72e-51 174
Msa0125690 MtrunA17_Chr5g0421011 33.038 339 207 8 40 370 22 348 2.73e-51 174
Msa0125690 MtrunA17_Chr8g0336791 44.809 183 93 4 18 198 17 193 3.94e-51 169
Msa0125690 MtrunA17_Chr5g0423251 32.849 344 201 10 40 370 22 348 4.27e-51 174
Msa0125690 MtrunA17_Chr5g0420951 33.041 342 205 10 40 370 27 355 7.14e-51 174
Msa0125690 MtrunA17_Chr1g0179801 32.493 357 218 9 28 370 26 373 7.90e-51 174
Msa0125690 MtrunA17_Chr5g0412671 33.546 313 192 6 59 359 30 338 7.93e-51 173
Msa0125690 MtrunA17_Chr5g0423221 31.642 335 208 10 40 365 46 368 1.44e-50 173
Msa0125690 MtrunA17_Chr5g0426891 31.494 308 203 6 67 370 39 342 1.45e-50 172
Msa0125690 MtrunA17_Chr2g0314391 30.793 328 207 9 55 370 54 373 3.99e-50 172
Msa0125690 MtrunA17_Chr1g0184111 34.084 311 190 5 66 369 36 338 4.01e-50 171
Msa0125690 MtrunA17_Chr1g0184161 33.010 309 195 6 66 369 37 338 7.74e-50 170
Msa0125690 MtrunA17_Chr1g0184121 33.442 308 196 4 66 369 36 338 8.40e-50 170
Msa0125690 MtrunA17_Chr5g0420941 30.857 350 220 9 29 370 11 346 8.92e-50 171
Msa0125690 MtrunA17_Chr2g0311631 29.032 372 238 8 4 366 3 357 2.69e-49 169
Msa0125690 MtrunA17_Chr3g0093761 32.565 347 210 10 28 365 17 348 2.92e-49 169
Msa0125690 MtrunA17_Chr5g0421101 30.792 341 212 9 40 370 22 348 3.06e-49 169
Msa0125690 MtrunA17_Chr3g0093741 32.184 348 211 9 28 365 17 349 3.09e-49 169
Msa0125690 MtrunA17_Chr3g0109041 30.226 354 224 8 29 370 10 352 3.90e-49 169
Msa0125690 MtrunA17_Chr5g0423201 32.164 342 207 10 40 370 22 349 1.37e-48 167
Msa0125690 MtrunA17_Chr2g0314381 28.000 350 233 8 29 370 42 380 2.24e-48 167
Msa0125690 MtrunA17_Chr5g0421091 31.909 351 216 12 29 370 11 347 2.86e-48 166
Msa0125690 MtrunA17_Chr1g0162351 32.295 353 196 10 47 370 57 395 2.99e-48 167
Msa0125690 MtrunA17_Chr1g0184151 33.550 307 194 5 66 368 37 337 3.07e-48 166
Msa0125690 MtrunA17_Chr3g0093751 30.925 346 218 8 28 365 17 349 4.65e-48 166
Msa0125690 MtrunA17_Chr1g0162321 32.295 353 196 10 47 370 57 395 8.53e-48 166
Msa0125690 MtrunA17_Chr4g0045431 34.043 329 162 12 47 343 14 319 9.16e-48 165
Msa0125690 MtrunA17_Chr4g0006371 31.564 358 218 9 29 365 14 365 1.32e-47 165
Msa0125690 MtrunA17_Chr4g0045411 32.441 299 170 8 66 342 29 317 3.99e-47 163
Msa0125690 MtrunA17_Chr5g0420901 30.000 350 223 9 29 370 12 347 4.24e-47 163
Msa0125690 MtrunA17_Chr2g0314401 30.484 351 224 10 28 370 16 354 4.73e-47 163
Msa0125690 MtrunA17_Chr8g0375601 29.412 340 224 7 40 370 20 352 6.19e-47 164
Msa0125690 MtrunA17_Chr5g0437181 31.250 352 221 9 29 369 14 355 7.20e-47 163
Msa0125690 MtrunA17_Chr2g0332191 33.631 336 190 11 52 369 35 355 7.64e-47 163
Msa0125690 MtrunA17_Chr1g0184101 33.121 314 190 8 66 370 37 339 1.30e-46 162
Msa0125690 MtrunA17_Chr8g0364171 67.273 110 36 0 179 288 17 126 3.14e-46 154
Msa0125690 MtrunA17_Chr8g0365241 30.547 311 203 6 66 370 56 359 3.55e-46 161
Msa0125690 MtrunA17_Chr8g0375671 29.781 319 212 6 59 370 44 357 4.14e-46 161
Msa0125690 MtrunA17_Chr8g0371921 32.963 270 172 4 54 315 24 292 4.50e-46 161
Msa0125690 MtrunA17_Chr4g0045451 30.588 340 193 10 47 362 14 334 9.12e-46 160
Msa0125690 MtrunA17_Chr4g0045441 33.230 322 174 10 47 343 14 319 1.59e-45 159
Msa0125690 MtrunA17_Chr3g0113641 30.084 359 234 9 20 369 6 356 1.82e-45 159
Msa0125690 MtrunA17_Chr5g0420981 30.625 320 205 8 59 370 45 355 3.95e-45 158
Msa0125690 MtrunA17_Chr8g0371931 32.700 263 168 4 61 315 31 292 6.96e-45 158
Msa0125690 MtrunA17_Chr3g0102041 32.700 263 168 4 61 315 31 292 2.59e-44 156
Msa0125690 MtrunA17_Chr1g0168001 45.029 171 87 5 14 180 5 172 4.28e-44 150
Msa0125690 MtrunA17_Chr4g0050031 31.317 281 184 7 67 342 62 338 1.65e-43 154
Msa0125690 MtrunA17_Chr7g0250511 31.973 294 183 6 66 351 48 332 6.23e-43 152
Msa0125690 MtrunA17_Chr1g0162191 30.164 305 203 5 67 366 47 346 7.75e-43 152
Msa0125690 MtrunA17_Chr2g0311751 55.738 122 54 0 59 180 19 140 8.06e-43 147
Msa0125690 MtrunA17_Chr1g0162361 30.581 327 193 7 67 370 27 342 1.23e-42 151
Msa0125690 MtrunA17_Chr5g0423211 29.060 351 227 9 29 370 13 350 1.29e-42 152
Msa0125690 MtrunA17_Chr4g0045471 31.715 309 174 8 75 353 29 330 3.73e-42 150
Msa0125690 MtrunA17_Chr5g0439011 33.444 302 175 10 65 354 3 290 7.17e-42 149
Msa0125690 MtrunA17_Chr3g0121141 33.557 298 174 11 66 354 3 285 7.22e-42 149
Msa0125690 MtrunA17_Chr3g0125201 30.421 309 177 11 65 356 1 288 1.33e-41 148
Msa0125690 MtrunA17_Chr7g0239111 29.236 301 197 7 67 360 55 346 2.46e-41 149
Msa0125690 MtrunA17_Chr2g0319491 30.619 307 182 8 52 349 20 304 2.52e-41 147
Msa0125690 MtrunA17_Chr7g0239821 29.073 313 192 8 66 364 63 359 2.83e-41 149
Msa0125690 MtrunA17_Chr8g0375681 31.636 275 179 4 101 370 15 285 3.82e-41 146
Msa0125690 MtrunA17_Chr5g0405411 30.798 263 173 4 61 315 31 292 6.54e-41 147
Msa0125690 MtrunA17_Chr2g0296371 29.582 311 198 7 67 365 50 351 1.80e-40 146
Msa0125690 MtrunA17_Chr2g0289341 31.353 303 178 12 68 355 5 292 3.41e-40 144
Msa0125690 MtrunA17_Chr7g0239121 27.778 306 202 8 67 363 51 346 8.65e-40 144
Msa0125690 MtrunA17_Chr1g0204181 31.908 304 177 6 67 351 59 351 1.01e-39 144
Msa0125690 MtrunA17_Chr5g0398291 28.696 345 214 10 29 353 8 340 1.88e-39 143
Msa0125690 MtrunA17_Chr5g0420721 36.041 197 122 2 175 370 57 250 3.55e-39 140
Msa0125690 MtrunA17_Chr7g0239101 28.197 305 201 7 67 363 55 349 6.76e-39 142
Msa0125690 MtrunA17_Chr1g0167921 52.941 119 56 0 169 287 38 156 9.85e-39 136
Msa0125690 MtrunA17_Chr6g0474391 30.462 325 196 8 39 346 40 351 1.78e-38 141
Msa0125690 MtrunA17_Chr8g0370721 30.841 321 199 10 61 370 46 354 7.04e-38 139
Msa0125690 MtrunA17_Chr8g0370711 30.000 310 195 10 61 358 46 345 1.06e-37 139
Msa0125690 MtrunA17_Chr7g0239091 27.451 306 206 5 67 370 160 451 2.58e-37 140
Msa0125690 MtrunA17_Chr3g0130391 28.532 361 222 9 7 346 8 353 1.79e-36 136
Msa0125690 MtrunA17_Chr1g0191201 29.042 334 192 10 42 351 33 345 3.07e-36 135
Msa0125690 MtrunA17_Chr3g0145171 28.197 305 198 8 61 355 46 339 3.92e-36 134
Msa0125690 MtrunA17_Chr4g0045461 30.581 327 189 8 40 343 7 318 8.65e-36 134
Msa0125690 MtrunA17_Chr5g0424201 28.443 334 205 8 34 351 12 327 6.23e-35 130
Msa0125690 MtrunA17_Chr3g0087031 29.032 310 190 8 65 360 58 351 1.98e-34 130
Msa0125690 MtrunA17_Chr5g0424211 29.283 321 189 10 39 340 15 316 4.10e-34 129
Msa0125690 MtrunA17_Chr4g0064781 29.450 309 188 10 50 345 34 325 1.37e-33 127
Msa0125690 MtrunA17_Chr8g0351101 29.641 334 196 7 39 351 30 345 1.81e-33 127
Msa0125690 MtrunA17_Chr7g0232161 30.894 246 151 6 65 300 58 294 2.40e-33 126
Msa0125690 MtrunA17_Chr3g0092531 32.800 250 133 9 85 318 26 256 2.13e-32 123
Msa0125690 MtrunA17_Chr1g0148771 28.440 327 195 10 52 365 50 350 3.04e-32 124
Msa0125690 MtrunA17_Chr6g0488511 28.421 285 179 11 65 338 1 271 3.82e-32 122
Msa0125690 MtrunA17_Chr2g0285931 28.701 331 178 10 67 370 28 327 4.09e-31 120
Msa0125690 MtrunA17_Chr2g0314371 28.431 306 179 9 28 303 16 311 1.97e-30 119
Msa0125690 MtrunA17_Chr3g0126761 36.585 164 99 2 178 339 42 202 3.48e-30 115
Msa0125690 MtrunA17_Chr3g0125421 27.003 337 199 11 40 351 14 328 8.64e-30 117
Msa0125690 MtrunA17_Chr8g0384461 25.937 347 223 8 24 351 6 337 9.30e-30 117
Msa0125690 MtrunA17_Chr3g0145201 27.508 309 209 9 50 349 666 968 2.08e-29 120
Msa0125690 MtrunA17_Chr5g0407731 29.712 313 183 11 67 366 33 321 2.36e-29 115
Msa0125690 MtrunA17_Chr8g0384481 27.273 330 199 9 42 350 38 347 8.59e-29 115
Msa0125690 MtrunA17_Chr3g0145181 27.273 297 202 8 61 349 43 333 9.49e-29 114
Msa0125690 MtrunA17_Chr2g0313111 28.814 295 176 12 66 346 27 301 1.69e-28 113
Msa0125690 MtrunA17_Chr3g0114861 30.000 310 193 7 59 357 32 328 2.09e-28 113
Msa0125690 MtrunA17_Chr5g0407781 27.607 326 183 13 66 370 4 297 4.48e-27 108
Msa0125690 MtrunA17_Chr7g0239071 24.908 273 194 5 99 365 29 296 1.63e-26 107
Msa0125690 MtrunA17_Chr1g0170631 30.000 190 127 3 178 365 1 186 2.37e-26 104
Msa0125690 MtrunA17_Chr3g0114871 28.745 247 156 6 62 297 37 274 5.70e-26 105
Msa0125690 MtrunA17_Chr8g0336841 54.217 83 38 0 288 370 9 91 1.88e-25 98.6
Msa0125690 MtrunA17_Chr4g0075471 42.727 110 59 2 228 336 32 138 2.11e-25 100
Msa0125690 MtrunA17_Chr1g0194321 27.536 345 193 14 59 370 12 332 2.24e-25 105
Msa0125690 MtrunA17_Chr5g0394071 35.119 168 100 2 182 349 4 162 4.39e-25 100
Msa0125690 MtrunA17_Chr1g0161101 39.535 172 92 3 160 330 341 501 5.57e-25 105
Msa0125690 MtrunA17_Chr4g0068891 28.302 318 195 12 67 369 20 319 1.02e-24 102
Msa0125690 MtrunA17_Chr3g0105281 26.718 262 163 8 67 315 34 279 1.98e-24 102
Msa0125690 MtrunA17_Chr8g0358941 27.687 307 183 10 89 370 41 333 8.55e-24 100
Msa0125690 MtrunA17_Chr8g0348951 29.010 293 180 10 66 342 4 284 9.74e-24 100
Msa0125690 MtrunA17_Chr5g0420881 30.822 146 97 2 226 370 2 144 1.62e-23 95.1
Msa0125690 MtrunA17_Chr7g0247741 30.968 310 162 14 59 343 3 285 3.18e-23 98.6
Msa0125690 MtrunA17_Chr6g0486831 26.398 322 198 10 63 356 16 326 3.62e-23 99.0
Msa0125690 MtrunA17_Chr4g0037611 42.149 121 69 1 200 319 11 131 1.40e-22 93.6
Msa0125690 MtrunA17_Chr4g0052251 27.393 303 181 10 67 349 29 312 1.69e-22 97.1
Msa0125690 MtrunA17_Chr7g0233661 39.316 117 71 0 205 321 1 117 1.86e-22 92.8
Msa0125690 MtrunA17_Chr4g0053251 25.382 327 193 11 66 354 7 320 7.35e-22 95.1
Msa0125690 MtrunA17_Chr3g0092581 34.375 160 97 5 193 349 4 158 3.97e-21 89.7
Msa0125690 MtrunA17_Chr1g0158011 25.926 270 186 9 106 370 1 261 9.43e-20 87.8
Msa0125690 MtrunA17_Chr2g0311611 48.571 70 29 1 226 288 2 71 1.02e-19 82.4
Msa0125690 MtrunA17_Chr1g0158021 25.957 235 161 9 53 280 33 261 3.47e-19 86.3
Msa0125690 MtrunA17_Chr8g0389941 26.761 284 176 9 89 344 51 330 7.32e-19 86.7
Msa0125690 MtrunA17_Chr7g0219991 40.187 107 62 2 181 286 249 354 2.00e-18 85.5
Msa0125690 MtrunA17_Chr4g0064771 32.121 165 101 5 185 344 31 189 2.28e-18 82.8
Msa0125690 MtrunA17_Chr4g0055911 26.994 326 203 14 61 365 3 314 2.99e-18 84.7
Msa0125690 MtrunA17_Chr7g0252371 57.143 84 35 1 183 265 1 84 7.55e-18 78.6
Msa0125690 MtrunA17_Chr2g0311821 50.526 95 41 2 71 163 11 101 8.78e-18 79.0
Msa0125690 MtrunA17_Chr2g0319521 33.028 109 73 0 180 288 16 124 1.95e-16 75.5
Msa0125690 MtrunA17_Chr2g0293931 33.793 145 86 5 183 317 10 154 2.25e-15 74.3
Msa0125690 MtrunA17_Chr8g0375581 36.471 85 53 1 202 285 2 86 2.40e-14 68.2
Msa0125690 MtrunA17_Chr4g0004071 24.262 305 203 10 67 357 9 299 1.03e-13 71.2
Msa0125690 MtrunA17_Chr7g0256741 24.415 299 201 10 59 345 3 288 1.72e-12 67.8
Msa0125690 MtrunA17_Chr8g0375591 40.741 81 39 2 61 136 40 116 1.94e-12 63.9
Msa0125690 MtrunA17_Chr1g0170641 27.132 129 88 2 40 167 22 145 1.15e-11 62.8
Msa0125690 MtrunA17_Chr2g0311641 26.816 179 115 6 4 180 3 167 6.85e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0125690 AT1G06620.1 53.994 363 164 2 3 365 1 360 3.31e-142 408
Msa0125690 AT5G59540.1 51.667 360 170 3 13 370 9 366 2.50e-136 393
Msa0125690 AT2G30840.1 54.545 363 159 4 11 370 3 362 2.60e-136 393
Msa0125690 AT5G59530.1 52.355 361 165 5 13 370 8 364 4.95e-135 390
Msa0125690 AT2G30840.3 53.444 363 157 5 11 370 3 356 1.77e-130 378
Msa0125690 AT2G30830.1 51.389 360 167 5 13 370 5 358 2.89e-129 375
Msa0125690 AT1G06650.2 48.895 362 179 4 13 370 10 369 5.87e-128 372
Msa0125690 AT2G25450.1 48.753 361 178 5 12 370 4 359 4.03e-125 364
Msa0125690 AT1G04350.1 49.444 360 175 4 13 370 6 360 7.10e-125 364
Msa0125690 AT1G06640.1 48.760 363 180 4 12 370 9 369 7.39e-125 364
Msa0125690 AT5G43440.1 50.139 359 173 4 15 370 10 365 8.10e-124 361
Msa0125690 AT5G43450.1 49.858 353 172 3 14 365 9 357 1.74e-121 355
Msa0125690 AT1G04380.1 51.662 331 154 2 40 370 21 345 2.65e-121 354
Msa0125690 AT1G03410.2 48.333 360 180 5 14 370 5 361 2.96e-121 355
Msa0125690 AT1G03410.1 48.333 360 180 5 14 370 42 398 1.04e-120 355
Msa0125690 AT3G61400.1 46.814 361 181 6 14 366 10 367 1.61e-117 345
Msa0125690 AT1G06645.1 46.849 365 181 6 12 370 22 379 1.94e-117 346
Msa0125690 AT1G03400.1 46.927 358 178 4 14 370 5 351 3.33e-117 344
Msa0125690 AT1G03400.2 43.523 386 178 5 14 370 5 379 6.98e-111 329
Msa0125690 AT1G06620.2 53.333 285 130 2 3 287 1 282 2.65e-108 319
Msa0125690 AT2G30840.2 53.763 279 125 2 11 287 3 279 4.51e-104 309
Msa0125690 AT5G59540.2 49.640 278 136 3 13 288 9 284 2.19e-99 296
Msa0125690 AT1G06650.1 48.746 279 138 3 13 288 10 286 3.75e-97 291
Msa0125690 AT5G43450.2 50.355 282 135 3 14 294 9 286 1.86e-96 289
Msa0125690 AT1G06640.2 48.276 290 143 4 12 296 9 296 2.56e-95 287
Msa0125690 AT5G43440.2 49.822 281 135 4 15 292 10 287 7.50e-95 285
Msa0125690 AT1G06640.3 48.214 280 140 3 12 288 9 286 2.34e-94 283
Msa0125690 AT3G61400.2 47.163 282 139 5 14 288 10 288 3.22e-91 276
Msa0125690 AT1G04380.2 48.996 249 121 2 40 288 21 263 2.99e-85 259
Msa0125690 AT5G24530.1 35.159 347 202 6 32 368 5 338 4.33e-65 210
Msa0125690 AT4G10500.1 34.286 350 219 7 25 369 2 345 3.24e-62 203
Msa0125690 AT3G13610.1 33.819 343 210 8 28 365 26 356 4.99e-62 203
Msa0125690 AT4G10490.1 33.657 309 195 4 66 369 41 344 9.28e-62 202
Msa0125690 AT1G55290.1 34.670 349 200 10 28 365 25 356 3.35e-61 201
Msa0125690 AT2G36690.2 34.356 326 203 5 26 345 18 338 7.50e-56 187
Msa0125690 AT2G36690.1 34.356 326 203 5 26 345 18 338 7.50e-56 187
Msa0125690 AT3G12900.1 32.845 341 216 8 28 365 21 351 7.69e-56 187
Msa0125690 AT2G38240.1 30.423 355 225 9 21 365 4 346 1.49e-48 167
Msa0125690 AT1G17020.1 30.769 351 227 8 28 370 16 358 7.53e-48 166
Msa0125690 AT4G25300.1 29.462 353 226 11 29 370 16 356 1.20e-46 163
Msa0125690 AT4G16330.2 29.630 324 203 8 50 365 53 359 1.34e-45 160
Msa0125690 AT2G44800.1 32.343 303 188 6 59 353 44 337 2.32e-45 159
Msa0125690 AT3G19000.1 32.278 316 187 7 47 343 14 321 6.37e-45 158
Msa0125690 AT1G78550.1 28.526 312 207 7 67 370 53 356 6.56e-45 158
Msa0125690 AT3G11180.1 31.792 346 215 9 29 363 56 391 9.47e-45 159
Msa0125690 AT4G25310.1 30.028 353 221 12 29 370 16 353 1.53e-44 157
Msa0125690 AT3G11180.2 31.339 351 220 9 29 368 56 396 1.84e-44 158
Msa0125690 AT5G05600.1 30.612 343 223 8 29 363 27 362 1.96e-44 157
Msa0125690 AT3G60290.1 32.673 303 187 6 59 353 44 337 1.33e-43 155
Msa0125690 AT1G17010.1 28.571 350 234 9 29 370 17 358 2.10e-43 154
Msa0125690 AT3G51240.1 31.765 255 167 3 67 315 38 291 3.18e-43 154
Msa0125690 AT3G55970.1 29.830 352 223 9 17 358 12 349 6.91e-41 147
Msa0125690 AT1G77330.1 29.795 292 179 9 65 342 1 280 2.96e-39 142
Msa0125690 AT4G21200.1 33.333 291 166 8 67 349 42 312 6.62e-39 142
Msa0125690 AT3G19010.1 30.063 316 189 8 47 343 14 316 7.49e-39 142
Msa0125690 AT3G19010.4 30.063 316 189 8 47 343 14 316 7.49e-39 142
Msa0125690 AT5G12270.1 29.670 364 234 9 17 370 8 359 1.57e-38 141
Msa0125690 AT5G08640.2 28.107 338 207 10 29 349 6 324 1.70e-38 140
Msa0125690 AT5G08640.1 28.107 338 207 10 29 349 6 324 1.70e-38 140
Msa0125690 AT3G21420.1 31.068 309 197 8 67 365 55 357 2.94e-38 140
Msa0125690 AT1G05010.1 33.452 281 161 11 66 335 3 268 3.13e-38 139
Msa0125690 AT4G22880.1 27.941 340 224 9 29 353 7 340 6.62e-38 139
Msa0125690 AT4G22880.2 27.941 340 224 9 29 353 7 340 6.62e-38 139
Msa0125690 AT4G22880.3 27.941 340 224 9 29 353 7 340 6.62e-38 139
Msa0125690 AT4G25420.1 29.429 333 209 5 36 346 19 347 1.44e-37 139
Msa0125690 AT1G62380.1 32.584 267 156 11 60 316 2 254 2.66e-37 137
Msa0125690 AT5G07200.1 31.310 313 178 9 47 335 36 335 6.87e-37 137
Msa0125690 AT1G78550.2 27.402 281 189 6 98 370 5 278 2.45e-36 133
Msa0125690 AT5G07480.1 29.766 299 188 7 67 351 44 334 2.52e-36 135
Msa0125690 AT1G12010.1 31.835 267 158 10 60 316 2 254 2.56e-36 134
Msa0125690 AT1G15550.1 29.305 331 186 12 53 359 43 349 3.09e-36 135
Msa0125690 AT1G60980.1 31.024 332 195 10 47 354 35 356 4.15e-36 135
Msa0125690 AT3G19000.2 29.885 261 159 6 47 288 14 269 1.00e-34 129
Msa0125690 AT5G20400.1 26.957 345 225 8 20 355 7 333 7.38e-34 129
Msa0125690 AT5G63590.1 29.766 299 186 9 63 349 10 296 2.60e-33 126
Msa0125690 AT5G63600.1 29.063 320 193 11 49 352 15 316 4.06e-33 126
Msa0125690 AT3G19010.3 30.132 302 177 10 47 343 14 286 5.60e-33 125
Msa0125690 AT3G51240.2 33.696 184 116 2 138 315 24 207 1.58e-32 123
Msa0125690 AT1G50960.1 30.483 269 183 4 62 328 35 301 4.62e-32 123
Msa0125690 AT1G80330.1 31.003 329 177 13 66 367 48 353 6.17e-32 123
Msa0125690 AT4G16330.1 30.275 218 141 4 152 365 43 253 7.19e-32 121
Msa0125690 AT5G63600.2 28.972 321 193 12 49 352 15 317 7.97e-32 122
Msa0125690 AT5G05600.2 30.224 268 175 7 29 288 27 290 1.57e-31 121
Msa0125690 AT1G30040.1 29.043 303 169 10 66 346 30 308 3.91e-31 121
Msa0125690 AT4G25420.2 29.286 280 175 4 36 293 19 297 4.41e-31 120
Msa0125690 AT5G51810.1 29.630 297 184 5 64 346 60 345 4.97e-31 121
Msa0125690 AT4G25300.2 30.242 248 148 5 145 370 18 262 2.02e-30 117
Msa0125690 AT2G19590.1 30.545 275 160 12 53 316 3 257 2.20e-30 118
Msa0125690 AT4G25310.2 26.989 352 205 13 29 370 16 325 3.72e-30 118
Msa0125690 AT5G20550.1 25.697 323 228 7 44 358 22 340 6.40e-30 118
Msa0125690 AT3G55970.2 29.682 283 178 8 17 289 12 283 9.74e-30 116
Msa0125690 AT1G49390.1 25.648 347 226 11 20 354 7 333 8.91e-29 115
Msa0125690 AT4G21690.1 30.588 340 196 15 49 369 30 348 1.08e-28 114
Msa0125690 AT5G63595.1 29.210 291 143 12 41 311 2 249 2.03e-28 112
Msa0125690 AT1G78440.1 28.086 324 187 12 63 362 13 314 4.81e-28 112
Msa0125690 AT1G44090.1 27.987 318 205 7 67 368 63 372 2.33e-27 111
Msa0125690 AT3G19010.2 27.273 264 163 7 47 291 14 267 8.83e-27 108
Msa0125690 AT5G51810.2 30.165 242 147 4 64 291 60 293 4.59e-26 106
Msa0125690 AT1G80340.1 40.000 145 80 3 226 369 208 346 1.77e-25 105
Msa0125690 AT5G54000.2 27.597 308 191 9 64 355 43 334 2.61e-25 105
Msa0125690 AT1G14120.2 28.522 291 171 12 67 343 8 275 4.42e-25 103
Msa0125690 AT1G14120.1 28.522 291 171 12 67 343 8 275 4.42e-25 103
Msa0125690 AT1G14120.3 28.522 291 171 12 67 343 8 275 4.42e-25 103
Msa0125690 AT2G19590.2 31.746 252 147 11 78 316 3 242 6.44e-25 103
Msa0125690 AT1G14130.1 26.282 312 195 12 67 365 9 298 1.12e-24 102
Msa0125690 AT4G23340.1 30.519 308 182 12 59 351 2 292 1.60e-24 102
Msa0125690 AT1G30040.2 28.571 245 132 9 66 288 30 253 9.50e-23 96.7
Msa0125690 AT5G63580.2 29.185 233 145 7 66 288 18 240 2.59e-22 94.7
Msa0125690 AT5G63580.1 29.694 229 141 7 66 284 18 236 3.67e-22 94.7
Msa0125690 AT5G58660.1 26.119 268 165 7 69 305 26 291 4.58e-22 96.3
Msa0125690 AT5G43935.1 25.574 305 183 9 67 359 19 291 6.46e-22 95.1
Msa0125690 AT5G07480.2 28.879 232 143 7 134 351 2 225 6.63e-22 94.0
Msa0125690 AT1G47990.1 29.254 335 173 15 67 369 15 317 3.71e-21 93.2
Msa0125690 AT2G34555.1 26.948 308 189 9 67 357 27 315 4.08e-21 93.6
Msa0125690 AT3G47190.1 24.126 286 180 8 53 315 14 285 8.63e-21 92.4
Msa0125690 AT1G49390.2 24.906 265 176 10 102 354 1 254 2.23e-20 90.1
Msa0125690 AT5G54000.1 25.000 260 183 7 102 355 1 254 4.57e-19 86.3
Msa0125690 AT3G49620.1 24.843 318 206 8 40 332 13 322 3.24e-18 85.5
Msa0125690 AT1G02400.1 28.000 325 186 14 61 360 18 319 7.35e-18 84.0
Msa0125690 AT5G58660.2 25.498 251 154 7 69 288 26 274 8.02e-18 83.2
Msa0125690 AT3G50210.4 25.769 260 173 5 83 322 32 291 2.07e-17 82.8
Msa0125690 AT3G50210.1 25.769 260 173 5 83 322 32 291 2.07e-17 82.8
Msa0125690 AT3G50210.3 25.769 260 173 5 83 322 32 291 2.07e-17 82.8
Msa0125690 AT4G23340.2 34.483 145 88 4 211 351 33 174 9.11e-17 78.6
Msa0125690 AT3G46500.5 28.094 299 179 11 66 342 16 300 1.87e-16 79.7
Msa0125690 AT2G06960.1 36.232 138 71 4 220 357 25 145 2.14e-16 75.9
Msa0125690 AT1G52820.1 30.270 185 123 4 186 368 134 314 5.48e-16 78.6
Msa0125690 AT3G49630.3 24.915 293 202 6 57 332 2 293 5.12e-15 75.5
Msa0125690 AT3G49630.1 25.188 266 182 5 83 332 33 297 9.56e-15 75.1
Msa0125690 AT3G46500.7 27.308 260 157 9 66 303 16 265 6.81e-14 72.0
Msa0125690 AT4G16765.3 31.214 173 104 6 180 342 60 227 1.37e-13 70.1
Msa0125690 AT4G16765.6 30.387 181 113 6 180 349 60 238 3.23e-13 69.3
Msa0125690 AT4G16765.1 30.387 181 113 6 180 349 60 238 3.23e-13 69.3
Msa0125690 AT4G16765.2 30.387 181 113 6 180 349 60 238 3.23e-13 69.3
Msa0125690 AT3G50210.2 29.814 161 102 5 169 322 53 209 2.32e-12 66.6
Msa0125690 AT4G16765.5 35.000 120 69 4 237 349 75 192 2.47e-12 65.9
Msa0125690 AT4G03070.1 24.233 326 213 11 62 368 9 319 1.65e-11 65.1
Msa0125690 AT3G49630.2 29.341 167 110 5 169 332 63 224 3.03e-11 63.5
Msa0125690 AT3G46500.4 30.899 178 96 7 173 342 6 164 6.00e-11 61.6

Find 111 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGATAACAATTCCTTTAT+TGG 0.087638 1_3:+54251244 None:intergenic
ACTCTTCCTTGCACCCTTTC+AGG 0.130980 1_3:-54251144 Msa0125690:CDS
CATACTTGCGGTATTTCTTC+TGG 0.229972 1_3:+54251955 None:intergenic
TTCTTTGGTGCACTTCTCTT+TGG 0.231602 1_3:-54250902 Msa0125690:three_prime_UTR
AGAGATTTGGCCTTAGATTA+TGG 0.266250 1_3:-54251665 Msa0125690:CDS
CCCATAGTTAATTCGGGTTC+AGG 0.275729 1_3:+54251608 None:intergenic
TAATCAAAGTTCAAATTATA+AGG 0.275842 1_3:+54250872 None:intergenic
AGAAGTTCCCATAGTTAATT+CGG 0.282269 1_3:+54251601 None:intergenic
CCCTGAACCCGAATTAACTA+TGG 0.283757 1_3:-54251609 Msa0125690:CDS
TCAAAGAAAGTAAGAGCTTT+AGG 0.288431 1_3:-54251743 Msa0125690:CDS
AAGAAAATCCGCCAATCTAT+AGG 0.288921 1_3:-54251222 Msa0125690:CDS
ATCGGAGATCAAGTTCAAAT+TGG 0.289399 1_3:+54252323 None:intergenic
GAGCTATTCTCAGAAGCTTT+AGG 0.296118 1_3:-54251707 Msa0125690:CDS
TGGTATTCCGGTTAGTGTTT+TGG 0.298579 1_3:-54252157 Msa0125690:CDS
CTTTCTCATCATGGAGTTAG+AGG 0.301119 1_3:-54252478 Msa0125690:exon
TCCTTCTTACCTTAGAGATT+TGG 0.304222 1_3:-54251678 Msa0125690:CDS
TGGCAGCAGGGTCCGTAAAA+AGG 0.305500 1_3:+54252025 None:intergenic
AAAGTTCGATATTTCTCTAA+TGG 0.338662 1_3:-54252051 Msa0125690:CDS
GAGAAATTGTCCATAATCTA+AGG 0.338851 1_3:+54251655 None:intergenic
TCTTCTGGATTGGGAGGATC+GGG 0.344839 1_3:+54251970 None:intergenic
TCCAATAAAGGAATTGTTAT+CGG 0.349838 1_3:-54251245 Msa0125690:CDS
TGTTCTATCATATGTGGAAT+TGG 0.351395 1_3:+54252443 None:intergenic
TGCGGTATTTCTTCTGGATT+GGG 0.351699 1_3:+54251961 None:intergenic
AGTGATTAATCATGGTATTC+CGG 0.365484 1_3:-54252169 Msa0125690:CDS
TTGCGGTATTTCTTCTGGAT+TGG 0.368792 1_3:+54251960 None:intergenic
TGTTGTGGTGTTGTTGGACT+TGG 0.377939 1_3:-54251086 Msa0125690:three_prime_UTR
CAAGGTCCTTGGTCCAATAA+AGG 0.378696 1_3:-54251257 Msa0125690:CDS
AATCTAAGGCCAAATCTCTA+AGG 0.387283 1_3:+54251669 None:intergenic
ATATCTTGAAGGTCTATGAT+AGG 0.390808 1_3:+54252267 None:intergenic
TTGTGAATTAAGAATTTGTA+TGG 0.394014 1_3:-54251121 Msa0125690:exon
TTCTTCTGGATTGGGAGGAT+CGG 0.396249 1_3:+54251969 None:intergenic
GAAGTTCCCATAGTTAATTC+GGG 0.398350 1_3:+54251602 None:intergenic
AAGTTCTTCATCAGAATCAA+TGG 0.399345 1_3:-54251520 Msa0125690:CDS
AGAAAATCCGCCAATCTATA+GGG 0.399681 1_3:-54251221 Msa0125690:CDS
ATCAATTGTTGTGGTGTTGT+TGG 0.403298 1_3:-54251092 Msa0125690:three_prime_UTR
TTTCTTCTACTTTCTCATCA+TGG 0.403695 1_3:-54252487 Msa0125690:exon
ATCTCATCCAAAACACTAAC+CGG 0.405079 1_3:+54252150 None:intergenic
TTACGGACCCTGCTGCCAAC+TGG 0.424630 1_3:-54252020 Msa0125690:CDS
AATTGTCATGAAATCAATAT+CGG 0.432971 1_3:+54251571 None:intergenic
TACTACTGTGAAAGAAGTCT+TGG 0.435724 1_3:-54251197 Msa0125690:CDS
GATTAGTGTTTATATCTTGA+AGG 0.437519 1_3:+54252256 None:intergenic
GAGTCCCTCCAGTTGGCAGC+AGG 0.447236 1_3:+54252012 None:intergenic
ACAGTAGTATCCCTATAGAT+TGG 0.448112 1_3:+54251211 None:intergenic
AGAATAGCTCAAAGATTGTC+AGG 0.456408 1_3:+54251720 None:intergenic
AAGAAATACCGCAAGTATGC+AGG 0.456431 1_3:-54251951 Msa0125690:intron
GAATCAAAAGCCGGCGTGAA+AGG 0.460942 1_3:-54252399 Msa0125690:CDS
CCATAGTTAATTCGGGTTCA+GGG 0.464838 1_3:+54251609 None:intergenic
TCTTAATTCACAACCTGAAA+GGG 0.469355 1_3:+54251131 None:intergenic
GTGAAAGGCCTCTTAGAATC+TGG 0.477165 1_3:-54252384 Msa0125690:CDS
GAACTTGAAGACCACCAATC+TGG 0.479431 1_3:+54251537 None:intergenic
AAGCTAGCTATGGAAACTCT+AGG 0.481857 1_3:+54251307 None:intergenic
TTCTAAGAGGCCTTTCACGC+CGG 0.481934 1_3:+54252389 None:intergenic
CTCTAAGGTAAGAAGGATCA+AGG 0.482272 1_3:+54251684 None:intergenic
CTTTATTGGACCAAGGACCT+TGG 0.485130 1_3:+54251258 None:intergenic
CAAGGAAACCATTCTATACA+AGG 0.487279 1_3:-54252086 Msa0125690:CDS
TCGGAGATCAAGTTCAAATT+GGG 0.487470 1_3:+54252324 None:intergenic
TTCTTAATTCACAACCTGAA+AGG 0.491843 1_3:+54251130 None:intergenic
GCCAAATCTCTAAGGTAAGA+AGG 0.493665 1_3:+54251677 None:intergenic
GAAGATTCGAAGTGCATGTA+AGG 0.497098 1_3:-54252208 Msa0125690:CDS
AGTTCTTCATCAGAATCAAT+GGG 0.501988 1_3:-54251519 Msa0125690:CDS
GAGGTTTCATCCAAGGTCCT+TGG 0.508636 1_3:-54251268 Msa0125690:CDS
TATGATAGGGACACTGAACT+TGG 0.510446 1_3:+54252281 None:intergenic
TATCTTGAAGGTCTATGATA+GGG 0.518400 1_3:+54252268 None:intergenic
GTTCACAAGTGTTTACCATC+GGG 0.530662 1_3:-54251350 Msa0125690:CDS
GTTGATGTTCCTCCTCTGCA+TGG 0.531261 1_3:-54251497 Msa0125690:CDS
TACATATTCCAGATTCTAAG+AGG 0.531431 1_3:+54252376 None:intergenic
ATTCTTCTACAAGACCAGAT+TGG 0.532764 1_3:-54251551 Msa0125690:CDS
AAACATTGGTGATCTTCTGC+AGG 0.532811 1_3:-54251462 Msa0125690:intron
TTCCACTGTTCTATCATATG+TGG 0.534025 1_3:+54252437 None:intergenic
AGTCCCTCCAGTTGGCAGCA+GGG 0.536596 1_3:+54252013 None:intergenic
TAATCCATGTTTACATGTTG+AGG 0.536783 1_3:-54252238 Msa0125690:CDS
AGATGCTTCACTTTCATGAT+CGG 0.537892 1_3:+54252305 None:intergenic
TCGAAGTGCATGTAAGGAGT+GGG 0.538796 1_3:-54252202 Msa0125690:CDS
AATTCGGGTTCAGGGCATGC+AGG 0.539005 1_3:+54251617 None:intergenic
GCCTTTGAAGAATCAAAAGC+CGG 0.543063 1_3:-54252408 Msa0125690:CDS
ACTACTGTGAAAGAAGTCTT+GGG 0.544052 1_3:-54251196 Msa0125690:CDS
TGTTCACAAGTGTTTACCAT+CGG 0.545346 1_3:-54251351 Msa0125690:CDS
GTTTGCAAAGAAGCTAGCTA+TGG 0.548364 1_3:+54251297 None:intergenic
CTTCTTTGCAAACTCAGTAG+AGG 0.552479 1_3:-54251287 Msa0125690:CDS
CTTCTGGATTGGGAGGATCG+GGG 0.565105 1_3:+54251971 None:intergenic
GCAAGGAAGAGTTCCCATCA+AGG 0.565323 1_3:+54251155 None:intergenic
CATCTTGTTCATGAAACCTA+CGG 0.566748 1_3:+54252115 None:intergenic
CTCAGTAGAGGTTTCATCCA+AGG 0.567334 1_3:-54251275 Msa0125690:CDS
CTTCTACAAGACCAGATTGG+TGG 0.574735 1_3:-54251548 Msa0125690:CDS
CGGACCCTGCTGCCAACTGG+AGG 0.587707 1_3:-54252017 Msa0125690:CDS
ATGAACAAGATGCTGATGCA+AGG 0.589480 1_3:-54252104 Msa0125690:CDS
AGCTAGCTATGGAAACTCTA+GGG 0.590641 1_3:+54251308 None:intergenic
TCACAACCTGAAAGGGTGCA+AGG 0.591043 1_3:+54251138 None:intergenic
GGATCTCTTGTTGTAAACAT+TGG 0.594751 1_3:-54251476 Msa0125690:CDS
TTCGAAGTGCATGTAAGGAG+TGG 0.595798 1_3:-54252203 Msa0125690:CDS
CCTGAACCCGAATTAACTAT+GGG 0.596387 1_3:-54251608 Msa0125690:CDS
GTAGTATCCCTATAGATTGG+CGG 0.602342 1_3:+54251214 None:intergenic
ACAATTCCTTTATTGGACCA+AGG 0.603315 1_3:+54251251 None:intergenic
GGTATTTCTTCTGGATTGGG+AGG 0.605051 1_3:+54251964 None:intergenic
TTGGGAGAATGAAACATGCG+TGG 0.610879 1_3:+54252342 None:intergenic
TCATATTAAAAGTGTACCTG+TGG 0.612615 1_3:-54250946 Msa0125690:three_prime_UTR
TGAAAGTGAGTCCCTCCAGT+TGG 0.622368 1_3:+54252005 None:intergenic
GGACCCTGCTGCCAACTGGA+GGG 0.624510 1_3:-54252016 Msa0125690:CDS
AGTACCTCAACATGTAAACA+TGG 0.631590 1_3:+54252234 None:intergenic
AGATGATTAGTGGAATCCGT+AGG 0.632212 1_3:-54252131 Msa0125690:CDS
TAACATTACCTGCATACTTG+CGG 0.634719 1_3:+54251943 None:intergenic
CGAAGTGCATGTAAGGAGTG+GGG 0.653285 1_3:-54252201 Msa0125690:CDS
TGGGAGAATGAAACATGCGT+GGG 0.654406 1_3:+54252343 None:intergenic
ATGGAGTTAGAGGCAAGTAA+CGG 0.657317 1_3:-54252468 Msa0125690:CDS
TGGAGCAGTATCAATTGTTG+TGG 0.666527 1_3:-54251101 Msa0125690:three_prime_UTR
AAGGAAACCATTCTATACAA+GGG 0.666588 1_3:-54252085 Msa0125690:CDS
ACAAGAGATCCATGCAGAGG+AGG 0.681103 1_3:+54251488 None:intergenic
AAGTTATTAAATGTAACCAC+AGG 0.683519 1_3:+54250930 None:intergenic
TATGCTTCGATAAAACCCGA+TGG 0.683714 1_3:+54251335 None:intergenic
ACAACAAGAGATCCATGCAG+AGG 0.698408 1_3:+54251485 None:intergenic
TTCCACATATGATAGAACAG+TGG 0.718159 1_3:-54252439 Msa0125690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTAGTTTTATATCTTT+TGG - chr1_3:54251446-54251465 Msa0125690:intron 15.0%
!!! TTAATAACTTTCATTTTCTT+TGG - chr1_3:54252456-54252475 Msa0125690:CDS 15.0%
!! TAATCAAAGTTCAAATTATA+AGG + chr1_3:54252504-54252523 None:intergenic 15.0%
!!! AATGTTAGTTTTATATCTTT+TGG - chr1_3:54251446-54251465 Msa0125690:intron 15.0%
!!! TTAATAACTTTCATTTTCTT+TGG - chr1_3:54252456-54252475 Msa0125690:CDS 15.0%
!! TAATCAAAGTTCAAATTATA+AGG + chr1_3:54252504-54252523 None:intergenic 15.0%
!!! TTTTTTCAAGTGATTAATCA+TGG - chr1_3:54251196-54251215 Msa0125690:CDS 20.0%
!!! TAGTTTTATATCTTTTGGAT+CGG - chr1_3:54251451-54251470 Msa0125690:intron 20.0%
!! AATTGTCATGAAATCAATAT+CGG + chr1_3:54251805-54251824 None:intergenic 20.0%
!! TTGTGAATTAAGAATTTGTA+TGG - chr1_3:54252252-54252271 Msa0125690:CDS 20.0%
!!! TTTAGTCTTGCATTTTATTA+TGG - chr1_3:54252311-54252330 Msa0125690:CDS 20.0%
!!! TTTTTTCAAGTGATTAATCA+TGG - chr1_3:54251196-54251215 Msa0125690:CDS 20.0%
!!! TAGTTTTATATCTTTTGGAT+CGG - chr1_3:54251451-54251470 Msa0125690:intron 20.0%
!! AATTGTCATGAAATCAATAT+CGG + chr1_3:54251805-54251824 None:intergenic 20.0%
!! TTGTGAATTAAGAATTTGTA+TGG - chr1_3:54252252-54252271 Msa0125690:CDS 20.0%
!!! TTTAGTCTTGCATTTTATTA+TGG - chr1_3:54252311-54252330 Msa0125690:CDS 20.0%
! GATTAGTGTTTATATCTTGA+AGG + chr1_3:54251120-54251139 None:intergenic 25.0%
! AAAGTTCGATATTTCTCTAA+TGG - chr1_3:54251322-54251341 Msa0125690:CDS 25.0%
!!! AGTTTTATATCTTTTGGATC+GGG - chr1_3:54251452-54251471 Msa0125690:intron 25.0%
! TTGATGAGATGATTATGTAT+TGG - chr1_3:54251585-54251604 Msa0125690:CDS 25.0%
! TCCAATAAAGGAATTGTTAT+CGG - chr1_3:54252128-54252147 Msa0125690:CDS 25.0%
!!! TTGGGACATTATTTTACAAA+AGG - chr1_3:54252195-54252214 Msa0125690:CDS 25.0%
!! ACACTTTTAATATGAAGTGT+TGG + chr1_3:54252422-54252441 None:intergenic 25.0%
! AAGTTATTAAATGTAACCAC+AGG + chr1_3:54252446-54252465 None:intergenic 25.0%
! GATTAGTGTTTATATCTTGA+AGG + chr1_3:54251120-54251139 None:intergenic 25.0%
! AAAGTTCGATATTTCTCTAA+TGG - chr1_3:54251322-54251341 Msa0125690:CDS 25.0%
!!! AGTTTTATATCTTTTGGATC+GGG - chr1_3:54251452-54251471 Msa0125690:intron 25.0%
! TTGATGAGATGATTATGTAT+TGG - chr1_3:54251585-54251604 Msa0125690:CDS 25.0%
! TCCAATAAAGGAATTGTTAT+CGG - chr1_3:54252128-54252147 Msa0125690:CDS 25.0%
!!! TTGGGACATTATTTTACAAA+AGG - chr1_3:54252195-54252214 Msa0125690:CDS 25.0%
!! ACACTTTTAATATGAAGTGT+TGG + chr1_3:54252422-54252441 None:intergenic 25.0%
! AAGTTATTAAATGTAACCAC+AGG + chr1_3:54252446-54252465 None:intergenic 25.0%
TTTCTTCTACTTTCTCATCA+TGG - chr1_3:54250886-54250905 Msa0125690:three_prime_UTR 30.0%
TGTTCTATCATATGTGGAAT+TGG + chr1_3:54250933-54250952 None:intergenic 30.0%
TACATATTCCAGATTCTAAG+AGG + chr1_3:54251000-54251019 None:intergenic 30.0%
TATCTTGAAGGTCTATGATA+GGG + chr1_3:54251108-54251127 None:intergenic 30.0%
ATATCTTGAAGGTCTATGAT+AGG + chr1_3:54251109-54251128 None:intergenic 30.0%
TAATCCATGTTTACATGTTG+AGG - chr1_3:54251135-54251154 Msa0125690:exon 30.0%
AGTGATTAATCATGGTATTC+CGG - chr1_3:54251204-54251223 Msa0125690:CDS 30.0%
AAGGAAACCATTCTATACAA+GGG - chr1_3:54251288-54251307 Msa0125690:CDS 30.0%
! CTTTTATCCCTTGTATAGAA+TGG + chr1_3:54251298-54251317 None:intergenic 30.0%
TAATCATCTCATCAAAGACA+AGG + chr1_3:54251580-54251599 None:intergenic 30.0%
TCAAAGAAAGTAAGAGCTTT+AGG - chr1_3:54251630-54251649 Msa0125690:CDS 30.0%
GAGAAATTGTCCATAATCTA+AGG + chr1_3:54251721-54251740 None:intergenic 30.0%
AGAAGTTCCCATAGTTAATT+CGG + chr1_3:54251775-54251794 None:intergenic 30.0%
AAGTTCTTCATCAGAATCAA+TGG - chr1_3:54251853-54251872 Msa0125690:intron 30.0%
AGTTCTTCATCAGAATCAAT+GGG - chr1_3:54251854-54251873 Msa0125690:intron 30.0%
TCCGATAACAATTCCTTTAT+TGG + chr1_3:54252132-54252151 None:intergenic 30.0%
! TATTTTACAAAAGGCCTTGA+TGG - chr1_3:54252204-54252223 Msa0125690:CDS 30.0%
! ATTTTACAAAAGGCCTTGAT+GGG - chr1_3:54252205-54252224 Msa0125690:CDS 30.0%
TCTTAATTCACAACCTGAAA+GGG + chr1_3:54252245-54252264 None:intergenic 30.0%
TTCTTAATTCACAACCTGAA+AGG + chr1_3:54252246-54252265 None:intergenic 30.0%
! TCATATTAAAAGTGTACCTG+TGG - chr1_3:54252427-54252446 Msa0125690:CDS 30.0%
TTTCTTCTACTTTCTCATCA+TGG - chr1_3:54250886-54250905 Msa0125690:three_prime_UTR 30.0%
TGTTCTATCATATGTGGAAT+TGG + chr1_3:54250933-54250952 None:intergenic 30.0%
TACATATTCCAGATTCTAAG+AGG + chr1_3:54251000-54251019 None:intergenic 30.0%
TATCTTGAAGGTCTATGATA+GGG + chr1_3:54251108-54251127 None:intergenic 30.0%
ATATCTTGAAGGTCTATGAT+AGG + chr1_3:54251109-54251128 None:intergenic 30.0%
TAATCCATGTTTACATGTTG+AGG - chr1_3:54251135-54251154 Msa0125690:exon 30.0%
AGTGATTAATCATGGTATTC+CGG - chr1_3:54251204-54251223 Msa0125690:CDS 30.0%
AAGGAAACCATTCTATACAA+GGG - chr1_3:54251288-54251307 Msa0125690:CDS 30.0%
! CTTTTATCCCTTGTATAGAA+TGG + chr1_3:54251298-54251317 None:intergenic 30.0%
TAATCATCTCATCAAAGACA+AGG + chr1_3:54251580-54251599 None:intergenic 30.0%
TCAAAGAAAGTAAGAGCTTT+AGG - chr1_3:54251630-54251649 Msa0125690:CDS 30.0%
GAGAAATTGTCCATAATCTA+AGG + chr1_3:54251721-54251740 None:intergenic 30.0%
AGAAGTTCCCATAGTTAATT+CGG + chr1_3:54251775-54251794 None:intergenic 30.0%
AAGTTCTTCATCAGAATCAA+TGG - chr1_3:54251853-54251872 Msa0125690:intron 30.0%
AGTTCTTCATCAGAATCAAT+GGG - chr1_3:54251854-54251873 Msa0125690:intron 30.0%
TCCGATAACAATTCCTTTAT+TGG + chr1_3:54252132-54252151 None:intergenic 30.0%
! TATTTTACAAAAGGCCTTGA+TGG - chr1_3:54252204-54252223 Msa0125690:CDS 30.0%
! ATTTTACAAAAGGCCTTGAT+GGG - chr1_3:54252205-54252224 Msa0125690:CDS 30.0%
TCTTAATTCACAACCTGAAA+GGG + chr1_3:54252245-54252264 None:intergenic 30.0%
TTCTTAATTCACAACCTGAA+AGG + chr1_3:54252246-54252265 None:intergenic 30.0%
! TCATATTAAAAGTGTACCTG+TGG - chr1_3:54252427-54252446 Msa0125690:CDS 30.0%
TTCCACATATGATAGAACAG+TGG - chr1_3:54250934-54250953 Msa0125690:three_prime_UTR 35.0%
TTCCACTGTTCTATCATATG+TGG + chr1_3:54250939-54250958 None:intergenic 35.0%
TCGGAGATCAAGTTCAAATT+GGG + chr1_3:54251052-54251071 None:intergenic 35.0%
ATCGGAGATCAAGTTCAAAT+TGG + chr1_3:54251053-54251072 None:intergenic 35.0%
AGATGCTTCACTTTCATGAT+CGG + chr1_3:54251071-54251090 None:intergenic 35.0%
AGTACCTCAACATGTAAACA+TGG + chr1_3:54251142-54251161 None:intergenic 35.0%
ATCTCATCCAAAACACTAAC+CGG + chr1_3:54251226-54251245 None:intergenic 35.0%
!! GTTTTGGATGAGATGATTAG+TGG - chr1_3:54251232-54251251 Msa0125690:CDS 35.0%
CATCTTGTTCATGAAACCTA+CGG + chr1_3:54251261-54251280 None:intergenic 35.0%
CAAGGAAACCATTCTATACA+AGG - chr1_3:54251287-54251306 Msa0125690:CDS 35.0%
! CTCTAATGGTAGCCTTTTTA+CGG - chr1_3:54251336-54251355 Msa0125690:CDS 35.0%
TAACATTACCTGCATACTTG+CGG + chr1_3:54251433-54251452 None:intergenic 35.0%
AGAATAGCTCAAAGATTGTC+AGG + chr1_3:54251656-54251675 None:intergenic 35.0%
TCCTTCTTACCTTAGAGATT+TGG - chr1_3:54251695-54251714 Msa0125690:CDS 35.0%
! AATCTAAGGCCAAATCTCTA+AGG + chr1_3:54251707-54251726 None:intergenic 35.0%
!! AGAGATTTGGCCTTAGATTA+TGG - chr1_3:54251708-54251727 Msa0125690:CDS 35.0%
GAAGTTCCCATAGTTAATTC+GGG + chr1_3:54251774-54251793 None:intergenic 35.0%
ATTCTTCTACAAGACCAGAT+TGG - chr1_3:54251822-54251841 Msa0125690:intron 35.0%
! GGATCTCTTGTTGTAAACAT+TGG - chr1_3:54251897-54251916 Msa0125690:intron 35.0%
TGTTCACAAGTGTTTACCAT+CGG - chr1_3:54252022-54252041 Msa0125690:CDS 35.0%
ACAATTCCTTTATTGGACCA+AGG + chr1_3:54252125-54252144 None:intergenic 35.0%
AAGAAAATCCGCCAATCTAT+AGG - chr1_3:54252151-54252170 Msa0125690:CDS 35.0%
AGAAAATCCGCCAATCTATA+GGG - chr1_3:54252152-54252171 Msa0125690:CDS 35.0%
ACAGTAGTATCCCTATAGAT+TGG + chr1_3:54252165-54252184 None:intergenic 35.0%
TACTACTGTGAAAGAAGTCT+TGG - chr1_3:54252176-54252195 Msa0125690:CDS 35.0%
ACTACTGTGAAAGAAGTCTT+GGG - chr1_3:54252177-54252196 Msa0125690:CDS 35.0%
!! ATCAATTGTTGTGGTGTTGT+TGG - chr1_3:54252281-54252300 Msa0125690:CDS 35.0%
TTCCACATATGATAGAACAG+TGG - chr1_3:54250934-54250953 Msa0125690:three_prime_UTR 35.0%
TTCCACTGTTCTATCATATG+TGG + chr1_3:54250939-54250958 None:intergenic 35.0%
TCGGAGATCAAGTTCAAATT+GGG + chr1_3:54251052-54251071 None:intergenic 35.0%
ATCGGAGATCAAGTTCAAAT+TGG + chr1_3:54251053-54251072 None:intergenic 35.0%
AGATGCTTCACTTTCATGAT+CGG + chr1_3:54251071-54251090 None:intergenic 35.0%
AGTACCTCAACATGTAAACA+TGG + chr1_3:54251142-54251161 None:intergenic 35.0%
ATCTCATCCAAAACACTAAC+CGG + chr1_3:54251226-54251245 None:intergenic 35.0%
!! GTTTTGGATGAGATGATTAG+TGG - chr1_3:54251232-54251251 Msa0125690:CDS 35.0%
CATCTTGTTCATGAAACCTA+CGG + chr1_3:54251261-54251280 None:intergenic 35.0%
CAAGGAAACCATTCTATACA+AGG - chr1_3:54251287-54251306 Msa0125690:CDS 35.0%
! CTCTAATGGTAGCCTTTTTA+CGG - chr1_3:54251336-54251355 Msa0125690:CDS 35.0%
TAACATTACCTGCATACTTG+CGG + chr1_3:54251433-54251452 None:intergenic 35.0%
AGAATAGCTCAAAGATTGTC+AGG + chr1_3:54251656-54251675 None:intergenic 35.0%
TCCTTCTTACCTTAGAGATT+TGG - chr1_3:54251695-54251714 Msa0125690:CDS 35.0%
! AATCTAAGGCCAAATCTCTA+AGG + chr1_3:54251707-54251726 None:intergenic 35.0%
!! AGAGATTTGGCCTTAGATTA+TGG - chr1_3:54251708-54251727 Msa0125690:CDS 35.0%
GAAGTTCCCATAGTTAATTC+GGG + chr1_3:54251774-54251793 None:intergenic 35.0%
ATTCTTCTACAAGACCAGAT+TGG - chr1_3:54251822-54251841 Msa0125690:intron 35.0%
! GGATCTCTTGTTGTAAACAT+TGG - chr1_3:54251897-54251916 Msa0125690:intron 35.0%
TGTTCACAAGTGTTTACCAT+CGG - chr1_3:54252022-54252041 Msa0125690:CDS 35.0%
ACAATTCCTTTATTGGACCA+AGG + chr1_3:54252125-54252144 None:intergenic 35.0%
AAGAAAATCCGCCAATCTAT+AGG - chr1_3:54252151-54252170 Msa0125690:CDS 35.0%
AGAAAATCCGCCAATCTATA+GGG - chr1_3:54252152-54252171 Msa0125690:CDS 35.0%
ACAGTAGTATCCCTATAGAT+TGG + chr1_3:54252165-54252184 None:intergenic 35.0%
TACTACTGTGAAAGAAGTCT+TGG - chr1_3:54252176-54252195 Msa0125690:CDS 35.0%
ACTACTGTGAAAGAAGTCTT+GGG - chr1_3:54252177-54252196 Msa0125690:CDS 35.0%
!! ATCAATTGTTGTGGTGTTGT+TGG - chr1_3:54252281-54252300 Msa0125690:CDS 35.0%
CTTTCTCATCATGGAGTTAG+AGG - chr1_3:54250895-54250914 Msa0125690:three_prime_UTR 40.0%
ATGGAGTTAGAGGCAAGTAA+CGG - chr1_3:54250905-54250924 Msa0125690:three_prime_UTR 40.0%
! GCCTTTGAAGAATCAAAAGC+CGG - chr1_3:54250965-54250984 Msa0125690:three_prime_UTR 40.0%
TATGATAGGGACACTGAACT+TGG + chr1_3:54251095-54251114 None:intergenic 40.0%
GAAGATTCGAAGTGCATGTA+AGG - chr1_3:54251165-54251184 Msa0125690:CDS 40.0%
! TGGTATTCCGGTTAGTGTTT+TGG - chr1_3:54251216-54251235 Msa0125690:CDS 40.0%
AGATGATTAGTGGAATCCGT+AGG - chr1_3:54251242-54251261 Msa0125690:CDS 40.0%
ATGAACAAGATGCTGATGCA+AGG - chr1_3:54251269-54251288 Msa0125690:CDS 40.0%
TGCGGTATTTCTTCTGGATT+GGG + chr1_3:54251415-54251434 None:intergenic 40.0%
TTGCGGTATTTCTTCTGGAT+TGG + chr1_3:54251416-54251435 None:intergenic 40.0%
CATACTTGCGGTATTTCTTC+TGG + chr1_3:54251421-54251440 None:intergenic 40.0%
AAGAAATACCGCAAGTATGC+AGG - chr1_3:54251422-54251441 Msa0125690:intron 40.0%
GAGCTATTCTCAGAAGCTTT+AGG - chr1_3:54251666-54251685 Msa0125690:CDS 40.0%
!! CTCTAAGGTAAGAAGGATCA+AGG + chr1_3:54251692-54251711 None:intergenic 40.0%
!! GCCAAATCTCTAAGGTAAGA+AGG + chr1_3:54251699-54251718 None:intergenic 40.0%
! CCATAGTTAATTCGGGTTCA+GGG + chr1_3:54251767-54251786 None:intergenic 40.0%
CCTGAACCCGAATTAACTAT+GGG - chr1_3:54251765-54251784 Msa0125690:CDS 40.0%
! AAACATTGGTGATCTTCTGC+AGG - chr1_3:54251911-54251930 Msa0125690:intron 40.0%
GTTCACAAGTGTTTACCATC+GGG - chr1_3:54252023-54252042 Msa0125690:CDS 40.0%
TATGCTTCGATAAAACCCGA+TGG + chr1_3:54252041-54252060 None:intergenic 40.0%
!! CGGGTTTTATCGAAGCATAT+AGG - chr1_3:54252042-54252061 Msa0125690:CDS 40.0%
AGCTAGCTATGGAAACTCTA+GGG + chr1_3:54252068-54252087 None:intergenic 40.0%
AAGCTAGCTATGGAAACTCT+AGG + chr1_3:54252069-54252088 None:intergenic 40.0%
GTTTGCAAAGAAGCTAGCTA+TGG + chr1_3:54252079-54252098 None:intergenic 40.0%
CTTCTTTGCAAACTCAGTAG+AGG - chr1_3:54252086-54252105 Msa0125690:CDS 40.0%
GTAGTATCCCTATAGATTGG+CGG + chr1_3:54252162-54252181 None:intergenic 40.0%
TGGAGCAGTATCAATTGTTG+TGG - chr1_3:54252272-54252291 Msa0125690:CDS 40.0%
! TTCTTTGGTGCACTTCTCTT+TGG - chr1_3:54252471-54252490 Msa0125690:CDS 40.0%
CTTTCTCATCATGGAGTTAG+AGG - chr1_3:54250895-54250914 Msa0125690:three_prime_UTR 40.0%
ATGGAGTTAGAGGCAAGTAA+CGG - chr1_3:54250905-54250924 Msa0125690:three_prime_UTR 40.0%
! GCCTTTGAAGAATCAAAAGC+CGG - chr1_3:54250965-54250984 Msa0125690:three_prime_UTR 40.0%
TATGATAGGGACACTGAACT+TGG + chr1_3:54251095-54251114 None:intergenic 40.0%
GAAGATTCGAAGTGCATGTA+AGG - chr1_3:54251165-54251184 Msa0125690:CDS 40.0%
! TGGTATTCCGGTTAGTGTTT+TGG - chr1_3:54251216-54251235 Msa0125690:CDS 40.0%
AGATGATTAGTGGAATCCGT+AGG - chr1_3:54251242-54251261 Msa0125690:CDS 40.0%
ATGAACAAGATGCTGATGCA+AGG - chr1_3:54251269-54251288 Msa0125690:CDS 40.0%
TGCGGTATTTCTTCTGGATT+GGG + chr1_3:54251415-54251434 None:intergenic 40.0%
TTGCGGTATTTCTTCTGGAT+TGG + chr1_3:54251416-54251435 None:intergenic 40.0%
CATACTTGCGGTATTTCTTC+TGG + chr1_3:54251421-54251440 None:intergenic 40.0%
AAGAAATACCGCAAGTATGC+AGG - chr1_3:54251422-54251441 Msa0125690:intron 40.0%
GAGCTATTCTCAGAAGCTTT+AGG - chr1_3:54251666-54251685 Msa0125690:CDS 40.0%
!! CTCTAAGGTAAGAAGGATCA+AGG + chr1_3:54251692-54251711 None:intergenic 40.0%
!! GCCAAATCTCTAAGGTAAGA+AGG + chr1_3:54251699-54251718 None:intergenic 40.0%
! CCATAGTTAATTCGGGTTCA+GGG + chr1_3:54251767-54251786 None:intergenic 40.0%
CCTGAACCCGAATTAACTAT+GGG - chr1_3:54251765-54251784 Msa0125690:CDS 40.0%
! AAACATTGGTGATCTTCTGC+AGG - chr1_3:54251911-54251930 Msa0125690:intron 40.0%
GTTCACAAGTGTTTACCATC+GGG - chr1_3:54252023-54252042 Msa0125690:CDS 40.0%
TATGCTTCGATAAAACCCGA+TGG + chr1_3:54252041-54252060 None:intergenic 40.0%
!! CGGGTTTTATCGAAGCATAT+AGG - chr1_3:54252042-54252061 Msa0125690:CDS 40.0%
AGCTAGCTATGGAAACTCTA+GGG + chr1_3:54252068-54252087 None:intergenic 40.0%
AAGCTAGCTATGGAAACTCT+AGG + chr1_3:54252069-54252088 None:intergenic 40.0%
GTTTGCAAAGAAGCTAGCTA+TGG + chr1_3:54252079-54252098 None:intergenic 40.0%
CTTCTTTGCAAACTCAGTAG+AGG - chr1_3:54252086-54252105 Msa0125690:CDS 40.0%
GTAGTATCCCTATAGATTGG+CGG + chr1_3:54252162-54252181 None:intergenic 40.0%
TGGAGCAGTATCAATTGTTG+TGG - chr1_3:54252272-54252291 Msa0125690:CDS 40.0%
! TTCTTTGGTGCACTTCTCTT+TGG - chr1_3:54252471-54252490 Msa0125690:CDS 40.0%
!! GCCGGCTTTTGATTCTTCAA+AGG + chr1_3:54250969-54250988 None:intergenic 45.0%
GTGAAAGGCCTCTTAGAATC+TGG - chr1_3:54250989-54251008 Msa0125690:three_prime_UTR 45.0%
TGGGAGAATGAAACATGCGT+GGG + chr1_3:54251033-54251052 None:intergenic 45.0%
TTGGGAGAATGAAACATGCG+TGG + chr1_3:54251034-54251053 None:intergenic 45.0%
TTCGAAGTGCATGTAAGGAG+TGG - chr1_3:54251170-54251189 Msa0125690:CDS 45.0%
TCGAAGTGCATGTAAGGAGT+GGG - chr1_3:54251171-54251190 Msa0125690:CDS 45.0%
! TTCTTCTGGATTGGGAGGAT+CGG + chr1_3:54251407-54251426 None:intergenic 45.0%
! GGTATTTCTTCTGGATTGGG+AGG + chr1_3:54251412-54251431 None:intergenic 45.0%
CCCTGAACCCGAATTAACTA+TGG - chr1_3:54251764-54251783 Msa0125690:CDS 45.0%
! CCCATAGTTAATTCGGGTTC+AGG + chr1_3:54251768-54251787 None:intergenic 45.0%
CTTCTACAAGACCAGATTGG+TGG - chr1_3:54251825-54251844 Msa0125690:intron 45.0%
GAACTTGAAGACCACCAATC+TGG + chr1_3:54251839-54251858 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+AGG + chr1_3:54251891-54251910 None:intergenic 45.0%
CTCAGTAGAGGTTTCATCCA+AGG - chr1_3:54252098-54252117 Msa0125690:CDS 45.0%
CTTTATTGGACCAAGGACCT+TGG + chr1_3:54252118-54252137 None:intergenic 45.0%
CAAGGTCCTTGGTCCAATAA+AGG - chr1_3:54252116-54252135 Msa0125690:CDS 45.0%
!! TGTTGTGGTGTTGTTGGACT+TGG - chr1_3:54252287-54252306 Msa0125690:CDS 45.0%
!! GCCGGCTTTTGATTCTTCAA+AGG + chr1_3:54250969-54250988 None:intergenic 45.0%
GTGAAAGGCCTCTTAGAATC+TGG - chr1_3:54250989-54251008 Msa0125690:three_prime_UTR 45.0%
TGGGAGAATGAAACATGCGT+GGG + chr1_3:54251033-54251052 None:intergenic 45.0%
TTGGGAGAATGAAACATGCG+TGG + chr1_3:54251034-54251053 None:intergenic 45.0%
TTCGAAGTGCATGTAAGGAG+TGG - chr1_3:54251170-54251189 Msa0125690:CDS 45.0%
TCGAAGTGCATGTAAGGAGT+GGG - chr1_3:54251171-54251190 Msa0125690:CDS 45.0%
! TTCTTCTGGATTGGGAGGAT+CGG + chr1_3:54251407-54251426 None:intergenic 45.0%
! GGTATTTCTTCTGGATTGGG+AGG + chr1_3:54251412-54251431 None:intergenic 45.0%
CCCTGAACCCGAATTAACTA+TGG - chr1_3:54251764-54251783 Msa0125690:CDS 45.0%
! CCCATAGTTAATTCGGGTTC+AGG + chr1_3:54251768-54251787 None:intergenic 45.0%
CTTCTACAAGACCAGATTGG+TGG - chr1_3:54251825-54251844 Msa0125690:intron 45.0%
GAACTTGAAGACCACCAATC+TGG + chr1_3:54251839-54251858 None:intergenic 45.0%
ACAACAAGAGATCCATGCAG+AGG + chr1_3:54251891-54251910 None:intergenic 45.0%
CTCAGTAGAGGTTTCATCCA+AGG - chr1_3:54252098-54252117 Msa0125690:CDS 45.0%
CTTTATTGGACCAAGGACCT+TGG + chr1_3:54252118-54252137 None:intergenic 45.0%
CAAGGTCCTTGGTCCAATAA+AGG - chr1_3:54252116-54252135 Msa0125690:CDS 45.0%
!! TGTTGTGGTGTTGTTGGACT+TGG - chr1_3:54252287-54252306 Msa0125690:CDS 45.0%
GAATCAAAAGCCGGCGTGAA+AGG - chr1_3:54250974-54250993 Msa0125690:three_prime_UTR 50.0%
! TTCTAAGAGGCCTTTCACGC+CGG + chr1_3:54250987-54251006 None:intergenic 50.0%
CGAAGTGCATGTAAGGAGTG+GGG - chr1_3:54251172-54251191 Msa0125690:CDS 50.0%
TGAAAGTGAGTCCCTCCAGT+TGG + chr1_3:54251371-54251390 None:intergenic 50.0%
! TCTTCTGGATTGGGAGGATC+GGG + chr1_3:54251406-54251425 None:intergenic 50.0%
GTTGATGTTCCTCCTCTGCA+TGG - chr1_3:54251876-54251895 Msa0125690:intron 50.0%
ACAAGAGATCCATGCAGAGG+AGG + chr1_3:54251888-54251907 None:intergenic 50.0%
GAGGTTTCATCCAAGGTCCT+TGG - chr1_3:54252105-54252124 Msa0125690:CDS 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_3:54252221-54252240 None:intergenic 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_3:54252229-54252248 Msa0125690:CDS 50.0%
! TCACAACCTGAAAGGGTGCA+AGG + chr1_3:54252238-54252257 None:intergenic 50.0%
GAATCAAAAGCCGGCGTGAA+AGG - chr1_3:54250974-54250993 Msa0125690:three_prime_UTR 50.0%
! TTCTAAGAGGCCTTTCACGC+CGG + chr1_3:54250987-54251006 None:intergenic 50.0%
CGAAGTGCATGTAAGGAGTG+GGG - chr1_3:54251172-54251191 Msa0125690:CDS 50.0%
TGAAAGTGAGTCCCTCCAGT+TGG + chr1_3:54251371-54251390 None:intergenic 50.0%
! TCTTCTGGATTGGGAGGATC+GGG + chr1_3:54251406-54251425 None:intergenic 50.0%
GTTGATGTTCCTCCTCTGCA+TGG - chr1_3:54251876-54251895 Msa0125690:intron 50.0%
ACAAGAGATCCATGCAGAGG+AGG + chr1_3:54251888-54251907 None:intergenic 50.0%
GAGGTTTCATCCAAGGTCCT+TGG - chr1_3:54252105-54252124 Msa0125690:CDS 50.0%
GCAAGGAAGAGTTCCCATCA+AGG + chr1_3:54252221-54252240 None:intergenic 50.0%
ACTCTTCCTTGCACCCTTTC+AGG - chr1_3:54252229-54252248 Msa0125690:CDS 50.0%
! TCACAACCTGAAAGGGTGCA+AGG + chr1_3:54252238-54252257 None:intergenic 50.0%
TGGCAGCAGGGTCCGTAAAA+AGG + chr1_3:54251351-54251370 None:intergenic 55.0%
! CTTCTGGATTGGGAGGATCG+GGG + chr1_3:54251405-54251424 None:intergenic 55.0%
! AATTCGGGTTCAGGGCATGC+AGG + chr1_3:54251759-54251778 None:intergenic 55.0%
TGGCAGCAGGGTCCGTAAAA+AGG + chr1_3:54251351-54251370 None:intergenic 55.0%
! CTTCTGGATTGGGAGGATCG+GGG + chr1_3:54251405-54251424 None:intergenic 55.0%
! AATTCGGGTTCAGGGCATGC+AGG + chr1_3:54251759-54251778 None:intergenic 55.0%
TTACGGACCCTGCTGCCAAC+TGG - chr1_3:54251353-54251372 Msa0125690:CDS 60.0%
AGTCCCTCCAGTTGGCAGCA+GGG + chr1_3:54251363-54251382 None:intergenic 60.0%
TTACGGACCCTGCTGCCAAC+TGG - chr1_3:54251353-54251372 Msa0125690:CDS 60.0%
AGTCCCTCCAGTTGGCAGCA+GGG + chr1_3:54251363-54251382 None:intergenic 60.0%
GGACCCTGCTGCCAACTGGA+GGG - chr1_3:54251357-54251376 Msa0125690:CDS 65.0%
GAGTCCCTCCAGTTGGCAGC+AGG + chr1_3:54251364-54251383 None:intergenic 65.0%
GGACCCTGCTGCCAACTGGA+GGG - chr1_3:54251357-54251376 Msa0125690:CDS 65.0%
GAGTCCCTCCAGTTGGCAGC+AGG + chr1_3:54251364-54251383 None:intergenic 65.0%
CGGACCCTGCTGCCAACTGG+AGG - chr1_3:54251356-54251375 Msa0125690:CDS 70.0%
CGGACCCTGCTGCCAACTGG+AGG - chr1_3:54251356-54251375 Msa0125690:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 54250871 54252524 54250871 ID=Msa0125690;Name=Msa0125690
chr1_3 mRNA 54250871 54252524 54250871 ID=Msa0125690-mRNA-1;Parent=Msa0125690;Name=Msa0125690-mRNA-1;_AED=0.30;_eAED=0.30;_QI=34|1|1|1|1|1|3|267|370
chr1_3 exon 54250871 54251389 54250871 ID=Msa0125690-mRNA-1:exon:16741;Parent=Msa0125690-mRNA-1
chr1_3 exon 54251463 54251784 54251463 ID=Msa0125690-mRNA-1:exon:16740;Parent=Msa0125690-mRNA-1
chr1_3 exon 54251952 54252524 54251952 ID=Msa0125690-mRNA-1:exon:16739;Parent=Msa0125690-mRNA-1
chr1_3 five_prime_UTR 54252491 54252524 54252491 ID=Msa0125690-mRNA-1:five_prime_utr;Parent=Msa0125690-mRNA-1
chr1_3 CDS 54251952 54252490 54251952 ID=Msa0125690-mRNA-1:cds;Parent=Msa0125690-mRNA-1
chr1_3 CDS 54251463 54251784 54251463 ID=Msa0125690-mRNA-1:cds;Parent=Msa0125690-mRNA-1
chr1_3 CDS 54251138 54251389 54251138 ID=Msa0125690-mRNA-1:cds;Parent=Msa0125690-mRNA-1
chr1_3 three_prime_UTR 54250871 54251137 54250871 ID=Msa0125690-mRNA-1:three_prime_utr;Parent=Msa0125690-mRNA-1
Gene Sequence

>Msa0125690

ATGGAGTTAGAGGCAAGTAACGGTTCCAATTCCACATATGATAGAACAGTGGAAGTGAAAGCCTTTGAAGAATCAAAAGCCGGCGTGAAAGGCCTCTTAGAATCTGGAATATGTACGACAAAGATCCCACGCATGTTTCATTCTCCCAATTTGAACTTGATCTCCGATCATGAAAGTGAAGCATCTTCCAAGTTCAGTGTCCCTATCATAGACCTTCAAGATATAAACACTAATCCATGTTTACATGTTGAGGTACTTGAGAAGATTCGAAGTGCATGTAAGGAGTGGGGATTTTTTCAAGTGATTAATCATGGTATTCCGGTTAGTGTTTTGGATGAGATGATTAGTGGAATCCGTAGGTTTCATGAACAAGATGCTGATGCAAGGAAACCATTCTATACAAGGGATAAAAGTAAGAAAGTTCGATATTTCTCTAATGGTAGCCTTTTTACGGACCCTGCTGCCAACTGGAGGGACTCACTTTCATTTTTTGTAAGCCCCGATCCTCCCAATCCAGAAGAAATACCGCAAGTATGCAGAGACATTGTGATTGAATATTCAAAGAAAGTAAGAGCTTTAGGCCTGACAATCTTTGAGCTATTCTCAGAAGCTTTAGGCCTTGATCCTTCTTACCTTAGAGATTTGGCCTTAGATTATGGACAATTTCTCTTGTGTCACTACTATCCTGCATGCCCTGAACCCGAATTAACTATGGGAACTTCTAAGCACACCGATATTGATTTCATGACAATTCTTCTACAAGACCAGATTGGTGGTCTTCAAGTTCTTCATCAGAATCAATGGGTTGATGTTCCTCCTCTGCATGGATCTCTTGTTGTAAACATTGGTGATCTTCTGCAGCTTGTAACAAATGACATGTTCACAAGTGTTTACCATCGGGTTTTATCGAAGCATATAGGCCCTAGAGTTTCCATAGCTAGCTTCTTTGCAAACTCAGTAGAGGTTTCATCCAAGGTCCTTGGTCCAATAAAGGAATTGTTATCGGAAGAAAATCCGCCAATCTATAGGGATACTACTGTGAAAGAAGTCTTGGGACATTATTTTACAAAAGGCCTTGATGGGAACTCTTCCTTGCACCCTTTCAGGTTGTGA
Protein sequence

>Msa0125690

MELEASNGSNSTYDRTVEVKAFEESKAGVKGLLESGICTTKIPRMFHSPNLNLISDHESEASSKFSVPIIDLQDINTNPCLHVEVLEKIRSACKEWGFFQVINHGIPVSVLDEMISGIRRFHEQDADARKPFYTRDKSKKVRYFSNGSLFTDPAANWRDSLSFFVSPDPPNPEEIPQVCRDIVIEYSKKVRALGLTIFELFSEALGLDPSYLRDLALDYGQFLLCHYYPACPEPELTMGTSKHTDIDFMTILLQDQIGGLQVLHQNQWVDVPPLHGSLVVNIGDLLQLVTNDMFTSVYHRVLSKHIGPRVSIASFFANSVEVSSKVLGPIKELLSEENPPIYRDTTVKEVLGHYFTKGLDGNSSLHPFRL*