AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945540 MtrunA17_Chr1g0191991 98.305 531 6 3 1 529 1 530 0.0 1067
Msa0945540 MtrunA17_Chr7g0268961 53.721 430 163 12 72 481 32 445 4.70e-134 398
Msa0945540 MtrunA17_Chr2g0330171 59.317 322 73 6 50 348 34 320 1.28e-122 368
Msa0945540 MtrunA17_Chr8g0342421 62.791 301 93 6 60 349 60 352 2.36e-119 361
Msa0945540 MtrunA17_Chr1g0185121 55.807 353 101 10 62 388 40 363 8.65e-118 355
Msa0945540 MtrunA17_Chr8g0373541 83.422 187 26 1 39 225 15 196 5.82e-116 352
Msa0945540 MtrunA17_Chr7g0263941 55.821 335 117 5 30 358 3 312 2.86e-113 342
Msa0945540 MtrunA17_Chr4g0040571 51.482 371 102 10 59 351 36 406 7.84e-113 343
Msa0945540 MtrunA17_Chr4g0029521 45.217 460 176 16 60 480 36 458 9.37e-110 335
Msa0945540 MtrunA17_Chr1g0162971 51.190 336 103 6 62 347 41 365 1.51e-106 326
Msa0945540 MtrunA17_Chr1g0181381 80.925 173 32 1 62 233 38 210 3.62e-106 327
Msa0945540 MtrunA17_Chr1g0151351 80.702 171 32 1 53 222 32 202 2.31e-105 323
Msa0945540 MtrunA17_Chr1g0199101 83.333 162 27 0 60 221 45 206 3.66e-105 325
Msa0945540 MtrunA17_Chr1g0163001 76.087 184 42 1 43 224 22 205 7.97e-105 324
Msa0945540 MtrunA17_Chr1g0210821 84.076 157 25 0 65 221 47 203 4.88e-103 321
Msa0945540 MtrunA17_Chr2g0326381 68.116 207 60 4 61 261 31 237 5.40e-101 310
Msa0945540 MtrunA17_Chr3g0141431 56.090 312 108 9 59 351 19 320 3.46e-99 305
Msa0945540 MtrunA17_Chr2g0324991 90.076 131 13 0 73 203 3 133 6.06e-88 267
Msa0945540 MtrunA17_Chr6g0479921 46.043 278 125 6 62 336 29 284 3.91e-74 243
Msa0945540 MtrunA17_Chr8g0375521 64.744 156 53 2 62 215 27 182 5.13e-72 235
Msa0945540 MtrunA17_Chr1g0200421 33.929 168 95 4 74 225 234 401 9.50e-24 104
Msa0945540 MtrunA17_Chr2g0320341 34.194 155 88 3 71 211 224 378 2.34e-23 102
Msa0945540 MtrunA17_Chr3g0123941 33.696 184 98 4 72 231 118 301 4.50e-23 100
Msa0945540 MtrunA17_Chr8g0352011 35.106 188 96 8 58 227 152 331 2.96e-21 95.1
Msa0945540 MtrunA17_Chr8g0382121 35.811 148 84 5 75 211 109 256 6.41e-21 93.6
Msa0945540 MtrunA17_Chr7g0258011 35.404 161 84 7 85 227 183 341 9.70e-21 93.6
Msa0945540 MtrunA17_Chr5g0422571 35.542 166 88 7 73 227 102 259 5.20e-20 90.5
Msa0945540 MtrunA17_Chr1g0173841 34.104 173 88 8 73 227 216 380 4.66e-19 89.4
Msa0945540 MtrunA17_Chr1g0198651 33.520 179 90 8 73 230 103 273 5.01e-19 87.8
Msa0945540 MtrunA17_Chr2g0328921 35.542 166 87 8 59 214 127 282 2.42e-18 86.3
Msa0945540 MtrunA17_Chr4g0053341 33.113 151 91 4 73 214 69 218 7.12e-18 83.2
Msa0945540 MtrunA17_Chr4g0026521 36.429 140 77 6 85 214 125 262 7.90e-18 84.3
Msa0945540 MtrunA17_Chr2g0321291 36.054 147 82 6 78 214 133 277 1.13e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945540 AT3G50700.1 57.729 317 100 5 62 350 34 344 7.62e-117 353
Msa0945540 AT5G44160.1 57.009 321 105 7 57 346 31 349 5.52e-115 348
Msa0945540 AT1G03840.1 88.304 171 19 1 57 226 35 205 5.36e-113 345
Msa0945540 AT1G03840.2 87.135 171 19 2 57 226 35 203 1.87e-109 335
Msa0945540 AT5G44160.2 55.738 305 103 6 72 346 8 310 8.78e-106 323
Msa0945540 AT1G14580.1 79.412 170 35 0 55 224 46 215 1.20e-105 324
Msa0945540 AT1G14580.2 79.412 170 35 0 55 224 46 215 1.20e-105 324
Msa0945540 AT1G55110.3 82.840 169 28 1 58 225 59 227 1.68e-105 323
Msa0945540 AT1G55110.1 82.840 169 28 1 58 225 59 227 1.68e-105 323
Msa0945540 AT1G55110.2 82.840 169 28 1 58 225 59 227 1.68e-105 323
Msa0945540 AT1G14580.3 79.412 170 35 0 55 224 60 229 2.44e-105 324
Msa0945540 AT3G13810.6 85.294 170 22 2 62 230 51 218 9.66e-105 323
Msa0945540 AT3G13810.5 85.294 170 22 2 62 230 65 232 1.25e-104 323
Msa0945540 AT4G02670.1 77.473 182 39 2 53 233 45 225 1.49e-104 319
Msa0945540 AT3G13810.4 85.294 170 22 2 62 230 70 237 1.53e-104 323
Msa0945540 AT3G13810.1 85.294 170 22 2 62 230 70 237 1.53e-104 323
Msa0945540 AT4G02670.2 77.473 182 39 2 53 233 47 227 1.60e-104 319
Msa0945540 AT3G45260.2 83.537 164 26 1 62 224 39 202 2.38e-104 320
Msa0945540 AT3G45260.1 83.537 164 26 1 62 224 39 202 2.38e-104 320
Msa0945540 AT2G02080.1 79.755 163 33 0 59 221 51 213 6.25e-104 322
Msa0945540 AT2G02080.4 79.755 163 33 0 59 221 51 213 6.25e-104 322
Msa0945540 AT2G02080.5 79.755 163 33 0 59 221 51 213 6.25e-104 322
Msa0945540 AT2G02080.3 79.755 163 33 0 59 221 51 213 6.25e-104 322
Msa0945540 AT5G03150.1 84.472 161 24 1 62 221 53 213 2.60e-101 314
Msa0945540 AT5G60470.3 81.098 164 30 1 62 224 40 203 2.99e-101 313
Msa0945540 AT5G60470.2 81.098 164 30 1 62 224 44 207 3.34e-101 313
Msa0945540 AT2G02070.2 80.368 163 32 0 62 224 52 214 6.21e-101 317
Msa0945540 AT2G02070.1 80.368 163 32 0 62 224 52 214 6.21e-101 317
Msa0945540 AT3G13810.3 85.535 159 20 2 73 230 68 224 7.81e-97 303
Msa0945540 AT3G13810.2 85.535 159 20 2 73 230 82 238 9.07e-97 303
Msa0945540 AT5G60470.1 74.566 173 39 2 57 224 26 198 6.87e-95 296
Msa0945540 AT2G02080.6 38.938 452 168 12 86 481 1 400 6.82e-90 283
Msa0945540 AT2G02080.2 38.938 452 168 12 86 481 1 400 6.82e-90 283
Msa0945540 AT1G68130.1 66.026 156 51 2 62 215 41 196 1.51e-73 239
Msa0945540 AT2G01940.1 61.538 169 63 2 51 217 33 201 4.33e-72 237
Msa0945540 AT1G25250.3 63.694 157 54 2 62 215 33 189 1.69e-71 233
Msa0945540 AT2G01940.3 60.588 170 64 3 51 217 33 202 3.43e-68 226
Msa0945540 AT1G25250.1 64.626 147 49 2 72 215 20 166 1.01e-67 223
Msa0945540 AT1G68130.2 65.455 110 36 2 108 215 1 110 1.04e-46 166
Msa0945540 AT2G01940.2 63.393 112 39 2 108 217 1 112 2.06e-45 163
Msa0945540 AT1G25250.2 62.162 111 39 2 108 215 1 111 1.56e-44 159
Msa0945540 AT5G22890.1 31.667 180 106 5 47 211 174 351 3.14e-23 102
Msa0945540 AT1G34370.3 33.951 162 85 4 71 214 14 171 5.22e-23 99.8
Msa0945540 AT1G34370.2 33.544 158 91 3 71 214 224 381 7.46e-23 102
Msa0945540 AT1G34370.1 33.544 158 91 3 71 214 224 381 7.46e-23 102
Msa0945540 AT1G13290.1 34.591 159 84 7 73 219 89 239 1.03e-18 87.4
Msa0945540 AT3G20880.1 33.125 160 91 5 85 229 250 408 1.80e-18 88.2
Msa0945540 AT3G57670.1 32.370 173 91 7 73 227 205 369 1.88e-18 87.8
Msa0945540 AT1G51220.1 33.113 151 85 5 73 214 166 309 4.72e-18 85.9
Msa0945540 AT1G08290.1 35.294 153 80 7 73 214 168 312 5.69e-17 82.8
Msa0945540 AT1G34790.1 32.667 150 89 5 75 214 129 276 7.35e-16 79.0

Find 147 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCTTGTACCACATATTT+TGG 0.125409 6_3:-24370549 None:intergenic
AACATTTGAATACACATTTA+TGG 0.140693 6_3:-24373075 None:intergenic
TTCGGTGCAGTTGAAGATTT+TGG 0.237456 6_3:-24370301 None:intergenic
ACATAGCCAAATTAAGAAAA+AGG 0.238010 6_3:-24369167 None:intergenic
TGATATGTTTAATGCTATAT+TGG 0.247245 6_3:+24372484 Msa0945540:CDS
ATCAAATCATTGATATTAAT+TGG 0.250521 6_3:+24372985 Msa0945540:three_prime_UTR
TACTATTATTAACTATTTCT+TGG 0.251790 6_3:-24372856 None:intergenic
CCCATTATTAACCCTCAAAT+TGG 0.254900 6_3:+24371984 Msa0945540:CDS
AACAACATCTTGGAAGAAAA+TGG 0.256543 6_3:+24372179 Msa0945540:CDS
AATGCAAATGGGATAATAAA+TGG 0.269963 6_3:+24372437 Msa0945540:CDS
CCTCATCTCCACACCATAAA+AGG 0.270952 6_3:+24368953 Msa0945540:five_prime_UTR
ACCAATTTGAGGGTTAATAA+TGG 0.277668 6_3:-24371985 None:intergenic
ACATTTGAATACACATTTAT+GGG 0.280310 6_3:-24373074 None:intergenic
AGATTCAAATCCTCCATTCT+TGG 0.287816 6_3:-24372783 None:intergenic
ATGTTGTTGTTGAAGGGTTT+TGG 0.296073 6_3:-24372089 None:intergenic
CCAATTTGAGGGTTAATAAT+GGG 0.297467 6_3:-24371984 None:intergenic
GGGTTAATAATGGGGTTTAA+AGG 0.300726 6_3:-24371975 None:intergenic
TTTGTGGCTCTCATTTCCTT+TGG 0.301928 6_3:-24373229 Msa0945550:three_prime_UTR
TTTGAAAACACCACTTAGTT+TGG 0.303887 6_3:+24372825 Msa0945540:exon
GTGAAGTTGCAGCAGATAAA+TGG 0.308637 6_3:-24372208 None:intergenic
TTGTGGCTCTCATTTCCTTT+GGG 0.313829 6_3:-24373228 Msa0945550:three_prime_UTR
AATAAATTACCTGGATTTCC+TGG 0.317784 6_3:-24369387 None:intergenic
AATAATAATTTCAATGCAAA+TGG 0.327404 6_3:+24372425 Msa0945540:CDS
CTGATGAGGTTTGGAGAAAT+TGG 0.331929 6_3:+24372756 Msa0945540:CDS
TTTGTAGCCATTAGTGTTGT+TGG 0.339715 6_3:-24370236 None:intergenic
ACTCTTGTCTTGAGAAACTA+TGG 0.354103 6_3:-24369078 None:intergenic
CAGCAGCAGCTGATGAGGTT+TGG 0.362969 6_3:+24372747 Msa0945540:CDS
CAAAGCATTAATAGTGTTGT+TGG 0.386850 6_3:+24372554 Msa0945540:CDS
TCCTGTTCAATATTCACGTT+CGG 0.390930 6_3:+24373124 Msa0945540:three_prime_UTR
AAAATACAAGAAACAGGCTT+TGG 0.391584 6_3:-24368914 None:intergenic
GGTGCACATAGTAATTTCTA+TGG 0.395859 6_3:+24372686 Msa0945540:CDS
CTTAATTGAAACAGAAAAGA+TGG 0.398347 6_3:-24369019 None:intergenic
AGATCACCAAGTGCTCTTGC+AGG 0.399590 6_3:-24370422 None:intergenic
GTTGTTGGAGGTGGAGGAGG+AGG 0.400532 6_3:+24372569 Msa0945540:CDS
GGAGGAGGCGTTGGAATGAA+TGG 0.403069 6_3:+24372458 Msa0945540:CDS
AAACACCACTTAGTTTGGTT+GGG 0.406309 6_3:+24372830 Msa0945540:three_prime_UTR
TGTGTATTCAAATGTTATAA+TGG 0.406710 6_3:+24373082 Msa0945540:three_prime_UTR
GCTACAGAAAGCTGCTCAAA+TGG 0.409352 6_3:+24372253 Msa0945540:CDS
TGCTATATTGGATCAAAGTA+AGG 0.411463 6_3:+24372496 Msa0945540:CDS
AATAATGTTATGAACATTAG+TGG 0.411466 6_3:+24372608 Msa0945540:CDS
TGGAGATGAGGGGTGCTTGT+TGG 0.412864 6_3:-24368941 None:intergenic
TATGAACATTAGTGGAAGTA+AGG 0.415131 6_3:+24372616 Msa0945540:CDS
AATAGTGTTGTTGGAGGTGG+AGG 0.417136 6_3:+24372563 Msa0945540:CDS
AATATGCTGTTCAATCTGAT+TGG 0.427517 6_3:+24370516 Msa0945540:CDS
AGTGAATATGTTGTTGTTGA+AGG 0.428537 6_3:-24372096 None:intergenic
AGTGTTGTTGGAGGTGGAGG+AGG 0.433876 6_3:+24372566 Msa0945540:CDS
AGAGCACTTGGTGATCTTAC+TGG 0.434819 6_3:+24370428 Msa0945540:CDS
ATAAAAGGAGGAGAGTTTCC+TGG 0.442673 6_3:+24368968 Msa0945540:five_prime_UTR
AAAACACCACTTAGTTTGGT+TGG 0.442676 6_3:+24372829 Msa0945540:exon
ATGATGGCGCCGCCGCAGTT+TGG 0.444697 6_3:+24372338 Msa0945540:CDS
AACAGAAAAGATGGGATTTG+TGG 0.453016 6_3:-24369010 None:intergenic
CAAGTGCTCTTGCAGGGTTA+TGG 0.453384 6_3:-24370415 None:intergenic
TGGTGAACACATGAAGGTTC+AGG 0.454246 6_3:-24370395 None:intergenic
TCCGAACGTGAATATTGAAC+AGG 0.454569 6_3:-24373125 None:intergenic
AACCACCTCTTAAGAAGAAA+AGG 0.456615 6_3:+24369358 Msa0945540:CDS
CAACAAACTGATCAAATACT+TGG 0.458193 6_3:+24369258 Msa0945540:CDS
AGTTCATGAGGTGATGATAA+TGG 0.461625 6_3:-24372050 None:intergenic
GAGGAAACGAGATTTGAGAT+TGG 0.462517 6_3:-24371948 None:intergenic
ACTATCACCAACAACACTAA+TGG 0.464691 6_3:+24370229 Msa0945540:CDS
AAGGCAAGTTGTGTCCTCTT+CGG 0.471989 6_3:-24370319 None:intergenic
TGTAATGACACTGGATTTGT+TGG 0.477727 6_3:+24372649 Msa0945540:CDS
ATAATAAATGGAGGAGGCGT+TGG 0.478927 6_3:+24372449 Msa0945540:CDS
AAACGAGATTTGAGATTGGT+TGG 0.484142 6_3:-24371944 None:intergenic
AGAAATTGGTCAACCAAGAA+TGG 0.485147 6_3:+24372770 Msa0945540:CDS
GATTTGTTGGGGATAGGAGG+AGG 0.488522 6_3:+24372662 Msa0945540:CDS
TAATTCACTCAACAACATCT+TGG 0.492063 6_3:+24372169 Msa0945540:CDS
AGGAACCTACCAGGAAATCC+AGG 0.493855 6_3:+24369378 Msa0945540:CDS
CTGGATTTGTTGGGGATAGG+AGG 0.495376 6_3:+24372659 Msa0945540:CDS
GATACAGTTCCACCAATTTG+AGG 0.499903 6_3:-24371996 None:intergenic
CATAACCCTGCAAGAGCACT+TGG 0.500225 6_3:+24370416 Msa0945540:CDS
ATACAGTTCCACCAATTTGA+GGG 0.501003 6_3:-24371995 None:intergenic
ATTATTAACCCTCAAATTGG+TGG 0.502270 6_3:+24371987 Msa0945540:CDS
GTGTCATGGTCGAAAGGAAG+GGG 0.506196 6_3:-24372962 None:intergenic
AGTGCTATCACTTCAGCACT+TGG 0.507626 6_3:-24370209 None:intergenic
CTACAGAAAGCTGCTCAAAT+GGG 0.511542 6_3:+24372254 Msa0945540:CDS
AACACCACTTAGTTTGGTTG+GGG 0.514202 6_3:+24372831 Msa0945540:three_prime_UTR
ATTAATAGTGTTGTTGGAGG+TGG 0.514406 6_3:+24372560 Msa0945540:CDS
CGCCATCATGTTTGTAGCAA+CGG 0.514892 6_3:-24372324 None:intergenic
TTTGAACTGAGTTGAAGAGA+AGG 0.515296 6_3:-24372146 None:intergenic
AACATCACAAGTTGTGATAG+TGG 0.515608 6_3:+24369192 Msa0945540:CDS
ATGTGTCATGGTCGAAAGGA+AGG 0.516071 6_3:-24372964 None:intergenic
GTTGTTGCTGTTGCATGTAG+TGG 0.516364 6_3:-24372394 None:intergenic
GTAATGACACTGGATTTGTT+GGG 0.517404 6_3:+24372650 Msa0945540:CDS
GAGATGAAGTTGATGATGAA+AGG 0.518078 6_3:-24372124 None:intergenic
GTGAATATGTTGTTGTTGAA+GGG 0.519299 6_3:-24372095 None:intergenic
AATTACCTGGATTTCCTGGT+AGG 0.520896 6_3:-24369383 None:intergenic
ATTCCAAAATATGTGGTACA+AGG 0.520937 6_3:+24370546 Msa0945540:CDS
TTAATTGAAACAGAAAAGAT+GGG 0.527878 6_3:-24369018 None:intergenic
GAAGAGGACACAACTTGCCT+TGG 0.527889 6_3:+24370321 Msa0945540:CDS
ATAATAATTTCAATGCAAAT+GGG 0.528123 6_3:+24372426 Msa0945540:CDS
ACATACATACCTGGAAAAGA+TGG 0.528499 6_3:-24370591 None:intergenic
AACATTAGTGGAAGTAAGGG+TGG 0.535289 6_3:+24372620 Msa0945540:CDS
CACATAGTAATTTCTATGGA+GGG 0.535940 6_3:+24372690 Msa0945540:CDS
TTTGTTGAAGTATGAGAATG+TGG 0.537355 6_3:-24369294 None:intergenic
ACTGTGAGTAATAATAATGC+AGG 0.538175 6_3:+24372281 Msa0945540:CDS
CAAGTGCAGAAATTAGAAAG+AGG 0.540304 6_3:+24370360 Msa0945540:CDS
CAATTTGAGGGTTAATAATG+GGG 0.543880 6_3:-24371983 None:intergenic
AATGGGGTTTAAAGGTAATG+AGG 0.552566 6_3:-24371967 None:intergenic
ATTAGTGGAAGTAAGGGTGG+TGG 0.553858 6_3:+24372623 Msa0945540:CDS
AGCATTAATAGTGTTGTTGG+AGG 0.564315 6_3:+24372557 Msa0945540:CDS
GCACATAGTAATTTCTATGG+AGG 0.570101 6_3:+24372689 Msa0945540:CDS
TTGTTGGGGATAGGAGGAGG+AGG 0.571045 6_3:+24372665 Msa0945540:CDS
AAAGCTCATTCCAAAATATG+TGG 0.572953 6_3:+24370539 Msa0945540:CDS
ACACTGGATTTGTTGGGGAT+AGG 0.573986 6_3:+24372656 Msa0945540:CDS
AAGTGCAGAAATTAGAAAGA+GGG 0.575321 6_3:+24370361 Msa0945540:CDS
TACCGTTGCTACAAACATGA+TGG 0.575806 6_3:+24372322 Msa0945540:CDS
CATAGTAATTTCTATGGAGG+GGG 0.576896 6_3:+24372692 Msa0945540:CDS
CGTATGTGAAATATGCAACA+AGG 0.589045 6_3:+24370265 Msa0945540:CDS
ATGAACATTAGTGGAAGTAA+GGG 0.589532 6_3:+24372617 Msa0945540:CDS
GAACGTGAATATTGAACAGG+AGG 0.590078 6_3:-24373122 None:intergenic
TGTGTCATGGTCGAAAGGAA+GGG 0.590566 6_3:-24372963 None:intergenic
ACATAGTAATTTCTATGGAG+GGG 0.591190 6_3:+24372691 Msa0945540:CDS
GATCACCAAGTGCTCTTGCA+GGG 0.594376 6_3:-24370421 None:intergenic
TGTCATGGTCGAAAGGAAGG+GGG 0.594893 6_3:-24372961 None:intergenic
ACATCACAAGTTGTGATAGT+GGG 0.595444 6_3:+24369193 Msa0945540:CDS
GGGTTATGGTGAACACATGA+AGG 0.595455 6_3:-24370401 None:intergenic
AAGAAGAAAAGGAACCTACC+AGG 0.596110 6_3:+24369369 Msa0945540:CDS
ATCAATGATTTGATGTGTCA+TGG 0.599292 6_3:-24372976 None:intergenic
GGCTCCCCAACCAAACTAAG+TGG 0.601479 6_3:-24372835 None:intergenic
AGCTTTCTGTAGCAATGCAG+TGG 0.610000 6_3:-24372243 None:intergenic
TTCCAAAATATGTGGTACAA+GGG 0.611826 6_3:+24370547 Msa0945540:CDS
ACAAGCTATCTAGGAAGCAG+AGG 0.613878 6_3:-24369045 None:intergenic
ATGGAAGCTTGTGATCTGAA+TGG 0.617097 6_3:-24372031 None:intergenic
AATCTTCAACTGCACCGAAG+AGG 0.621618 6_3:+24370305 Msa0945540:CDS
TTATGTGTAGACTCTTATGA+TGG 0.635701 6_3:+24373050 Msa0945540:three_prime_UTR
TAATGACACTGGATTTGTTG+GGG 0.637157 6_3:+24372651 Msa0945540:CDS
AATTGGTCAACCAAGAATGG+AGG 0.638927 6_3:+24372773 Msa0945540:CDS
GTATGTGAAATATGCAACAA+GGG 0.639897 6_3:+24370266 Msa0945540:CDS
AATGGGATAATAAATGGAGG+AGG 0.644754 6_3:+24372443 Msa0945540:CDS
TGGTGGAGATGTAATGACAC+TGG 0.649106 6_3:+24372640 Msa0945540:CDS
GTCATGGTCGAAAGGAAGGG+GGG 0.655496 6_3:-24372960 None:intergenic
TGCACTACACCAAACTGCGG+CGG 0.655717 6_3:-24372347 None:intergenic
GCAAATGGGATAATAAATGG+AGG 0.656300 6_3:+24372440 Msa0945540:CDS
TCTACACATAACACTTACAC+TGG 0.657671 6_3:-24373038 None:intergenic
GATGGGATTTGTGGAACCAG+AGG 0.657823 6_3:-24369001 None:intergenic
TTTGATGTGTCATGGTCGAA+AGG 0.659881 6_3:-24372968 None:intergenic
TAATAATGCAGGTATCATGA+CGG 0.660595 6_3:+24372292 Msa0945540:CDS
CATCTCCACACCATAAAAGG+AGG 0.660797 6_3:+24368956 Msa0945540:five_prime_UTR
AGGGAATACAAATGTGACTG+TGG 0.667636 6_3:+24370566 Msa0945540:CDS
TTTGGTGTAGTGCAACAACA+AGG 0.680990 6_3:+24372356 Msa0945540:CDS
GTTGCAGCAGATAAATGGAG+TGG 0.688832 6_3:-24372203 None:intergenic
CTCTTGACTTGAGAACCCAA+AGG 0.695930 6_3:+24373213 Msa0945540:three_prime_UTR
GAGAACAACAAAGCAAACGA+AGG 0.700937 6_3:+24371900 Msa0945540:CDS
ACTACTGACATGAGTTCATG+AGG 0.716939 6_3:-24372062 None:intergenic
TGTTGCACTACACCAAACTG+CGG 0.718918 6_3:-24372350 None:intergenic
AACGTGAATATTGAACAGGA+GGG 0.719567 6_3:-24373121 None:intergenic
AATGCAGTGGCTGACATGTG+AGG 0.731584 6_3:-24372230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATTATTAAATTTATT+TGG + chr6_3:24371627-24371646 Msa0945540:intron 0.0%
!! ATAAACTAAATAGAAAAAAA+AGG + chr6_3:24369128-24369147 Msa0945540:five_prime_UTR 10.0%
!! TAAACTAAATAGAAAAAAAA+GGG + chr6_3:24369129-24369148 Msa0945540:five_prime_UTR 10.0%
!! AATAATAATAATAATAGCAA+TGG + chr6_3:24369318-24369337 Msa0945540:CDS 10.0%
!! AAAAAAAAAAAAATAGACAA+TGG + chr6_3:24369831-24369850 Msa0945540:intron 10.0%
!! TAAAATAAATGATGAATTAT+TGG + chr6_3:24370029-24370048 Msa0945540:intron 10.0%
!! CAATATGCAAATAAAATTAA+AGG - chr6_3:24369472-24369491 None:intergenic 15.0%
!! TGTTACATAATTAAAATCAA+GGG - chr6_3:24369510-24369529 None:intergenic 15.0%
!! TTGTTACATAATTAAAATCA+AGG - chr6_3:24369511-24369530 None:intergenic 15.0%
!!! TACATAATTATTGTTATTCA+TGG + chr6_3:24369598-24369617 Msa0945540:intron 15.0%
!!! ACATAATTATTGTTATTCAT+GGG + chr6_3:24369599-24369618 Msa0945540:intron 15.0%
!!! TTTTTTTTTTTACCTCATAT+TGG - chr6_3:24369822-24369841 None:intergenic 15.0%
!! TTTAATTAAGACATTTCTAT+AGG + chr6_3:24369876-24369895 Msa0945540:intron 15.0%
!!! TTTTTAACTTTTTGTAGTTT+AGG + chr6_3:24370825-24370844 Msa0945540:intron 15.0%
!! GAAAATAAAATACTATATGA+GGG - chr6_3:24370890-24370909 None:intergenic 15.0%
!! AGAAAATAAAATACTATATG+AGG - chr6_3:24370891-24370910 None:intergenic 15.0%
!! ACTATTAATTGATAGAAAAA+CGG - chr6_3:24371010-24371029 None:intergenic 15.0%
!! ATATATTATAATTACTCATG+AGG - chr6_3:24371731-24371750 None:intergenic 15.0%
!! AATAATAATTTCAATGCAAA+TGG + chr6_3:24372425-24372444 Msa0945540:CDS 15.0%
!! ATAATAATTTCAATGCAAAT+GGG + chr6_3:24372426-24372445 Msa0945540:CDS 15.0%
!!! TACTATTATTAACTATTTCT+TGG - chr6_3:24372859-24372878 None:intergenic 15.0%
!! ATCAAATCATTGATATTAAT+TGG + chr6_3:24372985-24373004 Msa0945540:three_prime_UTR 15.0%
!! TTAATTGAAACAGAAAAGAT+GGG - chr6_3:24369021-24369040 None:intergenic 20.0%
!! AGAATACAAAATAAATTACC+TGG - chr6_3:24369399-24369418 None:intergenic 20.0%
!!! TTTTTGTGAGATATCATTTT+TGG - chr6_3:24369797-24369816 None:intergenic 20.0%
!! AAAAATGATATCTCACAAAA+AGG + chr6_3:24369796-24369815 Msa0945540:intron 20.0%
!! CTTCACTTAAAAGAATAATT+AGG - chr6_3:24369951-24369970 None:intergenic 20.0%
!!! AATAACGTGTTTAATTTGTT+TGG + chr6_3:24370179-24370198 Msa0945540:intron 20.0%
!!! TTGATGATGTAATAGAAAAA+AGG - chr6_3:24370922-24370941 None:intergenic 20.0%
!! TCAATATATTACATCATTCT+CGG + chr6_3:24370938-24370957 Msa0945540:intron 20.0%
!! TGATATGTTTAATGCTATAT+TGG + chr6_3:24372484-24372503 Msa0945540:CDS 20.0%
!! AATAATGTTATGAACATTAG+TGG + chr6_3:24372608-24372627 Msa0945540:CDS 20.0%
!!! TATTCAACTTTTTGAATTAG+TGG + chr6_3:24372877-24372896 Msa0945540:three_prime_UTR 20.0%
!!! ATTCAACTTTTTGAATTAGT+GGG + chr6_3:24372878-24372897 Msa0945540:three_prime_UTR 20.0%
!! ACATTTGAATACACATTTAT+GGG - chr6_3:24373077-24373096 None:intergenic 20.0%
!! AACATTTGAATACACATTTA+TGG - chr6_3:24373078-24373097 None:intergenic 20.0%
!! TGTGTATTCAAATGTTATAA+TGG + chr6_3:24373082-24373101 Msa0945540:three_prime_UTR 20.0%
!!! ATTTTAATTTGTGCATTCAT+TGG - chr6_3:24373181-24373200 None:intergenic 20.0%
! CTTAATTGAAACAGAAAAGA+TGG - chr6_3:24369022-24369041 None:intergenic 25.0%
! AAGAAAAAAACAAGCTATCT+AGG - chr6_3:24369057-24369076 None:intergenic 25.0%
!! CTACTTCCTTTTTCTTAATT+TGG + chr6_3:24369161-24369180 Msa0945540:five_prime_UTR 25.0%
! ACATAGCCAAATTAAGAAAA+AGG - chr6_3:24369170-24369189 None:intergenic 25.0%
! TTGTTATAGAATATGATGCT+TGG - chr6_3:24369640-24369659 None:intergenic 25.0%
!! TTTAGAATTAACCAATGAGA+AGG - chr6_3:24369715-24369734 None:intergenic 25.0%
!! AGTCTTATCCTTTAATTTCA+TGG - chr6_3:24369904-24369923 None:intergenic 25.0%
! AAGACAAAGATCTATATAGT+GGG + chr6_3:24369968-24369987 Msa0945540:intron 25.0%
! GTGTGAAACAAAGAAAAAAT+AGG - chr6_3:24370140-24370159 None:intergenic 25.0%
! GAAATGTGAATAAAAACTTG+TGG + chr6_3:24370616-24370635 Msa0945540:intron 25.0%
!!! AAAAGTGTTCATACTTCATA+GGG - chr6_3:24370790-24370809 None:intergenic 25.0%
!! CAAGTTGTATAATGCATTTT+TGG + chr6_3:24370974-24370993 Msa0945540:intron 25.0%
! GTCTCTAATAATAAGAGTTT+AGG + chr6_3:24371034-24371053 Msa0945540:intron 25.0%
!! TGAATGAATGAATATCGTTT+TGG - chr6_3:24371186-24371205 None:intergenic 25.0%
! GTCGTTGTATGTTATTAATT+TGG + chr6_3:24371268-24371287 Msa0945540:intron 25.0%
! AGACATCTTAATATTTCTTC+AGG - chr6_3:24371416-24371435 None:intergenic 25.0%
! GTAACTTATAATTGTACTCA+TGG - chr6_3:24371599-24371618 None:intergenic 25.0%
! TTATATTATAATACCCATGC+AGG + chr6_3:24371704-24371723 Msa0945540:intron 25.0%
! ATTAATAAGAAACACTAGCT+AGG - chr6_3:24371810-24371829 None:intergenic 25.0%
! AGCTAGTGTTTCTTATTAAT+TGG + chr6_3:24371810-24371829 Msa0945540:intron 25.0%
! AATGCAAATGGGATAATAAA+TGG + chr6_3:24372437-24372456 Msa0945540:CDS 25.0%
!! TTCAACTTTTTGAATTAGTG+GGG + chr6_3:24372879-24372898 Msa0945540:three_prime_UTR 25.0%
AAAATACAAGAAACAGGCTT+TGG - chr6_3:24368917-24368936 None:intergenic 30.0%
GGCATAAAAATACAAGAAAC+AGG - chr6_3:24368923-24368942 None:intergenic 30.0%
CAACAAACTGATCAAATACT+TGG + chr6_3:24369258-24369277 Msa0945540:CDS 30.0%
TTTGTTGAAGTATGAGAATG+TGG - chr6_3:24369297-24369316 None:intergenic 30.0%
AATAAATTACCTGGATTTCC+TGG - chr6_3:24369390-24369409 None:intergenic 30.0%
TAGAATATGATGCTTGGAAT+TGG - chr6_3:24369634-24369653 None:intergenic 30.0%
TATAGGCTCCATGAAATTAA+AGG + chr6_3:24369893-24369912 Msa0945540:intron 30.0%
TTAAAGGATAAGACTTGATC+TGG + chr6_3:24369909-24369928 Msa0945540:intron 30.0%
GAAGACAAAGATCTATATAG+TGG + chr6_3:24369967-24369986 Msa0945540:intron 30.0%
AGACAAAGATCTATATAGTG+GGG + chr6_3:24369969-24369988 Msa0945540:intron 30.0%
CAACAGTGTACAACAATTAT+TGG - chr6_3:24370104-24370123 None:intergenic 30.0%
GTATGTGAAATATGCAACAA+GGG + chr6_3:24370266-24370285 Msa0945540:CDS 30.0%
AAGTGCAGAAATTAGAAAGA+GGG + chr6_3:24370361-24370380 Msa0945540:CDS 30.0%
AATATGCTGTTCAATCTGAT+TGG + chr6_3:24370516-24370535 Msa0945540:CDS 30.0%
AAAGCTCATTCCAAAATATG+TGG + chr6_3:24370539-24370558 Msa0945540:CDS 30.0%
ATTCCAAAATATGTGGTACA+AGG + chr6_3:24370546-24370565 Msa0945540:CDS 30.0%
TTCCAAAATATGTGGTACAA+GGG + chr6_3:24370547-24370566 Msa0945540:CDS 30.0%
AGCTAAGAATAAGATAGACT+GGG + chr6_3:24370751-24370770 Msa0945540:intron 30.0%
!! GAAAAGTGTTCATACTTCAT+AGG - chr6_3:24370791-24370810 None:intergenic 30.0%
AAACATCGCTAAAAACGTAA+AGG + chr6_3:24371229-24371248 Msa0945540:intron 30.0%
CAATTTGAGGGTTAATAATG+GGG - chr6_3:24371986-24372005 None:intergenic 30.0%
CCAATTTGAGGGTTAATAAT+GGG - chr6_3:24371987-24372006 None:intergenic 30.0%
ACCAATTTGAGGGTTAATAA+TGG - chr6_3:24371988-24372007 None:intergenic 30.0%
ATTATTAACCCTCAAATTGG+TGG + chr6_3:24371987-24372006 Msa0945540:CDS 30.0%
! GTGAATATGTTGTTGTTGAA+GGG - chr6_3:24372098-24372117 None:intergenic 30.0%
! AGTGAATATGTTGTTGTTGA+AGG - chr6_3:24372099-24372118 None:intergenic 30.0%
TAATTCACTCAACAACATCT+TGG + chr6_3:24372169-24372188 Msa0945540:CDS 30.0%
AACAACATCTTGGAAGAAAA+TGG + chr6_3:24372179-24372198 Msa0945540:CDS 30.0%
ACTGTGAGTAATAATAATGC+AGG + chr6_3:24372281-24372300 Msa0945540:CDS 30.0%
TAATAATGCAGGTATCATGA+CGG + chr6_3:24372292-24372311 Msa0945540:CDS 30.0%
TGCTATATTGGATCAAAGTA+AGG + chr6_3:24372496-24372515 Msa0945540:CDS 30.0%
! CAAAGCATTAATAGTGTTGT+TGG + chr6_3:24372554-24372573 Msa0945540:CDS 30.0%
TATGAACATTAGTGGAAGTA+AGG + chr6_3:24372616-24372635 Msa0945540:CDS 30.0%
ATGAACATTAGTGGAAGTAA+GGG + chr6_3:24372617-24372636 Msa0945540:CDS 30.0%
CACATAGTAATTTCTATGGA+GGG + chr6_3:24372690-24372709 Msa0945540:CDS 30.0%
ACATAGTAATTTCTATGGAG+GGG + chr6_3:24372691-24372710 Msa0945540:CDS 30.0%
TTTGAAAACACCACTTAGTT+TGG + chr6_3:24372825-24372844 Msa0945540:exon 30.0%
ATCAATGATTTGATGTGTCA+TGG - chr6_3:24372979-24372998 None:intergenic 30.0%
TTATGTGTAGACTCTTATGA+TGG + chr6_3:24373050-24373069 Msa0945540:three_prime_UTR 30.0%
AACAGAAAAGATGGGATTTG+TGG - chr6_3:24369013-24369032 None:intergenic 35.0%
ACTCTTGTCTTGAGAAACTA+TGG - chr6_3:24369081-24369100 None:intergenic 35.0%
AACATCACAAGTTGTGATAG+TGG + chr6_3:24369192-24369211 Msa0945540:CDS 35.0%
ACATCACAAGTTGTGATAGT+GGG + chr6_3:24369193-24369212 Msa0945540:CDS 35.0%
AACCACCTCTTAAGAAGAAA+AGG + chr6_3:24369358-24369377 Msa0945540:CDS 35.0%
! TTCCTTTTCTTCTTAAGAGG+TGG - chr6_3:24369363-24369382 None:intergenic 35.0%
! AGGTTCCTTTTCTTCTTAAG+AGG - chr6_3:24369366-24369385 None:intergenic 35.0%
ACTTCTTTCAACCTTCTCAT+TGG + chr6_3:24369701-24369720 Msa0945540:intron 35.0%
!! TTTTGGAAACGAAGATCGTT+TGG - chr6_3:24369780-24369799 None:intergenic 35.0%
ACTATCACCAACAACACTAA+TGG + chr6_3:24370229-24370248 Msa0945540:CDS 35.0%
TTTGTAGCCATTAGTGTTGT+TGG - chr6_3:24370239-24370258 None:intergenic 35.0%
CGTATGTGAAATATGCAACA+AGG + chr6_3:24370265-24370284 Msa0945540:CDS 35.0%
!!! GTTCTTTGTTTTAGCTTCCA+AGG - chr6_3:24370341-24370360 None:intergenic 35.0%
CAAGTGCAGAAATTAGAAAG+AGG + chr6_3:24370360-24370379 Msa0945540:CDS 35.0%
! AAGCACTTTTGTAGAAAGCA+TGG + chr6_3:24370458-24370477 Msa0945540:CDS 35.0%
! TTCCCTTGTACCACATATTT+TGG - chr6_3:24370552-24370571 None:intergenic 35.0%
ACATACATACCTGGAAAAGA+TGG - chr6_3:24370594-24370613 None:intergenic 35.0%
ACATTTCACACATACATACC+TGG - chr6_3:24370603-24370622 None:intergenic 35.0%
CTTATTCTTAGCTGCCAAAA+CGG - chr6_3:24370744-24370763 None:intergenic 35.0%
CAGCTAAGAATAAGATAGAC+TGG + chr6_3:24370750-24370769 Msa0945540:intron 35.0%
TCAAAGATTCCTACGTATGT+AGG + chr6_3:24371655-24371674 Msa0945540:intron 35.0%
CAAAGATTCCTACGTATGTA+GGG + chr6_3:24371656-24371675 Msa0945540:intron 35.0%
TTTATACACCCTACATACGT+AGG - chr6_3:24371667-24371686 None:intergenic 35.0%
! AAACGAGATTTGAGATTGGT+TGG - chr6_3:24371947-24371966 None:intergenic 35.0%
AATGGGGTTTAAAGGTAATG+AGG - chr6_3:24371970-24371989 None:intergenic 35.0%
! GGGTTAATAATGGGGTTTAA+AGG - chr6_3:24371978-24371997 None:intergenic 35.0%
CCCATTATTAACCCTCAAAT+TGG + chr6_3:24371984-24372003 Msa0945540:CDS 35.0%
ATACAGTTCCACCAATTTGA+GGG - chr6_3:24371998-24372017 None:intergenic 35.0%
AGTTCATGAGGTGATGATAA+TGG - chr6_3:24372053-24372072 None:intergenic 35.0%
!! ATGTTGTTGTTGAAGGGTTT+TGG - chr6_3:24372092-24372111 None:intergenic 35.0%
!! GAGATGAAGTTGATGATGAA+AGG - chr6_3:24372127-24372146 None:intergenic 35.0%
! TTTGAACTGAGTTGAAGAGA+AGG - chr6_3:24372149-24372168 None:intergenic 35.0%
GCAAATGGGATAATAAATGG+AGG + chr6_3:24372440-24372459 Msa0945540:CDS 35.0%
AATGGGATAATAAATGGAGG+AGG + chr6_3:24372443-24372462 Msa0945540:CDS 35.0%
! AGCATTAATAGTGTTGTTGG+AGG + chr6_3:24372557-24372576 Msa0945540:CDS 35.0%
! ATTAATAGTGTTGTTGGAGG+TGG + chr6_3:24372560-24372579 Msa0945540:CDS 35.0%
TGTAATGACACTGGATTTGT+TGG + chr6_3:24372649-24372668 Msa0945540:CDS 35.0%
! GTAATGACACTGGATTTGTT+GGG + chr6_3:24372650-24372669 Msa0945540:CDS 35.0%
!! TAATGACACTGGATTTGTTG+GGG + chr6_3:24372651-24372670 Msa0945540:CDS 35.0%
GGTGCACATAGTAATTTCTA+TGG + chr6_3:24372686-24372705 Msa0945540:CDS 35.0%
GCACATAGTAATTTCTATGG+AGG + chr6_3:24372689-24372708 Msa0945540:CDS 35.0%
CATAGTAATTTCTATGGAGG+GGG + chr6_3:24372692-24372711 Msa0945540:CDS 35.0%
AGAAATTGGTCAACCAAGAA+TGG + chr6_3:24372770-24372789 Msa0945540:CDS 35.0%
AGATTCAAATCCTCCATTCT+TGG - chr6_3:24372786-24372805 None:intergenic 35.0%
! AAAACACCACTTAGTTTGGT+TGG + chr6_3:24372829-24372848 Msa0945540:exon 35.0%
! AAACACCACTTAGTTTGGTT+GGG + chr6_3:24372830-24372849 Msa0945540:three_prime_UTR 35.0%
TCTACACATAACACTTACAC+TGG - chr6_3:24373041-24373060 None:intergenic 35.0%
AACGTGAATATTGAACAGGA+GGG - chr6_3:24373124-24373143 None:intergenic 35.0%
TCCTGTTCAATATTCACGTT+CGG + chr6_3:24373124-24373143 Msa0945540:three_prime_UTR 35.0%
AGAGCCACAAAAACTAGATA+AGG + chr6_3:24373241-24373260 Msa0945540:three_prime_UTR 35.0%
! TTTTATGGTGTGGAGATGAG+GGG - chr6_3:24368954-24368973 None:intergenic 40.0%
! CTTTTATGGTGTGGAGATGA+GGG - chr6_3:24368955-24368974 None:intergenic 40.0%
! AGGAAACTCTCCTCCTTTTA+TGG - chr6_3:24368969-24368988 None:intergenic 40.0%
ATAAAAGGAGGAGAGTTTCC+TGG + chr6_3:24368968-24368987 Msa0945540:five_prime_UTR 40.0%
AAGAAGAAAAGGAACCTACC+AGG + chr6_3:24369369-24369388 Msa0945540:CDS 40.0%
AATTACCTGGATTTCCTGGT+AGG - chr6_3:24369386-24369405 None:intergenic 40.0%
CTCACAAAAAGGCCAATATG+AGG + chr6_3:24369807-24369826 Msa0945540:intron 40.0%
GTGTGTGTAAGTAAGTAGCT+AGG + chr6_3:24370051-24370070 Msa0945540:intron 40.0%
!! TTCGGTGCAGTTGAAGATTT+TGG - chr6_3:24370304-24370323 None:intergenic 40.0%
! GAAAGCATGGTGAGAAAAAG+TGG + chr6_3:24370471-24370490 Msa0945540:CDS 40.0%
AGGGAATACAAATGTGACTG+TGG + chr6_3:24370566-24370585 Msa0945540:CDS 40.0%
TTCATACTTCATAGGGTGTG+TGG - chr6_3:24370783-24370802 None:intergenic 40.0%
GAGAACAACAAAGCAAACGA+AGG + chr6_3:24371900-24371919 Msa0945540:CDS 40.0%
! GAGGAAACGAGATTTGAGAT+TGG - chr6_3:24371951-24371970 None:intergenic 40.0%
GATACAGTTCCACCAATTTG+AGG - chr6_3:24371999-24372018 None:intergenic 40.0%
ATGGAAGCTTGTGATCTGAA+TGG - chr6_3:24372034-24372053 None:intergenic 40.0%
ACTACTGACATGAGTTCATG+AGG - chr6_3:24372065-24372084 None:intergenic 40.0%
!! TTGTTGTTGAAGGGTTTTGG+TGG - chr6_3:24372089-24372108 None:intergenic 40.0%
GTGAAGTTGCAGCAGATAAA+TGG - chr6_3:24372211-24372230 None:intergenic 40.0%
CTACAGAAAGCTGCTCAAAT+GGG + chr6_3:24372254-24372273 Msa0945540:CDS 40.0%
TACCGTTGCTACAAACATGA+TGG + chr6_3:24372322-24372341 Msa0945540:CDS 40.0%
! TTTGGTGTAGTGCAACAACA+AGG + chr6_3:24372356-24372375 Msa0945540:CDS 40.0%
! ATAATAAATGGAGGAGGCGT+TGG + chr6_3:24372449-24372468 Msa0945540:CDS 40.0%
AACATTAGTGGAAGTAAGGG+TGG + chr6_3:24372620-24372639 Msa0945540:CDS 40.0%
CTGATGAGGTTTGGAGAAAT+TGG + chr6_3:24372756-24372775 Msa0945540:CDS 40.0%
AATTGGTCAACCAAGAATGG+AGG + chr6_3:24372773-24372792 Msa0945540:CDS 40.0%
! AACACCACTTAGTTTGGTTG+GGG + chr6_3:24372831-24372850 Msa0945540:three_prime_UTR 40.0%
TTTGATGTGTCATGGTCGAA+AGG - chr6_3:24372971-24372990 None:intergenic 40.0%
GAACGTGAATATTGAACAGG+AGG - chr6_3:24373125-24373144 None:intergenic 40.0%
TCCGAACGTGAATATTGAAC+AGG - chr6_3:24373128-24373147 None:intergenic 40.0%
TTGTGGCTCTCATTTCCTTT+GGG - chr6_3:24373231-24373250 Msa0945550:three_prime_UTR 40.0%
TTTGTGGCTCTCATTTCCTT+TGG - chr6_3:24373232-24373251 Msa0945550:three_prime_UTR 40.0%
! CCTTTTATGGTGTGGAGATG+AGG - chr6_3:24368956-24368975 None:intergenic 45.0%
CCTCATCTCCACACCATAAA+AGG + chr6_3:24368953-24368972 Msa0945540:five_prime_UTR 45.0%
CATCTCCACACCATAAAAGG+AGG + chr6_3:24368956-24368975 Msa0945540:five_prime_UTR 45.0%
! ACTCTCCTCCTTTTATGGTG+TGG - chr6_3:24368964-24368983 None:intergenic 45.0%
!! TCCTGGTTTTTGTCTTCCTC+TGG + chr6_3:24368985-24369004 Msa0945540:five_prime_UTR 45.0%
ACCAGAGGAAGACAAAAACC+AGG - chr6_3:24368989-24369008 None:intergenic 45.0%
ACAAGCTATCTAGGAAGCAG+AGG - chr6_3:24369048-24369067 None:intergenic 45.0%
AGTGCTATCACTTCAGCACT+TGG - chr6_3:24370212-24370231 None:intergenic 45.0%
AATCTTCAACTGCACCGAAG+AGG + chr6_3:24370305-24370324 Msa0945540:CDS 45.0%
AAGGCAAGTTGTGTCCTCTT+CGG - chr6_3:24370322-24370341 None:intergenic 45.0%
TGGTGAACACATGAAGGTTC+AGG - chr6_3:24370398-24370417 None:intergenic 45.0%
GGGTTATGGTGAACACATGA+AGG - chr6_3:24370404-24370423 None:intergenic 45.0%
! AGAGCACTTGGTGATCTTAC+TGG + chr6_3:24370428-24370447 Msa0945540:CDS 45.0%
! ACTGTGGAACCATCTTTTCC+AGG + chr6_3:24370582-24370601 Msa0945540:CDS 45.0%
TTACTCATGAGGACCTGCAT+GGG - chr6_3:24371720-24371739 None:intergenic 45.0%
ATTACTCATGAGGACCTGCA+TGG - chr6_3:24371721-24371740 None:intergenic 45.0%
GTTGCAGCAGATAAATGGAG+TGG - chr6_3:24372206-24372225 None:intergenic 45.0%
AGCTTTCTGTAGCAATGCAG+TGG - chr6_3:24372246-24372265 None:intergenic 45.0%
GCTACAGAAAGCTGCTCAAA+TGG + chr6_3:24372253-24372272 Msa0945540:CDS 45.0%
CGCCATCATGTTTGTAGCAA+CGG - chr6_3:24372327-24372346 None:intergenic 45.0%
TGTTGCACTACACCAAACTG+CGG - chr6_3:24372353-24372372 None:intergenic 45.0%
! GTTGTTGCTGTTGCATGTAG+TGG - chr6_3:24372397-24372416 None:intergenic 45.0%
! AATAGTGTTGTTGGAGGTGG+AGG + chr6_3:24372563-24372582 Msa0945540:CDS 45.0%
ATTAGTGGAAGTAAGGGTGG+TGG + chr6_3:24372623-24372642 Msa0945540:CDS 45.0%
TGGTGGAGATGTAATGACAC+TGG + chr6_3:24372640-24372659 Msa0945540:CDS 45.0%
!! ACACTGGATTTGTTGGGGAT+AGG + chr6_3:24372656-24372675 Msa0945540:CDS 45.0%
TGTGTCATGGTCGAAAGGAA+GGG - chr6_3:24372966-24372985 None:intergenic 45.0%
ATGTGTCATGGTCGAAAGGA+AGG - chr6_3:24372967-24372986 None:intergenic 45.0%
! CTCTTGACTTGAGAACCCAA+AGG + chr6_3:24373213-24373232 Msa0945540:three_prime_UTR 45.0%
!!! TCAATTTTTTATTTTTTTTA+AGG - chr6_3:24371381-24371400 None:intergenic 5.0%
GATGGGATTTGTGGAACCAG+AGG - chr6_3:24369004-24369023 None:intergenic 50.0%
AGGAACCTACCAGGAAATCC+AGG + chr6_3:24369378-24369397 Msa0945540:CDS 50.0%
GAAGAGGACACAACTTGCCT+TGG + chr6_3:24370321-24370340 Msa0945540:CDS 50.0%
CAAGTGCTCTTGCAGGGTTA+TGG - chr6_3:24370418-24370437 None:intergenic 50.0%
!! CATAACCCTGCAAGAGCACT+TGG + chr6_3:24370416-24370435 Msa0945540:CDS 50.0%
GATCACCAAGTGCTCTTGCA+GGG - chr6_3:24370424-24370443 None:intergenic 50.0%
AGATCACCAAGTGCTCTTGC+AGG - chr6_3:24370425-24370444 None:intergenic 50.0%
!!! AAAGTGTGTGCGTGCCGTTT+TGG + chr6_3:24370727-24370746 Msa0945540:intron 50.0%
AATGCAGTGGCTGACATGTG+AGG - chr6_3:24372233-24372252 None:intergenic 50.0%
!! CTGGATTTGTTGGGGATAGG+AGG + chr6_3:24372659-24372678 Msa0945540:CDS 50.0%
!! GATTTGTTGGGGATAGGAGG+AGG + chr6_3:24372662-24372681 Msa0945540:CDS 50.0%
! AGGGGGTACACAACAACAAC+AGG + chr6_3:24372709-24372728 Msa0945540:CDS 50.0%
TGTCATGGTCGAAAGGAAGG+GGG - chr6_3:24372964-24372983 None:intergenic 50.0%
GTGTCATGGTCGAAAGGAAG+GGG - chr6_3:24372965-24372984 None:intergenic 50.0%
!! TGGAGATGAGGGGTGCTTGT+TGG - chr6_3:24368944-24368963 None:intergenic 55.0%
TGCACTACACCAAACTGCGG+CGG - chr6_3:24372350-24372369 None:intergenic 55.0%
!! GGAGGAGGCGTTGGAATGAA+TGG + chr6_3:24372458-24372477 Msa0945540:CDS 55.0%
! AGTGTTGTTGGAGGTGGAGG+AGG + chr6_3:24372566-24372585 Msa0945540:CDS 55.0%
TTGTTGGGGATAGGAGGAGG+AGG + chr6_3:24372665-24372684 Msa0945540:CDS 55.0%
CAGCAGCAGCTGATGAGGTT+TGG + chr6_3:24372747-24372766 Msa0945540:CDS 55.0%
GGCTCCCCAACCAAACTAAG+TGG - chr6_3:24372838-24372857 None:intergenic 55.0%
GTCATGGTCGAAAGGAAGGG+GGG - chr6_3:24372963-24372982 None:intergenic 55.0%
GTTGTTGGAGGTGGAGGAGG+AGG + chr6_3:24372569-24372588 Msa0945540:CDS 60.0%
AGCAGCAGCAGCAGCTGATG+AGG + chr6_3:24372742-24372761 Msa0945540:CDS 60.0%
! TCGAAAGGAAGGGGGGTGTG+GGG - chr6_3:24372956-24372975 None:intergenic 60.0%
! GTCGAAAGGAAGGGGGGTGT+GGG - chr6_3:24372957-24372976 None:intergenic 60.0%
! ATGATGGCGCCGCCGCAGTT+TGG + chr6_3:24372338-24372357 Msa0945540:CDS 65.0%
GGTCGAAAGGAAGGGGGGTG+TGG - chr6_3:24372958-24372977 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 24368896 24373264 24368896 ID=Msa0945540;Name=Msa0945540
chr6_3 mRNA 24368896 24373264 24368896 ID=Msa0945540-mRNA-1;Parent=Msa0945540;Name=Msa0945540-mRNA-1;_AED=0.28;_eAED=0.28;_QI=290|1|1|1|1|1|3|435|529
chr6_3 exon 24368896 24369399 24368896 ID=Msa0945540-mRNA-1:exon:6953;Parent=Msa0945540-mRNA-1
chr6_3 exon 24370207 24370603 24370207 ID=Msa0945540-mRNA-1:exon:6954;Parent=Msa0945540-mRNA-1
chr6_3 exon 24371851 24373264 24371851 ID=Msa0945540-mRNA-1:exon:6955;Parent=Msa0945540-mRNA-1
chr6_3 five_prime_UTR 24368896 24369185 24368896 ID=Msa0945540-mRNA-1:five_prime_utr;Parent=Msa0945540-mRNA-1
chr6_3 CDS 24369186 24369399 24369186 ID=Msa0945540-mRNA-1:cds;Parent=Msa0945540-mRNA-1
chr6_3 CDS 24370207 24370603 24370207 ID=Msa0945540-mRNA-1:cds;Parent=Msa0945540-mRNA-1
chr6_3 CDS 24371851 24372829 24371851 ID=Msa0945540-mRNA-1:cds;Parent=Msa0945540-mRNA-1
chr6_3 three_prime_UTR 24372830 24373264 24372830 ID=Msa0945540-mRNA-1:three_prime_utr;Parent=Msa0945540-mRNA-1
Gene Sequence

>Msa0945540

ATGTCAAACATCACAAGTTGTGATAGTGGGAGTTTCTCTACAGAGAATACAAGAGAAGATGCAGTTAAACAGCAACAAACTGATCAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAAATAATAATAATAATAATAGCAATGGTTCTAACACAGATTTACAACCACCTCTTAAGAAGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTCGTATGTGAAATATGCAACAAGGGTTTTCAAAGAGACCAAAATCTTCAACTGCACCGAAGAGGACACAACTTGCCTTGGAAGCTAAAACAAAGAACAAGTGCAGAAATTAGAAAGAGGGTTTATGTTTGTCCTGAACCTTCATGTGTTCACCATAACCCTGCAAGAGCACTTGGTGATCTTACTGGTATCAAAAAGCACTTTTGTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATATGTGGTACAAGGGAATACAAATGTGACTGTGGAACCATCTTTTCCAGAAGAGACAGCTTCATTACTCACAGAGCATTCTGTGACGCATTAGCTGAAGAGAACAACAAAGCAAACGAAGGAGTACTATCAAATTTGCAACACCAACCAATCTCAAATCTCGTTTCCTCATTACCTTTAAACCCCATTATTAACCCTCAAATTGGTGGAACTGTATCAGAATTCAACAACCATTCAGATCACAAGCTTCCATTATCATCACCTCATGAACTCATGTCAGTAGTGCCACCAAAACCCTTCAACAACAACATATTCACTAGAAGCCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTCAGTTCAAATAATTCACTCAACAACATCTTGGAAGAAAATGGACCACTCCATTTATCTGCTGCAACTTCACCTCACATGTCAGCCACTGCATTGCTACAGAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCAGGTATCATGACGGATAAAACTACCGTTGCTACAAACATGATGGCGCCGCCGCAGTTTGGTGTAGTGCAACAACAAGGACATGCTTTCATGAACCACTACATGCAACAGCAACAACAACACTACAATAATAATTTCAATGCAAATGGGATAATAAATGGAGGAGGCGTTGGAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCGAAGATCATTGAACAAAACAATCAAACTCAAAGCATTAATAGTGTTGTTGGAGGTGGAGGAGGAGGTGCATCAAGTAATAGTAATAATGTTATGAACATTAGTGGAAGTAAGGGTGGTGGAGATGTAATGACACTGGATTTGTTGGGGATAGGAGGAGGAGGTGCACATAGTAATTTCTATGGAGGGGGTACACAACAACAACAGGCAGAAAGTGCAGCAGCAGCAGCAGCTGATGAGGTTTGGAGAAATTGGTCAACCAAGAATGGAGGATTTGAATCTTTTTCAGCAACAAGCAACATTTGA
Protein sequence

>Msa0945540

MSNITSCDSGSFSTENTREDAVKQQQTDQILGQFHSPHSHTSTNNNNNNSNGSNTDLQPPLKKKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVLSNLQHQPISNLVSSLPLNPIINPQIGGTVSEFNNHSDHKLPLSSPHELMSVVPPKPFNNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGPLHLSAATSPHMSATALLQKAAQMGATVSNNNAGIMTDKTTVATNMMAPPQFGVVQQQGHAFMNHYMQQQQQHYNNNFNANGIINGGGVGMNGVDMFNAILDQSKALSKIIEQNNQTQSINSVVGGGGGGASSNSNNVMNISGSKGGGDVMTLDLLGIGGGGAHSNFYGGGTQQQQAESAAAAAADEVWRNWSTKNGGFESFSATSNI*