Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081040 | XP_024638902.1 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081040 | sp|Q9SFF6|PAE12_ARATH | 69.378 | 418 | 123 | 4 | 1 | 416 | 1 | 415 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081040 | A0A396JTP5 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036820 | Msa0081040 | 0.916887 | 1.036077e-85 | -8.615850e-47 |
| Msa0081040 | Msa0621030 | 0.979079 | 3.458164e-147 | -8.615850e-47 |
| Msa0081040 | Msa1342770 | 0.998251 | 6.490782e-260 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081040 | MtrunA17_Chr1g0193381 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Msa0081040 | MtrunA17_Chr7g0271231 | 74.641 | 418 | 103 | 2 | 1 | 415 | 1 | 418 | 0.0 | 664 |
| Msa0081040 | MtrunA17_Chr7g0270931 | 71.925 | 374 | 105 | 0 | 42 | 415 | 41 | 414 | 0.0 | 600 |
| Msa0081040 | MtrunA17_Chr4g0069571 | 74.659 | 367 | 93 | 0 | 49 | 415 | 54 | 420 | 0.0 | 587 |
| Msa0081040 | MtrunA17_Chr1g0193761 | 69.867 | 375 | 113 | 0 | 42 | 416 | 29 | 403 | 0.0 | 585 |
| Msa0081040 | MtrunA17_Chr5g0408881 | 56.354 | 362 | 156 | 1 | 53 | 412 | 29 | 390 | 4.08e-159 | 455 |
| Msa0081040 | MtrunA17_Chr8g0369681 | 52.815 | 373 | 174 | 1 | 46 | 416 | 20 | 392 | 2.66e-157 | 449 |
| Msa0081040 | MtrunA17_Chr8g0369651 | 53.369 | 371 | 171 | 1 | 48 | 416 | 23 | 393 | 1.07e-155 | 445 |
| Msa0081040 | MtrunA17_Chr5g0418101 | 51.639 | 366 | 171 | 2 | 48 | 411 | 37 | 398 | 1.45e-146 | 422 |
| Msa0081040 | MtrunA17_Chr1g0203101 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 5.53e-146 | 421 |
| Msa0081040 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 2.85e-144 | 417 |
| Msa0081040 | MtrunA17_Chr7g0238491 | 50.535 | 374 | 173 | 4 | 51 | 415 | 55 | 425 | 2.12e-138 | 402 |
| Msa0081040 | MtrunA17_Chr1g0163701 | 60.194 | 103 | 41 | 0 | 233 | 335 | 270 | 372 | 2.00e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081040 | AT3G05910.1 | 69.378 | 418 | 123 | 4 | 1 | 416 | 1 | 415 | 0.0 | 615 |
| Msa0081040 | AT5G26670.1 | 69.212 | 419 | 123 | 4 | 1 | 416 | 1 | 416 | 0.0 | 604 |
| Msa0081040 | AT1G57590.1 | 73.171 | 369 | 99 | 0 | 48 | 416 | 75 | 443 | 0.0 | 589 |
| Msa0081040 | AT3G62060.2 | 64.878 | 410 | 137 | 2 | 7 | 415 | 15 | 418 | 0.0 | 578 |
| Msa0081040 | AT3G62060.1 | 64.720 | 411 | 138 | 2 | 7 | 416 | 15 | 419 | 0.0 | 577 |
| Msa0081040 | AT2G46930.1 | 62.954 | 413 | 146 | 2 | 4 | 416 | 11 | 416 | 0.0 | 568 |
| Msa0081040 | AT5G26670.3 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 3.24e-170 | 478 |
| Msa0081040 | AT5G26670.2 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 3.24e-170 | 478 |
| Msa0081040 | AT5G26670.4 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 3.24e-170 | 478 |
| Msa0081040 | AT4G19420.1 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 6.40e-163 | 464 |
| Msa0081040 | AT4G19420.2 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 6.40e-163 | 464 |
| Msa0081040 | AT1G09550.1 | 60.350 | 343 | 135 | 1 | 52 | 394 | 41 | 382 | 4.96e-159 | 454 |
| Msa0081040 | AT4G19420.4 | 53.000 | 400 | 151 | 2 | 53 | 415 | 25 | 424 | 4.81e-156 | 447 |
| Msa0081040 | AT5G23870.1 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 2.92e-151 | 435 |
| Msa0081040 | AT5G23870.4 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 2.92e-151 | 435 |
| Msa0081040 | AT5G23870.2 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 6.44e-151 | 435 |
| Msa0081040 | AT5G23870.3 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 9.27e-151 | 435 |
| Msa0081040 | AT3G05910.2 | 66.019 | 309 | 100 | 4 | 1 | 307 | 1 | 306 | 1.15e-147 | 422 |
| Msa0081040 | AT4G19410.1 | 51.359 | 368 | 176 | 2 | 46 | 410 | 17 | 384 | 1.86e-145 | 419 |
| Msa0081040 | AT3G09410.1 | 50.402 | 373 | 182 | 1 | 46 | 415 | 54 | 426 | 2.15e-144 | 418 |
| Msa0081040 | AT5G45280.2 | 49.457 | 368 | 183 | 2 | 46 | 410 | 17 | 384 | 1.07e-142 | 412 |
| Msa0081040 | AT4G19410.2 | 50.847 | 354 | 172 | 1 | 46 | 397 | 17 | 370 | 1.81e-137 | 404 |
| Msa0081040 | AT3G09405.1 | 49.864 | 367 | 179 | 2 | 47 | 410 | 45 | 409 | 3.33e-136 | 396 |
| Msa0081040 | AT3G09410.3 | 49.412 | 340 | 169 | 1 | 46 | 382 | 54 | 393 | 1.73e-126 | 371 |
| Msa0081040 | AT5G45280.1 | 52.055 | 292 | 138 | 1 | 43 | 332 | 14 | 305 | 3.61e-116 | 344 |
| Msa0081040 | AT3G09405.2 | 50.165 | 303 | 146 | 2 | 111 | 410 | 2 | 302 | 4.79e-112 | 331 |
| Msa0081040 | AT4G19420.3 | 58.403 | 238 | 94 | 2 | 53 | 288 | 25 | 259 | 5.11e-96 | 290 |
Find 132 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCAGGCTCTTCTTTC+TGG | -0.013953 | 1_2:-59533258 | Msa0081040:intron |
| TCAACCCACCTTGCAGAAAT+TGG | 0.177359 | 1_2:+59532263 | None:intergenic |
| TCTAGTTGGAATCGAATAAA+AGG | 0.185475 | 1_2:-59531188 | Msa0081040:three_prime_UTR |
| TTATTACAATGTATATATTT+TGG | 0.192930 | 1_2:+59531263 | None:intergenic |
| TTTGTTTCAGTGCTTCTTTC+CGG | 0.212409 | 1_2:-59532565 | Msa0081040:intron |
| TTGCTTAATATTCCAGTAAA+AGG | 0.219538 | 1_2:+59533932 | None:intergenic |
| TCTCCCTAACTACTAATTCT+TGG | 0.240653 | 1_2:+59531372 | None:intergenic |
| TAGCAGCAGCAGATTGAATA+AGG | 0.246442 | 1_2:+59534843 | None:intergenic |
| AGAAGCTTCATGAGCTTCTA+AGG | 0.265076 | 1_2:+59534910 | None:intergenic |
| GTGAACCAGAACATTTATTA+TGG | 0.270304 | 1_2:+59532290 | None:intergenic |
| CAGCTGGCTTGTTAATTTAG+AGG | 0.278550 | 1_2:-59534324 | Msa0081040:intron |
| CTAGTTTAATTGTGGTAATA+TGG | 0.292476 | 1_2:+59531140 | None:intergenic |
| TTTATTCGATTCCAACTAGA+AGG | 0.305485 | 1_2:+59531191 | None:intergenic |
| TCCTCACTAAATACTAATTA+AGG | 0.308311 | 1_2:+59535138 | None:intergenic |
| CTTCTTTCTGGATGCTCAGC+TGG | 0.328684 | 1_2:-59533246 | Msa0081040:CDS |
| CACTTCACTTTGGTAGTCCT+TGG | 0.337219 | 1_2:+59533177 | None:intergenic |
| TTAAACCATAATAAATGTTC+TGG | 0.344297 | 1_2:-59532295 | Msa0081040:CDS |
| TTCTCAAGATCAGGTCAAAA+TGG | 0.355306 | 1_2:-59532112 | Msa0081040:CDS |
| CGGCCGATCCCCACGGCAAT+TGG | 0.361858 | 1_2:-59532330 | Msa0081040:CDS |
| TAAAATCTGATACAGGATTC+AGG | 0.362095 | 1_2:-59532162 | Msa0081040:intron |
| TTCATTTCTCATCAACAATT+CGG | 0.363972 | 1_2:-59531471 | Msa0081040:three_prime_UTR |
| TTATGTATAGATCAATTAGT+TGG | 0.402375 | 1_2:-59531342 | Msa0081040:three_prime_UTR |
| TGAGTGAGACTGAAGAAGTT+TGG | 0.409862 | 1_2:+59531512 | None:intergenic |
| AATTCAGAGGACAACGCATT+TGG | 0.411794 | 1_2:-59533405 | Msa0081040:CDS |
| GTTTACCTGCCACGAGTCAT+AGG | 0.421718 | 1_2:+59532494 | None:intergenic |
| TATGATGTTTCCCTTCTAGT+TGG | 0.422993 | 1_2:-59531202 | Msa0081040:three_prime_UTR |
| TATGTATAGATCAATTAGTT+GGG | 0.425796 | 1_2:-59531341 | Msa0081040:three_prime_UTR |
| ACGTGGATCATCAAAATTCA+TGG | 0.426749 | 1_2:-59533966 | Msa0081040:CDS |
| AGATGAGCATTGATAGTGAT+TGG | 0.434460 | 1_2:-59531241 | Msa0081040:three_prime_UTR |
| AGGACAATGTATGTGTTTGC+CGG | 0.437599 | 1_2:+59535248 | None:intergenic |
| TGATAGCACATGCCACCATT+TGG | 0.437780 | 1_2:-59531547 | Msa0081040:CDS |
| GCTGACAACTCTCCTGTCAT+AGG | 0.444782 | 1_2:-59532031 | Msa0081040:CDS |
| TAACTACTAATTCTTGGAAA+AGG | 0.447014 | 1_2:+59531378 | None:intergenic |
| AGGGAGATTTAGAAAGGAAC+AGG | 0.448807 | 1_2:+59535228 | None:intergenic |
| AGGGAAGTAAGAAGAGAAGA+GGG | 0.454239 | 1_2:+59535209 | None:intergenic |
| TTTCCAAGAATTAGTAGTTA+GGG | 0.455512 | 1_2:-59531375 | Msa0081040:three_prime_UTR |
| TGGTTTATAGTAAGGAAAGA+AGG | 0.457626 | 1_2:+59535104 | None:intergenic |
| ATTCAATCTGCTGCTGCTAA+AGG | 0.458885 | 1_2:-59534839 | Msa0081040:CDS |
| ACTTCACTTTGGTAGTCCTT+GGG | 0.459019 | 1_2:+59533178 | None:intergenic |
| TACCTTATCTTCACTATCCC+CGG | 0.462721 | 1_2:+59533726 | None:intergenic |
| ACGCCAATTGCCGTGGGGAT+CGG | 0.463148 | 1_2:+59532327 | None:intergenic |
| TGCGATAGACGCAAGTTCTA+CGG | 0.464930 | 1_2:+59533999 | None:intergenic |
| ATGAAGGAGCTAAGCTTGAC+TGG | 0.465960 | 1_2:+59532353 | None:intergenic |
| TTGCTCTGGCTGTTGGAGAC+TGG | 0.473165 | 1_2:-59531617 | Msa0081040:CDS |
| CAACGGTGTTGTCACCCTAC+AGG | 0.473602 | 1_2:-59532976 | Msa0081040:intron |
| GTGAGAGGCTTCTCAAGATC+AGG | 0.473932 | 1_2:-59532121 | Msa0081040:CDS |
| TTAATATTAATAAAGAATGA+AGG | 0.474822 | 1_2:+59535178 | None:intergenic |
| ACGCATTTGGTTGGCTGCAG+TGG | 0.483484 | 1_2:-59533392 | Msa0081040:CDS |
| ATCACTAAGGCACTTCACTT+TGG | 0.485245 | 1_2:+59533167 | None:intergenic |
| GTGAAGTGCCTTAGTGATGC+TGG | 0.487536 | 1_2:-59533162 | Msa0081040:CDS |
| TAGCTGGTGGGCATACCCTC+AGG | 0.487893 | 1_2:-59533007 | Msa0081040:CDS |
| GTGGAGGATTTGATGTCAAA+AGG | 0.488280 | 1_2:-59533373 | Msa0081040:CDS |
| ACTAGAAGGGAAACATCATA+TGG | 0.489575 | 1_2:+59531205 | None:intergenic |
| ACGGATCCGGTGCAAACAGC+TGG | 0.489904 | 1_2:-59534340 | Msa0081040:CDS |
| CTCACCTTGTTTCCTATGAC+AGG | 0.490925 | 1_2:+59532019 | None:intergenic |
| CCGTGGGGATCGGCCGATGA+AGG | 0.493491 | 1_2:+59532337 | None:intergenic |
| CTAGTTGGAATCGAATAAAA+GGG | 0.493956 | 1_2:-59531187 | Msa0081040:three_prime_UTR |
| TTTGATCGCGGATACGGATC+CGG | 0.495604 | 1_2:-59534353 | Msa0081040:CDS |
| TACCGGGGATAGTGAAGATA+AGG | 0.496636 | 1_2:-59533728 | Msa0081040:intron |
| ACTCATCTCACTCACTCGCT+TGG | 0.503810 | 1_2:-59531494 | Msa0081040:three_prime_UTR |
| CAGAGGACAACGCATTTGGT+TGG | 0.504022 | 1_2:-59533401 | Msa0081040:CDS |
| TAGGCAATTGCTCTGGCTGT+TGG | 0.506232 | 1_2:-59531624 | Msa0081040:CDS |
| GGACAATGTATGTGTTTGCC+GGG | 0.508933 | 1_2:+59535249 | None:intergenic |
| TTCACTATCCCCGGTAAAAG+AGG | 0.509811 | 1_2:+59533735 | None:intergenic |
| GAGAAGAGGGAGATTTAGAA+AGG | 0.509858 | 1_2:+59535222 | None:intergenic |
| CAGTATTAAGAATGAATAGC+GGG | 0.512415 | 1_2:+59532517 | None:intergenic |
| ACTTGTGGCTCAGCCTCACA+TGG | 0.512424 | 1_2:-59534876 | Msa0081040:CDS |
| GGTTTATAGTAAGGAAAGAA+GGG | 0.513567 | 1_2:+59535105 | None:intergenic |
| AGCAGCAGCAGATTGAATAA+GGG | 0.515953 | 1_2:+59534844 | None:intergenic |
| GAGGGAAGTAAGAAGAGAAG+AGG | 0.516418 | 1_2:+59535208 | None:intergenic |
| ATGTGTCTTGCCTCTCAGAT+TGG | 0.519666 | 1_2:+59532059 | None:intergenic |
| ATACTAGCAATCAAGTTCTC+CGG | 0.520958 | 1_2:+59532546 | None:intergenic |
| CATTTGGTTGGCTGCAGTGG+AGG | 0.521238 | 1_2:-59533389 | Msa0081040:CDS |
| AAGAATGAAGGGTAAGAAGA+GGG | 0.523824 | 1_2:+59535190 | None:intergenic |
| TTACACTGCGATGAATTTCG+AGG | 0.526633 | 1_2:-59533207 | Msa0081040:CDS |
| GAAATAACCCAGCATCACTA+AGG | 0.526893 | 1_2:+59533154 | None:intergenic |
| CCGCGATCAAAATGATAAGC+AGG | 0.530290 | 1_2:+59534365 | None:intergenic |
| TTACAATGCAAACCCAGAAA+AGG | 0.531063 | 1_2:+59535002 | None:intergenic |
| CTTTCTGGATGCTCAGCTGG+TGG | 0.531189 | 1_2:-59533243 | Msa0081040:CDS |
| TGCAATCACGCCAATTGCCG+TGG | 0.532481 | 1_2:+59532320 | None:intergenic |
| AACAAGCCAGCTGTTTGCAC+CGG | 0.541065 | 1_2:+59534334 | None:intergenic |
| TACTGCCTATGACTCGTGGC+AGG | 0.541796 | 1_2:-59532499 | Msa0081040:intron |
| TGGCTCATCTGAAAACCAAA+TGG | 0.544159 | 1_2:+59531532 | None:intergenic |
| AATAATGCTCAAGAGAATCC+AGG | 0.544827 | 1_2:-59533911 | Msa0081040:intron |
| AAAGAATGAAGGGTAAGAAG+AGG | 0.552469 | 1_2:+59535189 | None:intergenic |
| CTCTCCTGTCATAGGAAACA+AGG | 0.552688 | 1_2:-59532023 | Msa0081040:intron |
| TGCATTTGCATCAACCCAGT+TGG | 0.557817 | 1_2:+59534964 | None:intergenic |
| TCTGCTGCTGCTAAAGGAGC+TGG | 0.564131 | 1_2:-59534833 | Msa0081040:intron |
| GCAATCACGCCAATTGCCGT+GGG | 0.571050 | 1_2:+59532321 | None:intergenic |
| AATTTCGAGGTCATTTCCCA+AGG | 0.572709 | 1_2:-59533194 | Msa0081040:CDS |
| GTGGCTCAGCCTCACATGGT+TGG | 0.572897 | 1_2:-59534872 | Msa0081040:CDS |
| TTATTCGATTCCAACTAGAA+GGG | 0.575258 | 1_2:+59531192 | None:intergenic |
| TAATATTAATAAAGAATGAA+GGG | 0.575654 | 1_2:+59535179 | None:intergenic |
| ATATCAATTATTACCGAAGT+GGG | 0.578018 | 1_2:+59532701 | None:intergenic |
| GAATACAGTGTTGATGTAGC+TGG | 0.581901 | 1_2:-59533023 | Msa0081040:intron |
| CAATATGTAGGCAATTGCTC+TGG | 0.584344 | 1_2:-59531631 | Msa0081040:intron |
| GTGTCGGGCTAGTTTAATTG+TGG | 0.585821 | 1_2:+59531132 | None:intergenic |
| GAAATACTGTGGCAGGGAGG+TGG | 0.587258 | 1_2:-59534034 | Msa0081040:intron |
| GATATCAATTATTACCGAAG+TGG | 0.589141 | 1_2:+59532700 | None:intergenic |
| GAAGTCCAGAAGATAAAATG+AGG | 0.591146 | 1_2:+59531162 | None:intergenic |
| TCCTTAATTAGTATTTAGTG+AGG | 0.596583 | 1_2:-59535139 | Msa0081040:five_prime_UTR |
| CATGTGCTATCACAAGGGTA+AGG | 0.597112 | 1_2:+59531558 | None:intergenic |
| CCTTCATCGGCCGATCCCCA+CGG | 0.597346 | 1_2:-59532337 | Msa0081040:CDS |
| GTGAAAATTCGTTACTGTGA+TGG | 0.602298 | 1_2:-59533760 | Msa0081040:CDS |
| CAATGTCCTTAACAGCGGCT+CGG | 0.605068 | 1_2:+59531586 | None:intergenic |
| TACTGTGGCAGGGAGGTGGT+TGG | 0.606796 | 1_2:-59534030 | Msa0081040:intron |
| TGGTGGCATGTGCTATCACA+AGG | 0.607600 | 1_2:+59531552 | None:intergenic |
| AATCTGAGAGGCAAGACACA+TGG | 0.627362 | 1_2:-59532057 | Msa0081040:CDS |
| TAATCATCTTGATCCCACTT+CGG | 0.628050 | 1_2:-59532714 | Msa0081040:intron |
| GTCAAGCTTAGCTCCTTCAT+CGG | 0.630234 | 1_2:-59532350 | Msa0081040:CDS |
| TCACAAATCCAATTTCTGCA+AGG | 0.632203 | 1_2:-59532271 | Msa0081040:intron |
| TATCGCAAGACCACACGACG+TGG | 0.635251 | 1_2:-59533983 | Msa0081040:CDS |
| TGAAGTGCCTTAGTGATGCT+GGG | 0.640149 | 1_2:-59533161 | Msa0081040:CDS |
| ATGTATGTGTACAACCTGCT+TGG | 0.643481 | 1_2:+59533339 | None:intergenic |
| AGGGTGATTCCAACCATGTG+AGG | 0.644329 | 1_2:+59534863 | None:intergenic |
| TTAATACTGCCTATGACTCG+TGG | 0.644352 | 1_2:-59532503 | Msa0081040:CDS |
| GCTGCGCAGTTGCAATTCAG+AGG | 0.649968 | 1_2:-59533418 | Msa0081040:CDS |
| TTGCTCACTGCCAATCTGAG+AGG | 0.650325 | 1_2:-59532069 | Msa0081040:CDS |
| CTCATCTGAAAACCAAATGG+TGG | 0.655239 | 1_2:+59531535 | None:intergenic |
| TTAGAAAGAAACAATAACCA+TGG | 0.656885 | 1_2:-59535029 | Msa0081040:exon |
| GTGAAAGAAACAAAACACAA+AGG | 0.660481 | 1_2:+59535070 | None:intergenic |
| AGATGATTAGTACAAACGCG+TGG | 0.666672 | 1_2:+59532728 | None:intergenic |
| TACAGGATTCAGGAATCACA+TGG | 0.672670 | 1_2:-59532152 | Msa0081040:intron |
| GCAGTATTAAGAATGAATAG+CGG | 0.673265 | 1_2:+59532516 | None:intergenic |
| TACAGTGTTGATGTAGCTGG+TGG | 0.678330 | 1_2:-59533020 | Msa0081040:intron |
| CACATGGTGAATGTTGTGAG+AGG | 0.686276 | 1_2:-59532136 | Msa0081040:CDS |
| ACAATCAATGTCCTTAACAG+CGG | 0.695254 | 1_2:+59531581 | None:intergenic |
| AACCCAGAAAAGGTTCACCA+TGG | 0.700911 | 1_2:+59535012 | None:intergenic |
| CAATCACGCCAATTGCCGTG+GGG | 0.703508 | 1_2:+59532322 | None:intergenic |
| ACAGTGTTGATGTAGCTGGT+GGG | 0.721028 | 1_2:-59533019 | Msa0081040:intron |
| AGTATTAAGAATGAATAGCG+GGG | 0.730636 | 1_2:+59532518 | None:intergenic |
| GGTGGCATGTGCTATCACAA+GGG | 0.739938 | 1_2:+59531553 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTAATAAAGAATGAA+GGG | + | chr1_2:59531135-59531154 | None:intergenic | 10.0% |
| !! | TTAATATTAATAAAGAATGA+AGG | + | chr1_2:59531136-59531155 | None:intergenic | 10.0% |
| !!! | ATACTTAATTAATTTGTTTT+TGG | - | chr1_2:59531900-59531919 | Msa0081040:intron | 10.0% |
| !! | ATCATAAAATATGATTTATT+CGG | + | chr1_2:59533872-59533891 | None:intergenic | 10.0% |
| !!! | TTATTACAATGTATATATTT+TGG | + | chr1_2:59535051-59535070 | None:intergenic | 10.0% |
| !!! | AAAATTTTTGGTTTATAGTA+AGG | + | chr1_2:59531218-59531237 | None:intergenic | 15.0% |
| !!! | AACATTTTTTATAACAAAGA+AGG | + | chr1_2:59531520-59531539 | None:intergenic | 15.0% |
| !!! | AACAATTAGGAATTAATTTT+AGG | + | chr1_2:59533260-59533279 | None:intergenic | 15.0% |
| !! | AGGTTTAGTTAAAATATTAT+AGG | - | chr1_2:59534333-59534352 | Msa0081040:CDS | 15.0% |
| !!! | TGAGTTAAAGATTTCTTTTT+TGG | + | chr1_2:59531839-59531858 | None:intergenic | 20.0% |
| !! | TCAATATGTTCATATTGTAA+AGG | - | chr1_2:59532074-59532093 | Msa0081040:CDS | 20.0% |
| !! | TAAAAAAATCTGCAATCATA+CGG | + | chr1_2:59532520-59532539 | None:intergenic | 20.0% |
| !! | AAAACCTTAATGAATAAAGT+TGG | + | chr1_2:59532634-59532653 | None:intergenic | 20.0% |
| !!! | TTATTCATTAAGGTTTTCAT+AGG | - | chr1_2:59532637-59532656 | Msa0081040:intron | 20.0% |
| !! | AAATCATGTGATAATAATGA+TGG | + | chr1_2:59533232-59533251 | None:intergenic | 20.0% |
| !! | AGGAAAAAGATATTACTAAA+AGG | + | chr1_2:59533727-59533746 | None:intergenic | 20.0% |
| !!! | TAAACATCTTATTTCTAACT+CGG | - | chr1_2:59533835-59533854 | Msa0081040:intron | 20.0% |
| !!! | AAATCATATTTTATGATCTG+TGG | - | chr1_2:59533875-59533894 | Msa0081040:intron | 20.0% |
| !! | TTAAACCATAATAAATGTTC+TGG | - | chr1_2:59534016-59534035 | Msa0081040:CDS | 20.0% |
| !! | ATTTAACTAAAATCTGATAC+AGG | - | chr1_2:59534142-59534161 | Msa0081040:intron | 20.0% |
| !! | TTATGTATAGATCAATTAGT+TGG | - | chr1_2:59534969-59534988 | Msa0081040:CDS | 20.0% |
| !! | TATGTATAGATCAATTAGTT+GGG | - | chr1_2:59534970-59534989 | Msa0081040:CDS | 20.0% |
| !!! | AAGCTTTGTAAAAATCAAAA+GGG | + | chr1_2:59535010-59535029 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTTACAAAGCTT+GGG | - | chr1_2:59535010-59535029 | Msa0081040:CDS | 20.0% |
| ! | TCCTTAATTAGTATTTAGTG+AGG | - | chr1_2:59531172-59531191 | Msa0081040:three_prime_UTR | 25.0% |
| ! | TCCTCACTAAATACTAATTA+AGG | + | chr1_2:59531176-59531195 | None:intergenic | 25.0% |
| ! | TTAGAAAGAAACAATAACCA+TGG | - | chr1_2:59531282-59531301 | Msa0081040:three_prime_UTR | 25.0% |
| ! | ATAACAAAGAAGGTTAGAAA+TGG | + | chr1_2:59531510-59531529 | None:intergenic | 25.0% |
| ! | ATATATAACATGGCAAATTG+GGG | + | chr1_2:59531760-59531779 | None:intergenic | 25.0% |
| ! | CATATATAACATGGCAAATT+GGG | + | chr1_2:59531761-59531780 | None:intergenic | 25.0% |
| ! | ACATATATAACATGGCAAAT+TGG | + | chr1_2:59531762-59531781 | None:intergenic | 25.0% |
| ! | TCACATTCACATATATAACA+TGG | + | chr1_2:59531770-59531789 | None:intergenic | 25.0% |
| !!! | TAAATCTGTAGCTTTTGATT+TGG | - | chr1_2:59531865-59531884 | Msa0081040:intron | 25.0% |
| !!! | TTTCTAGTTAGAAGTTTTGT+TGG | - | chr1_2:59532130-59532149 | Msa0081040:CDS | 25.0% |
| !!! | TTCTAGTTAGAAGTTTTGTT+GGG | - | chr1_2:59532131-59532150 | Msa0081040:CDS | 25.0% |
| ! | GATATTTAAGTGAAATACTG+TGG | - | chr1_2:59532266-59532285 | Msa0081040:intron | 25.0% |
| ! | TTGCTTAATATTCCAGTAAA+AGG | + | chr1_2:59532382-59532401 | None:intergenic | 25.0% |
| ! | TACTCAAATTATGCTGAAAA+AGG | - | chr1_2:59532465-59532484 | Msa0081040:intron | 25.0% |
| !!! | TGATTGCAGATTTTTTTAAC+TGG | - | chr1_2:59532522-59532541 | Msa0081040:CDS | 25.0% |
| ! | ATAGCCAACTTTATTCATTA+AGG | - | chr1_2:59532627-59532646 | Msa0081040:intron | 25.0% |
| ! | TGTTTGTTTGATTGAAAGTT+AGG | - | chr1_2:59532709-59532728 | Msa0081040:intron | 25.0% |
| ! | TTAGTCGATCTATTTAATGT+AGG | - | chr1_2:59532826-59532845 | Msa0081040:intron | 25.0% |
| ! | TAGTCGATCTATTTAATGTA+GGG | - | chr1_2:59532827-59532846 | Msa0081040:intron | 25.0% |
| ! | ACAGATAATATTCAGAAATC+AGG | + | chr1_2:59532865-59532884 | None:intergenic | 25.0% |
| ! | TGAATATTATCTGTTGACAT+AGG | - | chr1_2:59532871-59532890 | Msa0081040:intron | 25.0% |
| ! | TAGAATGAAATACTGAAGTT+AGG | + | chr1_2:59533197-59533216 | None:intergenic | 25.0% |
| ! | CACATGCTAAATAGTTTATA+TGG | - | chr1_2:59533456-59533475 | Msa0081040:intron | 25.0% |
| ! | AGTTTATATGGCTTAAAACT+TGG | - | chr1_2:59533468-59533487 | Msa0081040:intron | 25.0% |
| ! | CAATCATCATGCTTTATATA+AGG | + | chr1_2:59533515-59533534 | None:intergenic | 25.0% |
| ! | ATATCAATTATTACCGAAGT+GGG | + | chr1_2:59533613-59533632 | None:intergenic | 25.0% |
| ! | GTTTCATTTGAATGAATTTG+AGG | - | chr1_2:59533661-59533680 | Msa0081040:intron | 25.0% |
| ! | AATATGATTTATTCGGAGTT+TGG | + | chr1_2:59533865-59533884 | None:intergenic | 25.0% |
| !!! | ATTTTAACTAAACCTGCATA+GGG | + | chr1_2:59534328-59534347 | None:intergenic | 25.0% |
| !!! | TATTTTAACTAAACCTGCAT+AGG | + | chr1_2:59534329-59534348 | None:intergenic | 25.0% |
| ! | GAATAGTTTATAGCAAAAAC+AGG | + | chr1_2:59534443-59534462 | None:intergenic | 25.0% |
| !! | TTTGCTATAAACTATTCACA+TGG | - | chr1_2:59534446-59534465 | Msa0081040:intron | 25.0% |
| ! | TTCACATGGAGAAAAATTAT+AGG | - | chr1_2:59534460-59534479 | Msa0081040:intron | 25.0% |
| ! | TACATATTGTCAATGCATAA+GGG | + | chr1_2:59534669-59534688 | None:intergenic | 25.0% |
| ! | TTCATTTCTCATCAACAATT+CGG | - | chr1_2:59534840-59534859 | Msa0081040:CDS | 25.0% |
| ! | TAACTACTAATTCTTGGAAA+AGG | + | chr1_2:59534936-59534955 | None:intergenic | 25.0% |
| !! | TTTTCCAAGAATTAGTAGTT+AGG | - | chr1_2:59534935-59534954 | Msa0081040:CDS | 25.0% |
| ! | TTTCCAAGAATTAGTAGTTA+GGG | - | chr1_2:59534936-59534955 | Msa0081040:CDS | 25.0% |
| !! | CAAGCTTTGTAAAAATCAAA+AGG | + | chr1_2:59535011-59535030 | None:intergenic | 25.0% |
| !!! | CTTTTGATTTTTACAAAGCT+TGG | - | chr1_2:59535009-59535028 | Msa0081040:CDS | 25.0% |
| ! | CTAGTTTAATTGTGGTAATA+TGG | + | chr1_2:59535174-59535193 | None:intergenic | 25.0% |
| GGTTTATAGTAAGGAAAGAA+GGG | + | chr1_2:59531209-59531228 | None:intergenic | 30.0% | |
| TGGTTTATAGTAAGGAAAGA+AGG | + | chr1_2:59531210-59531229 | None:intergenic | 30.0% | |
| !! | ACACAAAGGTGCAAAATTTT+TGG | + | chr1_2:59531230-59531249 | None:intergenic | 30.0% |
| GTGAAAGAAACAAAACACAA+AGG | + | chr1_2:59531244-59531263 | None:intergenic | 30.0% | |
| ! | TTCTTCTTTTTCTTCACTTG+TGG | - | chr1_2:59531420-59531439 | Msa0081040:three_prime_UTR | 30.0% |
| TTTCAGCAACAAAACTTCAA+AGG | + | chr1_2:59531712-59531731 | None:intergenic | 30.0% | |
| TATATAACATGGCAAATTGG+GGG | + | chr1_2:59531759-59531778 | None:intergenic | 30.0% | |
| GATTTACCAATAGAAAGACT+TGG | + | chr1_2:59532103-59532122 | None:intergenic | 30.0% | |
| !!! | TCTAGTTAGAAGTTTTGTTG+GGG | - | chr1_2:59532132-59532151 | Msa0081040:CDS | 30.0% |
| ! | GAAAAAGTGATACCTTTTAC+TGG | - | chr1_2:59532367-59532386 | Msa0081040:intron | 30.0% |
| ! | AAAGGATTTGCTTAACTGTT+TGG | - | chr1_2:59532483-59532502 | Msa0081040:intron | 30.0% |
| AACTGTATGAATGATGCATA+AGG | - | chr1_2:59532760-59532779 | Msa0081040:intron | 30.0% | |
| ! | TTTACAACTTTGTTTCCTTC+AGG | - | chr1_2:59533040-59533059 | Msa0081040:intron | 30.0% |
| !! | TGTGATAATAATGATGGACA+TGG | + | chr1_2:59533226-59533245 | None:intergenic | 30.0% |
| ! | TTCTTGAGATCATTCTGTTT+TGG | - | chr1_2:59533372-59533391 | Msa0081040:CDS | 30.0% |
| !! | TAAAACTTGGTCATTTTGCA+TGG | - | chr1_2:59533481-59533500 | Msa0081040:intron | 30.0% |
| !! | TATATTTTTGCACTCATTGC+AGG | - | chr1_2:59533543-59533562 | Msa0081040:intron | 30.0% |
| !! | ATATTTTTGCACTCATTGCA+GGG | - | chr1_2:59533544-59533563 | Msa0081040:intron | 30.0% |
| GATATCAATTATTACCGAAG+TGG | + | chr1_2:59533614-59533633 | None:intergenic | 30.0% | |
| CTCTGAACAATAATTAACGA+CGG | + | chr1_2:59533700-59533719 | None:intergenic | 30.0% | |
| AGTATTAAGAATGAATAGCG+GGG | + | chr1_2:59533796-59533815 | None:intergenic | 30.0% | |
| CAGTATTAAGAATGAATAGC+GGG | + | chr1_2:59533797-59533816 | None:intergenic | 30.0% | |
| GCAGTATTAAGAATGAATAG+CGG | + | chr1_2:59533798-59533817 | None:intergenic | 30.0% | |
| GTGAACCAGAACATTTATTA+TGG | + | chr1_2:59534024-59534043 | None:intergenic | 30.0% | |
| TAAAATCTGATACAGGATTC+AGG | - | chr1_2:59534149-59534168 | Msa0081040:intron | 30.0% | |
| AGCAGTGTCATGAAAAATAA+TGG | + | chr1_2:59534548-59534567 | None:intergenic | 30.0% | |
| CTACATATTGTCAATGCATA+AGG | + | chr1_2:59534670-59534689 | None:intergenic | 30.0% | |
| ! | CTTATGCATTGACAATATGT+AGG | - | chr1_2:59534668-59534687 | Msa0081040:intron | 30.0% |
| TTATTCGATTCCAACTAGAA+GGG | + | chr1_2:59535122-59535141 | None:intergenic | 30.0% | |
| TTTATTCGATTCCAACTAGA+AGG | + | chr1_2:59535123-59535142 | None:intergenic | 30.0% | |
| TCTAGTTGGAATCGAATAAA+AGG | - | chr1_2:59535123-59535142 | Msa0081040:five_prime_UTR | 30.0% | |
| CTAGTTGGAATCGAATAAAA+GGG | - | chr1_2:59535124-59535143 | Msa0081040:five_prime_UTR | 30.0% | |
| TCTACAAAAATTCGAAGTGT+CGG | + | chr1_2:59535198-59535217 | None:intergenic | 30.0% | |
| AAGAATGAAGGGTAAGAAGA+GGG | + | chr1_2:59531124-59531143 | None:intergenic | 35.0% | |
| AAAGAATGAAGGGTAAGAAG+AGG | + | chr1_2:59531125-59531144 | None:intergenic | 35.0% | |
| TTACAATGCAAACCCAGAAA+AGG | + | chr1_2:59531312-59531331 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTTGGCAGTCTGTT+TGG | - | chr1_2:59531912-59531931 | Msa0081040:intron | 35.0% |
| !! | TATCATTTTGATCGCGGATA+CGG | - | chr1_2:59531952-59531971 | Msa0081040:intron | 35.0% |
| AGGATACCAAGTCTTTCTAT+TGG | - | chr1_2:59532094-59532113 | Msa0081040:CDS | 35.0% | |
| TTTAAGTGAAATACTGTGGC+AGG | - | chr1_2:59532270-59532289 | Msa0081040:intron | 35.0% | |
| TTAAGTGAAATACTGTGGCA+GGG | - | chr1_2:59532271-59532290 | Msa0081040:intron | 35.0% | |
| ACGTGGATCATCAAAATTCA+TGG | - | chr1_2:59532345-59532364 | Msa0081040:CDS | 35.0% | |
| AATAATGCTCAAGAGAATCC+AGG | - | chr1_2:59532400-59532419 | Msa0081040:intron | 35.0% | |
| GTTTCAGTTGAATGAAAACC+TGG | + | chr1_2:59532421-59532440 | None:intergenic | 35.0% | |
| GTGAAAATTCGTTACTGTGA+TGG | - | chr1_2:59532551-59532570 | Msa0081040:CDS | 35.0% | |
| TATTCAGGGGGAAAACAATT+AGG | + | chr1_2:59533273-59533292 | None:intergenic | 35.0% | |
| TACATCAACACTGTATTCAG+GGG | + | chr1_2:59533286-59533305 | None:intergenic | 35.0% | |
| CTACATCAACACTGTATTCA+GGG | + | chr1_2:59533287-59533306 | None:intergenic | 35.0% | |
| !!! | ACCCTCAGGAATTTTTTCAA+CGG | - | chr1_2:59533318-59533337 | Msa0081040:intron | 35.0% |
| ACCGTTGAAAAAATTCCTGA+GGG | + | chr1_2:59533322-59533341 | None:intergenic | 35.0% | |
| ! | AAAAAAGTGCAGTACCTGTA+GGG | + | chr1_2:59533352-59533371 | None:intergenic | 35.0% |
| ! | AAAAAAAGTGCAGTACCTGT+AGG | + | chr1_2:59533353-59533372 | None:intergenic | 35.0% |
| TCAAGTGAAAGAAAGATCCA+TGG | + | chr1_2:59533398-59533417 | None:intergenic | 35.0% | |
| TAATCATCTTGATCCCACTT+CGG | - | chr1_2:59533597-59533616 | Msa0081040:intron | 35.0% | |
| TTTGTTTCAGTGCTTCTTTC+CGG | - | chr1_2:59533746-59533765 | Msa0081040:CDS | 35.0% | |
| ATACTAGCAATCAAGTTCTC+CGG | + | chr1_2:59533768-59533787 | None:intergenic | 35.0% | |
| TCACAAATCCAATTTCTGCA+AGG | - | chr1_2:59534040-59534059 | Msa0081040:intron | 35.0% | |
| AAATCCAATTTCTGCAAGGT+GGG | - | chr1_2:59534044-59534063 | Msa0081040:intron | 35.0% | |
| TTCTCAAGATCAGGTCAAAA+TGG | - | chr1_2:59534199-59534218 | Msa0081040:intron | 35.0% | |
| AATATTATAGGTTTCCGTGC+TGG | - | chr1_2:59534345-59534364 | Msa0081040:CDS | 35.0% | |
| ! | AAATAATGGAATCGTCACTG+CGG | + | chr1_2:59534534-59534553 | None:intergenic | 35.0% |
| ACAATCAATGTCCTTAACAG+CGG | + | chr1_2:59534733-59534752 | None:intergenic | 35.0% | |
| TCTCCCTAACTACTAATTCT+TGG | + | chr1_2:59534942-59534961 | None:intergenic | 35.0% | |
| ! | ATTTTTACAAAGCTTGGGAG+AGG | - | chr1_2:59535015-59535034 | Msa0081040:exon | 35.0% |
| !! | AGATGAGCATTGATAGTGAT+TGG | - | chr1_2:59535070-59535089 | Msa0081040:five_prime_UTR | 35.0% |
| ACTAGAAGGGAAACATCATA+TGG | + | chr1_2:59535109-59535128 | None:intergenic | 35.0% | |
| TATGATGTTTCCCTTCTAGT+TGG | - | chr1_2:59535109-59535128 | Msa0081040:five_prime_UTR | 35.0% | |
| GAAGTCCAGAAGATAAAATG+AGG | + | chr1_2:59535152-59535171 | None:intergenic | 35.0% | |
| ! | CTACAAAAATTCGAAGTGTC+GGG | + | chr1_2:59535197-59535216 | None:intergenic | 35.0% |
| AGGGAGATTTAGAAAGGAAC+AGG | + | chr1_2:59531086-59531105 | None:intergenic | 40.0% | |
| GAGAAGAGGGAGATTTAGAA+AGG | + | chr1_2:59531092-59531111 | None:intergenic | 40.0% | |
| AGGGAAGTAAGAAGAGAAGA+GGG | + | chr1_2:59531105-59531124 | None:intergenic | 40.0% | |
| ! | TAACCATGGTGAACCTTTTC+TGG | - | chr1_2:59531296-59531315 | Msa0081040:three_prime_UTR | 40.0% |
| ! | AACCATGGTGAACCTTTTCT+GGG | - | chr1_2:59531297-59531316 | Msa0081040:three_prime_UTR | 40.0% |
| !! | TAGCACTTGTTTTCACCAAC+TGG | - | chr1_2:59531332-59531351 | Msa0081040:three_prime_UTR | 40.0% |
| !! | AGCACTTGTTTTCACCAACT+GGG | - | chr1_2:59531333-59531352 | Msa0081040:three_prime_UTR | 40.0% |
| AGAAGCTTCATGAGCTTCTA+AGG | + | chr1_2:59531404-59531423 | None:intergenic | 40.0% | |
| AGCAGCAGCAGATTGAATAA+GGG | + | chr1_2:59531470-59531489 | None:intergenic | 40.0% | |
| TAGCAGCAGCAGATTGAATA+AGG | + | chr1_2:59531471-59531490 | None:intergenic | 40.0% | |
| ATTCAATCTGCTGCTGCTAA+AGG | - | chr1_2:59531472-59531491 | Msa0081040:three_prime_UTR | 40.0% | |
| !! | TTGACCAACTCAGCTTTGTT+TGG | - | chr1_2:59531804-59531823 | Msa0081040:intron | 40.0% |
| !! | TTTTTGGCAGTCTGTTTGGA+TGG | - | chr1_2:59531916-59531935 | Msa0081040:intron | 40.0% |
| !! | CCTGCTTATCATTTTGATCG+CGG | - | chr1_2:59531946-59531965 | Msa0081040:intron | 40.0% |
| !! | CAGCTGGCTTGTTAATTTAG+AGG | - | chr1_2:59531987-59532006 | Msa0081040:intron | 40.0% |
| ! | TATTCCCAATGCTACTTCCT+TGG | - | chr1_2:59532221-59532240 | Msa0081040:intron | 40.0% |
| TACCTTATCTTCACTATCCC+CGG | + | chr1_2:59532588-59532607 | None:intergenic | 40.0% | |
| ACTACATCTAACACTAGCAG+AGG | + | chr1_2:59532668-59532687 | None:intergenic | 40.0% | |
| AATTCAGAGGACAACGCATT+TGG | - | chr1_2:59532906-59532925 | Msa0081040:intron | 40.0% | |
| GTGGAGGATTTGATGTCAAA+AGG | - | chr1_2:59532938-59532957 | Msa0081040:intron | 40.0% | |
| ATGTATGTGTACAACCTGCT+TGG | + | chr1_2:59532975-59532994 | None:intergenic | 40.0% | |
| TTACACTGCGATGAATTTCG+AGG | - | chr1_2:59533104-59533123 | Msa0081040:intron | 40.0% | |
| AATTTCGAGGTCATTTCCCA+AGG | - | chr1_2:59533117-59533136 | Msa0081040:intron | 40.0% | |
| ! | ACTTCACTTTGGTAGTCCTT+GGG | + | chr1_2:59533136-59533155 | None:intergenic | 40.0% |
| ! | ATCACTAAGGCACTTCACTT+TGG | + | chr1_2:59533147-59533166 | None:intergenic | 40.0% |
| GAAATAACCCAGCATCACTA+AGG | + | chr1_2:59533160-59533179 | None:intergenic | 40.0% | |
| ACATCAACACTGTATTCAGG+GGG | + | chr1_2:59533285-59533304 | None:intergenic | 40.0% | |
| GCTACATCAACACTGTATTC+AGG | + | chr1_2:59533288-59533307 | None:intergenic | 40.0% | |
| !! | GAATACAGTGTTGATGTAGC+TGG | - | chr1_2:59533288-59533307 | Msa0081040:intron | 40.0% |
| CACCGTTGAAAAAATTCCTG+AGG | + | chr1_2:59533323-59533342 | None:intergenic | 40.0% | |
| !!! | AGATCATTCTGTTTTGGCCA+TGG | - | chr1_2:59533378-59533397 | Msa0081040:CDS | 40.0% |
| AGATGATTAGTACAAACGCG+TGG | + | chr1_2:59533586-59533605 | None:intergenic | 40.0% | |
| ! | ATAATTAACGACGGAGCACT+TGG | + | chr1_2:59533691-59533710 | None:intergenic | 40.0% |
| !! | GGAAAGAAGCACTGAAACAA+AGG | + | chr1_2:59533747-59533766 | None:intergenic | 40.0% |
| TTAATACTGCCTATGACTCG+TGG | - | chr1_2:59533808-59533827 | Msa0081040:intron | 40.0% | |
| CAAATCCAATTTCTGCAAGG+TGG | - | chr1_2:59534043-59534062 | Msa0081040:intron | 40.0% | |
| TACAGGATTCAGGAATCACA+TGG | - | chr1_2:59534159-59534178 | Msa0081040:intron | 40.0% | |
| AGTTTCACATATCCCTATGC+AGG | - | chr1_2:59534313-59534332 | Msa0081040:intron | 40.0% | |
| AATATAACCGCATACCAGCA+CGG | + | chr1_2:59534362-59534381 | None:intergenic | 40.0% | |
| CAATATGTAGGCAATTGCTC+TGG | - | chr1_2:59534680-59534699 | Msa0081040:intron | 40.0% | |
| CTCATCTGAAAACCAAATGG+TGG | + | chr1_2:59534779-59534798 | None:intergenic | 40.0% | |
| TGGCTCATCTGAAAACCAAA+TGG | + | chr1_2:59534782-59534801 | None:intergenic | 40.0% | |
| TGAGTGAGACTGAAGAAGTT+TGG | + | chr1_2:59534802-59534821 | None:intergenic | 40.0% | |
| ! | GGGTTCCTCATTTTATCTTC+TGG | - | chr1_2:59535144-59535163 | Msa0081040:five_prime_UTR | 40.0% |
| GAGGGAAGTAAGAAGAGAAG+AGG | + | chr1_2:59531106-59531125 | None:intergenic | 45.0% | |
| AACCCAGAAAAGGTTCACCA+TGG | + | chr1_2:59531302-59531321 | None:intergenic | 45.0% | |
| TGCATTTGCATCAACCCAGT+TGG | + | chr1_2:59531350-59531369 | None:intergenic | 45.0% | |
| ACAGCCAAACAAAGCTGAGT+TGG | + | chr1_2:59531811-59531830 | None:intergenic | 45.0% | |
| CCGCGATCAAAATGATAAGC+AGG | + | chr1_2:59531949-59531968 | None:intergenic | 45.0% | |
| !!! | GGGGACACACTTTTTTGTGA+AGG | - | chr1_2:59532151-59532170 | Msa0081040:intron | 45.0% |
| ATGTTTGTATAGCACCGCCA+AGG | + | chr1_2:59532241-59532260 | None:intergenic | 45.0% | |
| TGCGATAGACGCAAGTTCTA+CGG | + | chr1_2:59532315-59532334 | None:intergenic | 45.0% | |
| !! | TTTTGATGATCCACGTCGTG+TGG | + | chr1_2:59532341-59532360 | None:intergenic | 45.0% |
| !! | TGTGATGGTGCCTCTTTTAC+CGG | - | chr1_2:59532566-59532585 | Msa0081040:intron | 45.0% |
| TTCACTATCCCCGGTAAAAG+AGG | + | chr1_2:59532579-59532598 | None:intergenic | 45.0% | |
| TACCGGGGATAGTGAAGATA+AGG | - | chr1_2:59532583-59532602 | Msa0081040:intron | 45.0% | |
| TTCCTTCAGGCTCTTCTTTC+TGG | - | chr1_2:59533053-59533072 | Msa0081040:intron | 45.0% | |
| ATCCAGAAAGAAGAGCCTGA+AGG | + | chr1_2:59533058-59533077 | None:intergenic | 45.0% | |
| ! | CACTTCACTTTGGTAGTCCT+TGG | + | chr1_2:59533137-59533156 | None:intergenic | 45.0% |
| ! | TGAAGTGCCTTAGTGATGCT+GGG | - | chr1_2:59533150-59533169 | Msa0081040:CDS | 45.0% |
| !! | TACAGTGTTGATGTAGCTGG+TGG | - | chr1_2:59533291-59533310 | Msa0081040:intron | 45.0% |
| !! | ACAGTGTTGATGTAGCTGGT+GGG | - | chr1_2:59533292-59533311 | Msa0081040:intron | 45.0% |
| ATGAAGGAGCTAAGCTTGAC+TGG | + | chr1_2:59533961-59533980 | None:intergenic | 45.0% | |
| GTCAAGCTTAGCTCCTTCAT+CGG | - | chr1_2:59533961-59533980 | Msa0081040:CDS | 45.0% | |
| TCAACCCACCTTGCAGAAAT+TGG | + | chr1_2:59534051-59534070 | None:intergenic | 45.0% | |
| CACATGGTGAATGTTGTGAG+AGG | - | chr1_2:59534175-59534194 | Msa0081040:intron | 45.0% | |
| ATGTGTCTTGCCTCTCAGAT+TGG | + | chr1_2:59534255-59534274 | None:intergenic | 45.0% | |
| AATCTGAGAGGCAAGACACA+TGG | - | chr1_2:59534254-59534273 | Msa0081040:intron | 45.0% | |
| CTCTCCTGTCATAGGAAACA+AGG | - | chr1_2:59534288-59534307 | Msa0081040:intron | 45.0% | |
| ! | CTCACCTTGTTTCCTATGAC+AGG | + | chr1_2:59534295-59534314 | None:intergenic | 45.0% |
| CATGTGCTATCACAAGGGTA+AGG | + | chr1_2:59534756-59534775 | None:intergenic | 45.0% | |
| TGATAGCACATGCCACCATT+TGG | - | chr1_2:59534764-59534783 | Msa0081040:intron | 45.0% | |
| !! | GTGTCGGGCTAGTTTAATTG+TGG | + | chr1_2:59535182-59535201 | None:intergenic | 45.0% |
| !! | TTATTATTATTTATTTATTC+AGG | + | chr1_2:59534394-59534413 | None:intergenic | 5.0% |
| AGGGTGATTCCAACCATGTG+AGG | + | chr1_2:59531451-59531470 | None:intergenic | 50.0% | |
| TTTGATCGCGGATACGGATC+CGG | - | chr1_2:59531958-59531977 | Msa0081040:intron | 50.0% | |
| AACAAGCCAGCTGTTTGCAC+CGG | + | chr1_2:59531980-59531999 | None:intergenic | 50.0% | |
| ! | TCCCAATGCTACTTCCTTGG+CGG | - | chr1_2:59532224-59532243 | Msa0081040:intron | 50.0% |
| ACCGCCAAGGAAGTAGCATT+GGG | + | chr1_2:59532228-59532247 | None:intergenic | 50.0% | |
| AGTGAAATACTGTGGCAGGG+AGG | - | chr1_2:59532274-59532293 | Msa0081040:CDS | 50.0% | |
| !! | GTGATGGTGCCTCTTTTACC+GGG | - | chr1_2:59532567-59532586 | Msa0081040:intron | 50.0% |
| !! | TGATGGTGCCTCTTTTACCG+GGG | - | chr1_2:59532568-59532587 | Msa0081040:intron | 50.0% |
| CAGAGGACAACGCATTTGGT+TGG | - | chr1_2:59532910-59532929 | Msa0081040:intron | 50.0% | |
| ! | AGGAATGCGTTTTGCCAAGC+AGG | - | chr1_2:59532958-59532977 | Msa0081040:intron | 50.0% |
| CTTCTTTCTGGATGCTCAGC+TGG | - | chr1_2:59533065-59533084 | Msa0081040:intron | 50.0% | |
| ! | GTGAAGTGCCTTAGTGATGC+TGG | - | chr1_2:59533149-59533168 | Msa0081040:CDS | 50.0% |
| GTTTACCTGCCACGAGTCAT+AGG | + | chr1_2:59533820-59533839 | None:intergenic | 50.0% | |
| GTGAGAGGCTTCTCAAGATC+AGG | - | chr1_2:59534190-59534209 | Msa0081040:intron | 50.0% | |
| TTGCTCACTGCCAATCTGAG+AGG | - | chr1_2:59534242-59534261 | Msa0081040:intron | 50.0% | |
| GCTGACAACTCTCCTGTCAT+AGG | - | chr1_2:59534280-59534299 | Msa0081040:intron | 50.0% | |
| ! | TAGGTTTCCGTGCTGGTATG+CGG | - | chr1_2:59534352-59534371 | Msa0081040:CDS | 50.0% |
| TAGGCAATTGCTCTGGCTGT+TGG | - | chr1_2:59534687-59534706 | Msa0081040:intron | 50.0% | |
| ! | TTTTGACCGAGCCGCTGTTA+AGG | - | chr1_2:59534719-59534738 | Msa0081040:intron | 50.0% |
| CAATGTCCTTAACAGCGGCT+CGG | + | chr1_2:59534728-59534747 | None:intergenic | 50.0% | |
| GGTGGCATGTGCTATCACAA+GGG | + | chr1_2:59534761-59534780 | None:intergenic | 50.0% | |
| TGGTGGCATGTGCTATCACA+AGG | + | chr1_2:59534762-59534781 | None:intergenic | 50.0% | |
| ACTCATCTCACTCACTCGCT+TGG | - | chr1_2:59534817-59534836 | Msa0081040:intron | 50.0% | |
| ACTTGTGGCTCAGCCTCACA+TGG | - | chr1_2:59531435-59531454 | Msa0081040:three_prime_UTR | 55.0% | |
| TCTGCTGCTGCTAAAGGAGC+TGG | - | chr1_2:59531478-59531497 | Msa0081040:three_prime_UTR | 55.0% | |
| CACCGCCAAGGAAGTAGCAT+TGG | + | chr1_2:59532229-59532248 | None:intergenic | 55.0% | |
| GAAATACTGTGGCAGGGAGG+TGG | - | chr1_2:59532277-59532296 | Msa0081040:CDS | 55.0% | |
| TATCGCAAGACCACACGACG+TGG | - | chr1_2:59532328-59532347 | Msa0081040:CDS | 55.0% | |
| GCTGCGCAGTTGCAATTCAG+AGG | - | chr1_2:59532893-59532912 | Msa0081040:intron | 55.0% | |
| ! | ACGCATTTGGTTGGCTGCAG+TGG | - | chr1_2:59532919-59532938 | Msa0081040:intron | 55.0% |
| ! | CATTTGGTTGGCTGCAGTGG+AGG | - | chr1_2:59532922-59532941 | Msa0081040:intron | 55.0% |
| CTTTCTGGATGCTCAGCTGG+TGG | - | chr1_2:59533068-59533087 | Msa0081040:intron | 55.0% | |
| !! | CAACGGTGTTGTCACCCTAC+AGG | - | chr1_2:59533335-59533354 | Msa0081040:intron | 55.0% |
| TACTGCCTATGACTCGTGGC+AGG | - | chr1_2:59533812-59533831 | Msa0081040:intron | 55.0% | |
| CAATCACGCCAATTGCCGTG+GGG | + | chr1_2:59533992-59534011 | None:intergenic | 55.0% | |
| GCAATCACGCCAATTGCCGT+GGG | + | chr1_2:59533993-59534012 | None:intergenic | 55.0% | |
| TGCAATCACGCCAATTGCCG+TGG | + | chr1_2:59533994-59534013 | None:intergenic | 55.0% | |
| TTGCTCTGGCTGTTGGAGAC+TGG | - | chr1_2:59534694-59534713 | Msa0081040:intron | 55.0% | |
| GTGGCTCAGCCTCACATGGT+TGG | - | chr1_2:59531439-59531458 | Msa0081040:three_prime_UTR | 60.0% | |
| ACGGATCCGGTGCAAACAGC+TGG | - | chr1_2:59531971-59531990 | Msa0081040:intron | 60.0% | |
| TACTGTGGCAGGGAGGTGGT+TGG | - | chr1_2:59532281-59532300 | Msa0081040:CDS | 60.0% | |
| ! | TAGCTGGTGGGCATACCCTC+AGG | - | chr1_2:59533304-59533323 | Msa0081040:intron | 60.0% |
| ACGCCAATTGCCGTGGGGAT+CGG | + | chr1_2:59533987-59534006 | None:intergenic | 60.0% | |
| CCTTCATCGGCCGATCCCCA+CGG | - | chr1_2:59533974-59533993 | Msa0081040:CDS | 65.0% | |
| CCGTGGGGATCGGCCGATGA+AGG | + | chr1_2:59533977-59533996 | None:intergenic | 70.0% | |
| CGGCCGATCCCCACGGCAAT+TGG | - | chr1_2:59533981-59534000 | Msa0081040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59531064 | 59535269 | 59531064 | ID=Msa0081040;Name=Msa0081040 |
| chr1_2 | mRNA | 59531064 | 59535269 | 59531064 | ID=Msa0081040-mRNA-1;Parent=Msa0081040;Name=Msa0081040-mRNA-1;_AED=0.11;_eAED=0.11;_QI=237|1|1|1|1|1|12|472|416 |
| chr1_2 | exon | 59531064 | 59531643 | 59531064 | ID=Msa0081040-mRNA-1:exon:19282;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59532024 | 59532169 | 59532024 | ID=Msa0081040-mRNA-1:exon:19281;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59532272 | 59532377 | 59532272 | ID=Msa0081040-mRNA-1:exon:19280;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59532500 | 59532577 | 59532500 | ID=Msa0081040-mRNA-1:exon:19279;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59532715 | 59532768 | 59532715 | ID=Msa0081040-mRNA-1:exon:19278;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59532977 | 59533037 | 59532977 | ID=Msa0081040-mRNA-1:exon:19277;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59533147 | 59533271 | 59533147 | ID=Msa0081040-mRNA-1:exon:19276;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59533354 | 59533440 | 59533354 | ID=Msa0081040-mRNA-1:exon:19275;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59533729 | 59533802 | 59533729 | ID=Msa0081040-mRNA-1:exon:19274;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59533912 | 59534041 | 59533912 | ID=Msa0081040-mRNA-1:exon:19273;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59534325 | 59534407 | 59534325 | ID=Msa0081040-mRNA-1:exon:19272;Parent=Msa0081040-mRNA-1 |
| chr1_2 | exon | 59534834 | 59535269 | 59534834 | ID=Msa0081040-mRNA-1:exon:19271;Parent=Msa0081040-mRNA-1 |
| chr1_2 | five_prime_UTR | 59535033 | 59535269 | 59535033 | ID=Msa0081040-mRNA-1:five_prime_utr;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59534834 | 59535032 | 59534834 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59534325 | 59534407 | 59534325 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59533912 | 59534041 | 59533912 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59533729 | 59533802 | 59533729 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59533354 | 59533440 | 59533354 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59533147 | 59533271 | 59533147 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59532977 | 59533037 | 59532977 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59532715 | 59532768 | 59532715 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59532500 | 59532577 | 59532500 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59532272 | 59532377 | 59532272 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59532024 | 59532169 | 59532024 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | CDS | 59531536 | 59531643 | 59531536 | ID=Msa0081040-mRNA-1:cds;Parent=Msa0081040-mRNA-1 |
| chr1_2 | three_prime_UTR | 59531064 | 59531535 | 59531064 | ID=Msa0081040-mRNA-1:three_prime_utr;Parent=Msa0081040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
