AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0080080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080080 MtrunA17_Chr1g0191991 98.493 531 5 3 1 529 1 530 0.0 1071
Msa0080080 MtrunA17_Chr7g0268961 53.721 430 163 12 72 481 32 445 2.08e-134 399
Msa0080080 MtrunA17_Chr2g0330171 60.841 309 89 5 50 348 34 320 2.38e-122 367
Msa0080080 MtrunA17_Chr8g0342421 61.238 307 88 6 60 349 60 352 2.42e-118 358
Msa0080080 MtrunA17_Chr1g0185121 57.225 346 107 11 62 388 40 363 9.33e-118 354
Msa0080080 MtrunA17_Chr8g0373541 83.422 187 26 1 39 225 15 196 2.68e-116 353
Msa0080080 MtrunA17_Chr4g0040571 51.752 371 101 10 59 351 36 406 1.09e-113 346
Msa0080080 MtrunA17_Chr7g0263941 55.821 335 117 5 30 358 3 312 2.38e-113 342
Msa0080080 MtrunA17_Chr4g0029521 44.396 455 187 15 60 480 36 458 7.40e-109 333
Msa0080080 MtrunA17_Chr1g0162971 51.190 336 103 6 62 347 41 365 1.17e-106 326
Msa0080080 MtrunA17_Chr1g0181381 80.925 173 32 1 62 233 38 210 2.65e-106 327
Msa0080080 MtrunA17_Chr1g0151351 80.702 171 32 1 53 222 32 202 1.78e-105 323
Msa0080080 MtrunA17_Chr1g0199101 83.333 162 27 0 60 221 45 206 2.16e-105 326
Msa0080080 MtrunA17_Chr1g0163001 76.087 184 42 1 43 224 22 205 5.84e-105 324
Msa0080080 MtrunA17_Chr1g0210821 84.076 157 25 0 65 221 47 203 4.11e-103 321
Msa0080080 MtrunA17_Chr2g0326381 68.116 207 60 4 61 261 31 237 4.17e-101 310
Msa0080080 MtrunA17_Chr3g0141431 78.882 161 33 1 59 218 19 179 5.98e-97 300
Msa0080080 MtrunA17_Chr2g0324991 90.076 131 13 0 73 203 3 133 6.75e-88 267
Msa0080080 MtrunA17_Chr6g0479921 46.043 278 125 6 62 336 29 284 1.70e-74 243
Msa0080080 MtrunA17_Chr8g0375521 64.744 156 53 2 62 215 27 182 4.24e-72 236
Msa0080080 MtrunA17_Chr1g0200421 33.929 168 95 4 74 225 234 401 8.67e-24 104
Msa0080080 MtrunA17_Chr2g0320341 34.194 155 88 3 71 211 224 378 2.39e-23 102
Msa0080080 MtrunA17_Chr3g0123941 33.696 184 98 4 72 231 118 301 4.58e-23 100
Msa0080080 MtrunA17_Chr8g0352011 35.106 188 96 8 58 227 152 331 2.82e-21 95.1
Msa0080080 MtrunA17_Chr8g0382121 35.811 148 84 5 75 211 109 256 5.94e-21 93.6
Msa0080080 MtrunA17_Chr7g0258011 35.404 161 84 7 85 227 183 341 9.61e-21 93.6
Msa0080080 MtrunA17_Chr5g0422571 35.542 166 88 7 73 227 102 259 4.87e-20 90.9
Msa0080080 MtrunA17_Chr1g0173841 34.104 173 88 8 73 227 216 380 4.06e-19 89.4
Msa0080080 MtrunA17_Chr1g0198651 33.520 179 90 8 73 230 103 273 5.83e-19 87.4
Msa0080080 MtrunA17_Chr2g0328921 35.542 166 87 8 59 214 127 282 2.02e-18 86.3
Msa0080080 MtrunA17_Chr4g0053341 33.113 151 91 4 73 214 69 218 6.54e-18 83.2
Msa0080080 MtrunA17_Chr4g0026521 36.429 140 77 6 85 214 125 262 7.61e-18 84.3
Msa0080080 MtrunA17_Chr2g0321291 36.054 147 82 6 78 214 133 277 1.04e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0080080 AT3G50700.1 58.044 317 99 5 62 350 34 344 2.47e-116 351
Msa0080080 AT5G44160.1 56.698 321 106 7 57 346 31 349 7.20e-114 345
Msa0080080 AT1G03840.1 88.304 171 19 1 57 226 35 205 3.27e-113 345
Msa0080080 AT1G03840.2 87.135 171 19 2 57 226 35 203 1.27e-109 336
Msa0080080 AT2G02080.1 41.719 477 174 14 59 481 51 477 4.52e-106 327
Msa0080080 AT2G02080.4 41.719 477 174 14 59 481 51 477 4.52e-106 327
Msa0080080 AT2G02080.5 41.719 477 174 14 59 481 51 477 4.52e-106 327
Msa0080080 AT2G02080.3 41.719 477 174 14 59 481 51 477 4.52e-106 327
Msa0080080 AT1G14580.1 79.412 170 35 0 55 224 46 215 1.01e-105 325
Msa0080080 AT1G14580.2 79.412 170 35 0 55 224 46 215 1.01e-105 325
Msa0080080 AT1G55110.3 82.840 169 28 1 58 225 59 227 1.46e-105 324
Msa0080080 AT1G55110.1 82.840 169 28 1 58 225 59 227 1.46e-105 324
Msa0080080 AT1G55110.2 82.840 169 28 1 58 225 59 227 1.46e-105 324
Msa0080080 AT1G14580.3 79.412 170 35 0 55 224 60 229 1.83e-105 324
Msa0080080 AT3G13810.6 85.294 170 22 2 62 230 51 218 8.58e-105 323
Msa0080080 AT3G13810.4 85.294 170 22 2 62 230 70 237 1.06e-104 323
Msa0080080 AT3G13810.1 85.294 170 22 2 62 230 70 237 1.06e-104 323
Msa0080080 AT3G13810.5 85.294 170 22 2 62 230 65 232 1.11e-104 323
Msa0080080 AT4G02670.1 77.473 182 39 2 53 233 45 225 1.44e-104 319
Msa0080080 AT3G45260.2 83.537 164 26 1 62 224 39 202 1.45e-104 321
Msa0080080 AT3G45260.1 83.537 164 26 1 62 224 39 202 1.45e-104 321
Msa0080080 AT4G02670.2 77.473 182 39 2 53 233 47 227 1.50e-104 319
Msa0080080 AT5G44160.2 55.410 305 104 6 72 346 8 310 1.53e-104 320
Msa0080080 AT5G03150.1 84.472 161 24 1 62 221 53 213 2.41e-101 315
Msa0080080 AT5G60470.2 81.098 164 30 1 62 224 44 207 2.78e-101 313
Msa0080080 AT5G60470.3 81.098 164 30 1 62 224 40 203 2.96e-101 313
Msa0080080 AT2G02070.2 80.368 163 32 0 62 224 52 214 5.46e-101 317
Msa0080080 AT2G02070.1 80.368 163 32 0 62 224 52 214 5.46e-101 317
Msa0080080 AT3G13810.3 85.535 159 20 2 73 230 68 224 6.87e-97 303
Msa0080080 AT3G13810.2 85.535 159 20 2 73 230 82 238 6.87e-97 303
Msa0080080 AT5G60470.1 74.566 173 39 2 57 224 26 198 7.17e-95 296
Msa0080080 AT2G02080.6 39.778 450 167 14 86 481 1 400 2.49e-90 284
Msa0080080 AT2G02080.2 39.778 450 167 14 86 481 1 400 2.49e-90 284
Msa0080080 AT1G68130.1 66.026 156 51 2 62 215 41 196 1.30e-73 240
Msa0080080 AT2G01940.1 61.538 169 63 2 51 217 33 201 3.54e-72 237
Msa0080080 AT1G25250.3 63.694 157 54 2 62 215 33 189 1.37e-71 233
Msa0080080 AT2G01940.3 60.588 170 64 3 51 217 33 202 3.03e-68 226
Msa0080080 AT1G25250.1 64.626 147 49 2 72 215 20 166 8.23e-68 223
Msa0080080 AT1G68130.2 65.455 110 36 2 108 215 1 110 8.37e-47 166
Msa0080080 AT2G01940.2 63.393 112 39 2 108 217 1 112 1.71e-45 164
Msa0080080 AT1G25250.2 62.162 111 39 2 108 215 1 111 1.42e-44 160
Msa0080080 AT5G22890.1 31.667 180 106 5 47 211 174 351 3.41e-23 101
Msa0080080 AT1G34370.3 33.951 162 85 4 71 214 14 171 5.02e-23 99.8
Msa0080080 AT1G34370.2 33.544 158 91 3 71 214 224 381 7.53e-23 102
Msa0080080 AT1G34370.1 33.544 158 91 3 71 214 224 381 7.53e-23 102
Msa0080080 AT1G13290.1 34.591 159 84 7 73 219 89 239 9.76e-19 87.4
Msa0080080 AT3G57670.1 32.370 173 91 7 73 227 205 369 1.60e-18 88.2
Msa0080080 AT3G20880.1 33.125 160 91 5 85 229 250 408 1.89e-18 88.2
Msa0080080 AT1G51220.1 33.113 151 85 5 73 214 166 309 4.68e-18 85.9
Msa0080080 AT1G08290.1 35.294 153 80 7 73 214 168 312 5.33e-17 82.8
Msa0080080 AT1G34790.1 32.667 150 89 5 75 214 129 276 7.42e-16 79.0

Find 146 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTTGTACCACATATTT+TGG 0.125409 1_2:-58324862 None:intergenic
AACATTTGAATACACATTTA+TGG 0.140693 1_2:-58327561 None:intergenic
TTCGGTGCAGTTGAAGATTT+TGG 0.237456 1_2:-58324614 None:intergenic
ACATAGCCAAATTAAGAAAA+AGG 0.238010 1_2:-58323482 None:intergenic
TGATATGTTTAATGCTATAT+TGG 0.247245 1_2:+58326970 Msa0080080:CDS
ATCAAATCATTGATATTAAT+TGG 0.250521 1_2:+58327471 Msa0080080:three_prime_UTR
TACTATTATTAACTATTTCT+TGG 0.251790 1_2:-58327342 None:intergenic
CCCATTATTAACCCTCAAAT+TGG 0.254900 1_2:+58326470 Msa0080080:CDS
AACAACATCTTGGAAGAAAA+TGG 0.256543 1_2:+58326665 Msa0080080:CDS
AATGCAAATGGGATAATAAA+TGG 0.269963 1_2:+58326923 Msa0080080:CDS
CCTCATCTCCACACCATAAA+AGG 0.270952 1_2:+58323268 Msa0080080:five_prime_UTR
ACCAATTTGAGGGTTAATAA+TGG 0.277668 1_2:-58326471 None:intergenic
ACATTTGAATACACATTTAT+GGG 0.280310 1_2:-58327560 None:intergenic
AGATTCAAATCCTCCATTCT+TGG 0.287816 1_2:-58327269 None:intergenic
ATGTTGTTGTTGAAGGGTTT+TGG 0.296073 1_2:-58326575 None:intergenic
CCAATTTGAGGGTTAATAAT+GGG 0.297467 1_2:-58326470 None:intergenic
GGGTTAATAATGGGGTTTAA+AGG 0.300726 1_2:-58326461 None:intergenic
TTTGTGGCTCTCATTTCCTT+TGG 0.301928 1_2:-58327721 Msa0080090:three_prime_UTR
TTTGAAAACACCACTTAGTT+TGG 0.303887 1_2:+58327311 Msa0080080:exon
GTGAAGTTGCAGCAGATAAA+TGG 0.308637 1_2:-58326694 None:intergenic
TTGTGGCTCTCATTTCCTTT+GGG 0.313829 1_2:-58327720 Msa0080090:three_prime_UTR
AATAAATTACCTGGATTTCC+TGG 0.317784 1_2:-58323702 None:intergenic
AATAATAATTTCAATGCAAA+TGG 0.327404 1_2:+58326911 Msa0080080:CDS
CTGATGAGGTTTGGAGAAAT+TGG 0.331929 1_2:+58327242 Msa0080080:CDS
TTTGTAGCCATTAGTGTTGT+TGG 0.339715 1_2:-58324549 None:intergenic
ACTCTTGTCTTGAGAAACTA+TGG 0.354103 1_2:-58323393 None:intergenic
CAGCAGCAGCTGATGAGGTT+TGG 0.362969 1_2:+58327233 Msa0080080:CDS
CAAAGCATTAATAGTGTTGT+TGG 0.386850 1_2:+58327040 Msa0080080:CDS
TCCTGTTCAATATTCACGTT+CGG 0.390930 1_2:+58327616 Msa0080080:three_prime_UTR
AAAATACAAGAAACAGGCTT+TGG 0.391584 1_2:-58323229 None:intergenic
GGTGCACATAGTAATTTCTA+TGG 0.395859 1_2:+58327172 Msa0080080:CDS
CTTAATTGAAACAGAAAAGA+TGG 0.398347 1_2:-58323334 None:intergenic
AGATCACCAAGTGCTCTTGC+AGG 0.399590 1_2:-58324735 None:intergenic
GTTGTTGGAGGTGGAGGAGG+AGG 0.400532 1_2:+58327055 Msa0080080:CDS
GGAGGAGGCGTTGGAATGAA+TGG 0.403069 1_2:+58326944 Msa0080080:CDS
AAACACCACTTAGTTTGGTT+GGG 0.406309 1_2:+58327316 Msa0080080:three_prime_UTR
TGTGTATTCAAATGTTATAA+TGG 0.406710 1_2:+58327568 Msa0080080:three_prime_UTR
GCTACAGAAAGCTGCTCAAA+TGG 0.409352 1_2:+58326739 Msa0080080:CDS
TGCTATATTGGATCAAAGTA+AGG 0.411463 1_2:+58326982 Msa0080080:CDS
AATAATGTTATGAACATTAG+TGG 0.411466 1_2:+58327094 Msa0080080:CDS
TGGAGATGAGGGGTGCTTGT+TGG 0.412864 1_2:-58323256 None:intergenic
TATGAACATTAGTGGAAGTA+AGG 0.415131 1_2:+58327102 Msa0080080:CDS
AATAGTGTTGTTGGAGGTGG+AGG 0.417136 1_2:+58327049 Msa0080080:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_2:+58324829 Msa0080080:CDS
AGTGAATATGTTGTTGTTGA+AGG 0.428537 1_2:-58326582 None:intergenic
AGTGTTGTTGGAGGTGGAGG+AGG 0.433876 1_2:+58327052 Msa0080080:CDS
AGAGCACTTGGTGATCTTAC+TGG 0.434819 1_2:+58324741 Msa0080080:CDS
ATAAAAGGAGGAGAGTTTCC+TGG 0.442673 1_2:+58323283 Msa0080080:five_prime_UTR
AAAACACCACTTAGTTTGGT+TGG 0.442676 1_2:+58327315 Msa0080080:exon
ATGATGGCGCCGCCGCAGTT+TGG 0.444697 1_2:+58326824 Msa0080080:CDS
AACAGAAAAGATGGGATTTG+TGG 0.453016 1_2:-58323325 None:intergenic
CAAGTGCTCTTGCAGGGTTA+TGG 0.453384 1_2:-58324728 None:intergenic
TGGTGAACACATGAAGGTTC+AGG 0.454246 1_2:-58324708 None:intergenic
TCCGAACGTGAATATTGAAC+AGG 0.454569 1_2:-58327617 None:intergenic
AACCACCTCTTAAGAAGAAA+AGG 0.456615 1_2:+58323673 Msa0080080:CDS
CAACAAACTGATCAAATACT+TGG 0.458193 1_2:+58323573 Msa0080080:CDS
AGTTCATGAGGTGATGATAA+TGG 0.461625 1_2:-58326536 None:intergenic
GAGGAAACGAGATTTGAGAT+TGG 0.462517 1_2:-58326434 None:intergenic
ACTATCACCAACAACACTAA+TGG 0.464691 1_2:+58324542 Msa0080080:CDS
AAGGCAAGTTGTGTCCTCTT+CGG 0.471989 1_2:-58324632 None:intergenic
TGTAATGACACTGGATTTGT+TGG 0.477727 1_2:+58327135 Msa0080080:CDS
ATAATAAATGGAGGAGGCGT+TGG 0.478927 1_2:+58326935 Msa0080080:CDS
AAACGAGATTTGAGATTGGT+TGG 0.484142 1_2:-58326430 None:intergenic
AGAAATTGGTCAACCAAGAA+TGG 0.485147 1_2:+58327256 Msa0080080:CDS
GATTTGTTGGGGATAGGAGG+AGG 0.488522 1_2:+58327148 Msa0080080:CDS
TAATTCACTCAACAACATCT+TGG 0.492063 1_2:+58326655 Msa0080080:CDS
AGGAACCTACCAGGAAATCC+AGG 0.493855 1_2:+58323693 Msa0080080:CDS
CTGGATTTGTTGGGGATAGG+AGG 0.495376 1_2:+58327145 Msa0080080:CDS
GATACAGTTCCACCAATTTG+AGG 0.499903 1_2:-58326482 None:intergenic
CATAACCCTGCAAGAGCACT+TGG 0.500225 1_2:+58324729 Msa0080080:CDS
ATACAGTTCCACCAATTTGA+GGG 0.501003 1_2:-58326481 None:intergenic
ATTATTAACCCTCAAATTGG+TGG 0.502270 1_2:+58326473 Msa0080080:CDS
GTGTCATGGTCGAAAGGAAG+GGG 0.506196 1_2:-58327448 None:intergenic
AGTGCTATCACTTCAGCACT+TGG 0.507626 1_2:-58324522 None:intergenic
CTACAGAAAGCTGCTCAAAT+GGG 0.511542 1_2:+58326740 Msa0080080:CDS
AACACCACTTAGTTTGGTTG+GGG 0.514202 1_2:+58327317 Msa0080080:three_prime_UTR
ATTAATAGTGTTGTTGGAGG+TGG 0.514406 1_2:+58327046 Msa0080080:CDS
CGCCATCATGTTTGTAGCAA+CGG 0.514892 1_2:-58326810 None:intergenic
TTTGAACTGAGTTGAAGAGA+AGG 0.515296 1_2:-58326632 None:intergenic
AACATCACAAGTTGTGATAG+TGG 0.515608 1_2:+58323507 Msa0080080:CDS
ATGTGTCATGGTCGAAAGGA+AGG 0.516071 1_2:-58327450 None:intergenic
GTTGTTGCTGTTGCATGTAG+TGG 0.516364 1_2:-58326880 None:intergenic
GTAATGACACTGGATTTGTT+GGG 0.517404 1_2:+58327136 Msa0080080:CDS
GAGATGAAGTTGATGATGAA+AGG 0.518078 1_2:-58326610 None:intergenic
GTGAATATGTTGTTGTTGAA+GGG 0.519299 1_2:-58326581 None:intergenic
AATTACCTGGATTTCCTGGT+AGG 0.520896 1_2:-58323698 None:intergenic
ATTCCAAAATATGTGGTACA+AGG 0.520937 1_2:+58324859 Msa0080080:CDS
TTAATTGAAACAGAAAAGAT+GGG 0.527878 1_2:-58323333 None:intergenic
GAAGAGGACACAACTTGCCT+TGG 0.527889 1_2:+58324634 Msa0080080:CDS
ATAATAATTTCAATGCAAAT+GGG 0.528123 1_2:+58326912 Msa0080080:CDS
ACATACATACCTGGAAAAGA+TGG 0.528499 1_2:-58324904 None:intergenic
AACATTAGTGGAAGTAAGGG+TGG 0.535289 1_2:+58327106 Msa0080080:CDS
CACATAGTAATTTCTATGGA+GGG 0.535940 1_2:+58327176 Msa0080080:CDS
TTTGTTGAAGTATGAGAATG+TGG 0.537355 1_2:-58323609 None:intergenic
ACTGTGAGTAATAATAATGC+AGG 0.538175 1_2:+58326767 Msa0080080:CDS
CAATTTGAGGGTTAATAATG+GGG 0.543880 1_2:-58326469 None:intergenic
CTAGTGCAGAAATTAGAAAG+AGG 0.551088 1_2:+58324673 Msa0080080:CDS
AATGGGGTTTAAAGGTAATG+AGG 0.552566 1_2:-58326453 None:intergenic
ATTAGTGGAAGTAAGGGTGG+TGG 0.553858 1_2:+58327109 Msa0080080:CDS
AGCATTAATAGTGTTGTTGG+AGG 0.564315 1_2:+58327043 Msa0080080:CDS
GCACATAGTAATTTCTATGG+AGG 0.570101 1_2:+58327175 Msa0080080:CDS
TTGTTGGGGATAGGAGGAGG+AGG 0.571045 1_2:+58327151 Msa0080080:CDS
AAAGCTCATTCCAAAATATG+TGG 0.572953 1_2:+58324852 Msa0080080:CDS
ACACTGGATTTGTTGGGGAT+AGG 0.573986 1_2:+58327142 Msa0080080:CDS
TAGTGCAGAAATTAGAAAGA+GGG 0.575321 1_2:+58324674 Msa0080080:CDS
TACCGTTGCTACAAACATGA+TGG 0.575806 1_2:+58326808 Msa0080080:CDS
CATAGTAATTTCTATGGAGG+GGG 0.576896 1_2:+58327178 Msa0080080:CDS
CGTATGTGAAATATGCAACA+AGG 0.589045 1_2:+58324578 Msa0080080:CDS
ATGAACATTAGTGGAAGTAA+GGG 0.589532 1_2:+58327103 Msa0080080:CDS
GAACGTGAATATTGAACAGG+AGG 0.590078 1_2:-58327614 None:intergenic
TGTGTCATGGTCGAAAGGAA+GGG 0.590566 1_2:-58327449 None:intergenic
ACATAGTAATTTCTATGGAG+GGG 0.591190 1_2:+58327177 Msa0080080:CDS
GATCACCAAGTGCTCTTGCA+GGG 0.594376 1_2:-58324734 None:intergenic
TGTCATGGTCGAAAGGAAGG+GGG 0.594893 1_2:-58327447 None:intergenic
ACATCACAAGTTGTGATAGT+GGG 0.595444 1_2:+58323508 Msa0080080:CDS
GGGTTATGGTGAACACATGA+AGG 0.595455 1_2:-58324714 None:intergenic
AAGAAGAAAAGGAACCTACC+AGG 0.596110 1_2:+58323684 Msa0080080:CDS
ATCAATGATTTGATGTGTCA+TGG 0.599292 1_2:-58327462 None:intergenic
GGCTCCCCAACCAAACTAAG+TGG 0.601479 1_2:-58327321 None:intergenic
AGCTTTCTGTAGCAATGCAG+TGG 0.610000 1_2:-58326729 None:intergenic
TTCCAAAATATGTGGTACAA+GGG 0.611826 1_2:+58324860 Msa0080080:CDS
ACAAGCTATCTAGGAAGCAG+AGG 0.613878 1_2:-58323360 None:intergenic
ATGGAAGCTTGTGATCTGAA+TGG 0.617097 1_2:-58326517 None:intergenic
AATCTTCAACTGCACCGAAG+AGG 0.621618 1_2:+58324618 Msa0080080:CDS
TTATGTGTAGACTCTTATGA+TGG 0.635701 1_2:+58327536 Msa0080080:three_prime_UTR
TAATGACACTGGATTTGTTG+GGG 0.637157 1_2:+58327137 Msa0080080:CDS
AATTGGTCAACCAAGAATGG+AGG 0.638927 1_2:+58327259 Msa0080080:CDS
GTATGTGAAATATGCAACAA+GGG 0.639897 1_2:+58324579 Msa0080080:CDS
AATGGGATAATAAATGGAGG+AGG 0.644754 1_2:+58326929 Msa0080080:CDS
TGGTGGAGATGTAATGACAC+TGG 0.649106 1_2:+58327126 Msa0080080:CDS
GTCATGGTCGAAAGGAAGGG+GGG 0.655496 1_2:-58327446 None:intergenic
TGCACTACACCAAACTGCGG+CGG 0.655717 1_2:-58326833 None:intergenic
GCAAATGGGATAATAAATGG+AGG 0.656300 1_2:+58326926 Msa0080080:CDS
TCTACACATAACACTTACAC+TGG 0.657671 1_2:-58327524 None:intergenic
GATGGGATTTGTGGAACCAG+AGG 0.657823 1_2:-58323316 None:intergenic
TTTGATGTGTCATGGTCGAA+AGG 0.659881 1_2:-58327454 None:intergenic
TAATAATGCAGGTATCATGA+CGG 0.660595 1_2:+58326778 Msa0080080:CDS
CATCTCCACACCATAAAAGG+AGG 0.660797 1_2:+58323271 Msa0080080:five_prime_UTR
AGGGAATACAAATGTGACTG+TGG 0.667636 1_2:+58324879 Msa0080080:CDS
TTTGGTGTAGTGCAACAACA+AGG 0.680990 1_2:+58326842 Msa0080080:CDS
CTCTTGACTTGAGAACCCAA+AGG 0.695930 1_2:+58327705 Msa0080080:three_prime_UTR
GAGAACAACAAAGCAAACGA+AGG 0.700937 1_2:+58326386 Msa0080080:CDS
ACTACTGACATGAGTTCATG+AGG 0.716939 1_2:-58326548 None:intergenic
TGTTGCACTACACCAAACTG+CGG 0.718918 1_2:-58326836 None:intergenic
AACGTGAATATTGAACAGGA+GGG 0.719567 1_2:-58327613 None:intergenic
AATGCAGTGGCTGACATGTG+AGG 0.731584 1_2:-58326716 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATTAAATTTATT+TGG + chr1_2:58326113-58326132 Msa0080080:intron 0.0%
!! ATAAACTAAATAGAAAAAAA+AGG + chr1_2:58323443-58323462 Msa0080080:five_prime_UTR 10.0%
!! TAAACTAAATAGAAAAAAAA+GGG + chr1_2:58323444-58323463 Msa0080080:five_prime_UTR 10.0%
!! AATAATAATAATAATAGCAA+TGG + chr1_2:58323633-58323652 Msa0080080:CDS 10.0%
!! TAAAATAAATGATGAATTAT+TGG + chr1_2:58324342-58324361 Msa0080080:intron 10.0%
!! CAATATGCAAATAAAATTAA+AGG - chr1_2:58323787-58323806 None:intergenic 15.0%
!! TGTTACATAATTAAAATCAA+GGG - chr1_2:58323825-58323844 None:intergenic 15.0%
!! TTGTTACATAATTAAAATCA+AGG - chr1_2:58323826-58323845 None:intergenic 15.0%
!!! TACATAATTATTGTTATTCA+TGG + chr1_2:58323913-58323932 Msa0080080:intron 15.0%
!!! ACATAATTATTGTTATTCAT+GGG + chr1_2:58323914-58323933 Msa0080080:intron 15.0%
!!! TTTTTTTTTTTACCTCATAT+TGG - chr1_2:58324137-58324156 None:intergenic 15.0%
!! GTAAAAAAAAAAATAGACAA+TGG + chr1_2:58324144-58324163 Msa0080080:intron 15.0%
!! TTTAATTAAGACATTTCTAT+AGG + chr1_2:58324189-58324208 Msa0080080:intron 15.0%
!!! TTTTTAACTTTTTGTAGTTT+AGG + chr1_2:58325338-58325357 Msa0080080:intron 15.0%
!! GAAAATAAAATACTATATGA+GGG - chr1_2:58325403-58325422 None:intergenic 15.0%
!! AGAAAATAAAATACTATATG+AGG - chr1_2:58325404-58325423 None:intergenic 15.0%
!! ACTATTAATTGATAGAAAAA+CGG - chr1_2:58325523-58325542 None:intergenic 15.0%
!! ATATATTATAATTACTCATG+AGG - chr1_2:58326217-58326236 None:intergenic 15.0%
!! AATAATAATTTCAATGCAAA+TGG + chr1_2:58326911-58326930 Msa0080080:CDS 15.0%
!! ATAATAATTTCAATGCAAAT+GGG + chr1_2:58326912-58326931 Msa0080080:CDS 15.0%
!!! TACTATTATTAACTATTTCT+TGG - chr1_2:58327345-58327364 None:intergenic 15.0%
!! ATCAAATCATTGATATTAAT+TGG + chr1_2:58327471-58327490 Msa0080080:three_prime_UTR 15.0%
!! TTAATTGAAACAGAAAAGAT+GGG - chr1_2:58323336-58323355 None:intergenic 20.0%
!! AGAATACAAAATAAATTACC+TGG - chr1_2:58323714-58323733 None:intergenic 20.0%
!!! TTTTTGTGAGATATCATTTT+TGG - chr1_2:58324112-58324131 None:intergenic 20.0%
!! AAAAATGATATCTCACAAAA+AGG + chr1_2:58324111-58324130 Msa0080080:intron 20.0%
!! CTTCACTTAAAAGAATAATT+AGG - chr1_2:58324264-58324283 None:intergenic 20.0%
!!! AATAACGTGTTTAATTTGTT+TGG + chr1_2:58324492-58324511 Msa0080080:intron 20.0%
!!! TGATTTTATCCAATAAAAGA+GGG - chr1_2:58325169-58325188 None:intergenic 20.0%
!!! TTGATTTTATCCAATAAAAG+AGG - chr1_2:58325170-58325189 None:intergenic 20.0%
!!! TTGATGATGTAATAGAAAAA+AGG - chr1_2:58325435-58325454 None:intergenic 20.0%
!! TCAATATATTACATCATTCT+CGG + chr1_2:58325451-58325470 Msa0080080:intron 20.0%
!! TGATATGTTTAATGCTATAT+TGG + chr1_2:58326970-58326989 Msa0080080:CDS 20.0%
!! AATAATGTTATGAACATTAG+TGG + chr1_2:58327094-58327113 Msa0080080:CDS 20.0%
!!! TATTCAACTTTTTGAATTAG+TGG + chr1_2:58327363-58327382 Msa0080080:three_prime_UTR 20.0%
!!! ATTCAACTTTTTGAATTAGT+GGG + chr1_2:58327364-58327383 Msa0080080:three_prime_UTR 20.0%
!! ACATTTGAATACACATTTAT+GGG - chr1_2:58327563-58327582 None:intergenic 20.0%
!! AACATTTGAATACACATTTA+TGG - chr1_2:58327564-58327583 None:intergenic 20.0%
!! TGTGTATTCAAATGTTATAA+TGG + chr1_2:58327568-58327587 Msa0080080:three_prime_UTR 20.0%
!!! ATTTTAATTTGTGCATTCAT+TGG - chr1_2:58327673-58327692 None:intergenic 20.0%
! CTTAATTGAAACAGAAAAGA+TGG - chr1_2:58323337-58323356 None:intergenic 25.0%
! AAGAAAAAAACAAGCTATCT+AGG - chr1_2:58323372-58323391 None:intergenic 25.0%
!! CTACTTCCTTTTTCTTAATT+TGG + chr1_2:58323476-58323495 Msa0080080:five_prime_UTR 25.0%
! ACATAGCCAAATTAAGAAAA+AGG - chr1_2:58323485-58323504 None:intergenic 25.0%
! TTGTTATAGAATATGATGCT+TGG - chr1_2:58323955-58323974 None:intergenic 25.0%
!! TTTAGAATTAACCAATGAGA+AGG - chr1_2:58324030-58324049 None:intergenic 25.0%
!! AGTCTTATCCTTTAATTTCA+TGG - chr1_2:58324217-58324236 None:intergenic 25.0%
! AAGACAAAGATCTATATAGT+GGG + chr1_2:58324281-58324300 Msa0080080:intron 25.0%
! GTGTGAAACAAAGAAAAAAT+AGG - chr1_2:58324453-58324472 None:intergenic 25.0%
! GAAATGTGAATAAAAACTTG+TGG + chr1_2:58324929-58324948 Msa0080080:intron 25.0%
!! CAAGTTGTATAATGCATTTT+TGG + chr1_2:58325487-58325506 Msa0080080:intron 25.0%
!! TGAATGAATGAATATCGTTT+TGG - chr1_2:58325672-58325691 None:intergenic 25.0%
! GTCGTTGTATGTTATTAATT+TGG + chr1_2:58325754-58325773 Msa0080080:intron 25.0%
! AGACATCTTAATATTTCTTC+AGG - chr1_2:58325902-58325921 None:intergenic 25.0%
! GTAACTTATAATTGTACTCA+TGG - chr1_2:58326085-58326104 None:intergenic 25.0%
! TTATATTATAATACCCATGC+AGG + chr1_2:58326190-58326209 Msa0080080:intron 25.0%
! ATTAATAAGAAACACTAGCT+AGG - chr1_2:58326296-58326315 None:intergenic 25.0%
! AGCTAGTGTTTCTTATTAAT+TGG + chr1_2:58326296-58326315 Msa0080080:intron 25.0%
! AATGCAAATGGGATAATAAA+TGG + chr1_2:58326923-58326942 Msa0080080:CDS 25.0%
!! TTCAACTTTTTGAATTAGTG+GGG + chr1_2:58327365-58327384 Msa0080080:three_prime_UTR 25.0%
AAAATACAAGAAACAGGCTT+TGG - chr1_2:58323232-58323251 None:intergenic 30.0%
GGCATAAAAATACAAGAAAC+AGG - chr1_2:58323238-58323257 None:intergenic 30.0%
CAACAAACTGATCAAATACT+TGG + chr1_2:58323573-58323592 Msa0080080:CDS 30.0%
TTTGTTGAAGTATGAGAATG+TGG - chr1_2:58323612-58323631 None:intergenic 30.0%
AATAAATTACCTGGATTTCC+TGG - chr1_2:58323705-58323724 None:intergenic 30.0%
TAGAATATGATGCTTGGAAT+TGG - chr1_2:58323949-58323968 None:intergenic 30.0%
!! TTTTGGAAACGAAGATCATT+TGG - chr1_2:58324095-58324114 None:intergenic 30.0%
TATAGGCTCCATGAAATTAA+AGG + chr1_2:58324206-58324225 Msa0080080:intron 30.0%
TTAAAGGATAAGACTTGATC+TGG + chr1_2:58324222-58324241 Msa0080080:intron 30.0%
GAAGACAAAGATCTATATAG+TGG + chr1_2:58324280-58324299 Msa0080080:intron 30.0%
AGACAAAGATCTATATAGTG+GGG + chr1_2:58324282-58324301 Msa0080080:intron 30.0%
CAACAGTGTACAACAATTAT+TGG - chr1_2:58324417-58324436 None:intergenic 30.0%
GTATGTGAAATATGCAACAA+GGG + chr1_2:58324579-58324598 Msa0080080:CDS 30.0%
TAGTGCAGAAATTAGAAAGA+GGG + chr1_2:58324674-58324693 Msa0080080:CDS 30.0%
AATATGCTGTTCAATCTGAT+TGG + chr1_2:58324829-58324848 Msa0080080:CDS 30.0%
AAAGCTCATTCCAAAATATG+TGG + chr1_2:58324852-58324871 Msa0080080:CDS 30.0%
ATTCCAAAATATGTGGTACA+AGG + chr1_2:58324859-58324878 Msa0080080:CDS 30.0%
TTCCAAAATATGTGGTACAA+GGG + chr1_2:58324860-58324879 Msa0080080:CDS 30.0%
AGCTAAGAATAAGATAGACT+GGG + chr1_2:58325064-58325083 Msa0080080:intron 30.0%
TCAAGTGTTCATACTTCATA+GGG - chr1_2:58325103-58325122 None:intergenic 30.0%
TCATTGGGTTAAATCAATGT+GGG - chr1_2:58325239-58325258 None:intergenic 30.0%
TTCATTGGGTTAAATCAATG+TGG - chr1_2:58325240-58325259 None:intergenic 30.0%
!! TGAAATGAAAAGTGTTCATG+AGG - chr1_2:58325310-58325329 None:intergenic 30.0%
AAACATCGCTAAAAACGTAA+AGG + chr1_2:58325715-58325734 Msa0080080:intron 30.0%
CAATTTGAGGGTTAATAATG+GGG - chr1_2:58326472-58326491 None:intergenic 30.0%
CCAATTTGAGGGTTAATAAT+GGG - chr1_2:58326473-58326492 None:intergenic 30.0%
ACCAATTTGAGGGTTAATAA+TGG - chr1_2:58326474-58326493 None:intergenic 30.0%
ATTATTAACCCTCAAATTGG+TGG + chr1_2:58326473-58326492 Msa0080080:CDS 30.0%
! GTGAATATGTTGTTGTTGAA+GGG - chr1_2:58326584-58326603 None:intergenic 30.0%
! AGTGAATATGTTGTTGTTGA+AGG - chr1_2:58326585-58326604 None:intergenic 30.0%
TAATTCACTCAACAACATCT+TGG + chr1_2:58326655-58326674 Msa0080080:CDS 30.0%
AACAACATCTTGGAAGAAAA+TGG + chr1_2:58326665-58326684 Msa0080080:CDS 30.0%
ACTGTGAGTAATAATAATGC+AGG + chr1_2:58326767-58326786 Msa0080080:CDS 30.0%
TAATAATGCAGGTATCATGA+CGG + chr1_2:58326778-58326797 Msa0080080:CDS 30.0%
TGCTATATTGGATCAAAGTA+AGG + chr1_2:58326982-58327001 Msa0080080:CDS 30.0%
! CAAAGCATTAATAGTGTTGT+TGG + chr1_2:58327040-58327059 Msa0080080:CDS 30.0%
TATGAACATTAGTGGAAGTA+AGG + chr1_2:58327102-58327121 Msa0080080:CDS 30.0%
ATGAACATTAGTGGAAGTAA+GGG + chr1_2:58327103-58327122 Msa0080080:CDS 30.0%
CACATAGTAATTTCTATGGA+GGG + chr1_2:58327176-58327195 Msa0080080:CDS 30.0%
ACATAGTAATTTCTATGGAG+GGG + chr1_2:58327177-58327196 Msa0080080:CDS 30.0%
TTTGAAAACACCACTTAGTT+TGG + chr1_2:58327311-58327330 Msa0080080:exon 30.0%
ATCAATGATTTGATGTGTCA+TGG - chr1_2:58327465-58327484 None:intergenic 30.0%
TTATGTGTAGACTCTTATGA+TGG + chr1_2:58327536-58327555 Msa0080080:three_prime_UTR 30.0%
AACAGAAAAGATGGGATTTG+TGG - chr1_2:58323328-58323347 None:intergenic 35.0%
ACTCTTGTCTTGAGAAACTA+TGG - chr1_2:58323396-58323415 None:intergenic 35.0%
AACATCACAAGTTGTGATAG+TGG + chr1_2:58323507-58323526 Msa0080080:CDS 35.0%
ACATCACAAGTTGTGATAGT+GGG + chr1_2:58323508-58323527 Msa0080080:CDS 35.0%
AACCACCTCTTAAGAAGAAA+AGG + chr1_2:58323673-58323692 Msa0080080:CDS 35.0%
! TTCCTTTTCTTCTTAAGAGG+TGG - chr1_2:58323678-58323697 None:intergenic 35.0%
! AGGTTCCTTTTCTTCTTAAG+AGG - chr1_2:58323681-58323700 None:intergenic 35.0%
ACTTCTTTCAACCTTCTCAT+TGG + chr1_2:58324016-58324035 Msa0080080:intron 35.0%
ACTATCACCAACAACACTAA+TGG + chr1_2:58324542-58324561 Msa0080080:CDS 35.0%
TTTGTAGCCATTAGTGTTGT+TGG - chr1_2:58324552-58324571 None:intergenic 35.0%
CGTATGTGAAATATGCAACA+AGG + chr1_2:58324578-58324597 Msa0080080:CDS 35.0%
!!! GTTCTTTGTTTTAGCTTCCA+AGG - chr1_2:58324654-58324673 None:intergenic 35.0%
CTAGTGCAGAAATTAGAAAG+AGG + chr1_2:58324673-58324692 Msa0080080:CDS 35.0%
! AAGCACTTTTGTAGAAAGCA+TGG + chr1_2:58324771-58324790 Msa0080080:CDS 35.0%
! TTCCCTTGTACCACATATTT+TGG - chr1_2:58324865-58324884 None:intergenic 35.0%
ACATACATACCTGGAAAAGA+TGG - chr1_2:58324907-58324926 None:intergenic 35.0%
ACATTTCACACATACATACC+TGG - chr1_2:58324916-58324935 None:intergenic 35.0%
CTTATTCTTAGCTGCCAAAA+CGG - chr1_2:58325057-58325076 None:intergenic 35.0%
CAGCTAAGAATAAGATAGAC+TGG + chr1_2:58325063-58325082 Msa0080080:intron 35.0%
CTCAAGTGTTCATACTTCAT+AGG - chr1_2:58325104-58325123 None:intergenic 35.0%
! TCTAACACTCCCTCTTTTAT+TGG + chr1_2:58325157-58325176 Msa0080080:intron 35.0%
CTAACACTCACTCTTTCATT+GGG - chr1_2:58325254-58325273 None:intergenic 35.0%
TCTAACACTCACTCTTTCAT+TGG - chr1_2:58325255-58325274 None:intergenic 35.0%
TCAAAGATTCCTACGTATGT+AGG + chr1_2:58326141-58326160 Msa0080080:intron 35.0%
CAAAGATTCCTACGTATGTA+GGG + chr1_2:58326142-58326161 Msa0080080:intron 35.0%
TTTATACACCCTACATACGT+AGG - chr1_2:58326153-58326172 None:intergenic 35.0%
! AAACGAGATTTGAGATTGGT+TGG - chr1_2:58326433-58326452 None:intergenic 35.0%
AATGGGGTTTAAAGGTAATG+AGG - chr1_2:58326456-58326475 None:intergenic 35.0%
! GGGTTAATAATGGGGTTTAA+AGG - chr1_2:58326464-58326483 None:intergenic 35.0%
CCCATTATTAACCCTCAAAT+TGG + chr1_2:58326470-58326489 Msa0080080:CDS 35.0%
ATACAGTTCCACCAATTTGA+GGG - chr1_2:58326484-58326503 None:intergenic 35.0%
AGTTCATGAGGTGATGATAA+TGG - chr1_2:58326539-58326558 None:intergenic 35.0%
!! ATGTTGTTGTTGAAGGGTTT+TGG - chr1_2:58326578-58326597 None:intergenic 35.0%
!! GAGATGAAGTTGATGATGAA+AGG - chr1_2:58326613-58326632 None:intergenic 35.0%
! TTTGAACTGAGTTGAAGAGA+AGG - chr1_2:58326635-58326654 None:intergenic 35.0%
GCAAATGGGATAATAAATGG+AGG + chr1_2:58326926-58326945 Msa0080080:CDS 35.0%
AATGGGATAATAAATGGAGG+AGG + chr1_2:58326929-58326948 Msa0080080:CDS 35.0%
! AGCATTAATAGTGTTGTTGG+AGG + chr1_2:58327043-58327062 Msa0080080:CDS 35.0%
! ATTAATAGTGTTGTTGGAGG+TGG + chr1_2:58327046-58327065 Msa0080080:CDS 35.0%
TGTAATGACACTGGATTTGT+TGG + chr1_2:58327135-58327154 Msa0080080:CDS 35.0%
! GTAATGACACTGGATTTGTT+GGG + chr1_2:58327136-58327155 Msa0080080:CDS 35.0%
!! TAATGACACTGGATTTGTTG+GGG + chr1_2:58327137-58327156 Msa0080080:CDS 35.0%
GGTGCACATAGTAATTTCTA+TGG + chr1_2:58327172-58327191 Msa0080080:CDS 35.0%
GCACATAGTAATTTCTATGG+AGG + chr1_2:58327175-58327194 Msa0080080:CDS 35.0%
CATAGTAATTTCTATGGAGG+GGG + chr1_2:58327178-58327197 Msa0080080:CDS 35.0%
AGAAATTGGTCAACCAAGAA+TGG + chr1_2:58327256-58327275 Msa0080080:CDS 35.0%
AGATTCAAATCCTCCATTCT+TGG - chr1_2:58327272-58327291 None:intergenic 35.0%
! AAAACACCACTTAGTTTGGT+TGG + chr1_2:58327315-58327334 Msa0080080:exon 35.0%
! AAACACCACTTAGTTTGGTT+GGG + chr1_2:58327316-58327335 Msa0080080:three_prime_UTR 35.0%
TCTACACATAACACTTACAC+TGG - chr1_2:58327527-58327546 None:intergenic 35.0%
AACGTGAATATTGAACAGGA+GGG - chr1_2:58327616-58327635 None:intergenic 35.0%
TCCTGTTCAATATTCACGTT+CGG + chr1_2:58327616-58327635 Msa0080080:three_prime_UTR 35.0%
AGAGCCACAAAAACTAGATA+AGG + chr1_2:58327733-58327752 Msa0080080:three_prime_UTR 35.0%
! TTTTATGGTGTGGAGATGAG+GGG - chr1_2:58323269-58323288 None:intergenic 40.0%
! CTTTTATGGTGTGGAGATGA+GGG - chr1_2:58323270-58323289 None:intergenic 40.0%
! AGGAAACTCTCCTCCTTTTA+TGG - chr1_2:58323284-58323303 None:intergenic 40.0%
ATAAAAGGAGGAGAGTTTCC+TGG + chr1_2:58323283-58323302 Msa0080080:five_prime_UTR 40.0%
AAGAAGAAAAGGAACCTACC+AGG + chr1_2:58323684-58323703 Msa0080080:CDS 40.0%
AATTACCTGGATTTCCTGGT+AGG - chr1_2:58323701-58323720 None:intergenic 40.0%
CTCACAAAAAGGCCAATATG+AGG + chr1_2:58324122-58324141 Msa0080080:intron 40.0%
GTGTGTGTAAGTAAGTAGCT+AGG + chr1_2:58324364-58324383 Msa0080080:intron 40.0%
!! TTCGGTGCAGTTGAAGATTT+TGG - chr1_2:58324617-58324636 None:intergenic 40.0%
! GAAAGCATGGTGAGAAAAAG+TGG + chr1_2:58324784-58324803 Msa0080080:CDS 40.0%
AGGGAATACAAATGTGACTG+TGG + chr1_2:58324879-58324898 Msa0080080:CDS 40.0%
TTCATACTTCATAGGGTGTG+TGG - chr1_2:58325096-58325115 None:intergenic 40.0%
TATGTCCCACCACTTTATGT+GGG + chr1_2:58325192-58325211 Msa0080080:intron 40.0%
GAAATGGAACCCACATAAAG+TGG - chr1_2:58325204-58325223 None:intergenic 40.0%
! TGGGTCATACACTTTGGAAA+TGG - chr1_2:58325220-58325239 None:intergenic 40.0%
TCAATGTGGGTCATACACTT+TGG - chr1_2:58325226-58325245 None:intergenic 40.0%
GAGAACAACAAAGCAAACGA+AGG + chr1_2:58326386-58326405 Msa0080080:CDS 40.0%
! GAGGAAACGAGATTTGAGAT+TGG - chr1_2:58326437-58326456 None:intergenic 40.0%
GATACAGTTCCACCAATTTG+AGG - chr1_2:58326485-58326504 None:intergenic 40.0%
ATGGAAGCTTGTGATCTGAA+TGG - chr1_2:58326520-58326539 None:intergenic 40.0%
ACTACTGACATGAGTTCATG+AGG - chr1_2:58326551-58326570 None:intergenic 40.0%
!! TTGTTGTTGAAGGGTTTTGG+TGG - chr1_2:58326575-58326594 None:intergenic 40.0%
GTGAAGTTGCAGCAGATAAA+TGG - chr1_2:58326697-58326716 None:intergenic 40.0%
CTACAGAAAGCTGCTCAAAT+GGG + chr1_2:58326740-58326759 Msa0080080:CDS 40.0%
TACCGTTGCTACAAACATGA+TGG + chr1_2:58326808-58326827 Msa0080080:CDS 40.0%
! TTTGGTGTAGTGCAACAACA+AGG + chr1_2:58326842-58326861 Msa0080080:CDS 40.0%
! ATAATAAATGGAGGAGGCGT+TGG + chr1_2:58326935-58326954 Msa0080080:CDS 40.0%
AACATTAGTGGAAGTAAGGG+TGG + chr1_2:58327106-58327125 Msa0080080:CDS 40.0%
CTGATGAGGTTTGGAGAAAT+TGG + chr1_2:58327242-58327261 Msa0080080:CDS 40.0%
AATTGGTCAACCAAGAATGG+AGG + chr1_2:58327259-58327278 Msa0080080:CDS 40.0%
! AACACCACTTAGTTTGGTTG+GGG + chr1_2:58327317-58327336 Msa0080080:three_prime_UTR 40.0%
TTTGATGTGTCATGGTCGAA+AGG - chr1_2:58327457-58327476 None:intergenic 40.0%
GAACGTGAATATTGAACAGG+AGG - chr1_2:58327617-58327636 None:intergenic 40.0%
TCCGAACGTGAATATTGAAC+AGG - chr1_2:58327620-58327639 None:intergenic 40.0%
TTGTGGCTCTCATTTCCTTT+GGG - chr1_2:58327723-58327742 Msa0080090:three_prime_UTR 40.0%
TTTGTGGCTCTCATTTCCTT+TGG - chr1_2:58327724-58327743 Msa0080090:three_prime_UTR 40.0%
! CCTTTTATGGTGTGGAGATG+AGG - chr1_2:58323271-58323290 None:intergenic 45.0%
CCTCATCTCCACACCATAAA+AGG + chr1_2:58323268-58323287 Msa0080080:five_prime_UTR 45.0%
CATCTCCACACCATAAAAGG+AGG + chr1_2:58323271-58323290 Msa0080080:five_prime_UTR 45.0%
! ACTCTCCTCCTTTTATGGTG+TGG - chr1_2:58323279-58323298 None:intergenic 45.0%
!! TCCTGGTTTTTGTCTTCCTC+TGG + chr1_2:58323300-58323319 Msa0080080:five_prime_UTR 45.0%
ACCAGAGGAAGACAAAAACC+AGG - chr1_2:58323304-58323323 None:intergenic 45.0%
ACAAGCTATCTAGGAAGCAG+AGG - chr1_2:58323363-58323382 None:intergenic 45.0%
AGTGCTATCACTTCAGCACT+TGG - chr1_2:58324525-58324544 None:intergenic 45.0%
AATCTTCAACTGCACCGAAG+AGG + chr1_2:58324618-58324637 Msa0080080:CDS 45.0%
AAGGCAAGTTGTGTCCTCTT+CGG - chr1_2:58324635-58324654 None:intergenic 45.0%
TGGTGAACACATGAAGGTTC+AGG - chr1_2:58324711-58324730 None:intergenic 45.0%
GGGTTATGGTGAACACATGA+AGG - chr1_2:58324717-58324736 None:intergenic 45.0%
! AGAGCACTTGGTGATCTTAC+TGG + chr1_2:58324741-58324760 Msa0080080:CDS 45.0%
! ACTGTGGAACCATCTTTTCC+AGG + chr1_2:58324895-58324914 Msa0080080:CDS 45.0%
GTATGTCCCACCACTTTATG+TGG + chr1_2:58325191-58325210 Msa0080080:intron 45.0%
TGGAACCCACATAAAGTGGT+GGG - chr1_2:58325200-58325219 None:intergenic 45.0%
ATGGAACCCACATAAAGTGG+TGG - chr1_2:58325201-58325220 None:intergenic 45.0%
! GTGCTAGCAACACTCTCTTT+TGG - chr1_2:58325286-58325305 None:intergenic 45.0%
TTACTCATGAGGACCTGCAT+GGG - chr1_2:58326206-58326225 None:intergenic 45.0%
ATTACTCATGAGGACCTGCA+TGG - chr1_2:58326207-58326226 None:intergenic 45.0%
AGCTTTCTGTAGCAATGCAG+TGG - chr1_2:58326732-58326751 None:intergenic 45.0%
GCTACAGAAAGCTGCTCAAA+TGG + chr1_2:58326739-58326758 Msa0080080:CDS 45.0%
CGCCATCATGTTTGTAGCAA+CGG - chr1_2:58326813-58326832 None:intergenic 45.0%
TGTTGCACTACACCAAACTG+CGG - chr1_2:58326839-58326858 None:intergenic 45.0%
! GTTGTTGCTGTTGCATGTAG+TGG - chr1_2:58326883-58326902 None:intergenic 45.0%
! AATAGTGTTGTTGGAGGTGG+AGG + chr1_2:58327049-58327068 Msa0080080:CDS 45.0%
ATTAGTGGAAGTAAGGGTGG+TGG + chr1_2:58327109-58327128 Msa0080080:CDS 45.0%
TGGTGGAGATGTAATGACAC+TGG + chr1_2:58327126-58327145 Msa0080080:CDS 45.0%
!! ACACTGGATTTGTTGGGGAT+AGG + chr1_2:58327142-58327161 Msa0080080:CDS 45.0%
TGTGTCATGGTCGAAAGGAA+GGG - chr1_2:58327452-58327471 None:intergenic 45.0%
ATGTGTCATGGTCGAAAGGA+AGG - chr1_2:58327453-58327472 None:intergenic 45.0%
! CTCTTGACTTGAGAACCCAA+AGG + chr1_2:58327705-58327724 Msa0080080:three_prime_UTR 45.0%
!!! TCAATTTTTTATTTTTTTTA+AGG - chr1_2:58325867-58325886 None:intergenic 5.0%
GATGGGATTTGTGGAACCAG+AGG - chr1_2:58323319-58323338 None:intergenic 50.0%
AGGAACCTACCAGGAAATCC+AGG + chr1_2:58323693-58323712 Msa0080080:CDS 50.0%
GAAGAGGACACAACTTGCCT+TGG + chr1_2:58324634-58324653 Msa0080080:CDS 50.0%
CAAGTGCTCTTGCAGGGTTA+TGG - chr1_2:58324731-58324750 None:intergenic 50.0%
!! CATAACCCTGCAAGAGCACT+TGG + chr1_2:58324729-58324748 Msa0080080:CDS 50.0%
GATCACCAAGTGCTCTTGCA+GGG - chr1_2:58324737-58324756 None:intergenic 50.0%
AGATCACCAAGTGCTCTTGC+AGG - chr1_2:58324738-58324757 None:intergenic 50.0%
!!! AAAGTGTGTGCGTGCCGTTT+TGG + chr1_2:58325040-58325059 Msa0080080:intron 50.0%
AATGCAGTGGCTGACATGTG+AGG - chr1_2:58326719-58326738 None:intergenic 50.0%
!! CTGGATTTGTTGGGGATAGG+AGG + chr1_2:58327145-58327164 Msa0080080:CDS 50.0%
!! GATTTGTTGGGGATAGGAGG+AGG + chr1_2:58327148-58327167 Msa0080080:CDS 50.0%
! AGGGGGTACACAACAACAAC+AGG + chr1_2:58327195-58327214 Msa0080080:CDS 50.0%
TGTCATGGTCGAAAGGAAGG+GGG - chr1_2:58327450-58327469 None:intergenic 50.0%
GTGTCATGGTCGAAAGGAAG+GGG - chr1_2:58327451-58327470 None:intergenic 50.0%
!! TGGAGATGAGGGGTGCTTGT+TGG - chr1_2:58323259-58323278 None:intergenic 55.0%
TGCACTACACCAAACTGCGG+CGG - chr1_2:58326836-58326855 None:intergenic 55.0%
!! GGAGGAGGCGTTGGAATGAA+TGG + chr1_2:58326944-58326963 Msa0080080:CDS 55.0%
! AGTGTTGTTGGAGGTGGAGG+AGG + chr1_2:58327052-58327071 Msa0080080:CDS 55.0%
TTGTTGGGGATAGGAGGAGG+AGG + chr1_2:58327151-58327170 Msa0080080:CDS 55.0%
CAGCAGCAGCTGATGAGGTT+TGG + chr1_2:58327233-58327252 Msa0080080:CDS 55.0%
GGCTCCCCAACCAAACTAAG+TGG - chr1_2:58327324-58327343 None:intergenic 55.0%
GTCATGGTCGAAAGGAAGGG+GGG - chr1_2:58327449-58327468 None:intergenic 55.0%
GTTGTTGGAGGTGGAGGAGG+AGG + chr1_2:58327055-58327074 Msa0080080:CDS 60.0%
AGCAGCAGCAGCAGCTGATG+AGG + chr1_2:58327228-58327247 Msa0080080:CDS 60.0%
! TCGAAAGGAAGGGGGGTGTG+GGG - chr1_2:58327442-58327461 None:intergenic 60.0%
! GTCGAAAGGAAGGGGGGTGT+GGG - chr1_2:58327443-58327462 None:intergenic 60.0%
! ATGATGGCGCCGCCGCAGTT+TGG + chr1_2:58326824-58326843 Msa0080080:CDS 65.0%
GGTCGAAAGGAAGGGGGGTG+TGG - chr1_2:58327444-58327463 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 58323211 58327756 58323211 ID=Msa0080080;Name=Msa0080080
chr1_2 mRNA 58323211 58327756 58323211 ID=Msa0080080-mRNA-1;Parent=Msa0080080;Name=Msa0080080-mRNA-1;_AED=0.26;_eAED=0.26;_QI=290|1|1|1|1|1|3|441|529
chr1_2 exon 58323211 58323714 58323211 ID=Msa0080080-mRNA-1:exon:18638;Parent=Msa0080080-mRNA-1
chr1_2 exon 58324520 58324916 58324520 ID=Msa0080080-mRNA-1:exon:18639;Parent=Msa0080080-mRNA-1
chr1_2 exon 58326337 58327756 58326337 ID=Msa0080080-mRNA-1:exon:18640;Parent=Msa0080080-mRNA-1
chr1_2 five_prime_UTR 58323211 58323500 58323211 ID=Msa0080080-mRNA-1:five_prime_utr;Parent=Msa0080080-mRNA-1
chr1_2 CDS 58323501 58323714 58323501 ID=Msa0080080-mRNA-1:cds;Parent=Msa0080080-mRNA-1
chr1_2 CDS 58324520 58324916 58324520 ID=Msa0080080-mRNA-1:cds;Parent=Msa0080080-mRNA-1
chr1_2 CDS 58326337 58327315 58326337 ID=Msa0080080-mRNA-1:cds;Parent=Msa0080080-mRNA-1
chr1_2 three_prime_UTR 58327316 58327756 58327316 ID=Msa0080080-mRNA-1:three_prime_utr;Parent=Msa0080080-mRNA-1
Gene Sequence

>Msa0080080

ATGTCAAACATCACAAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACAAGAGAAGATGCAGTTAAACAGCAACAAACTGATCAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAAATAATAATAATAATAATAGCAATGGTTCTAACACAGATTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGCAACAAGGGTTTTCAAAGAGACCAAAATCTTCAACTGCACCGAAGAGGACACAACTTGCCTTGGAAGCTAAAACAAAGAACTAGTGCAGAAATTAGAAAGAGGGTTTATGTTTGTCCTGAACCTTCATGTGTTCACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGTATCAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACTCACAGAGCATTCTGTGACGCATTAGCTGAAGAGAACAACAAAGCAAACGAAGGAGTACTATCAAATTTGCAACACCAACCAATCTCAAATCTCGTTTCCTCATTACCTTTAAACCCCATTATTAACCCTCAAATTGGTGGAACTGTATCAGAATTCAACAACCATTCAGATCACAAGCTTCCATTATCATCACCTCATGAACTCATGTCAGTAGTGCCACCAAAACCCTTCAACAACAACATATTCACTAGAAGCCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAACATCTTGGAAGAAAATGGATCACTCCATTTATCTGCTGCAACTTCACCTCACATGTCAGCCACTGCATTGCTACAGAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCAGGTATCATGACGGATAAAACTACCGTTGCTACAAACATGATGGCGCCGCCGCAGTTTGGTGTAGTGCAACAACAAGGACATGCTTTCATGAACCACTACATGCAACAGCAACAACAACACTACAATAATAATTTCAATGCAAATGGGATAATAAATGGAGGAGGCGTTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCGAAGATCATTGAACAAAACAATCAAACTCAAAGCATTAATAGTGTTGTTGGAGGTGGAGGAGGAGGTGCATCAAGTAATAGTAATAATGTTATGAACATTAGTGGAAGTAAGGGTGGTGGAGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGAGGTGCACATAGTAATTTCTATGGAGGGGGTACACAACAACAACAGGCAGAAAGTGCAGCAGCAGCAGCAGCTGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGGAGGATTTGAATCTTTTTCAGCAACAAGCAACATTTGA
Protein sequence

>Msa0080080

MSNITSCDSGSFSTENTREDAVKQQQTDQILGQFHSPHSHTSTNNNNNNSNGSNTDLQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVLSNLQHQPISNLVSSLPLNPIINPQIGGTVSEFNNHSDHKLPLSSPHELMSVVPPKPFNNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGIMTDKTTVATNMMAPPQFGVVQQQGHAFMNHYMQQQQQHYNNNFNANGIINGGGVGMNGVDMFNAILDQSKALSKIIEQNNQTQSINSVVGGGGGGASSNSNNVMNISGSKGGGDVMTLDLLGIGGGGAHSNFYGGGTQQQQAESAAAAAADEVWRNWSTKNGGFESFSATSNI*