AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078800 MtrunA17_Chr1g0189541 91.398 186 14 1 1 186 1 184 8.62e-124 346
Msa0078800 MtrunA17_Chr1g0189611 80.702 171 31 2 17 186 96 265 1.12e-96 281
Msa0078800 MtrunA17_Chr1g0189721 70.492 183 47 3 11 186 83 265 5.29e-87 256
Msa0078800 MtrunA17_Chr1g0189621 73.714 175 39 4 17 186 92 264 5.46e-83 246
Msa0078800 MtrunA17_Chr1g0189751 68.306 183 51 3 11 186 83 265 9.53e-82 244
Msa0078800 MtrunA17_Chr1g0203281 64.021 189 58 3 8 186 84 272 1.34e-78 235
Msa0078800 MtrunA17_Chr1g0189821 68.391 174 50 3 16 186 95 266 4.33e-77 231
Msa0078800 MtrunA17_Chr1g0189671 62.983 181 57 4 16 186 92 272 8.31e-71 216
Msa0078800 MtrunA17_Chr1g0203331 65.244 164 45 2 17 168 78 241 1.13e-67 206
Msa0078800 MtrunA17_Chr1g0189641 60.440 182 61 3 16 186 92 273 2.54e-66 204
Msa0078800 MtrunA17_Chr1g0190071 58.378 185 62 3 17 186 97 281 6.78e-65 201
Msa0078800 MtrunA17_Chr1g0189651 62.573 171 54 4 17 186 18 179 5.33e-61 187
Msa0078800 MtrunA17_Chr1g0157451 56.383 188 64 6 17 186 96 283 2.79e-57 182
Msa0078800 MtrunA17_Chr3g0097191 57.471 174 69 3 16 186 96 267 9.03e-57 179
Msa0078800 MtrunA17_Chr1g0189661 56.250 192 71 5 8 186 87 278 3.85e-56 179
Msa0078800 MtrunA17_Chr7g0260801 56.069 173 68 4 17 186 107 274 9.86e-54 172
Msa0078800 MtrunA17_Chr2g0317291 55.294 170 73 2 17 183 43 212 3.83e-52 166
Msa0078800 MtrunA17_Chr1g0189781 54.802 177 71 5 16 186 100 273 4.77e-52 167
Msa0078800 MtrunA17_Chr1g0188311 62.687 134 33 2 52 168 22 155 4.07e-50 159
Msa0078800 MtrunA17_Chr3g0078331 49.524 210 69 5 14 186 106 315 1.39e-48 160
Msa0078800 MtrunA17_Chr3g0095261 48.958 192 73 5 16 186 96 283 3.38e-44 148
Msa0078800 MtrunA17_Chr1g0189711 45.408 196 95 7 2 186 81 275 2.13e-41 140
Msa0078800 MtrunA17_Chr7g0272091 45.055 182 84 6 21 186 102 283 1.64e-39 135
Msa0078800 MtrunA17_Chr1g0189591 43.147 197 81 5 21 186 110 306 9.09e-39 134
Msa0078800 MtrunA17_Chr1g0189571 42.487 193 84 5 21 186 13 205 2.07e-38 130
Msa0078800 MtrunA17_Chr3g0102081 61.165 103 38 1 51 153 23 123 7.76e-37 124
Msa0078800 MtrunA17_Chr1g0192371 42.135 178 91 4 21 186 104 281 2.97e-35 124
Msa0078800 MtrunA17_Chr1g0189701 44.554 202 89 8 5 186 119 317 2.50e-34 123
Msa0078800 MtrunA17_Chr1g0189631 62.500 96 24 1 70 153 2 97 5.02e-32 111
Msa0078800 MtrunA17_Chr3g0143881 51.261 119 43 4 70 186 2 107 7.94e-30 105
Msa0078800 MtrunA17_Chr7g0272101 39.521 167 89 6 25 186 98 257 2.70e-27 103
Msa0078800 MtrunA17_Chr7g0260811 52.688 93 42 1 17 109 72 162 6.94e-23 89.7
Msa0078800 MtrunA17_Chr4g0010881 34.545 165 78 5 26 186 99 237 8.61e-19 80.9
Msa0078800 MtrunA17_Chr1g0189771 50.704 71 35 0 16 86 104 174 1.06e-16 73.9
Msa0078800 MtrunA17_Chr4g0043591 29.949 197 107 8 1 186 114 290 1.33e-16 75.9
Msa0078800 MtrunA17_Chr1g0189761 53.933 89 37 3 101 186 7 94 1.99e-12 60.5
Msa0078800 MtrunA17_Chr7g0265551 27.841 176 101 6 26 185 190 355 4.76e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078800 AT2G02360.1 43.023 172 84 6 21 185 104 268 1.65e-41 141
Msa0078800 AT1G09155.1 41.146 192 83 6 21 186 93 280 1.21e-36 129
Msa0078800 AT1G80110.1 41.379 174 94 6 16 185 86 255 1.55e-35 125
Msa0078800 AT2G02340.1 41.143 175 92 5 21 185 128 301 2.85e-33 120
Msa0078800 AT1G56240.1 40.642 187 89 7 21 185 94 280 3.18e-33 120
Msa0078800 AT1G56250.1 40.957 188 89 7 21 186 94 281 5.90e-33 119
Msa0078800 AT2G02240.1 37.870 169 98 4 21 185 151 316 2.21e-30 113
Msa0078800 AT2G02250.1 37.714 175 101 5 16 185 132 303 7.32e-30 112
Msa0078800 AT2G02300.1 32.828 198 101 6 1 186 104 281 1.98e-25 99.8
Msa0078800 AT2G02350.1 35.465 172 93 7 25 185 1 165 5.23e-25 95.9
Msa0078800 AT2G02230.1 32.075 212 98 7 21 186 122 333 2.22e-24 97.8
Msa0078800 AT2G02350.2 35.227 176 96 7 21 185 114 282 2.37e-24 97.1
Msa0078800 AT2G02310.1 32.386 176 103 5 21 186 135 304 1.55e-21 89.7
Msa0078800 AT2G02320.1 35.429 175 97 8 21 185 130 298 1.10e-19 84.7
Msa0078800 AT1G65390.1 30.769 169 92 6 25 186 260 410 9.43e-16 74.7
Msa0078800 AT1G33920.1 28.994 169 96 5 25 186 13 164 3.30e-15 70.1
Msa0078800 AT2G26820.3 28.947 190 104 8 10 185 305 477 5.07e-15 72.8
Msa0078800 AT2G26820.1 28.108 185 106 7 11 185 294 461 4.24e-14 70.1
Msa0078800 AT3G53000.1 27.778 180 98 8 25 185 118 284 6.62e-13 65.9
Msa0078800 AT2G26820.4 36.250 80 43 2 10 81 305 384 3.60e-11 61.2
Msa0078800 AT4G19840.1 28.409 176 100 8 18 186 89 245 3.69e-11 60.5

Find 69 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCTGCATATTGAGTATT+TGG 0.137691 1_2:+56487754 None:intergenic
GTTCATGGAATGTTGCTTAA+TGG 0.277473 1_2:+56487419 None:intergenic
CTACCTTCCACTTCCACATT+TGG 0.297421 1_2:+56487625 None:intergenic
TTAAGAAGTTGAGCAACTTC+AGG 0.301199 1_2:+56487826 None:intergenic
AAGCTGCATATTGAGTATTT+GGG 0.339648 1_2:+56487755 None:intergenic
TTCTCAAGCATTAGTTAGTC+AGG 0.370971 1_2:-56489314 Msa0078800:five_prime_UTR
GGGTGGTTGGAGATTGAAAT+GGG 0.384436 1_2:-56487553 Msa0078800:CDS
GTTTAAAATGATTGATGCTT+GGG 0.387779 1_2:-56487725 Msa0078800:CDS
TTGTTGAAGGAATAGAAGTT+AGG 0.389505 1_2:-56487453 Msa0078800:CDS
TAGATCTCTCAGCATTGCTT+GGG 0.393802 1_2:-56489050 Msa0078800:CDS
CCAGGCTGGCATCTTCATCT+TGG 0.395065 1_2:-56489257 Msa0078800:five_prime_UTR
CTAGATCTCTCAGCATTGCT+TGG 0.399764 1_2:-56489051 Msa0078800:CDS
TATGCAAGGGGTCTTGTGTT+TGG 0.410627 1_2:-56487396 Msa0078800:three_prime_UTR
ATGATAAGCGCTATTGGAAC+TGG 0.419916 1_2:-56489024 Msa0078800:CDS
TAGTACTAAAATTGTCTGTT+TGG 0.420764 1_2:-56487650 Msa0078800:CDS
AAGACCCCTTGCATAGTTCA+TGG 0.424562 1_2:+56487404 None:intergenic
TAGTCCGTACACGCGTAGTA+CGG 0.428915 1_2:+56489350 None:intergenic
AAGAGTGGTCTCTTTGTTGA+AGG 0.429530 1_2:-56487466 Msa0078800:CDS
GTTGCTTAATGGTCTTACTT+AGG 0.436928 1_2:+56487430 None:intergenic
CAGGTCAATATTTAAAAGAC+TGG 0.441866 1_2:-56489295 Msa0078800:five_prime_UTR
GGGGTGATGATAAGCGCTAT+TGG 0.442255 1_2:-56489030 Msa0078800:CDS
GAGTATTTGGGGACAAGCTA+AGG 0.444858 1_2:+56487767 None:intergenic
TTCAATTCAGGCTTAGAAGA+TGG 0.449517 1_2:-56487526 Msa0078800:CDS
TAAGAAGTTGAGCAACTTCA+GGG 0.455579 1_2:+56487827 None:intergenic
CAGGCTGGCATCTTCATCTT+GGG 0.461205 1_2:-56489256 Msa0078800:five_prime_UTR
TGGGTGGTTGGAGATTGAAA+TGG 0.464905 1_2:-56487554 Msa0078800:CDS
CTCAACTTCTTAAAGTGTGG+TGG 0.472753 1_2:-56487816 Msa0078800:CDS
CGTCCTAGTGTGAGAAGCGA+TGG 0.485861 1_2:-56487574 Msa0078800:CDS
AGTCCGTACACGCGTAGTAC+GGG 0.492193 1_2:+56489351 None:intergenic
TGTTTAAAATGATTGATGCT+TGG 0.498864 1_2:-56487726 Msa0078800:CDS
GTAGCTCCTTAACATTCATC+AGG 0.499214 1_2:+56487497 None:intergenic
AGACGTCCTGATGAATGTTA+AGG 0.504428 1_2:-56487503 Msa0078800:CDS
CCAAGATGAAGATGCCAGCC+TGG 0.514901 1_2:+56489257 None:intergenic
AGACAGTTCCGAGCATCAAA+AGG 0.515262 1_2:-56489203 Msa0078800:intron
AGATCAGCTAACCTGGAGTC+AGG 0.516018 1_2:+56488992 None:intergenic
TCACCCGTACTACGCGTGTA+CGG 0.518085 1_2:-56489354 Msa0078800:five_prime_UTR
GCAAGGGGTCTTGTGTTTGG+TGG 0.519713 1_2:-56487393 Msa0078800:three_prime_UTR
AACATTCCATGAACTATGCA+AGG 0.537468 1_2:-56487410 Msa0078800:three_prime_UTR
AGGCAGCATGACAGAGCAGT+AGG 0.538263 1_2:-56487604 Msa0078800:CDS
CACCCATCGCTTCTCACACT+AGG 0.543006 1_2:+56487571 None:intergenic
TCTTCATCTTGGGATACCTA+AGG 0.562627 1_2:-56489246 Msa0078800:five_prime_UTR
TTTGGATCCAAATGTGGAAG+TGG 0.569537 1_2:-56487632 Msa0078800:CDS
GTGTGGTGGCTTGATATTAG+TGG 0.570028 1_2:-56487802 Msa0078800:CDS
GGATTAATATGCCTGACTCC+AGG 0.571055 1_2:-56489003 Msa0078800:intron
TGTGAGAAGCGATGGGTGGT+TGG 0.576323 1_2:-56487566 Msa0078800:CDS
CAAATGTGGAAGTGGAAGGT+AGG 0.580778 1_2:-56487624 Msa0078800:CDS
TCTTATCTATTGTACCAGGC+TGG 0.581291 1_2:-56489271 Msa0078800:five_prime_UTR
AGTATTTGGGGACAAGCTAA+GGG 0.583185 1_2:+56487768 None:intergenic
GGGATTTGAGAACTGTCCTG+TGG 0.586144 1_2:-56487704 Msa0078800:CDS
GATCCAAATGTGGAAGTGGA+AGG 0.597012 1_2:-56487628 Msa0078800:CDS
AGCTGCATATTGAGTATTTG+GGG 0.601395 1_2:+56487756 None:intergenic
TTATCAGTTGGTGTCGAAGG+TGG 0.605148 1_2:-56487679 Msa0078800:CDS
AGATCTCTCAGCATTGCTTG+GGG 0.605794 1_2:-56489049 Msa0078800:CDS
TTGCTCAACTTCTTAAAGTG+TGG 0.607277 1_2:-56487819 Msa0078800:CDS
ACACCAACTGATAACTCCAC+AGG 0.607721 1_2:+56487688 None:intergenic
TTGGGATACCTAAGGATGTG+TGG 0.610104 1_2:-56489238 Msa0078800:exon
ACATTCCATGAACTATGCAA+GGG 0.611864 1_2:-56487409 Msa0078800:three_prime_UTR
TGGATCTTATCTATTGTACC+AGG 0.612655 1_2:-56489275 Msa0078800:five_prime_UTR
TTTAAAATGATTGATGCTTG+GGG 0.614761 1_2:-56487724 Msa0078800:CDS
GTGGTTGGAGATTGAAATGG+GGG 0.620504 1_2:-56487551 Msa0078800:CDS
GAGTTATCAGTTGGTGTCGA+AGG 0.620810 1_2:-56487682 Msa0078800:CDS
TGTCCTGTGGAGTTATCAGT+TGG 0.623846 1_2:-56487691 Msa0078800:CDS
TGTCTGTTTGGATCCAAATG+TGG 0.625217 1_2:-56487638 Msa0078800:CDS
GAGCTACATCTTTCGAAGAG+TGG 0.627137 1_2:-56487481 Msa0078800:CDS
GTCCTAGTGTGAGAAGCGAT+GGG 0.643186 1_2:-56487573 Msa0078800:CDS
GGTGGTTGGAGATTGAAATG+GGG 0.648046 1_2:-56487552 Msa0078800:CDS
CATTCCATGAACTATGCAAG+GGG 0.678010 1_2:-56487408 Msa0078800:three_prime_UTR
TGTGGTGGCTTGATATTAGT+GGG 0.681501 1_2:-56487801 Msa0078800:CDS
CTAGTGTGAGAAGCGATGGG+TGG 0.709944 1_2:-56487570 Msa0078800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTAAATAAAATAATGGAAT+GGG + chr1_2:56488313-56488332 None:intergenic 15.0%
!!! AGTAAATAAAATAATGGAAT+GGG + chr1_2:56488313-56488332 None:intergenic 15.0%
!!! TTTAGTTTAGAATGCTAATA+AGG - chr1_2:56487570-56487589 Msa0078800:CDS 20.0%
!! TTAAGTTAATCAAGACATAT+TGG + chr1_2:56487790-56487809 None:intergenic 20.0%
!!! TTAAGATTTTTTGCTTAGAA+TGG - chr1_2:56487860-56487879 Msa0078800:intron 20.0%
!! CAATGAAAAATATATAGGAT+TGG + chr1_2:56488098-56488117 None:intergenic 20.0%
!! TGATGCAATGAAAAATATAT+AGG + chr1_2:56488103-56488122 None:intergenic 20.0%
!!! GAGTAAATAAAATAATGGAA+TGG + chr1_2:56488314-56488333 None:intergenic 20.0%
!! GTACTGAGTAAATAAAATAA+TGG + chr1_2:56488319-56488338 None:intergenic 20.0%
!! CTACTTTCTTATTATGATAT+AGG + chr1_2:56488780-56488799 None:intergenic 20.0%
!!! TTTAGTTTAGAATGCTAATA+AGG - chr1_2:56487570-56487589 Msa0078800:CDS 20.0%
!! TTAAGTTAATCAAGACATAT+TGG + chr1_2:56487790-56487809 None:intergenic 20.0%
!!! TTAAGATTTTTTGCTTAGAA+TGG - chr1_2:56487860-56487879 Msa0078800:intron 20.0%
!! CAATGAAAAATATATAGGAT+TGG + chr1_2:56488098-56488117 None:intergenic 20.0%
!! TGATGCAATGAAAAATATAT+AGG + chr1_2:56488103-56488122 None:intergenic 20.0%
!!! GAGTAAATAAAATAATGGAA+TGG + chr1_2:56488314-56488333 None:intergenic 20.0%
!! GTACTGAGTAAATAAAATAA+TGG + chr1_2:56488319-56488338 None:intergenic 20.0%
!! CTACTTTCTTATTATGATAT+AGG + chr1_2:56488780-56488799 None:intergenic 20.0%
!! TAATAATACCTTTTGATGCT+CGG + chr1_2:56487514-56487533 None:intergenic 25.0%
! TTAACTAACTTGGTTCATAA+AGG + chr1_2:56487844-56487863 None:intergenic 25.0%
! GCAAAAAATCTTAACTAACT+TGG + chr1_2:56487854-56487873 None:intergenic 25.0%
!!! CGTAATCATAGTTTCTTTTT+TGG - chr1_2:56488054-56488073 Msa0078800:intron 25.0%
!!! GGACGCAAATTTTAAAAATT+TGG + chr1_2:56488131-56488150 None:intergenic 25.0%
! TAAGGTAACAAACAACAAAT+TGG + chr1_2:56488152-56488171 None:intergenic 25.0%
! AAAAACAAATTGAGCAAAGT+CGG + chr1_2:56488234-56488253 None:intergenic 25.0%
! TAAGTTATAAACGCTGTTAT+AGG + chr1_2:56488705-56488724 None:intergenic 25.0%
! AGCGTTTATAACTTATTAAC+TGG - chr1_2:56488710-56488729 Msa0078800:intron 25.0%
! GCGTTTATAACTTATTAACT+GGG - chr1_2:56488711-56488730 Msa0078800:intron 25.0%
! TTATAACTTATTAACTGGGT+AGG - chr1_2:56488715-56488734 Msa0078800:intron 25.0%
! TGCAATGATTAGAATATACT+AGG + chr1_2:56488839-56488858 None:intergenic 25.0%
!! TGTTTAAAATGATTGATGCT+TGG - chr1_2:56488980-56488999 Msa0078800:intron 25.0%
!! GTTTAAAATGATTGATGCTT+GGG - chr1_2:56488981-56489000 Msa0078800:intron 25.0%
!! TTTAAAATGATTGATGCTTG+GGG - chr1_2:56488982-56489001 Msa0078800:intron 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1_2:56489056-56489075 Msa0078800:CDS 25.0%
!! TAATAATACCTTTTGATGCT+CGG + chr1_2:56487514-56487533 None:intergenic 25.0%
! TTAACTAACTTGGTTCATAA+AGG + chr1_2:56487844-56487863 None:intergenic 25.0%
! GCAAAAAATCTTAACTAACT+TGG + chr1_2:56487854-56487873 None:intergenic 25.0%
!!! CGTAATCATAGTTTCTTTTT+TGG - chr1_2:56488054-56488073 Msa0078800:intron 25.0%
!!! GGACGCAAATTTTAAAAATT+TGG + chr1_2:56488131-56488150 None:intergenic 25.0%
! TAAGGTAACAAACAACAAAT+TGG + chr1_2:56488152-56488171 None:intergenic 25.0%
! AAAAACAAATTGAGCAAAGT+CGG + chr1_2:56488234-56488253 None:intergenic 25.0%
! TAAGTTATAAACGCTGTTAT+AGG + chr1_2:56488705-56488724 None:intergenic 25.0%
! AGCGTTTATAACTTATTAAC+TGG - chr1_2:56488710-56488729 Msa0078800:intron 25.0%
! GCGTTTATAACTTATTAACT+GGG - chr1_2:56488711-56488730 Msa0078800:intron 25.0%
! TTATAACTTATTAACTGGGT+AGG - chr1_2:56488715-56488734 Msa0078800:intron 25.0%
! TGCAATGATTAGAATATACT+AGG + chr1_2:56488839-56488858 None:intergenic 25.0%
!! TGTTTAAAATGATTGATGCT+TGG - chr1_2:56488980-56488999 Msa0078800:intron 25.0%
!! GTTTAAAATGATTGATGCTT+GGG - chr1_2:56488981-56489000 Msa0078800:intron 25.0%
!! TTTAAAATGATTGATGCTTG+GGG - chr1_2:56488982-56489001 Msa0078800:intron 25.0%
! TAGTACTAAAATTGTCTGTT+TGG - chr1_2:56489056-56489075 Msa0078800:CDS 25.0%
CAGGTCAATATTTAAAAGAC+TGG - chr1_2:56487411-56487430 Msa0078800:three_prime_UTR 30.0%
!!! TGTTTTAAGGCAACTTAGAA+TGG - chr1_2:56487891-56487910 Msa0078800:intron 30.0%
AACTTGGATGGAAAATAGAT+GGG + chr1_2:56487997-56488016 None:intergenic 30.0%
! ATCTATTTTCCATCCAAGTT+GGG - chr1_2:56487997-56488016 Msa0078800:intron 30.0%
! ACTATGATTACGAAGCATTA+CGG + chr1_2:56488046-56488065 None:intergenic 30.0%
ACAATACTGAGGCTTAAAAT+AGG + chr1_2:56488192-56488211 None:intergenic 30.0%
ATCAATATGAACTTGAACGA+AGG + chr1_2:56488261-56488280 None:intergenic 30.0%
TATCTGCTCAGATATTTGAA+AGG - chr1_2:56488430-56488449 Msa0078800:intron 30.0%
AAGTGAATTCCTAAGAAAAC+TGG + chr1_2:56488594-56488613 None:intergenic 30.0%
AGGAAAAGAAATAACAGCAA+AGG + chr1_2:56488685-56488704 None:intergenic 30.0%
AAGCTGCATATTGAGTATTT+GGG + chr1_2:56488954-56488973 None:intergenic 30.0%
TAAGCTGCATATTGAGTATT+TGG + chr1_2:56488955-56488974 None:intergenic 30.0%
!! AGACAATTTTAGTACTACTC+TGG + chr1_2:56489053-56489072 None:intergenic 30.0%
TTGTTGAAGGAATAGAAGTT+AGG - chr1_2:56489253-56489272 Msa0078800:five_prime_UTR 30.0%
CAGGTCAATATTTAAAAGAC+TGG - chr1_2:56487411-56487430 Msa0078800:three_prime_UTR 30.0%
!!! TGTTTTAAGGCAACTTAGAA+TGG - chr1_2:56487891-56487910 Msa0078800:intron 30.0%
AACTTGGATGGAAAATAGAT+GGG + chr1_2:56487997-56488016 None:intergenic 30.0%
! ATCTATTTTCCATCCAAGTT+GGG - chr1_2:56487997-56488016 Msa0078800:intron 30.0%
! ACTATGATTACGAAGCATTA+CGG + chr1_2:56488046-56488065 None:intergenic 30.0%
ACAATACTGAGGCTTAAAAT+AGG + chr1_2:56488192-56488211 None:intergenic 30.0%
ATCAATATGAACTTGAACGA+AGG + chr1_2:56488261-56488280 None:intergenic 30.0%
TATCTGCTCAGATATTTGAA+AGG - chr1_2:56488430-56488449 Msa0078800:intron 30.0%
AAGTGAATTCCTAAGAAAAC+TGG + chr1_2:56488594-56488613 None:intergenic 30.0%
AGGAAAAGAAATAACAGCAA+AGG + chr1_2:56488685-56488704 None:intergenic 30.0%
AAGCTGCATATTGAGTATTT+GGG + chr1_2:56488954-56488973 None:intergenic 30.0%
TAAGCTGCATATTGAGTATT+TGG + chr1_2:56488955-56488974 None:intergenic 30.0%
!! AGACAATTTTAGTACTACTC+TGG + chr1_2:56489053-56489072 None:intergenic 30.0%
TTGTTGAAGGAATAGAAGTT+AGG - chr1_2:56489253-56489272 Msa0078800:five_prime_UTR 30.0%
TTCTCAAGCATTAGTTAGTC+AGG - chr1_2:56487392-56487411 Msa0078800:three_prime_UTR 35.0%
TGGATCTTATCTATTGTACC+AGG - chr1_2:56487431-56487450 Msa0078800:exon 35.0%
TGAAAAATCCACACATCCTT+AGG + chr1_2:56487479-56487498 None:intergenic 35.0%
!! AGGATGTGTGGATTTTTCAA+AGG - chr1_2:56487480-56487499 Msa0078800:CDS 35.0%
ATGAGAGAAATCAGCAGTTT+AGG + chr1_2:56487546-56487565 None:intergenic 35.0%
TTAGAATGCTAATAAGGCCT+TGG - chr1_2:56487576-56487595 Msa0078800:CDS 35.0%
AAACTTAAGATCAGCTAACC+TGG + chr1_2:56487724-56487743 None:intergenic 35.0%
GTTAATCAAGACATATTGGC+TGG + chr1_2:56487786-56487805 None:intergenic 35.0%
TAAGTTGCCTTAAAACACCA+TGG + chr1_2:56487888-56487907 None:intergenic 35.0%
! TTTAAGGCAACTTAGAATGG+CGG - chr1_2:56487894-56487913 Msa0078800:intron 35.0%
CAACTTGGATGGAAAATAGA+TGG + chr1_2:56487998-56488017 None:intergenic 35.0%
! CATCTATTTTCCATCCAAGT+TGG - chr1_2:56487996-56488015 Msa0078800:intron 35.0%
GAACTGTGTCTTTAGTTGTA+AGG + chr1_2:56488170-56488189 None:intergenic 35.0%
GAACATGTGTAACAATACTG+AGG + chr1_2:56488203-56488222 None:intergenic 35.0%
TACTCAGTACTTCATCACTT+TGG - chr1_2:56488329-56488348 Msa0078800:intron 35.0%
! TTTGAGGAAGACTTTGAAGA+CGG - chr1_2:56488365-56488384 Msa0078800:intron 35.0%
! AGATATTTGAAAGGCACACA+TGG - chr1_2:56488439-56488458 Msa0078800:intron 35.0%
! TTACCAAAGCCAGTTTTCTT+AGG - chr1_2:56488582-56488601 Msa0078800:intron 35.0%
! ATTCCTAAGAAAACTGGCTT+TGG + chr1_2:56488588-56488607 None:intergenic 35.0%
ACATCTAACAGTAGATTGCT+TGG + chr1_2:56488629-56488648 None:intergenic 35.0%
TAAGAAGTTGAGCAACTTCA+GGG + chr1_2:56488882-56488901 None:intergenic 35.0%
TTAAGAAGTTGAGCAACTTC+AGG + chr1_2:56488883-56488902 None:intergenic 35.0%
TTGCTCAACTTCTTAAAGTG+TGG - chr1_2:56488887-56488906 Msa0078800:intron 35.0%
AGCTGCATATTGAGTATTTG+GGG + chr1_2:56488953-56488972 None:intergenic 35.0%
TTCAATTCAGGCTTAGAAGA+TGG - chr1_2:56489180-56489199 Msa0078800:intron 35.0%
! GTTGCTTAATGGTCTTACTT+AGG + chr1_2:56489279-56489298 None:intergenic 35.0%
! GTTCATGGAATGTTGCTTAA+TGG + chr1_2:56489290-56489309 None:intergenic 35.0%
AACATTCCATGAACTATGCA+AGG - chr1_2:56489296-56489315 Msa0078800:five_prime_UTR 35.0%
ACATTCCATGAACTATGCAA+GGG - chr1_2:56489297-56489316 Msa0078800:five_prime_UTR 35.0%
TTCTCAAGCATTAGTTAGTC+AGG - chr1_2:56487392-56487411 Msa0078800:three_prime_UTR 35.0%
TGGATCTTATCTATTGTACC+AGG - chr1_2:56487431-56487450 Msa0078800:exon 35.0%
TGAAAAATCCACACATCCTT+AGG + chr1_2:56487479-56487498 None:intergenic 35.0%
!! AGGATGTGTGGATTTTTCAA+AGG - chr1_2:56487480-56487499 Msa0078800:CDS 35.0%
ATGAGAGAAATCAGCAGTTT+AGG + chr1_2:56487546-56487565 None:intergenic 35.0%
TTAGAATGCTAATAAGGCCT+TGG - chr1_2:56487576-56487595 Msa0078800:CDS 35.0%
AAACTTAAGATCAGCTAACC+TGG + chr1_2:56487724-56487743 None:intergenic 35.0%
GTTAATCAAGACATATTGGC+TGG + chr1_2:56487786-56487805 None:intergenic 35.0%
TAAGTTGCCTTAAAACACCA+TGG + chr1_2:56487888-56487907 None:intergenic 35.0%
! TTTAAGGCAACTTAGAATGG+CGG - chr1_2:56487894-56487913 Msa0078800:intron 35.0%
CAACTTGGATGGAAAATAGA+TGG + chr1_2:56487998-56488017 None:intergenic 35.0%
! CATCTATTTTCCATCCAAGT+TGG - chr1_2:56487996-56488015 Msa0078800:intron 35.0%
GAACTGTGTCTTTAGTTGTA+AGG + chr1_2:56488170-56488189 None:intergenic 35.0%
GAACATGTGTAACAATACTG+AGG + chr1_2:56488203-56488222 None:intergenic 35.0%
TACTCAGTACTTCATCACTT+TGG - chr1_2:56488329-56488348 Msa0078800:intron 35.0%
! TTTGAGGAAGACTTTGAAGA+CGG - chr1_2:56488365-56488384 Msa0078800:intron 35.0%
! AGATATTTGAAAGGCACACA+TGG - chr1_2:56488439-56488458 Msa0078800:intron 35.0%
! TTACCAAAGCCAGTTTTCTT+AGG - chr1_2:56488582-56488601 Msa0078800:intron 35.0%
! ATTCCTAAGAAAACTGGCTT+TGG + chr1_2:56488588-56488607 None:intergenic 35.0%
ACATCTAACAGTAGATTGCT+TGG + chr1_2:56488629-56488648 None:intergenic 35.0%
TAAGAAGTTGAGCAACTTCA+GGG + chr1_2:56488882-56488901 None:intergenic 35.0%
TTAAGAAGTTGAGCAACTTC+AGG + chr1_2:56488883-56488902 None:intergenic 35.0%
TTGCTCAACTTCTTAAAGTG+TGG - chr1_2:56488887-56488906 Msa0078800:intron 35.0%
AGCTGCATATTGAGTATTTG+GGG + chr1_2:56488953-56488972 None:intergenic 35.0%
TTCAATTCAGGCTTAGAAGA+TGG - chr1_2:56489180-56489199 Msa0078800:intron 35.0%
! GTTGCTTAATGGTCTTACTT+AGG + chr1_2:56489279-56489298 None:intergenic 35.0%
! GTTCATGGAATGTTGCTTAA+TGG + chr1_2:56489290-56489309 None:intergenic 35.0%
AACATTCCATGAACTATGCA+AGG - chr1_2:56489296-56489315 Msa0078800:five_prime_UTR 35.0%
ACATTCCATGAACTATGCAA+GGG - chr1_2:56489297-56489316 Msa0078800:five_prime_UTR 35.0%
TCTTATCTATTGTACCAGGC+TGG - chr1_2:56487435-56487454 Msa0078800:exon 40.0%
TCTTCATCTTGGGATACCTA+AGG - chr1_2:56487460-56487479 Msa0078800:CDS 40.0%
GCTGCATTTCAAGATATCCA+AGG + chr1_2:56487596-56487615 None:intergenic 40.0%
TAGATCTCTCAGCATTGCTT+GGG - chr1_2:56487656-56487675 Msa0078800:CDS 40.0%
ATGATAAGCGCTATTGGAAC+TGG - chr1_2:56487682-56487701 Msa0078800:CDS 40.0%
! TTACGAAGCATTACGGATGA+AGG + chr1_2:56488039-56488058 None:intergenic 40.0%
!! GATGTTGATTTGTGCCATTG+TGG - chr1_2:56488644-56488663 Msa0078800:intron 40.0%
ATTAACTGGGTAGGTCACTA+AGG - chr1_2:56488724-56488743 Msa0078800:intron 40.0%
TTAACTGGGTAGGTCACTAA+GGG - chr1_2:56488725-56488744 Msa0078800:intron 40.0%
CTCAACTTCTTAAAGTGTGG+TGG - chr1_2:56488890-56488909 Msa0078800:intron 40.0%
TGTGGTGGCTTGATATTAGT+GGG - chr1_2:56488905-56488924 Msa0078800:intron 40.0%
AGTATTTGGGGACAAGCTAA+GGG + chr1_2:56488941-56488960 None:intergenic 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1_2:56489068-56489087 Msa0078800:CDS 40.0%
TTTGGATCCAAATGTGGAAG+TGG - chr1_2:56489074-56489093 Msa0078800:CDS 40.0%
AGACGTCCTGATGAATGTTA+AGG - chr1_2:56489203-56489222 Msa0078800:intron 40.0%
GTAGCTCCTTAACATTCATC+AGG + chr1_2:56489212-56489231 None:intergenic 40.0%
AAGAGTGGTCTCTTTGTTGA+AGG - chr1_2:56489240-56489259 Msa0078800:exon 40.0%
CATTCCATGAACTATGCAAG+GGG - chr1_2:56489298-56489317 Msa0078800:five_prime_UTR 40.0%
TCTTATCTATTGTACCAGGC+TGG - chr1_2:56487435-56487454 Msa0078800:exon 40.0%
TCTTCATCTTGGGATACCTA+AGG - chr1_2:56487460-56487479 Msa0078800:CDS 40.0%
GCTGCATTTCAAGATATCCA+AGG + chr1_2:56487596-56487615 None:intergenic 40.0%
TAGATCTCTCAGCATTGCTT+GGG - chr1_2:56487656-56487675 Msa0078800:CDS 40.0%
ATGATAAGCGCTATTGGAAC+TGG - chr1_2:56487682-56487701 Msa0078800:CDS 40.0%
! TTACGAAGCATTACGGATGA+AGG + chr1_2:56488039-56488058 None:intergenic 40.0%
!! GATGTTGATTTGTGCCATTG+TGG - chr1_2:56488644-56488663 Msa0078800:intron 40.0%
ATTAACTGGGTAGGTCACTA+AGG - chr1_2:56488724-56488743 Msa0078800:intron 40.0%
TTAACTGGGTAGGTCACTAA+GGG - chr1_2:56488725-56488744 Msa0078800:intron 40.0%
CTCAACTTCTTAAAGTGTGG+TGG - chr1_2:56488890-56488909 Msa0078800:intron 40.0%
TGTGGTGGCTTGATATTAGT+GGG - chr1_2:56488905-56488924 Msa0078800:intron 40.0%
AGTATTTGGGGACAAGCTAA+GGG + chr1_2:56488941-56488960 None:intergenic 40.0%
TGTCTGTTTGGATCCAAATG+TGG - chr1_2:56489068-56489087 Msa0078800:CDS 40.0%
TTTGGATCCAAATGTGGAAG+TGG - chr1_2:56489074-56489093 Msa0078800:CDS 40.0%
AGACGTCCTGATGAATGTTA+AGG - chr1_2:56489203-56489222 Msa0078800:intron 40.0%
GTAGCTCCTTAACATTCATC+AGG + chr1_2:56489212-56489231 None:intergenic 40.0%
AAGAGTGGTCTCTTTGTTGA+AGG - chr1_2:56489240-56489259 Msa0078800:exon 40.0%
CATTCCATGAACTATGCAAG+GGG - chr1_2:56489298-56489317 Msa0078800:five_prime_UTR 40.0%
TTGGGATACCTAAGGATGTG+TGG - chr1_2:56487468-56487487 Msa0078800:CDS 45.0%
AGACAGTTCCGAGCATCAAA+AGG - chr1_2:56487503-56487522 Msa0078800:CDS 45.0%
CTAGATCTCTCAGCATTGCT+TGG - chr1_2:56487655-56487674 Msa0078800:CDS 45.0%
AGATCTCTCAGCATTGCTTG+GGG - chr1_2:56487657-56487676 Msa0078800:CDS 45.0%
GGATTAATATGCCTGACTCC+AGG - chr1_2:56487703-56487722 Msa0078800:CDS 45.0%
! TTTTGCTTAGAATGGCGCCA+TGG - chr1_2:56487868-56487887 Msa0078800:intron 45.0%
! AATGGCGCCATGGTGTTTTA+AGG - chr1_2:56487878-56487897 Msa0078800:intron 45.0%
ATCCTGATGCTTAGCTGAAG+TGG + chr1_2:56487941-56487960 None:intergenic 45.0%
TCAGCTAAGCATCAGGATTC+AGG - chr1_2:56487943-56487962 Msa0078800:intron 45.0%
TGGGTGAAGACTGAATAGCA+TGG + chr1_2:56487978-56487997 None:intergenic 45.0%
GCATTACGGATGAAGGATCT+TGG + chr1_2:56488032-56488051 None:intergenic 45.0%
! GATTGGTTGTCGCAGCAATT+AGG + chr1_2:56488081-56488100 None:intergenic 45.0%
!! TGGACGTCAGTTAGTCTTTG+AGG - chr1_2:56488349-56488368 Msa0078800:intron 45.0%
GTCCTTTGCAAAAGCTGACT+AGG - chr1_2:56488512-56488531 Msa0078800:intron 45.0%
ATGTCCAGTGTCTACACATG+TGG + chr1_2:56488538-56488557 None:intergenic 45.0%
GTAAGATGTAGTGCATCTGC+AGG + chr1_2:56488566-56488585 None:intergenic 45.0%
!! GTTGATTTGTGCCATTGTGG+AGG - chr1_2:56488647-56488666 Msa0078800:intron 45.0%
AATTCACTCAGCCTCCACAA+TGG + chr1_2:56488661-56488680 None:intergenic 45.0%
!!! TTGCAGTGCTACTTTTGAGC+AGG - chr1_2:56488854-56488873 Msa0078800:intron 45.0%
GTGTGGTGGCTTGATATTAG+TGG - chr1_2:56488904-56488923 Msa0078800:intron 45.0%
GAGTATTTGGGGACAAGCTA+AGG + chr1_2:56488942-56488961 None:intergenic 45.0%
TGTCCTGTGGAGTTATCAGT+TGG - chr1_2:56489015-56489034 Msa0078800:CDS 45.0%
ACACCAACTGATAACTCCAC+AGG + chr1_2:56489021-56489040 None:intergenic 45.0%
!! GAGTTATCAGTTGGTGTCGA+AGG - chr1_2:56489024-56489043 Msa0078800:CDS 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG - chr1_2:56489027-56489046 Msa0078800:CDS 45.0%
GATCCAAATGTGGAAGTGGA+AGG - chr1_2:56489078-56489097 Msa0078800:CDS 45.0%
CTACCTTCCACTTCCACATT+TGG + chr1_2:56489084-56489103 None:intergenic 45.0%
CAAATGTGGAAGTGGAAGGT+AGG - chr1_2:56489082-56489101 Msa0078800:CDS 45.0%
TGGGTGGTTGGAGATTGAAA+TGG - chr1_2:56489152-56489171 Msa0078800:intron 45.0%
GGGTGGTTGGAGATTGAAAT+GGG - chr1_2:56489153-56489172 Msa0078800:intron 45.0%
GGTGGTTGGAGATTGAAATG+GGG - chr1_2:56489154-56489173 Msa0078800:intron 45.0%
GTGGTTGGAGATTGAAATGG+GGG - chr1_2:56489155-56489174 Msa0078800:intron 45.0%
GAAATGGGGGAGTTCAATTC+AGG - chr1_2:56489168-56489187 Msa0078800:intron 45.0%
GAGCTACATCTTTCGAAGAG+TGG - chr1_2:56489225-56489244 Msa0078800:CDS 45.0%
AAGACCCCTTGCATAGTTCA+TGG + chr1_2:56489305-56489324 None:intergenic 45.0%
! TATGCAAGGGGTCTTGTGTT+TGG - chr1_2:56489310-56489329 Msa0078800:five_prime_UTR 45.0%
TTGGGATACCTAAGGATGTG+TGG - chr1_2:56487468-56487487 Msa0078800:CDS 45.0%
AGACAGTTCCGAGCATCAAA+AGG - chr1_2:56487503-56487522 Msa0078800:CDS 45.0%
CTAGATCTCTCAGCATTGCT+TGG - chr1_2:56487655-56487674 Msa0078800:CDS 45.0%
AGATCTCTCAGCATTGCTTG+GGG - chr1_2:56487657-56487676 Msa0078800:CDS 45.0%
GGATTAATATGCCTGACTCC+AGG - chr1_2:56487703-56487722 Msa0078800:CDS 45.0%
! TTTTGCTTAGAATGGCGCCA+TGG - chr1_2:56487868-56487887 Msa0078800:intron 45.0%
! AATGGCGCCATGGTGTTTTA+AGG - chr1_2:56487878-56487897 Msa0078800:intron 45.0%
ATCCTGATGCTTAGCTGAAG+TGG + chr1_2:56487941-56487960 None:intergenic 45.0%
TCAGCTAAGCATCAGGATTC+AGG - chr1_2:56487943-56487962 Msa0078800:intron 45.0%
TGGGTGAAGACTGAATAGCA+TGG + chr1_2:56487978-56487997 None:intergenic 45.0%
GCATTACGGATGAAGGATCT+TGG + chr1_2:56488032-56488051 None:intergenic 45.0%
! GATTGGTTGTCGCAGCAATT+AGG + chr1_2:56488081-56488100 None:intergenic 45.0%
!! TGGACGTCAGTTAGTCTTTG+AGG - chr1_2:56488349-56488368 Msa0078800:intron 45.0%
GTCCTTTGCAAAAGCTGACT+AGG - chr1_2:56488512-56488531 Msa0078800:intron 45.0%
ATGTCCAGTGTCTACACATG+TGG + chr1_2:56488538-56488557 None:intergenic 45.0%
GTAAGATGTAGTGCATCTGC+AGG + chr1_2:56488566-56488585 None:intergenic 45.0%
!! GTTGATTTGTGCCATTGTGG+AGG - chr1_2:56488647-56488666 Msa0078800:intron 45.0%
AATTCACTCAGCCTCCACAA+TGG + chr1_2:56488661-56488680 None:intergenic 45.0%
!!! TTGCAGTGCTACTTTTGAGC+AGG - chr1_2:56488854-56488873 Msa0078800:intron 45.0%
GTGTGGTGGCTTGATATTAG+TGG - chr1_2:56488904-56488923 Msa0078800:intron 45.0%
GAGTATTTGGGGACAAGCTA+AGG + chr1_2:56488942-56488961 None:intergenic 45.0%
TGTCCTGTGGAGTTATCAGT+TGG - chr1_2:56489015-56489034 Msa0078800:CDS 45.0%
ACACCAACTGATAACTCCAC+AGG + chr1_2:56489021-56489040 None:intergenic 45.0%
!! GAGTTATCAGTTGGTGTCGA+AGG - chr1_2:56489024-56489043 Msa0078800:CDS 45.0%
!! TTATCAGTTGGTGTCGAAGG+TGG - chr1_2:56489027-56489046 Msa0078800:CDS 45.0%
GATCCAAATGTGGAAGTGGA+AGG - chr1_2:56489078-56489097 Msa0078800:CDS 45.0%
CTACCTTCCACTTCCACATT+TGG + chr1_2:56489084-56489103 None:intergenic 45.0%
CAAATGTGGAAGTGGAAGGT+AGG - chr1_2:56489082-56489101 Msa0078800:CDS 45.0%
TGGGTGGTTGGAGATTGAAA+TGG - chr1_2:56489152-56489171 Msa0078800:intron 45.0%
GGGTGGTTGGAGATTGAAAT+GGG - chr1_2:56489153-56489172 Msa0078800:intron 45.0%
GGTGGTTGGAGATTGAAATG+GGG - chr1_2:56489154-56489173 Msa0078800:intron 45.0%
GTGGTTGGAGATTGAAATGG+GGG - chr1_2:56489155-56489174 Msa0078800:intron 45.0%
GAAATGGGGGAGTTCAATTC+AGG - chr1_2:56489168-56489187 Msa0078800:intron 45.0%
GAGCTACATCTTTCGAAGAG+TGG - chr1_2:56489225-56489244 Msa0078800:CDS 45.0%
AAGACCCCTTGCATAGTTCA+TGG + chr1_2:56489305-56489324 None:intergenic 45.0%
! TATGCAAGGGGTCTTGTGTT+TGG - chr1_2:56489310-56489329 Msa0078800:five_prime_UTR 45.0%
TAGTCCGTACACGCGTAGTA+CGG + chr1_2:56487359-56487378 None:intergenic 50.0%
CAGGCTGGCATCTTCATCTT+GGG - chr1_2:56487450-56487469 Msa0078800:CDS 50.0%
GGGGTGATGATAAGCGCTAT+TGG - chr1_2:56487676-56487695 Msa0078800:CDS 50.0%
AGATCAGCTAACCTGGAGTC+AGG + chr1_2:56487717-56487736 None:intergenic 50.0%
CTGATGCTTAGCTGAAGTGG+TGG + chr1_2:56487938-56487957 None:intergenic 50.0%
CACCACTTCAGCTAAGCATC+AGG - chr1_2:56487936-56487955 Msa0078800:intron 50.0%
TGCTTCAAGCCCAACTTGGA+TGG + chr1_2:56488009-56488028 None:intergenic 50.0%
! TTGGTGCTTCAAGCCCAACT+TGG + chr1_2:56488013-56488032 None:intergenic 50.0%
TGCAGCTGCAAGTGTAAGGA+TGG + chr1_2:56488490-56488509 None:intergenic 50.0%
ACTCTGCAGCTGCAAGTGTA+AGG + chr1_2:56488494-56488513 None:intergenic 50.0%
! GGCCTAGTCAGCTTTTGCAA+AGG + chr1_2:56488517-56488536 None:intergenic 50.0%
TAGGCCACATGTGTAGACAC+TGG - chr1_2:56488531-56488550 Msa0078800:intron 50.0%
ATGTAGTGCATCTGCAGGTG+TGG + chr1_2:56488561-56488580 None:intergenic 50.0%
!! GTAGGTCACTAAGGGTGTCA+AGG - chr1_2:56488733-56488752 Msa0078800:intron 50.0%
GGGATTTGAGAACTGTCCTG+TGG - chr1_2:56489002-56489021 Msa0078800:intron 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG - chr1_2:56489133-56489152 Msa0078800:intron 50.0%
TAGTCCGTACACGCGTAGTA+CGG + chr1_2:56487359-56487378 None:intergenic 50.0%
CAGGCTGGCATCTTCATCTT+GGG - chr1_2:56487450-56487469 Msa0078800:CDS 50.0%
GGGGTGATGATAAGCGCTAT+TGG - chr1_2:56487676-56487695 Msa0078800:CDS 50.0%
AGATCAGCTAACCTGGAGTC+AGG + chr1_2:56487717-56487736 None:intergenic 50.0%
CTGATGCTTAGCTGAAGTGG+TGG + chr1_2:56487938-56487957 None:intergenic 50.0%
CACCACTTCAGCTAAGCATC+AGG - chr1_2:56487936-56487955 Msa0078800:intron 50.0%
TGCTTCAAGCCCAACTTGGA+TGG + chr1_2:56488009-56488028 None:intergenic 50.0%
! TTGGTGCTTCAAGCCCAACT+TGG + chr1_2:56488013-56488032 None:intergenic 50.0%
TGCAGCTGCAAGTGTAAGGA+TGG + chr1_2:56488490-56488509 None:intergenic 50.0%
ACTCTGCAGCTGCAAGTGTA+AGG + chr1_2:56488494-56488513 None:intergenic 50.0%
! GGCCTAGTCAGCTTTTGCAA+AGG + chr1_2:56488517-56488536 None:intergenic 50.0%
TAGGCCACATGTGTAGACAC+TGG - chr1_2:56488531-56488550 Msa0078800:intron 50.0%
ATGTAGTGCATCTGCAGGTG+TGG + chr1_2:56488561-56488580 None:intergenic 50.0%
!! GTAGGTCACTAAGGGTGTCA+AGG - chr1_2:56488733-56488752 Msa0078800:intron 50.0%
GGGATTTGAGAACTGTCCTG+TGG - chr1_2:56489002-56489021 Msa0078800:intron 50.0%
GTCCTAGTGTGAGAAGCGAT+GGG - chr1_2:56489133-56489152 Msa0078800:intron 50.0%
TCACCCGTACTACGCGTGTA+CGG - chr1_2:56487352-56487371 Msa0078800:three_prime_UTR 55.0%
AGTCCGTACACGCGTAGTAC+GGG + chr1_2:56487358-56487377 None:intergenic 55.0%
CCAAGATGAAGATGCCAGCC+TGG + chr1_2:56487452-56487471 None:intergenic 55.0%
CCAGGCTGGCATCTTCATCT+TGG - chr1_2:56487449-56487468 Msa0078800:CDS 55.0%
AGGCAGCATGACAGAGCAGT+AGG - chr1_2:56489102-56489121 Msa0078800:intron 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG - chr1_2:56489132-56489151 Msa0078800:intron 55.0%
CACCCATCGCTTCTCACACT+AGG + chr1_2:56489138-56489157 None:intergenic 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1_2:56489136-56489155 Msa0078800:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1_2:56489140-56489159 Msa0078800:intron 55.0%
! GCAAGGGGTCTTGTGTTTGG+TGG - chr1_2:56489313-56489332 Msa0078800:five_prime_UTR 55.0%
TCACCCGTACTACGCGTGTA+CGG - chr1_2:56487352-56487371 Msa0078800:three_prime_UTR 55.0%
AGTCCGTACACGCGTAGTAC+GGG + chr1_2:56487358-56487377 None:intergenic 55.0%
CCAAGATGAAGATGCCAGCC+TGG + chr1_2:56487452-56487471 None:intergenic 55.0%
CCAGGCTGGCATCTTCATCT+TGG - chr1_2:56487449-56487468 Msa0078800:CDS 55.0%
AGGCAGCATGACAGAGCAGT+AGG - chr1_2:56489102-56489121 Msa0078800:intron 55.0%
CGTCCTAGTGTGAGAAGCGA+TGG - chr1_2:56489132-56489151 Msa0078800:intron 55.0%
CACCCATCGCTTCTCACACT+AGG + chr1_2:56489138-56489157 None:intergenic 55.0%
CTAGTGTGAGAAGCGATGGG+TGG - chr1_2:56489136-56489155 Msa0078800:intron 55.0%
TGTGAGAAGCGATGGGTGGT+TGG - chr1_2:56489140-56489159 Msa0078800:intron 55.0%
! GCAAGGGGTCTTGTGTTTGG+TGG - chr1_2:56489313-56489332 Msa0078800:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56487345 56489383 56487345 ID=Msa0078800;Name=Msa0078800
chr1_2 mRNA 56487345 56489383 56487345 ID=Msa0078800-mRNA-1;Parent=Msa0078800;Name=Msa0078800-mRNA-1;_AED=0.26;_eAED=0.26;_QI=138|1|1|1|1|1|3|99|186
chr1_2 exon 56487345 56487852 56487345 ID=Msa0078800-mRNA-1:exon:17738;Parent=Msa0078800-mRNA-1
chr1_2 exon 56489004 56489113 56489004 ID=Msa0078800-mRNA-1:exon:17737;Parent=Msa0078800-mRNA-1
chr1_2 exon 56489204 56489383 56489204 ID=Msa0078800-mRNA-1:exon:17736;Parent=Msa0078800-mRNA-1
chr1_2 five_prime_UTR 56489246 56489383 56489246 ID=Msa0078800-mRNA-1:five_prime_utr;Parent=Msa0078800-mRNA-1
chr1_2 CDS 56489204 56489245 56489204 ID=Msa0078800-mRNA-1:cds;Parent=Msa0078800-mRNA-1
chr1_2 CDS 56489004 56489113 56489004 ID=Msa0078800-mRNA-1:cds;Parent=Msa0078800-mRNA-1
chr1_2 CDS 56487444 56487852 56487444 ID=Msa0078800-mRNA-1:cds;Parent=Msa0078800-mRNA-1
chr1_2 three_prime_UTR 56487345 56487443 56487345 ID=Msa0078800-mRNA-1:three_prime_utr;Parent=Msa0078800-mRNA-1
Gene Sequence

>Msa0078800

ATGTGTGGATTTTTCAAAGGAGACAGTTCCGAGCATCAAAAGCGAAAGAGAGAGAAAAAGAAAAAGTCTTGCGTGCTTTCTGCTAGATCTCTCAGCATTGCTTGGGGTGATGATAAGCGCTATTGGAACTGGATTAATATGCCTGACTCCAGGTTCCCTGAAGTTGCTCAACTTCTTAAAGTGTGGTGGCTTGATATTAGTGGGACGATAAACACCCTTAGCTTGTCCCCAAATACTCAATATGCAGCTTATCTTGTGTTTAAAATGATTGATGCTTGGGGATTTGAGAACTGTCCTGTGGAGTTATCAGTTGGTGTCGAAGGTGGCCAGAGTAGTACTAAAATTGTCTGTTTGGATCCAAATGTGGAAGTGGAAGGTAGGCAGCATGACAGAGCAGTAGGATTGCAACGTCCTAGTGTGAGAAGCGATGGGTGGTTGGAGATTGAAATGGGGGAGTTCAATTCAGGCTTAGAAGATGGAGACGTCCTGATGAATGTTAAGGAGCTACATCTTTCGAAGAGTGGTCTCTTTGTTGAAGGAATAGAAGTTAGGCCTAAGTAA
Protein sequence

>Msa0078800

MCGFFKGDSSEHQKRKREKKKKSCVLSARSLSIAWGDDKRYWNWINMPDSRFPEVAQLLKVWWLDISGTINTLSLSPNTQYAAYLVFKMIDAWGFENCPVELSVGVEGGQSSTKIVCLDPNVEVEGRQHDRAVGLQRPSVRSDGWLEIEMGEFNSGLEDGDVLMNVKELHLSKSGLFVEGIEVRPK*