AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333030 MtrunA17_Chr2g0316251 96.721 366 12 0 16 381 965 1330 0.0 739
Msa0333030 MtrunA17_Chr1g0205451 37.304 319 181 4 16 334 812 1111 3.06e-58 206
Msa0333030 MtrunA17_Chr1g0185491 46.970 198 99 2 22 217 1027 1220 1.37e-51 187
Msa0333030 MtrunA17_Chr3g0105291 39.303 201 121 1 18 217 808 1008 1.26e-40 154
Msa0333030 MtrunA17_Chr5g0430361 38.308 201 123 1 18 217 857 1057 8.27e-38 146
Msa0333030 MtrunA17_Chr7g0259981 38.384 198 108 3 30 225 115 300 9.31e-36 134
Msa0333030 MtrunA17_Chr3g0134811 35.922 206 123 2 12 217 595 791 8.89e-35 137
Msa0333030 MtrunA17_Chr3g0134821 38.342 193 114 2 31 221 647 836 4.95e-33 132
Msa0333030 MtrunA17_Chr5g0407211 33.014 209 129 2 11 217 220 419 4.76e-32 126
Msa0333030 MtrunA17_Chr7g0270101 34.615 208 131 2 12 217 583 787 1.34e-31 127
Msa0333030 MtrunA17_Chr5g0407251 32.536 209 130 2 11 217 220 419 6.07e-31 123
Msa0333030 MtrunA17_Chr3g0134851 33.714 175 105 2 45 217 299 464 3.61e-23 101
Msa0333030 MtrunA17_Chr2g0320451 36.601 153 94 2 66 217 873 1023 2.67e-20 94.0
Msa0333030 MtrunA17_Chr4g0055731 29.064 203 99 5 22 218 307 470 1.32e-19 90.9
Msa0333030 MtrunA17_Chr4g0025251 38.255 149 89 2 71 217 554 701 2.90e-19 90.5
Msa0333030 MtrunA17_Chr1g0182481 34.437 151 95 3 66 215 744 891 2.29e-18 87.8
Msa0333030 MtrunA17_Chr1g0179841 33.766 154 98 2 66 217 651 802 4.35e-18 87.0
Msa0333030 MtrunA17_Chr7g0265211 30.921 152 101 2 66 215 796 945 4.07e-15 77.8
Msa0333030 MtrunA17_Chr4g0028111 35.461 141 88 2 49 188 420 558 2.25e-14 75.1
Msa0333030 MtrunA17_Chr4g0027811 40.426 94 53 2 126 217 486 578 4.23e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333030 AT3G14980.5 59.615 260 99 4 18 273 779 1036 4.32e-92 301
Msa0333030 AT3G14980.6 59.615 260 99 4 18 273 824 1081 6.30e-92 301
Msa0333030 AT3G14980.1 59.615 260 99 4 18 273 824 1081 6.30e-92 301
Msa0333030 AT3G14980.2 59.615 260 99 4 18 273 824 1081 6.30e-92 301
Msa0333030 AT3G14980.3 69.154 201 62 0 18 218 824 1024 7.56e-92 299
Msa0333030 AT5G36740.4 46.635 208 105 2 19 221 604 810 5.09e-58 205
Msa0333030 AT5G36740.5 46.635 208 105 2 19 221 747 953 5.28e-58 206
Msa0333030 AT5G36740.1 46.635 208 105 2 19 221 747 953 5.28e-58 206
Msa0333030 AT1G05380.3 46.939 196 103 1 22 217 731 925 2.19e-56 201
Msa0333030 AT1G05380.1 46.939 196 103 1 22 217 731 925 2.19e-56 201
Msa0333030 AT1G05380.2 46.939 196 103 1 22 217 731 925 2.19e-56 201
Msa0333030 AT4G14920.2 38.272 243 137 4 8 244 779 1014 7.53e-48 176
Msa0333030 AT4G14920.1 38.272 243 137 4 8 244 779 1014 7.53e-48 176
Msa0333030 AT4G14920.3 38.115 244 137 4 8 244 779 1015 1.05e-47 176
Msa0333030 AT5G36670.3 30.641 359 202 8 19 348 604 944 3.89e-45 168
Msa0333030 AT5G36670.4 39.286 224 112 4 19 221 747 967 4.81e-45 168
Msa0333030 AT5G36670.5 39.286 224 112 4 19 221 747 967 4.81e-45 168
Msa0333030 AT5G36670.1 39.286 224 112 4 19 221 757 977 4.87e-45 168
Msa0333030 AT3G14980.4 65.766 111 38 0 18 128 824 934 1.17e-41 158
Msa0333030 AT5G36670.2 43.151 146 77 2 19 159 747 891 7.65e-34 135
Msa0333030 AT5G36740.2 43.151 146 77 2 19 159 747 891 7.65e-34 135
Msa0333030 AT5G36740.3 43.151 146 77 2 19 159 747 891 7.65e-34 135
Msa0333030 AT5G58610.4 35.323 201 129 1 18 217 577 777 1.84e-32 130
Msa0333030 AT5G58610.7 35.323 201 129 1 18 217 799 999 2.26e-32 130
Msa0333030 AT5G58610.3 35.323 201 129 1 18 217 808 1008 2.38e-32 130
Msa0333030 AT5G58610.8 35.323 201 129 1 18 217 808 1008 2.60e-32 130
Msa0333030 AT5G58610.2 35.323 201 129 1 18 217 808 1008 2.60e-32 130
Msa0333030 AT5G58610.5 35.323 201 129 1 18 217 799 999 2.80e-32 130
Msa0333030 AT5G58610.1 42.763 152 87 0 66 217 822 973 9.21e-32 129
Msa0333030 AT5G58610.6 42.763 152 87 0 66 217 822 973 1.05e-31 128
Msa0333030 AT5G63900.1 29.060 234 148 6 3 232 336 555 2.73e-23 102
Msa0333030 AT2G37520.1 29.907 214 132 6 20 232 632 828 1.68e-20 94.7
Msa0333030 AT5G58610.10 33.562 146 96 1 18 162 808 953 2.31e-19 91.3
Msa0333030 AT5G58610.9 33.562 146 96 1 18 162 799 944 3.52e-19 90.9
Msa0333030 AT3G53680.2 32.026 153 100 3 66 217 684 833 1.21e-18 89.0
Msa0333030 AT3G53680.1 32.026 153 100 3 66 217 682 831 1.24e-18 89.0
Msa0333030 AT2G27980.1 33.333 153 99 2 66 217 907 1057 5.11e-17 84.3
Msa0333030 AT2G36720.1 30.921 152 101 2 66 215 822 971 3.85e-14 75.1
Msa0333030 AT2G36720.2 30.921 152 101 2 66 215 822 971 3.85e-14 75.1

Find 88 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATTGCATACTGCCTTTA+GGG 0.232535 2_4:-50575138 None:intergenic
TCTTTGTTGGCACTTGTTCT+TGG 0.233184 2_4:-50577068 None:intergenic
TTGTATTGCATACTGCCTTT+AGG 0.260682 2_4:-50575139 None:intergenic
GGTATCAGCCATTCCGGATT+TGG 0.327959 2_4:+50576339 Msa0333030:CDS
TCCACATTGTTTCCTTCAAA+AGG 0.353806 2_4:-50577041 None:intergenic
CTAGCCGTTGAAATTGCATT+AGG 0.356729 2_4:+50576966 Msa0333030:CDS
GAGACTTGGACCAAGGGCTT+TGG 0.358747 2_4:+50576364 Msa0333030:CDS
TGCTCAGTGGTTTGCCCTAA+AGG 0.365394 2_4:+50575124 Msa0333030:CDS
GAGGACAAGAATATCAATAT+AGG 0.382323 2_4:+50577119 Msa0333030:CDS
AGATTCAGTGCCATCTTTGT+TGG 0.396173 2_4:-50577081 None:intergenic
AACAAAGATGGCACTGAATC+TGG 0.401221 2_4:+50577083 Msa0333030:CDS
GCTTGTGGTATCAGCCATTC+CGG 0.405683 2_4:+50576333 Msa0333030:CDS
CGCCCGTGGCTTATTCCCTA+TGG 0.405742 2_4:+50577583 Msa0333030:CDS
TCACTGTCGGCCCTATTGTC+TGG 0.406621 2_4:-50576921 None:intergenic
ATCTTTCTTCTTGCCATACA+AGG 0.409056 2_4:-50576473 None:intergenic
CCACATTGTTTCCTTCAAAA+GGG 0.424436 2_4:-50577040 None:intergenic
TTCCGGATTTGGTGGAGACT+TGG 0.432477 2_4:+50576350 Msa0333030:CDS
CGAGGCGTCGGCACATTCCT+TGG 0.436112 2_4:-50575828 None:intergenic
TAAAGCTTTACACCACGGTT+TGG 0.440613 2_4:+50577534 Msa0333030:CDS
ACTGAGCAGAATGAACCTTT+TGG 0.444091 2_4:-50575109 None:intergenic
TAATATCTGTAGCATCTATC+AGG 0.446238 2_4:+50575485 Msa0333030:CDS
TAATACAAACTCGTGGGCTT+AGG 0.446943 2_4:-50577619 None:intergenic
TAACTAGCCCAACCTGAGAT+TGG 0.450900 2_4:-50575034 None:intergenic
GTCCAAGTCTCCACCAAATC+CGG 0.451097 2_4:-50576352 None:intergenic
AGCTGTTGCCCTTACCATCA+TGG 0.470761 2_4:+50575166 Msa0333030:CDS
ATGCGGTTAATAACTAGATC+AGG 0.473000 2_4:+50574861 Msa0333030:CDS
AATCATTGCCGCTAGATGTT+GGG 0.474736 2_4:+50576835 Msa0333030:CDS
TACTTATTTGCAGAGTGCAC+GGG 0.476339 2_4:+50575755 Msa0333030:intron
GAATCATTGCCGCTAGATGT+TGG 0.478167 2_4:+50576834 Msa0333030:CDS
ATCTCTGCTGATTTCACTGT+CGG 0.484434 2_4:-50576934 None:intergenic
AACACTCCTCCATGATGGTA+AGG 0.484466 2_4:-50575175 None:intergenic
TTTGGTGGAGACTTGGACCA+AGG 0.489098 2_4:+50576357 Msa0333030:CDS
TATCAATATAGGTGAAGTAA+AGG 0.490068 2_4:+50577130 Msa0333030:CDS
AAATTGCTGATGGCTTCGCC+TGG 0.498911 2_4:+50575060 Msa0333030:CDS
GTACTCTCCAATCTCAGGTT+GGG 0.502494 2_4:+50575027 Msa0333030:CDS
CTAGTTAATCAAATTGCTGA+TGG 0.511889 2_4:+50575050 Msa0333030:CDS
AGGTACCTGCTCTGAAGGAA+TGG 0.513613 2_4:+50576803 Msa0333030:CDS
ACAGAGACAAGTAGGTCTTT+CGG 0.513765 2_4:+50577002 Msa0333030:CDS
GCCCGTGGCTTATTCCCTAT+GGG 0.516198 2_4:+50577584 Msa0333030:CDS
ATACTGTACTCTCCAATCTC+AGG 0.522025 2_4:+50575022 Msa0333030:CDS
TCAATGCTAGATCTAAGAAC+AGG 0.522573 2_4:+50575203 Msa0333030:CDS
TGGCTTATTCCCTATGGGCA+CGG 0.522664 2_4:+50577589 Msa0333030:CDS
ATGCATACATGATGACCAAA+AGG 0.522770 2_4:+50575094 Msa0333030:CDS
CACATTGTTTCCTTCAAAAG+GGG 0.530459 2_4:-50577039 None:intergenic
TATGTCCATTCCTTCAGAGC+AGG 0.538738 2_4:-50576808 None:intergenic
GCCCATAGGGAATAAGCCAC+GGG 0.539395 2_4:-50577585 None:intergenic
ACAGATGAATCATTCAAAGT+AGG 0.539589 2_4:+50576783 Msa0333030:CDS
AGAACAAGTGCCAACAAAGA+TGG 0.542324 2_4:+50577071 Msa0333030:CDS
TTACTTATTTGCAGAGTGCA+CGG 0.546128 2_4:+50575754 Msa0333030:intron
AAAGTAGGTACCTGCTCTGA+AGG 0.547142 2_4:+50576798 Msa0333030:CDS
TATGCATCTCAGAAGCGTCC+AGG 0.548373 2_4:-50575078 None:intergenic
ATCAGCCATTCCGGATTTGG+TGG 0.549329 2_4:+50576342 Msa0333030:CDS
ATCTCCTAATGCAATTTCAA+CGG 0.550717 2_4:-50576970 None:intergenic
TTGGTGGAGACTTGGACCAA+GGG 0.551309 2_4:+50576358 Msa0333030:CDS
TGTACTCTCCAATCTCAGGT+TGG 0.558790 2_4:+50575026 Msa0333030:CDS
AAGAATCAACAGAGACAAGT+AGG 0.561321 2_4:+50576994 Msa0333030:CDS
TGACTTAGCACCAACTTCGT+TGG 0.567618 2_4:-50576868 None:intergenic
TGCCCATAGGGAATAAGCCA+CGG 0.569397 2_4:-50577586 None:intergenic
AACGCAGCTACCAACGAAGT+TGG 0.570716 2_4:+50576858 Msa0333030:CDS
CACGAAACACTCCTCCATGA+TGG 0.574351 2_4:-50575180 None:intergenic
TATGGCAAGAAGAAAGATGA+AGG 0.578063 2_4:+50576478 Msa0333030:CDS
CCTCTTCGATTGAGCTCACG+AGG 0.585279 2_4:-50575846 None:intergenic
GCAGATGTTAATATCTGTCA+AGG 0.585666 2_4:+50576303 Msa0333030:intron
TGCAGTCGGTATCGTCGCCA+AGG 0.591449 2_4:+50575811 Msa0333030:CDS
CTCTGATTGCAACTTGCAGT+CGG 0.604744 2_4:+50575797 Msa0333030:CDS
AAGTGTGGTTTATGCGCCCG+TGG 0.611484 2_4:+50577569 Msa0333030:CDS
CGATTGAGCTCACGAGGCGT+CGG 0.616069 2_4:-50575840 None:intergenic
CGACTGCAAGTTGCAATCAG+AGG 0.616845 2_4:-50575796 None:intergenic
CACGGTTAATACAAACTCGT+GGG 0.619265 2_4:-50577625 None:intergenic
ACACTCCTCCATGATGGTAA+GGG 0.621140 2_4:-50575174 None:intergenic
AAAAGGTTCATTCTGCTCAG+TGG 0.624275 2_4:+50575111 Msa0333030:CDS
CCACGGTTAATACAAACTCG+TGG 0.628176 2_4:-50577626 None:intergenic
AGTCTCCACCAAATCCGGAA+TGG 0.630263 2_4:-50576347 None:intergenic
AATCAGAGGCATCTCTGCAA+CGG 0.631814 2_4:-50575782 None:intergenic
CCTCGTGAGCTCAATCGAAG+AGG 0.632766 2_4:+50575846 Msa0333030:CDS
AGGTACGAATCCAAAGCCCT+TGG 0.633630 2_4:-50576374 None:intergenic
TAAGTCAGAGTGTGAGCCTG+TGG 0.635910 2_4:+50576884 Msa0333030:CDS
CCCCAATTGAATAAAACTTG+GGG 0.636059 2_4:-50575239 None:intergenic
GCTGCGTTCCCAACATCTAG+CGG 0.645233 2_4:-50576843 None:intergenic
AGCTGAATCCAGAAAATCCG+TGG 0.646219 2_4:+50577510 Msa0333030:CDS
GGCTTTGGATTCGTACCTGT+AGG 0.648737 2_4:+50576379 Msa0333030:CDS
AAAGATGGCACTGAATCTGG+TGG 0.653852 2_4:+50577086 Msa0333030:CDS
TACGCTACGGCTAATAGCTG+TGG 0.653953 2_4:-50574892 None:intergenic
TGTCAAGGTAGAAAAGCTTG+TGG 0.662950 2_4:+50576318 Msa0333030:CDS
GTGGTGTAAAGCTTTAACCA+CGG 0.666067 2_4:-50577527 None:intergenic
ATAAAACTTGGGGTATCATG+TGG 0.677341 2_4:-50575229 None:intergenic
GTGGTTAAAGCTTTACACCA+CGG 0.685852 2_4:+50577529 Msa0333030:CDS
TGTTGCCCTTACCATCATGG+AGG 0.739426 2_4:+50575169 Msa0333030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATGTTTGAATAAATTT+TGG - chr2_4:50575899-50575918 None:intergenic 15.0%
!!! TTATTCTTTGAAATTTGATA+TGG + chr2_4:50575982-50576001 Msa0333030:intron 15.0%
!!! CATCATATTACTTTTTTTTT+GGG + chr2_4:50577342-50577361 Msa0333030:intron 15.0%
!! GTTAAAGAAAAACAACTTAA+TGG + chr2_4:50576420-50576439 Msa0333030:CDS 20.0%
!!! AAACAATGATTTTTACTTAC+TGG - chr2_4:50576722-50576741 None:intergenic 20.0%
!!! GCATCATATTACTTTTTTTT+TGG + chr2_4:50577341-50577360 Msa0333030:intron 20.0%
!!! TCATTGGTGTTATTTAATCA+AGG + chr2_4:50574974-50574993 Msa0333030:intron 25.0%
! TTAAATGAAGTACAAAGAAG+AGG - chr2_4:50575296-50575315 None:intergenic 25.0%
! TCTTCTGACATTTATGAAAA+TGG + chr2_4:50575566-50575585 Msa0333030:intron 25.0%
!! AAATAGCATCTCTGTTTTAT+TGG + chr2_4:50575715-50575734 Msa0333030:intron 25.0%
!!! AATAGCATCTCTGTTTTATT+GGG + chr2_4:50575716-50575735 Msa0333030:intron 25.0%
!! ATTTGATATGGATTTTCACT+TGG + chr2_4:50575994-50576013 Msa0333030:intron 25.0%
! TCATTAAGTGAAATTTACGT+GGG - chr2_4:50576128-50576147 None:intergenic 25.0%
! ATCATTAAGTGAAATTTACG+TGG - chr2_4:50576129-50576148 None:intergenic 25.0%
!! AAGAAATGGATTTAGAAACA+TGG - chr2_4:50576277-50576296 None:intergenic 25.0%
! ACATCTGCTAATAAAAGAAA+TGG - chr2_4:50576291-50576310 None:intergenic 25.0%
! TTACTTGAAAAATCCTTGTA+TGG + chr2_4:50576460-50576479 Msa0333030:CDS 25.0%
!!! AAGATGAAGGTATTTTCATT+TGG + chr2_4:50576491-50576510 Msa0333030:intron 25.0%
!!! GTATTTTCATTTGGTGTATT+TGG + chr2_4:50576500-50576519 Msa0333030:intron 25.0%
!!! TTACTTACTGGTTTATGATA+AGG - chr2_4:50576710-50576729 None:intergenic 25.0%
! TATCAATATAGGTGAAGTAA+AGG + chr2_4:50577130-50577149 Msa0333030:CDS 25.0%
!! ACTACAACATTTTTGAACTT+AGG + chr2_4:50577469-50577488 Msa0333030:intron 25.0%
TTATCCTAACATCATCTCAT+TGG + chr2_4:50574958-50574977 Msa0333030:intron 30.0%
! TAATCAAGGACTTGACTTTT+TGG + chr2_4:50574988-50575007 Msa0333030:intron 30.0%
CTAGTTAATCAAATTGCTGA+TGG + chr2_4:50575050-50575069 Msa0333030:CDS 30.0%
!!! TACCCCAAGTTTTATTCAAT+TGG + chr2_4:50575237-50575256 Msa0333030:CDS 30.0%
!!! ACCCCAAGTTTTATTCAATT+GGG + chr2_4:50575238-50575257 Msa0333030:CDS 30.0%
! ATAAGAGACGGAGTATTATT+TGG - chr2_4:50575323-50575342 None:intergenic 30.0%
TTGAAATAGAGCATAAGAGA+CGG - chr2_4:50575335-50575354 None:intergenic 30.0%
TTGTCTTGTCTTGATTTCTA+AGG + chr2_4:50575373-50575392 Msa0333030:intron 30.0%
! TTAATTTCCATGTGGTTTTC+AGG + chr2_4:50575398-50575417 Msa0333030:intron 30.0%
TAATATCTGTAGCATCTATC+AGG + chr2_4:50575485-50575504 Msa0333030:CDS 30.0%
CAATTCATTCATAAATCGAC+TGG - chr2_4:50575668-50575687 None:intergenic 30.0%
TGTATAAACAGCTATGAGTT+CGG + chr2_4:50576208-50576227 Msa0333030:intron 30.0%
! AATGGATTTAGAAACATGGA+AGG - chr2_4:50576273-50576292 None:intergenic 30.0%
! AACAACTTAATGGTTTTTCC+TGG + chr2_4:50576430-50576449 Msa0333030:CDS 30.0%
! ACGAAAGGATGATTTTTGAT+TGG - chr2_4:50576595-50576614 None:intergenic 30.0%
!!! ATTGTTTTGTTTGCTGAAAC+AGG + chr2_4:50576735-50576754 Msa0333030:intron 30.0%
ACAGATGAATCATTCAAAGT+AGG + chr2_4:50576783-50576802 Msa0333030:CDS 30.0%
CAAAAATCAACCAGACAATA+GGG + chr2_4:50576911-50576930 Msa0333030:CDS 30.0%
ATCTCCTAATGCAATTTCAA+CGG - chr2_4:50576973-50576992 None:intergenic 30.0%
GAGGACAAGAATATCAATAT+AGG + chr2_4:50577119-50577138 Msa0333030:CDS 30.0%
AAAGTAATATGATGCATGCT+CGG - chr2_4:50577336-50577355 None:intergenic 30.0%
ATGCGGTTAATAACTAGATC+AGG + chr2_4:50574861-50574880 Msa0333030:CDS 35.0%
AACACCAATGAGATGATGTT+AGG - chr2_4:50574965-50574984 None:intergenic 35.0%
ATGCATACATGATGACCAAA+AGG + chr2_4:50575094-50575113 Msa0333030:CDS 35.0%
TGTATTGCATACTGCCTTTA+GGG - chr2_4:50575141-50575160 None:intergenic 35.0%
TTGTATTGCATACTGCCTTT+AGG - chr2_4:50575142-50575161 None:intergenic 35.0%
TCAATGCTAGATCTAAGAAC+AGG + chr2_4:50575203-50575222 Msa0333030:CDS 35.0%
! ATAAAACTTGGGGTATCATG+TGG - chr2_4:50575232-50575251 None:intergenic 35.0%
CCCCAATTGAATAAAACTTG+GGG - chr2_4:50575242-50575261 None:intergenic 35.0%
!!! CCCCAAGTTTTATTCAATTG+GGG + chr2_4:50575239-50575258 Msa0333030:CDS 35.0%
CCCCCAATTGAATAAAACTT+GGG - chr2_4:50575243-50575262 None:intergenic 35.0%
!!! CCCAAGTTTTATTCAATTGG+GGG + chr2_4:50575240-50575259 Msa0333030:CDS 35.0%
ACCCCCAATTGAATAAAACT+TGG - chr2_4:50575244-50575263 None:intergenic 35.0%
TTTATTCAATTGGGGGTTAG+TGG + chr2_4:50575247-50575266 Msa0333030:intron 35.0%
AGAGGTGGAAAAATTGTCAT+GGG - chr2_4:50575278-50575297 None:intergenic 35.0%
AAGAGGTGGAAAAATTGTCA+TGG - chr2_4:50575279-50575298 None:intergenic 35.0%
AATGAAGTACAAAGAAGAGG+TGG - chr2_4:50575293-50575312 None:intergenic 35.0%
TATTTCAAAGCCTCAACTTC+AGG + chr2_4:50575347-50575366 Msa0333030:intron 35.0%
AAGACAAAATCCTGAAGTTG+AGG - chr2_4:50575360-50575379 None:intergenic 35.0%
! CTAAGGCTTTAATTTCCATG+TGG + chr2_4:50575390-50575409 Msa0333030:intron 35.0%
! TTTGCTCGTCTGAATTTTCA+AGG + chr2_4:50575427-50575446 Msa0333030:CDS 35.0%
! TTGCTCGTCTGAATTTTCAA+GGG + chr2_4:50575428-50575447 Msa0333030:CDS 35.0%
!! TTTTCAAGGGTTTTACACAG+TGG + chr2_4:50575441-50575460 Msa0333030:CDS 35.0%
CATTCATAAATCGACTGGAA+GGG - chr2_4:50575663-50575682 None:intergenic 35.0%
TCATTCATAAATCGACTGGA+AGG - chr2_4:50575664-50575683 None:intergenic 35.0%
GCACTCTGCAAATAAGTAAA+AGG - chr2_4:50575753-50575772 None:intergenic 35.0%
TTACTTATTTGCAGAGTGCA+CGG + chr2_4:50575754-50575773 Msa0333030:intron 35.0%
!! AAGAGAGTGTTAATCCAACT+GGG - chr2_4:50575948-50575967 None:intergenic 35.0%
! ATTCCTGCATTTGCTTCTTT+TGG + chr2_4:50576234-50576253 Msa0333030:intron 35.0%
GCAGATGTTAATATCTGTCA+AGG + chr2_4:50576303-50576322 Msa0333030:intron 35.0%
!!! TTTTCAAGTAACACTGTTCC+AGG - chr2_4:50576451-50576470 None:intergenic 35.0%
ATCTTTCTTCTTGCCATACA+AGG - chr2_4:50576476-50576495 None:intergenic 35.0%
TATGGCAAGAAGAAAGATGA+AGG + chr2_4:50576478-50576497 Msa0333030:CDS 35.0%
!! AGAGACTAGTTTCGATATAC+TGG + chr2_4:50576542-50576561 Msa0333030:intron 35.0%
ATCCTTTCGTACGACTATTA+TGG + chr2_4:50576605-50576624 Msa0333030:intron 35.0%
TACCATAATAGTCGTACGAA+AGG - chr2_4:50576610-50576629 None:intergenic 35.0%
GCAAAAATCAACCAGACAAT+AGG + chr2_4:50576910-50576929 Msa0333030:CDS 35.0%
AAGAATCAACAGAGACAAGT+AGG + chr2_4:50576994-50577013 Msa0333030:CDS 35.0%
CACATTGTTTCCTTCAAAAG+GGG - chr2_4:50577042-50577061 None:intergenic 35.0%
CCACATTGTTTCCTTCAAAA+GGG - chr2_4:50577043-50577062 None:intergenic 35.0%
TCCACATTGTTTCCTTCAAA+AGG - chr2_4:50577044-50577063 None:intergenic 35.0%
!! TTTTGAAGGAAACAATGTGG+AGG + chr2_4:50577043-50577062 Msa0333030:CDS 35.0%
TCATGTTAACTTATGCCCTA+AGG + chr2_4:50577365-50577384 Msa0333030:intron 35.0%
CATGTTAACTTATGCCCTAA+GGG + chr2_4:50577366-50577385 Msa0333030:intron 35.0%
ACAAGTTAAGGAGCTAAAAG+AGG + chr2_4:50577390-50577409 Msa0333030:intron 35.0%
AAACCACACTTGAAAAACAG+TGG - chr2_4:50577560-50577579 None:intergenic 35.0%
!! CTTGACTTTTTGGTATGTGC+AGG + chr2_4:50574998-50575017 Msa0333030:intron 40.0%
ATACTGTACTCTCCAATCTC+AGG + chr2_4:50575022-50575041 Msa0333030:CDS 40.0%
! ACTGAGCAGAATGAACCTTT+TGG - chr2_4:50575112-50575131 None:intergenic 40.0%
AAAAGGTTCATTCTGCTCAG+TGG + chr2_4:50575111-50575130 Msa0333030:CDS 40.0%
AATCAGACCTGAAAACCACA+TGG - chr2_4:50575408-50575427 None:intergenic 40.0%
TACTTATTTGCAGAGTGCAC+GGG + chr2_4:50575755-50575774 Msa0333030:intron 40.0%
CTCAATCGAAGAGGTAAATC+TGG + chr2_4:50575855-50575874 Msa0333030:intron 40.0%
!! AGAGAGTGTTAATCCAACTG+GGG - chr2_4:50575947-50575966 None:intergenic 40.0%
!! CAAGAGAGTGTTAATCCAAC+TGG - chr2_4:50575949-50575968 None:intergenic 40.0%
AAGCCAAAAGAAGCAAATGC+AGG - chr2_4:50576240-50576259 None:intergenic 40.0%
!!! CTTCTTTTGGCTTTCTCTCA+TGG + chr2_4:50576247-50576266 Msa0333030:intron 40.0%
TGTCAAGGTAGAAAAGCTTG+TGG + chr2_4:50576318-50576337 Msa0333030:CDS 40.0%
TAGGCGACATTGAAAAACGA+AGG + chr2_4:50576398-50576417 Msa0333030:CDS 40.0%
AATCATTGCCGCTAGATGTT+GGG + chr2_4:50576835-50576854 Msa0333030:CDS 40.0%
!! ATCTCTGCTGATTTCACTGT+CGG - chr2_4:50576937-50576956 None:intergenic 40.0%
CTAGCCGTTGAAATTGCATT+AGG + chr2_4:50576966-50576985 Msa0333030:CDS 40.0%
ACAGAGACAAGTAGGTCTTT+CGG + chr2_4:50577002-50577021 Msa0333030:CDS 40.0%
! GAGAAAATCACCCCTTTTGA+AGG + chr2_4:50577029-50577048 Msa0333030:CDS 40.0%
!! CCCTTTTGAAGGAAACAATG+TGG + chr2_4:50577040-50577059 Msa0333030:CDS 40.0%
TCTTTGTTGGCACTTGTTCT+TGG - chr2_4:50577071-50577090 None:intergenic 40.0%
AGAACAAGTGCCAACAAAGA+TGG + chr2_4:50577071-50577090 Msa0333030:CDS 40.0%
AGATTCAGTGCCATCTTTGT+TGG - chr2_4:50577084-50577103 None:intergenic 40.0%
! AACAAAGATGGCACTGAATC+TGG + chr2_4:50577083-50577102 Msa0333030:CDS 40.0%
! ATCTGGTGGAAGAGTTTTTG+AGG + chr2_4:50577100-50577119 Msa0333030:CDS 40.0%
!! AGCTTTAACCACGGATTTTC+TGG - chr2_4:50577521-50577540 None:intergenic 40.0%
! GTGGTGTAAAGCTTTAACCA+CGG - chr2_4:50577530-50577549 None:intergenic 40.0%
GTGGTTAAAGCTTTACACCA+CGG + chr2_4:50577529-50577548 Msa0333030:CDS 40.0%
TAAAGCTTTACACCACGGTT+TGG + chr2_4:50577534-50577553 Msa0333030:CDS 40.0%
TAATACAAACTCGTGGGCTT+AGG - chr2_4:50577622-50577641 None:intergenic 40.0%
GTCTCGAAGTTAGTACGCTA+CGG - chr2_4:50574908-50574927 None:intergenic 45.0%
TGTACTCTCCAATCTCAGGT+TGG + chr2_4:50575026-50575045 Msa0333030:CDS 45.0%
GTACTCTCCAATCTCAGGTT+GGG + chr2_4:50575027-50575046 Msa0333030:CDS 45.0%
TAACTAGCCCAACCTGAGAT+TGG - chr2_4:50575037-50575056 None:intergenic 45.0%
ACACTCCTCCATGATGGTAA+GGG - chr2_4:50575177-50575196 None:intergenic 45.0%
AACACTCCTCCATGATGGTA+AGG - chr2_4:50575178-50575197 None:intergenic 45.0%
! AGGGTTTTACACAGTGGTGT+TGG + chr2_4:50575447-50575466 Msa0333030:CDS 45.0%
! CACAGTGGTGTTGGAAAAAC+AGG + chr2_4:50575456-50575475 Msa0333030:CDS 45.0%
!! AATCAGAGGCATCTCTGCAA+CGG - chr2_4:50575785-50575804 None:intergenic 45.0%
CTCTGATTGCAACTTGCAGT+CGG + chr2_4:50575797-50575816 Msa0333030:CDS 45.0%
TGTTTCAGTTTCACCCCAGT+TGG + chr2_4:50575931-50575950 Msa0333030:intron 45.0%
AGCAGTGCACTTTCTGTTAC+TGG + chr2_4:50576045-50576064 Msa0333030:intron 45.0%
GCAGTGCACTTTCTGTTACT+GGG + chr2_4:50576046-50576065 Msa0333030:intron 45.0%
TGTTACTGGGCAAAATTGCG+TGG + chr2_4:50576059-50576078 Msa0333030:intron 45.0%
GTTACTGGGCAAAATTGCGT+GGG + chr2_4:50576060-50576079 Msa0333030:intron 45.0%
TTGCGTGGGTCTCATTAAAC+AGG + chr2_4:50576074-50576093 Msa0333030:intron 45.0%
TGCGTGGGTCTCATTAAACA+GGG + chr2_4:50576075-50576094 Msa0333030:intron 45.0%
TGGGTCTCATTAAACAGGGA+GGG + chr2_4:50576079-50576098 Msa0333030:intron 45.0%
TCTCATTAAACAGGGAGGGA+TGG + chr2_4:50576083-50576102 Msa0333030:intron 45.0%
!! CGTTTTTCAATGTCGCCTAC+AGG - chr2_4:50576397-50576416 None:intergenic 45.0%
AAAGTAGGTACCTGCTCTGA+AGG + chr2_4:50576798-50576817 Msa0333030:CDS 45.0%
TATGTCCATTCCTTCAGAGC+AGG - chr2_4:50576811-50576830 None:intergenic 45.0%
GAATCATTGCCGCTAGATGT+TGG + chr2_4:50576834-50576853 Msa0333030:CDS 45.0%
TGACTTAGCACCAACTTCGT+TGG - chr2_4:50576871-50576890 None:intergenic 45.0%
!! GGTTGATTTTTGCAGTCCAC+AGG - chr2_4:50576903-50576922 None:intergenic 45.0%
! AAAGATGGCACTGAATCTGG+TGG + chr2_4:50577086-50577105 Msa0333030:CDS 45.0%
! GTGTCGTGCAAGACATTTTC+AGG + chr2_4:50577182-50577201 Msa0333030:CDS 45.0%
!! CTCCTTAACTTGTGCCCTTA+GGG - chr2_4:50577383-50577402 None:intergenic 45.0%
!!! CAGCTACGCTTTTTGAAGTC+TGG - chr2_4:50577495-50577514 None:intergenic 45.0%
AGCTGAATCCAGAAAATCCG+TGG + chr2_4:50577510-50577529 Msa0333030:CDS 45.0%
!!! TGGCCACTGTTTTTCAAGTG+TGG + chr2_4:50577554-50577573 Msa0333030:CDS 45.0%
GGAAAAAATCCGTGCCCATA+GGG - chr2_4:50577601-50577620 None:intergenic 45.0%
AGGAAAAAATCCGTGCCCAT+AGG - chr2_4:50577602-50577621 None:intergenic 45.0%
TACGCTACGGCTAATAGCTG+TGG - chr2_4:50574895-50574914 None:intergenic 50.0%
AAATTGCTGATGGCTTCGCC+TGG + chr2_4:50575060-50575079 Msa0333030:CDS 50.0%
!! TATGCATCTCAGAAGCGTCC+AGG - chr2_4:50575081-50575100 None:intergenic 50.0%
! TGCTCAGTGGTTTGCCCTAA+AGG + chr2_4:50575124-50575143 Msa0333030:CDS 50.0%
AGCTGTTGCCCTTACCATCA+TGG + chr2_4:50575166-50575185 Msa0333030:CDS 50.0%
TGTTGCCCTTACCATCATGG+AGG + chr2_4:50575169-50575188 Msa0333030:CDS 50.0%
CACGAAACACTCCTCCATGA+TGG - chr2_4:50575183-50575202 None:intergenic 50.0%
CGACTGCAAGTTGCAATCAG+AGG - chr2_4:50575799-50575818 None:intergenic 50.0%
GTGGGTCTCATTAAACAGGG+AGG + chr2_4:50576078-50576097 Msa0333030:intron 50.0%
GCTTGTGGTATCAGCCATTC+CGG + chr2_4:50576333-50576352 Msa0333030:CDS 50.0%
GGTATCAGCCATTCCGGATT+TGG + chr2_4:50576339-50576358 Msa0333030:CDS 50.0%
ATCAGCCATTCCGGATTTGG+TGG + chr2_4:50576342-50576361 Msa0333030:CDS 50.0%
AGTCTCCACCAAATCCGGAA+TGG - chr2_4:50576350-50576369 None:intergenic 50.0%
!! TTCCGGATTTGGTGGAGACT+TGG + chr2_4:50576350-50576369 Msa0333030:CDS 50.0%
GTCCAAGTCTCCACCAAATC+CGG - chr2_4:50576355-50576374 None:intergenic 50.0%
TTTGGTGGAGACTTGGACCA+AGG + chr2_4:50576357-50576376 Msa0333030:CDS 50.0%
TTGGTGGAGACTTGGACCAA+GGG + chr2_4:50576358-50576377 Msa0333030:CDS 50.0%
AGGTACGAATCCAAAGCCCT+TGG - chr2_4:50576377-50576396 None:intergenic 50.0%
!! GGCTTTGGATTCGTACCTGT+AGG + chr2_4:50576379-50576398 Msa0333030:CDS 50.0%
!! AGGTACCTGCTCTGAAGGAA+TGG + chr2_4:50576803-50576822 Msa0333030:CDS 50.0%
AACGCAGCTACCAACGAAGT+TGG + chr2_4:50576858-50576877 Msa0333030:CDS 50.0%
TAAGTCAGAGTGTGAGCCTG+TGG + chr2_4:50576884-50576903 Msa0333030:CDS 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG + chr2_4:50577378-50577397 Msa0333030:intron 50.0%
!! GCTCCTTAACTTGTGCCCTT+AGG - chr2_4:50577384-50577403 None:intergenic 50.0%
GAAAAACAGTGGCCAAACCG+TGG - chr2_4:50577549-50577568 None:intergenic 50.0%
TGCCCATAGGGAATAAGCCA+CGG - chr2_4:50577589-50577608 None:intergenic 50.0%
TGGCTTATTCCCTATGGGCA+CGG + chr2_4:50577589-50577608 Msa0333030:CDS 50.0%
CCTCTTCGATTGAGCTCACG+AGG - chr2_4:50575849-50575868 None:intergenic 55.0%
CCTCGTGAGCTCAATCGAAG+AGG + chr2_4:50575846-50575865 Msa0333030:CDS 55.0%
GAGACTTGGACCAAGGGCTT+TGG + chr2_4:50576364-50576383 Msa0333030:CDS 55.0%
GCTGCGTTCCCAACATCTAG+CGG - chr2_4:50576846-50576865 None:intergenic 55.0%
TCACTGTCGGCCCTATTGTC+TGG - chr2_4:50576924-50576943 None:intergenic 55.0%
AAGTGTGGTTTATGCGCCCG+TGG + chr2_4:50577569-50577588 Msa0333030:CDS 55.0%
GCCCGTGGCTTATTCCCTAT+GGG + chr2_4:50577584-50577603 Msa0333030:CDS 55.0%
GCCCATAGGGAATAAGCCAC+GGG - chr2_4:50577588-50577607 None:intergenic 55.0%
TGCAGTCGGTATCGTCGCCA+AGG + chr2_4:50575811-50575830 Msa0333030:CDS 60.0%
CGATTGAGCTCACGAGGCGT+CGG - chr2_4:50575843-50575862 None:intergenic 60.0%
CGCCCGTGGCTTATTCCCTA+TGG + chr2_4:50577583-50577602 Msa0333030:CDS 60.0%
!! CGAGGCGTCGGCACATTCCT+TGG - chr2_4:50575831-50575850 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 50574861 50577642 50574861 ID=Msa0333030;Name=Msa0333030
chr2_4 mRNA 50574861 50577642 50574861 ID=Msa0333030-mRNA-1;Parent=Msa0333030;Name=Msa0333030-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.66|0.57|0.71|1|1|7|0|427
chr2_4 exon 50574861 50574911 50574861 ID=Msa0333030-mRNA-1:exon:15083;Parent=Msa0333030-mRNA-1
chr2_4 exon 50575020 50575261 50575020 ID=Msa0333030-mRNA-1:exon:15084;Parent=Msa0333030-mRNA-1
chr2_4 exon 50575420 50575506 50575420 ID=Msa0333030-mRNA-1:exon:15085;Parent=Msa0333030-mRNA-1
chr2_4 exon 50575768 50575867 50575768 ID=Msa0333030-mRNA-1:exon:15086;Parent=Msa0333030-mRNA-1
chr2_4 exon 50576307 50576499 50576307 ID=Msa0333030-mRNA-1:exon:15087;Parent=Msa0333030-mRNA-1
chr2_4 exon 50576757 50577220 50576757 ID=Msa0333030-mRNA-1:exon:15088;Parent=Msa0333030-mRNA-1
chr2_4 exon 50577496 50577642 50577496 ID=Msa0333030-mRNA-1:exon:15089;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50574861 50574911 50574861 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50575020 50575261 50575020 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50575420 50575506 50575420 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50575768 50575867 50575768 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50576307 50576499 50576307 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50576757 50577220 50576757 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
chr2_4 CDS 50577496 50577642 50577496 ID=Msa0333030-mRNA-1:cds;Parent=Msa0333030-mRNA-1
Gene Sequence

>Msa0333030

ATGCGGTTAATAACTAGATCAGGTGCTAGTACCACAGCTATTAGCCGTAGCGTATACTGTACTCTCCAATCTCAGGTTGGGCTAGTTAATCAAATTGCTGATGGCTTCGCCTGGACGCTTCTGAGATGCATACATGATGACCAAAAGGTTCATTCTGCTCAGTGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAGGAGTGTTTCGTGTCAATGCTAGATCTAAGAACAGGCATCCACATGATACCCCAAGTTTTATTCAATTGGGGGTCTGATTTTGCTCGTCTGAATTTTCAAGGGTTTTACACAGTGGTGTTGGAAAAACAGGATGTGTTAATATCTGTAGCATCTATCAGAGTGCACGGGACTACCGTTGCAGAGATGCCTCTGATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGCCGACGCCTCGTGAGCTCAATCGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCGGATTTGGTGGAGACTTGGACCAAGGGCTTTGGATTCGTACCTGTAGGCGACATTGAAAAACGAAGGTTAAAGAAAAACAACTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAATCCTTGTATGGCAAGAAGAAAGATGAAGGATTGTGTGATCAATCAACTTTAGCAACAGATGAATCATTCAAAGTAGGTACCTGCTCTGAAGGAATGGACATAGCTGAATCATTGCCGCTAGATGTTGGGAACGCAGCTACCAACGAAGTTGGTGCTAAGTCAGAGTGTGAGCCTGTGGACTGCAAAAATCAACCAGACAATAGGGCCGACAGTGAAATCAGCAGAGATGATAATATTCTAGCCGTTGAAATTGCATTAGGAGATGAAGAATCAACAGAGACAAGTAGGTCTTTCGGTGAAGAGAAAATCACCCCTTTTGAAGGAAACAATGTGGAGGAACCAAGAACAAGTGCCAACAAAGATGGCACTGAATCTGGTGGAAGAGTTTTTGAGGACAAGAATATCAATATAGGTGAAGTAAAGGAAAATGATTTGCATGAACATGTTTCAAATGTGTCGTGCAAGACATTTTCAGGCAACAATTTTGACACAACTTCAAAAAGCGTAGCTGAATCCAGAAAATCCGTGGTTAAAGCTTTACACCACGGTTTGGCCACTGTTTTTCAAGTGTGGTTTATGCGCCCGTGGCTTATTCCCTATGGGCACGGATTTTTTCCTAAGCCCACGAGTTTGTATTAA

Protein sequence

>Msa0333030

MRLITRSGASTTAISRSVYCTLQSQVGLVNQIADGFAWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDLRTGIHMIPQVLFNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRRLVSSIEEMLISVKVEKLVVSAIPDLVETWTKGFGFVPVGDIEKRRLKKNNLMVFPGTVLLEKSLYGKKKDEGLCDQSTLATDESFKVGTCSEGMDIAESLPLDVGNAATNEVGAKSECEPVDCKNQPDNRADSEISRDDNILAVEIALGDEESTETSRSFGEEKITPFEGNNVEEPRTSANKDGTESGGRVFEDKNINIGEVKENDLHEHVSNVSCKTFSGNNFDTTSKSVAESRKSVVKALHHGLATVFQVWFMRPWLIPYGHGFFPKPTSLY*