AlfalfaGEDB | Msa0080080

M. sativa cultivar zhongmu-4 / Msa0080080

KEGG: -
GO: -
PFAM: PF00096.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080080	XP_024638415.1	98.493	531	5	3	1	529	1	530	0.0	1071

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080080	sp\|Q9SCQ6\|IDD2_ARATH	58.044	317	99	5	62	350	34	344	2.43e-115	351

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080080	A0A396JWU8	98.493	531	5	3	1	529	1	530	0.0	1071

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TFs/TRs:

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Gene ID	Type	Classification
Msa0080080	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0080080	Msa0172640	0.968147	2.890395e-128	-8.615850e-47
Msa0080080	Msa0945540	0.963613	2.669579e-122	-8.615850e-47
Msa0080080	Msa1405050	0.974294	6.645556e-138	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080080	MtrunA17_Chr1g0191991	98.493	531	5	3	1	529	1	530	0.0	1071
Msa0080080	MtrunA17_Chr7g0268961	53.721	430	163	12	72	481	32	445	2.08e-134	399
Msa0080080	MtrunA17_Chr2g0330171	60.841	309	89	5	50	348	34	320	2.38e-122	367
Msa0080080	MtrunA17_Chr8g0342421	61.238	307	88	6	60	349	60	352	2.42e-118	358
Msa0080080	MtrunA17_Chr1g0185121	57.225	346	107	11	62	388	40	363	9.33e-118	354
Msa0080080	MtrunA17_Chr8g0373541	83.422	187	26	1	39	225	15	196	2.68e-116	353
Msa0080080	MtrunA17_Chr4g0040571	51.752	371	101	10	59	351	36	406	1.09e-113	346
Msa0080080	MtrunA17_Chr7g0263941	55.821	335	117	5	30	358	3	312	2.38e-113	342
Msa0080080	MtrunA17_Chr4g0029521	44.396	455	187	15	60	480	36	458	7.40e-109	333
Msa0080080	MtrunA17_Chr1g0162971	51.190	336	103	6	62	347	41	365	1.17e-106	326

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080080	AT3G50700.1	58.044	317	99	5	62	350	34	344	2.47e-116	351
Msa0080080	AT5G44160.1	56.698	321	106	7	57	346	31	349	7.20e-114	345
Msa0080080	AT1G03840.1	88.304	171	19	1	57	226	35	205	3.27e-113	345
Msa0080080	AT1G03840.2	87.135	171	19	2	57	226	35	203	1.27e-109	336
Msa0080080	AT2G02080.1	41.719	477	174	14	59	481	51	477	4.52e-106	327
Msa0080080	AT2G02080.4	41.719	477	174	14	59	481	51	477	4.52e-106	327
Msa0080080	AT2G02080.5	41.719	477	174	14	59	481	51	477	4.52e-106	327
Msa0080080	AT2G02080.3	41.719	477	174	14	59	481	51	477	4.52e-106	327
Msa0080080	AT1G14580.1	79.412	170	35	0	55	224	46	215	1.01e-105	325
Msa0080080	AT1G14580.2	79.412	170	35	0	55	224	46	215	1.01e-105	325

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Find 146 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCACTTAGTTTGGT+TGG	0.442676	1_2:+58327315	Msa0080080:exon
AAAATACAAGAAACAGGCTT+TGG	0.391584	1_2:-58323229	None:intergenic
AAACACCACTTAGTTTGGTT+GGG	0.406309	1_2:+58327316	Msa0080080:three_prime_UTR
AAACGAGATTTGAGATTGGT+TGG	0.484142	1_2:-58326430	None:intergenic
AAAGCTCATTCCAAAATATG+TGG	0.572953	1_2:+58324852	Msa0080080:CDS
AACAACATCTTGGAAGAAAA+TGG	0.256543	1_2:+58326665	Msa0080080:CDS
AACACCACTTAGTTTGGTTG+GGG	0.514202	1_2:+58327317	Msa0080080:three_prime_UTR
AACAGAAAAGATGGGATTTG+TGG	0.453016	1_2:-58323325	None:intergenic
AACATCACAAGTTGTGATAG+TGG	0.515608	1_2:+58323507	Msa0080080:CDS
AACATTAGTGGAAGTAAGGG+TGG	0.535289	1_2:+58327106	Msa0080080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACAAGAAACAGGCTT+TGG	-	chr1_2:58323232-58323251	None:intergenic	30.0%
GGCATAAAAATACAAGAAAC+AGG	-	chr1_2:58323238-58323257	None:intergenic	30.0%
CAACAAACTGATCAAATACT+TGG	+	chr1_2:58323573-58323592	Msa0080080:CDS	30.0%
TTTGTTGAAGTATGAGAATG+TGG	-	chr1_2:58323612-58323631	None:intergenic	30.0%
AATAAATTACCTGGATTTCC+TGG	-	chr1_2:58323705-58323724	None:intergenic	30.0%
TAGAATATGATGCTTGGAAT+TGG	-	chr1_2:58323949-58323968	None:intergenic	30.0%
TATAGGCTCCATGAAATTAA+AGG	+	chr1_2:58324206-58324225	Msa0080080:intron	30.0%
TTAAAGGATAAGACTTGATC+TGG	+	chr1_2:58324222-58324241	Msa0080080:intron	30.0%
GAAGACAAAGATCTATATAG+TGG	+	chr1_2:58324280-58324299	Msa0080080:intron	30.0%
AGACAAAGATCTATATAGTG+GGG	+	chr1_2:58324282-58324301	Msa0080080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	58323211	58327756	58323211	ID=Msa0080080;Name=Msa0080080
chr1_2	mRNA	58323211	58327756	58323211	ID=Msa0080080-mRNA-1;Parent=Msa0080080;Name=Msa0080080-mRNA-1;_AED=0.26;_eAED=0.26;_QI=290\|1\|1\|1\|1\|1\|3\|441\|529
chr1_2	exon	58323211	58323714	58323211	ID=Msa0080080-mRNA-1:exon:18638;Parent=Msa0080080-mRNA-1
chr1_2	exon	58324520	58324916	58324520	ID=Msa0080080-mRNA-1:exon:18639;Parent=Msa0080080-mRNA-1
chr1_2	exon	58326337	58327756	58326337	ID=Msa0080080-mRNA-1:exon:18640;Parent=Msa0080080-mRNA-1
chr1_2	five_prime_UTR	58323211	58323500	58323211	ID=Msa0080080-mRNA-1:five_prime_utr;Parent=Msa0080080-mRNA-1
chr1_2	CDS	58323501	58323714	58323501	ID=Msa0080080-mRNA-1:cds;Parent=Msa0080080-mRNA-1
chr1_2	CDS	58324520	58324916	58324520	ID=Msa0080080-mRNA-1:cds;Parent=Msa0080080-mRNA-1
chr1_2	CDS	58326337	58327315	58326337	ID=Msa0080080-mRNA-1:cds;Parent=Msa0080080-mRNA-1
chr1_2	three_prime_UTR	58327316	58327756	58327316	ID=Msa0080080-mRNA-1:three_prime_utr;Parent=Msa0080080-mRNA-1

Gene Sequence

>Msa0080080

ATGTCAAACATCACAAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACAAGAGAAGATGCAGTTAAACAGCAACAAACTGATCAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAAATAATAATAATAATAATAGCAATGGTTCTAACACAGATTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGCAACAAGGGTTTTCAAAGAGACCAAAATCTTCAACTGCACCGAAGAGGACACAACTTGCCTTGGAAGCTAAAACAAAGAACTAGTGCAGAAATTAGAAAGAGGGTTTATGTTTGTCCTGAACCTTCATGTGTTCACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGTATCAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACTCACAGAGCATTCTGTGACGCATTAGCTGAAGAGAACAACAAAGCAAACGAAGGAGTACTATCAAATTTGCAACACCAACCAATCTCAAATCTCGTTTCCTCATTACCTTTAAACCCCATTATTAACCCTCAAATTGGTGGAACTGTATCAGAATTCAACAACCATTCAGATCACAAGCTTCCATTATCATCACCTCATGAACTCATGTCAGTAGTGCCACCAAAACCCTTCAACAACAACATATTCACTAGAAGCCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAACATCTTGGAAGAAAATGGATCACTCCATTTATCTGCTGCAACTTCACCTCACATGTCAGCCACTGCATTGCTACAGAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCAGGTATCATGACGGATAAAACTACCGTTGCTACAAACATGATGGCGCCGCCGCAGTTTGGTGTAGTGCAACAACAAGGACATGCTTTCATGAACCACTACATGCAACAGCAACAACAACACTACAATAATAATTTCAATGCAAATGGGATAATAAATGGAGGAGGCGTTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCGAAGATCATTGAACAAAACAATCAAACTCAAAGCATTAATAGTGTTGTTGGAGGTGGAGGAGGAGGTGCATCAAGTAATAGTAATAATGTTATGAACATTAGTGGAAGTAAGGGTGGTGGAGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGAGGTGCACATAGTAATTTCTATGGAGGGGGTACACAACAACAACAGGCAGAAAGTGCAGCAGCAGCAGCAGCTGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGGAGGATTTGAATCTTTTTCAGCAACAAGCAACATTTGA

Protein sequence

>Msa0080080

MSNITSCDSGSFSTENTREDAVKQQQTDQILGQFHSPHSHTSTNNNNNNSNGSNTDLQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVLSNLQHQPISNLVSSLPLNPIINPQIGGTVSEFNNHSDHKLPLSSPHELMSVVPPKPFNNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGIMTDKTTVATNMMAPPQFGVVQQQGHAFMNHYMQQQQQHYNNNFNANGIINGGGVGMNGVDMFNAILDQSKALSKIIEQNNQTQSINSVVGGGGGGASSNSNNVMNISGSKGGGDVMTLDLLGIGGGGAHSNFYGGGTQQQQAESAAAAAADEVWRNWSTKNGGFESFSATSNI*