Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705550 | O82515.1 | 100.000 | 118 | 0 | 0 | 1 | 118 | 242 | 359 | 3.83e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705550 | sp|O82515|MTDH_MEDSA | 100.000 | 118 | 0 | 0 | 1 | 118 | 242 | 359 | 4.78e-79 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705550 | Q53X16 | 100.000 | 118 | 0 | 0 | 1 | 118 | 242 | 359 | 1.83e-76 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0705550 | 0.818757 | 1.659491e-52 | -8.615850e-47 |
| Msa0017120 | Msa0705550 | 0.803081 | 4.133429e-49 | -8.615850e-47 |
| Msa0039200 | Msa0705550 | 0.809373 | 1.954233e-50 | -8.615850e-47 |
| Msa0050360 | Msa0705550 | 0.823089 | 1.670681e-53 | -8.615850e-47 |
| Msa0056040 | Msa0705550 | 0.801983 | 6.960101e-49 | -8.615850e-47 |
| Msa0057260 | Msa0705550 | 0.823372 | 1.435416e-53 | -8.615850e-47 |
| Msa0057740 | Msa0705550 | 0.816621 | 5.033140e-52 | -8.615850e-47 |
| Msa0059960 | Msa0705550 | -0.821286 | 4.378137e-53 | -8.615850e-47 |
| Msa0065390 | Msa0705550 | 0.806418 | 8.304208e-50 | -8.615850e-47 |
| Msa0075850 | Msa0705550 | 0.832158 | 1.108563e-55 | -8.615850e-47 |
| Msa0077630 | Msa0705550 | -0.826422 | 2.736976e-54 | -8.615850e-47 |
| Msa0077660 | Msa0705550 | -0.815098 | 1.100356e-51 | -8.615850e-47 |
| Msa0083570 | Msa0705550 | 0.801207 | 1.003838e-48 | -8.615850e-47 |
| Msa0086820 | Msa0705550 | 0.803814 | 2.912890e-49 | -8.615850e-47 |
| Msa0089210 | Msa0705550 | 0.800341 | 1.508628e-48 | -8.615850e-47 |
| Msa0094420 | Msa0705550 | 0.825819 | 3.807032e-54 | -8.615850e-47 |
| Msa0103060 | Msa0705550 | 0.815416 | 9.351685e-52 | -8.615850e-47 |
| Msa0110710 | Msa0705550 | 0.805879 | 1.078548e-49 | -8.615850e-47 |
| Msa0606060 | Msa0705550 | 0.813180 | 2.915662e-51 | -8.615850e-47 |
| Msa0614230 | Msa0705550 | 0.802971 | 4.354551e-49 | -8.615850e-47 |
| Msa0619060 | Msa0705550 | 0.811333 | 7.377675e-51 | -8.615850e-47 |
| Msa0619330 | Msa0705550 | 0.810325 | 1.219382e-50 | -8.615850e-47 |
| Msa0619480 | Msa0705550 | 0.803664 | 3.129489e-49 | -8.615850e-47 |
| Msa0619930 | Msa0705550 | 0.806145 | 9.480287e-50 | -8.615850e-47 |
| Msa0621770 | Msa0705550 | 0.824406 | 8.211565e-54 | -8.615850e-47 |
| Msa0622390 | Msa0705550 | 0.829856 | 4.073942e-55 | -8.615850e-47 |
| Msa0624240 | Msa0705550 | 0.816191 | 6.281395e-52 | -8.615850e-47 |
| Msa0635990 | Msa0705550 | 0.814927 | 1.200371e-51 | -8.615850e-47 |
| Msa0638040 | Msa0705550 | 0.801932 | 7.128563e-49 | -8.615850e-47 |
| Msa0640880 | Msa0705550 | 0.838732 | 2.414694e-57 | -8.615850e-47 |
| Msa0653710 | Msa0705550 | 0.819737 | 9.926401e-53 | -8.615850e-47 |
| Msa0659070 | Msa0705550 | 0.811362 | 7.270910e-51 | -8.615850e-47 |
| Msa0659100 | Msa0705550 | 0.827014 | 1.976991e-54 | -8.615850e-47 |
| Msa0659640 | Msa0705550 | 0.830700 | 2.533717e-55 | -8.615850e-47 |
| Msa0679270 | Msa0705550 | 0.820586 | 6.342705e-53 | -8.615850e-47 |
| Msa0686610 | Msa0705550 | 0.809007 | 2.340147e-50 | -8.615850e-47 |
| Msa0698860 | Msa0705550 | 0.804956 | 1.684067e-49 | -8.615850e-47 |
| Msa0698880 | Msa0705550 | 0.802336 | 5.889464e-49 | -8.615850e-47 |
| Msa0702070 | Msa0705550 | 0.813867 | 2.059448e-51 | -8.615850e-47 |
| Msa0702120 | Msa0705550 | 0.807981 | 3.875115e-50 | -8.615850e-47 |
| Msa0705550 | Msa0706380 | 0.805146 | 1.536602e-49 | -8.615850e-47 |
| Msa0705550 | Msa0706410 | 0.829473 | 5.046402e-55 | -8.615850e-47 |
| Msa0705550 | Msa0725480 | -0.805434 | 1.337425e-49 | -8.615850e-47 |
| Msa0705550 | Msa0736330 | 0.829592 | 4.723281e-55 | -8.615850e-47 |
| Msa0705550 | Msa0739570 | 0.801530 | 8.620550e-49 | -8.615850e-47 |
| Msa0705550 | Msa0739610 | 0.810968 | 8.854433e-51 | -8.615850e-47 |
| Msa0705550 | Msa0766100 | -0.800076 | 1.707373e-48 | -8.615850e-47 |
| Msa0705550 | Msa0766880 | 0.812715 | 3.687385e-51 | -8.615850e-47 |
| Msa0705550 | Msa0772210 | 0.829612 | 4.668838e-55 | -8.615850e-47 |
| Msa0705550 | Msa0778060 | 0.823658 | 1.230189e-53 | -8.615850e-47 |
| Msa0705550 | Msa0793060 | 0.824628 | 7.283162e-54 | -8.615850e-47 |
| Msa0705550 | Msa0799710 | 0.804273 | 2.338283e-49 | -8.615850e-47 |
| Msa0705550 | Msa0804930 | 0.808280 | 3.346416e-50 | -8.615850e-47 |
| Msa0705550 | Msa0820670 | 0.814548 | 1.456489e-51 | -8.615850e-47 |
| Msa0705550 | Msa0821490 | 0.801718 | 7.890198e-49 | -8.615850e-47 |
| Msa0705550 | Msa0824770 | 0.804410 | 2.188926e-49 | -8.615850e-47 |
| Msa0705550 | Msa0834160 | 0.801005 | 1.103918e-48 | -8.615850e-47 |
| Msa0705550 | Msa0850630 | -0.816940 | 4.266595e-52 | -8.615850e-47 |
| Msa0705550 | Msa0855490 | 0.823551 | 1.303088e-53 | -8.615850e-47 |
| Msa0705550 | Msa0886980 | 0.805561 | 1.258035e-49 | -8.615850e-47 |
| Msa0705550 | Msa0906720 | 0.800543 | 1.371608e-48 | -8.615850e-47 |
| Msa0705550 | Msa0975910 | 0.800562 | 1.359625e-48 | -8.615850e-47 |
| Msa0705550 | Msa0992570 | 0.810716 | 1.003846e-50 | -8.615850e-47 |
| Msa0705550 | Msa0992590 | 0.809193 | 2.135937e-50 | -8.615850e-47 |
| Msa0705550 | Msa1001780 | 0.809601 | 1.745383e-50 | -8.615850e-47 |
| Msa0705550 | Msa1002040 | 0.800181 | 1.625756e-48 | -8.615850e-47 |
| Msa0705550 | Msa1024580 | 0.829156 | 6.026557e-55 | -8.615850e-47 |
| Msa0705550 | Msa1030280 | 0.802491 | 5.471716e-49 | -8.615850e-47 |
| Msa0705550 | Msa1030430 | 0.805947 | 1.043866e-49 | -8.615850e-47 |
| Msa0705550 | Msa1037060 | -0.829229 | 5.785630e-55 | -8.615850e-47 |
| Msa0705550 | Msa1063180 | 0.834044 | 3.763118e-56 | -8.615850e-47 |
| Msa0705550 | Msa1069600 | 0.801272 | 9.739085e-49 | -8.615850e-47 |
| Msa0705550 | Msa1077940 | -0.811189 | 7.929492e-51 | -8.615850e-47 |
| Msa0705550 | Msa1108530 | 0.811836 | 5.736391e-51 | -8.615850e-47 |
| Msa0705550 | Msa1123340 | 0.815049 | 1.128114e-51 | -8.615850e-47 |
| Msa0705550 | Msa1138600 | 0.824276 | 8.812344e-54 | -8.615850e-47 |
| Msa0705550 | Msa1152280 | 0.806194 | 9.261917e-50 | -8.615850e-47 |
| Msa0705550 | Msa1157160 | 0.819668 | 1.029134e-52 | -8.615850e-47 |
| Msa0705550 | Msa1164800 | -0.824458 | 7.983905e-54 | -8.615850e-47 |
| Msa0705550 | Msa1166180 | 0.806416 | 8.312434e-50 | -8.615850e-47 |
| Msa0705550 | Msa1166280 | 0.806459 | 8.141383e-50 | -8.615850e-47 |
| Msa0705550 | Msa1168840 | 0.816265 | 6.044663e-52 | -8.615850e-47 |
| Msa0705550 | Msa1173410 | 0.821152 | 4.699678e-53 | -8.615850e-47 |
| Msa0705550 | Msa1195860 | 0.829292 | 5.585531e-55 | -8.615850e-47 |
| Msa0705550 | Msa1198420 | 0.815553 | 8.715937e-52 | -8.615850e-47 |
| Msa0705550 | Msa1208070 | 0.821423 | 4.070171e-53 | -8.615850e-47 |
| Msa0705550 | Msa1208510 | 0.815642 | 8.325207e-52 | -8.615850e-47 |
| Msa0705550 | Msa1220450 | -0.808904 | 2.462740e-50 | -8.615850e-47 |
| Msa0705550 | Msa1220460 | -0.811238 | 7.738325e-51 | -8.615850e-47 |
| Msa0705550 | Msa1220480 | -0.808828 | 2.556127e-50 | -8.615850e-47 |
| Msa0705550 | Msa1221570 | -0.831292 | 1.813224e-55 | -8.615850e-47 |
| Msa0705550 | Msa1232860 | 0.801912 | 7.197405e-49 | -8.615850e-47 |
| Msa0705550 | Msa1246420 | 0.827584 | 1.443186e-54 | -8.615850e-47 |
| Msa0705550 | Msa1254770 | 0.822451 | 2.352462e-53 | -8.615850e-47 |
| Msa0705550 | Msa1254800 | 0.828194 | 1.029185e-54 | -8.615850e-47 |
| Msa0705550 | Msa1256280 | 0.815127 | 1.084051e-51 | -8.615850e-47 |
| Msa0705550 | Msa1258810 | 0.800995 | 1.109435e-48 | -8.615850e-47 |
| Msa0705550 | Msa1264140 | 0.801453 | 8.940840e-49 | -8.615850e-47 |
| Msa0705550 | Msa1275290 | 0.802700 | 4.953038e-49 | -8.615850e-47 |
| Msa0705550 | Msa1298740 | 0.802514 | 5.412324e-49 | -8.615850e-47 |
| Msa0705550 | Msa1310300 | 0.829565 | 4.793749e-55 | -8.615850e-47 |
| Msa0705550 | Msa1327820 | 0.838215 | 3.281767e-57 | -8.615850e-47 |
| Msa0705550 | Msa1330240 | 0.811814 | 5.799607e-51 | -8.615850e-47 |
| Msa0705550 | Msa1337190 | 0.803644 | 3.159444e-49 | -8.615850e-47 |
| Msa0705550 | Msa1343540 | 0.812378 | 4.369611e-51 | -8.615850e-47 |
| Msa0705550 | Msa1352290 | 0.808569 | 2.904143e-50 | -8.615850e-47 |
| Msa0705550 | Msa1354040 | 0.804854 | 1.768494e-49 | -8.615850e-47 |
| Msa0705550 | Msa1355260 | 0.804662 | 1.939986e-49 | -8.615850e-47 |
| Msa0705550 | Msa1369860 | 0.813542 | 2.428463e-51 | -8.615850e-47 |
| Msa0705550 | Msa1387090 | 0.801924 | 7.156421e-49 | -8.615850e-47 |
| Msa0705550 | Msa1394370 | -0.810142 | 1.335271e-50 | -8.615850e-47 |
| Msa0705550 | Msa1397540 | 0.805635 | 1.213475e-49 | -8.615850e-47 |
| Msa0705550 | Msa1400700 | -0.813862 | 2.064310e-51 | -8.615850e-47 |
| Msa0705550 | Msa1406230 | 0.851573 | 8.128951e-61 | -8.615850e-47 |
| Msa0705550 | Msa1415120 | 0.808127 | 3.608232e-50 | -8.615850e-47 |
| Msa0705550 | Msa1426870 | 0.840322 | 9.326427e-58 | -8.615850e-47 |
| Msa0705550 | Msa1435470 | 0.801734 | 7.830435e-49 | -8.615850e-47 |
| Msa0705550 | Msa1451780 | 0.809273 | 2.052819e-50 | -8.615850e-47 |
| Msa0705550 | Msa1458920 | 0.829578 | 4.760064e-55 | -8.615850e-47 |
| Msa0123940 | Msa0705550 | 0.809853 | 1.540733e-50 | -8.615850e-47 |
| Msa0133670 | Msa0705550 | 0.813522 | 2.452627e-51 | -8.615850e-47 |
| Msa0133880 | Msa0705550 | 0.811816 | 5.795073e-51 | -8.615850e-47 |
| Msa0157320 | Msa0705550 | -0.827943 | 1.183234e-54 | -8.615850e-47 |
| Msa0184120 | Msa0705550 | 0.813075 | 3.074819e-51 | -8.615850e-47 |
| Msa0185390 | Msa0705550 | 0.802482 | 5.494373e-49 | -8.615850e-47 |
| Msa0194570 | Msa0705550 | 0.807274 | 5.475595e-50 | -8.615850e-47 |
| Msa0222070 | Msa0705550 | 0.854048 | 1.595693e-61 | -8.615850e-47 |
| Msa0222120 | Msa0705550 | 0.855364 | 6.631273e-62 | -8.615850e-47 |
| Msa0224700 | Msa0705550 | 0.814201 | 1.738465e-51 | -8.615850e-47 |
| Msa0227290 | Msa0705550 | 0.850345 | 1.803390e-60 | -8.615850e-47 |
| Msa0227490 | Msa0705550 | 0.824693 | 7.028057e-54 | -8.615850e-47 |
| Msa0227500 | Msa0705550 | 0.804686 | 1.917621e-49 | -8.615850e-47 |
| Msa0377460 | Msa0705550 | 0.800581 | 1.347439e-48 | -8.615850e-47 |
| Msa0378340 | Msa0705550 | 0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0379900 | Msa0705550 | 0.813006 | 3.184400e-51 | -8.615850e-47 |
| Msa0380060 | Msa0705550 | 0.813103 | 3.032471e-51 | -8.615850e-47 |
| Msa0421800 | Msa0705550 | 0.816847 | 4.477150e-52 | -8.615850e-47 |
| Msa0426860 | Msa0705550 | 0.841903 | 3.583686e-58 | -8.615850e-47 |
| Msa0426890 | Msa0705550 | 0.821261 | 4.435001e-53 | -8.615850e-47 |
| Msa0427050 | Msa0705550 | 0.831753 | 1.396127e-55 | -8.615850e-47 |
| Msa0427520 | Msa0705550 | -0.802986 | 4.324581e-49 | -8.615850e-47 |
| Msa0429050 | Msa0705550 | -0.823040 | 1.715573e-53 | -8.615850e-47 |
| Msa0429070 | Msa0705550 | -0.809287 | 2.038968e-50 | -8.615850e-47 |
| Msa0429270 | Msa0705550 | 0.819040 | 1.431259e-52 | -8.615850e-47 |
| Msa0456480 | Msa0705550 | 0.813130 | 2.990957e-51 | -8.615850e-47 |
| Msa0458790 | Msa0705550 | 0.802033 | 6.798281e-49 | -8.615850e-47 |
| Msa0470350 | Msa0705550 | -0.808883 | 2.488540e-50 | -8.615850e-47 |
| Msa0473940 | Msa0705550 | -0.802105 | 6.568351e-49 | -8.615850e-47 |
| Msa0480010 | Msa0705550 | 0.803317 | 3.693276e-49 | -8.615850e-47 |
| Msa0253410 | Msa0705550 | 0.812519 | 4.069838e-51 | -8.615850e-47 |
| Msa0256170 | Msa0705550 | 0.817307 | 3.529376e-52 | -8.615850e-47 |
| Msa0257130 | Msa0705550 | 0.803439 | 3.483855e-49 | -8.615850e-47 |
| Msa0257930 | Msa0705550 | -0.810580 | 1.073954e-50 | -8.615850e-47 |
| Msa0263430 | Msa0705550 | 0.800228 | 1.590667e-48 | -8.615850e-47 |
| Msa0263620 | Msa0705550 | 0.855814 | 4.901578e-62 | -8.615850e-47 |
| Msa0288270 | Msa0705550 | 0.809299 | 2.026481e-50 | -8.615850e-47 |
| Msa0291040 | Msa0705550 | 0.828648 | 8.000651e-55 | -8.615850e-47 |
| Msa0295520 | Msa0705550 | 0.860674 | 1.752013e-63 | -8.615850e-47 |
| Msa0301180 | Msa0705550 | 0.809651 | 1.703406e-50 | -8.615850e-47 |
| Msa0301460 | Msa0705550 | 0.824067 | 9.867347e-54 | -8.615850e-47 |
| Msa0303780 | Msa0705550 | 0.803817 | 2.909169e-49 | -8.615850e-47 |
| Msa0304870 | Msa0705550 | 0.804240 | 2.375284e-49 | -8.615850e-47 |
| Msa0314790 | Msa0705550 | 0.802241 | 6.159176e-49 | -8.615850e-47 |
| Msa0314980 | Msa0705550 | 0.805852 | 1.092774e-49 | -8.615850e-47 |
| Msa0320540 | Msa0705550 | 0.836556 | 8.732981e-57 | -8.615850e-47 |
| Msa0331780 | Msa0705550 | 0.845522 | 3.854054e-59 | -8.615850e-47 |
| Msa0341260 | Msa0705550 | 0.803647 | 3.155077e-49 | -8.615850e-47 |
| Msa0344070 | Msa0705550 | 0.826067 | 3.324975e-54 | -8.615850e-47 |
| Msa0514260 | Msa0705550 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
| Msa0518340 | Msa0705550 | -0.805598 | 1.235742e-49 | -8.615850e-47 |
| Msa0524090 | Msa0705550 | 0.828167 | 1.044859e-54 | -8.615850e-47 |
| Msa0524120 | Msa0705550 | 0.822810 | 1.941411e-53 | -8.615850e-47 |
| Msa0537870 | Msa0705550 | 0.802017 | 6.847165e-49 | -8.615850e-47 |
| Msa0537880 | Msa0705550 | 0.801078 | 1.066635e-48 | -8.615850e-47 |
| Msa0544780 | Msa0705550 | 0.827467 | 1.539226e-54 | -8.615850e-47 |
| Msa0576420 | Msa0705550 | 0.813223 | 2.854166e-51 | -8.615850e-47 |
| Msa0594180 | Msa0705550 | 0.805193 | 1.502255e-49 | -8.615850e-47 |
| Msa0595780 | Msa0705550 | 0.814818 | 1.269422e-51 | -8.615850e-47 |
| Msa0600390 | Msa0705550 | 0.838622 | 2.578562e-57 | -8.615850e-47 |
| Msa0601780 | Msa0705550 | 0.817248 | 3.639015e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705550 | MtrunA17_Chr8g0383721 | 95.763 | 118 | 5 | 0 | 1 | 118 | 242 | 359 | 6.56e-64 | 197 |
| Msa0705550 | MtrunA17_Chr5g0411801 | 69.298 | 114 | 35 | 0 | 1 | 114 | 275 | 388 | 5.10e-50 | 163 |
| Msa0705550 | MtrunA17_Chr5g0411931 | 65.812 | 117 | 40 | 0 | 1 | 117 | 243 | 359 | 7.20e-50 | 162 |
| Msa0705550 | MtrunA17_Chr5g0411821 | 63.478 | 115 | 42 | 0 | 1 | 115 | 243 | 357 | 2.53e-49 | 161 |
| Msa0705550 | MtrunA17_Chr4g0064291 | 67.544 | 114 | 37 | 0 | 1 | 114 | 243 | 356 | 2.76e-49 | 160 |
| Msa0705550 | MtrunA17_Chr5g0411901 | 65.217 | 115 | 40 | 0 | 1 | 115 | 244 | 358 | 8.25e-49 | 159 |
| Msa0705550 | MtrunA17_Chr5g0411811 | 62.609 | 115 | 43 | 0 | 1 | 115 | 243 | 357 | 4.30e-48 | 157 |
| Msa0705550 | MtrunA17_Chr5g0411841 | 66.087 | 115 | 39 | 0 | 1 | 115 | 243 | 357 | 5.56e-48 | 157 |
| Msa0705550 | MtrunA17_Chr5g0411881 | 63.158 | 114 | 42 | 0 | 2 | 115 | 245 | 358 | 6.35e-46 | 151 |
| Msa0705550 | MtrunA17_Chr5g0411911 | 63.158 | 114 | 42 | 0 | 1 | 114 | 245 | 358 | 2.72e-45 | 150 |
| Msa0705550 | MtrunA17_Chr8g0367151 | 64.957 | 117 | 41 | 0 | 1 | 117 | 243 | 359 | 1.32e-42 | 143 |
| Msa0705550 | MtrunA17_Chr5g0411791 | 64.103 | 117 | 42 | 0 | 1 | 117 | 217 | 333 | 2.34e-41 | 139 |
| Msa0705550 | MtrunA17_Chr5g0411871 | 53.509 | 114 | 53 | 0 | 1 | 114 | 258 | 371 | 2.45e-41 | 140 |
| Msa0705550 | MtrunA17_Chr5g0411941 | 61.404 | 114 | 44 | 0 | 2 | 115 | 244 | 357 | 4.98e-41 | 139 |
| Msa0705550 | MtrunA17_Chr1g0157021 | 62.281 | 114 | 43 | 0 | 1 | 114 | 243 | 356 | 2.59e-40 | 137 |
| Msa0705550 | MtrunA17_Chr1g0208031 | 49.123 | 114 | 56 | 2 | 2 | 114 | 242 | 354 | 1.36e-29 | 108 |
| Msa0705550 | MtrunA17_Chr2g0279791 | 48.649 | 111 | 56 | 1 | 5 | 115 | 296 | 405 | 6.45e-28 | 105 |
| Msa0705550 | MtrunA17_Chr5g0411861 | 61.905 | 63 | 24 | 0 | 55 | 117 | 1 | 63 | 1.05e-26 | 94.0 |
| Msa0705550 | MtrunA17_Chr2g0279801 | 46.491 | 114 | 49 | 2 | 2 | 114 | 110 | 212 | 5.39e-23 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705550 | AT4G39330.1 | 81.034 | 116 | 22 | 0 | 1 | 116 | 243 | 358 | 1.57e-64 | 199 |
| Msa0705550 | AT2G21730.1 | 71.053 | 114 | 33 | 0 | 2 | 115 | 240 | 353 | 1.19e-55 | 177 |
| Msa0705550 | AT2G21890.1 | 70.175 | 114 | 34 | 0 | 2 | 115 | 239 | 352 | 4.04e-54 | 173 |
| Msa0705550 | AT4G37970.1 | 61.538 | 117 | 45 | 0 | 1 | 117 | 244 | 360 | 3.84e-47 | 155 |
| Msa0705550 | AT4G37980.1 | 73.451 | 113 | 30 | 0 | 2 | 114 | 240 | 352 | 2.84e-46 | 152 |
| Msa0705550 | AT4G37990.1 | 72.807 | 114 | 31 | 0 | 2 | 115 | 240 | 353 | 3.06e-45 | 150 |
| Msa0705550 | AT4G34230.1 | 51.818 | 110 | 53 | 0 | 5 | 114 | 244 | 353 | 7.63e-34 | 120 |
| Msa0705550 | AT4G34230.2 | 50.909 | 110 | 54 | 0 | 5 | 114 | 244 | 353 | 6.22e-33 | 118 |
| Msa0705550 | AT3G19450.1 | 53.153 | 111 | 50 | 2 | 5 | 114 | 245 | 354 | 3.57e-32 | 116 |
| Msa0705550 | AT1G72680.1 | 45.946 | 111 | 59 | 1 | 5 | 115 | 245 | 354 | 1.68e-28 | 106 |
| Msa0705550 | AT4G39330.2 | 76.271 | 59 | 14 | 0 | 1 | 59 | 243 | 301 | 3.20e-25 | 97.1 |
| Msa0705550 | AT4G37970.4 | 63.462 | 52 | 19 | 0 | 1 | 52 | 244 | 295 | 3.66e-15 | 69.7 |
| Msa0705550 | AT4G37980.2 | 69.091 | 55 | 17 | 0 | 2 | 56 | 240 | 294 | 1.34e-11 | 60.1 |
Find 34 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTCTTTCCATTAGTTGC+AGG | 0.301516 | 4_4:+78307804 | Msa0705550:CDS |
| GTAGACCAAGCAGTGGCATC+AGG | 0.373980 | 4_4:-78307725 | None:intergenic |
| GATGGTTTACCTGCAACTAA+TGG | 0.378875 | 4_4:-78307813 | None:intergenic |
| ACAAAGCTGATGTGAAATAT+CGG | 0.393376 | 4_4:+78308191 | Msa0705550:CDS |
| ACTGAAGTTGAATGGGAAAC+TGG | 0.399835 | 4_4:+78307746 | Msa0705550:CDS |
| ACTGCAGGACGGAAGCTTAT+CGG | 0.411894 | 4_4:+78308043 | Msa0705550:intron |
| CATTCCCTGATGCCACTGCT+TGG | 0.448606 | 4_4:+78307720 | Msa0705550:CDS |
| GAGAGCTCAAGGGGCTTGCT+AGG | 0.495481 | 4_4:-78307783 | None:intergenic |
| CTTGGTCTACTGAAGTTGAA+TGG | 0.496517 | 4_4:+78307738 | Msa0705550:CDS |
| TTGGTCTACTGAAGTTGAAT+GGG | 0.524981 | 4_4:+78307739 | Msa0705550:CDS |
| AGCTTTGTGAAGCCTTTCCA+TGG | 0.525881 | 4_4:-78308176 | None:intergenic |
| GCATGAAATCAACACGGCCA+TGG | 0.534341 | 4_4:+78308159 | Msa0705550:CDS |
| ATGGAAAGACAGAGAGCTCA+AGG | 0.539760 | 4_4:-78307794 | None:intergenic |
| AAATCAACACGGCCATGGAA+AGG | 0.552965 | 4_4:+78308164 | Msa0705550:CDS |
| CTTATCGGAGGGAGTAACAT+TGG | 0.554132 | 4_4:+78308058 | Msa0705550:CDS |
| AATGGGAAACTGGTCACTGT+AGG | 0.556394 | 4_4:+78307756 | Msa0705550:CDS |
| TGGAGGGATGAAAGAGACTC+AGG | 0.563071 | 4_4:+78308078 | Msa0705550:CDS |
| CTACAAACTTGAGAAGGAGT+TGG | 0.582204 | 4_4:-78308230 | None:intergenic |
| GCAGGCTGCTATGGGAACCA+TGG | 0.590820 | 4_4:+78307668 | None:intergenic |
| TGGCCTCTACAAACTTGAGA+AGG | 0.595694 | 4_4:-78308236 | None:intergenic |
| TGGAAAGACAGAGAGCTCAA+GGG | 0.604195 | 4_4:-78307793 | None:intergenic |
| TCGGAGGGAGTAACATTGGA+GGG | 0.606287 | 4_4:+78308062 | Msa0705550:CDS |
| TAGACCAAGCAGTGGCATCA+GGG | 0.607212 | 4_4:-78307724 | None:intergenic |
| ATCGGAGGGAGTAACATTGG+AGG | 0.607417 | 4_4:+78308061 | Msa0705550:CDS |
| ACTCCTTCTCAAGTTTGTAG+AGG | 0.609994 | 4_4:+78308233 | Msa0705550:CDS |
| GGAAAGACAGAGAGCTCAAG+GGG | 0.626737 | 4_4:-78307792 | None:intergenic |
| ATGGGAAACTGGTCACTGTA+GGG | 0.633427 | 4_4:+78307757 | Msa0705550:CDS |
| TGTGTCTATGATGTAGTCCA+TGG | 0.640415 | 4_4:-78307685 | None:intergenic |
| CAGGAGATGCTCGATTTCTG+CGG | 0.641521 | 4_4:+78308097 | Msa0705550:CDS |
| GCAGGACGGAAGCTTATCGG+AGG | 0.666483 | 4_4:+78308046 | Msa0705550:intron |
| CAGGACGGAAGCTTATCGGA+GGG | 0.671442 | 4_4:+78308047 | Msa0705550:intron |
| ATATCGGTTTGTGATTGATG+TGG | 0.686371 | 4_4:+78308207 | Msa0705550:CDS |
| AACTTCAGTAGACCAAGCAG+TGG | 0.689529 | 4_4:-78307732 | None:intergenic |
| TAAGATGCATGAAATCAACA+CGG | 0.753982 | 4_4:+78308153 | Msa0705550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCAAATTCACATATTA+TGG | - | chr4_4:78307865-78307884 | None:intergenic | 20.0% |
| !! | TGAAAATTTGGATAATTCAT+TGG | - | chr4_4:78308007-78308026 | None:intergenic | 20.0% |
| ! | AATTGACAGAGAATTATTGA+TGG | - | chr4_4:78307834-78307853 | None:intergenic | 25.0% |
| ! | ACATTAGACATGTGAAAATT+TGG | - | chr4_4:78308019-78308038 | None:intergenic | 25.0% |
| ! | TAAATGTTTCAGGTCAGATT+TGG | - | chr4_4:78307919-78307938 | None:intergenic | 30.0% |
| TGAGCATGTATAAATGTTTC+AGG | - | chr4_4:78307929-78307948 | None:intergenic | 30.0% | |
| TAAGATGCATGAAATCAACA+CGG | + | chr4_4:78308153-78308172 | Msa0705550:CDS | 30.0% | |
| ACAAAGCTGATGTGAAATAT+CGG | + | chr4_4:78308191-78308210 | Msa0705550:CDS | 30.0% | |
| TTGGTCTACTGAAGTTGAAT+GGG | + | chr4_4:78307739-78307758 | Msa0705550:CDS | 35.0% | |
| !! | ATATCGGTTTGTGATTGATG+TGG | + | chr4_4:78308207-78308226 | Msa0705550:CDS | 35.0% |
| TGTGTCTATGATGTAGTCCA+TGG | - | chr4_4:78307688-78307707 | None:intergenic | 40.0% | |
| CTTGGTCTACTGAAGTTGAA+TGG | + | chr4_4:78307738-78307757 | Msa0705550:CDS | 40.0% | |
| ACTGAAGTTGAATGGGAAAC+TGG | + | chr4_4:78307746-78307765 | Msa0705550:CDS | 40.0% | |
| TCTGTCTTTCCATTAGTTGC+AGG | + | chr4_4:78307804-78307823 | Msa0705550:CDS | 40.0% | |
| GATGGTTTACCTGCAACTAA+TGG | - | chr4_4:78307816-78307835 | None:intergenic | 40.0% | |
| GGAAGTAACAGACTCATTCT+TGG | - | chr4_4:78307898-78307917 | None:intergenic | 40.0% | |
| ATGTCTAATGTCTTGACTGC+AGG | + | chr4_4:78308028-78308047 | Msa0705550:intron | 40.0% | |
| CTACAAACTTGAGAAGGAGT+TGG | - | chr4_4:78308233-78308252 | None:intergenic | 40.0% | |
| AACTTCAGTAGACCAAGCAG+TGG | - | chr4_4:78307735-78307754 | None:intergenic | 45.0% | |
| AATGGGAAACTGGTCACTGT+AGG | + | chr4_4:78307756-78307775 | Msa0705550:CDS | 45.0% | |
| ATGGGAAACTGGTCACTGTA+GGG | + | chr4_4:78307757-78307776 | Msa0705550:CDS | 45.0% | |
| TGGAAAGACAGAGAGCTCAA+GGG | - | chr4_4:78307796-78307815 | None:intergenic | 45.0% | |
| ATGGAAAGACAGAGAGCTCA+AGG | - | chr4_4:78307797-78307816 | None:intergenic | 45.0% | |
| CTAATGTCTTGACTGCAGGA+CGG | + | chr4_4:78308032-78308051 | Msa0705550:intron | 45.0% | |
| CTTATCGGAGGGAGTAACAT+TGG | + | chr4_4:78308058-78308077 | Msa0705550:CDS | 45.0% | |
| AAATCAACACGGCCATGGAA+AGG | + | chr4_4:78308164-78308183 | Msa0705550:CDS | 45.0% | |
| ! | AGCTTTGTGAAGCCTTTCCA+TGG | - | chr4_4:78308179-78308198 | None:intergenic | 45.0% |
| TAGACCAAGCAGTGGCATCA+GGG | - | chr4_4:78307727-78307746 | None:intergenic | 50.0% | |
| GGAAAGACAGAGAGCTCAAG+GGG | - | chr4_4:78307795-78307814 | None:intergenic | 50.0% | |
| ACTGCAGGACGGAAGCTTAT+CGG | + | chr4_4:78308043-78308062 | Msa0705550:intron | 50.0% | |
| ATCGGAGGGAGTAACATTGG+AGG | + | chr4_4:78308061-78308080 | Msa0705550:CDS | 50.0% | |
| TCGGAGGGAGTAACATTGGA+GGG | + | chr4_4:78308062-78308081 | Msa0705550:CDS | 50.0% | |
| TGGAGGGATGAAAGAGACTC+AGG | + | chr4_4:78308078-78308097 | Msa0705550:CDS | 50.0% | |
| CAGGAGATGCTCGATTTCTG+CGG | + | chr4_4:78308097-78308116 | Msa0705550:CDS | 50.0% | |
| GCATGAAATCAACACGGCCA+TGG | + | chr4_4:78308159-78308178 | Msa0705550:CDS | 50.0% | |
| CATTCCCTGATGCCACTGCT+TGG | + | chr4_4:78307720-78307739 | Msa0705550:CDS | 55.0% | |
| GTAGACCAAGCAGTGGCATC+AGG | - | chr4_4:78307728-78307747 | None:intergenic | 55.0% | |
| CAGGACGGAAGCTTATCGGA+GGG | + | chr4_4:78308047-78308066 | Msa0705550:intron | 55.0% | |
| ! | GAGAGCTCAAGGGGCTTGCT+AGG | - | chr4_4:78307786-78307805 | None:intergenic | 60.0% |
| GCAGGACGGAAGCTTATCGG+AGG | + | chr4_4:78308046-78308065 | Msa0705550:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78307672 | 78308252 | 78307672 | ID=Msa0705550;Name=Msa0705550 |
| chr4_4 | mRNA | 78307672 | 78308252 | 78307672 | ID=Msa0705550-mRNA-1;Parent=Msa0705550;Name=Msa0705550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|118 |
| chr4_4 | exon | 78307672 | 78307825 | 78307672 | ID=Msa0705550-mRNA-1:exon:24967;Parent=Msa0705550-mRNA-1 |
| chr4_4 | exon | 78308050 | 78308252 | 78308050 | ID=Msa0705550-mRNA-1:exon:24968;Parent=Msa0705550-mRNA-1 |
| chr4_4 | CDS | 78307672 | 78307825 | 78307672 | ID=Msa0705550-mRNA-1:cds;Parent=Msa0705550-mRNA-1 |
| chr4_4 | CDS | 78308050 | 78308252 | 78308050 | ID=Msa0705550-mRNA-1:cds;Parent=Msa0705550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
