Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342770 | XP_024638902.1 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342770 | sp|Q9SFF6|PAE12_ARATH | 69.378 | 418 | 123 | 4 | 1 | 416 | 1 | 415 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342770 | A0A396JTP5 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036820 | Msa1342770 | 0.922537 | 8.642952e-89 | -8.615850e-47 |
| Msa0081040 | Msa1342770 | 0.998251 | 6.490782e-260 | -8.615850e-47 |
| Msa0621030 | Msa1342770 | 0.978737 | 1.869629e-146 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342770 | MtrunA17_Chr1g0193381 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Msa1342770 | MtrunA17_Chr7g0271231 | 74.641 | 418 | 103 | 2 | 1 | 415 | 1 | 418 | 0.0 | 664 |
| Msa1342770 | MtrunA17_Chr7g0270931 | 71.925 | 374 | 105 | 0 | 42 | 415 | 41 | 414 | 0.0 | 600 |
| Msa1342770 | MtrunA17_Chr4g0069571 | 74.659 | 367 | 93 | 0 | 49 | 415 | 54 | 420 | 0.0 | 587 |
| Msa1342770 | MtrunA17_Chr1g0193761 | 69.867 | 375 | 113 | 0 | 42 | 416 | 29 | 403 | 0.0 | 585 |
| Msa1342770 | MtrunA17_Chr5g0408881 | 56.354 | 362 | 156 | 1 | 53 | 412 | 29 | 390 | 4.08e-159 | 455 |
| Msa1342770 | MtrunA17_Chr8g0369681 | 52.815 | 373 | 174 | 1 | 46 | 416 | 20 | 392 | 2.66e-157 | 449 |
| Msa1342770 | MtrunA17_Chr8g0369651 | 53.369 | 371 | 171 | 1 | 48 | 416 | 23 | 393 | 1.07e-155 | 445 |
| Msa1342770 | MtrunA17_Chr5g0418101 | 51.639 | 366 | 171 | 2 | 48 | 411 | 37 | 398 | 1.45e-146 | 422 |
| Msa1342770 | MtrunA17_Chr1g0203101 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 5.53e-146 | 421 |
| Msa1342770 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 2.85e-144 | 417 |
| Msa1342770 | MtrunA17_Chr7g0238491 | 50.535 | 374 | 173 | 4 | 51 | 415 | 55 | 425 | 2.12e-138 | 402 |
| Msa1342770 | MtrunA17_Chr1g0163701 | 60.194 | 103 | 41 | 0 | 233 | 335 | 270 | 372 | 2.00e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342770 | AT3G05910.1 | 69.378 | 418 | 123 | 4 | 1 | 416 | 1 | 415 | 0.0 | 615 |
| Msa1342770 | AT5G26670.1 | 69.212 | 419 | 123 | 4 | 1 | 416 | 1 | 416 | 0.0 | 604 |
| Msa1342770 | AT1G57590.1 | 73.171 | 369 | 99 | 0 | 48 | 416 | 75 | 443 | 0.0 | 589 |
| Msa1342770 | AT3G62060.2 | 64.878 | 410 | 137 | 2 | 7 | 415 | 15 | 418 | 0.0 | 578 |
| Msa1342770 | AT3G62060.1 | 64.720 | 411 | 138 | 2 | 7 | 416 | 15 | 419 | 0.0 | 577 |
| Msa1342770 | AT2G46930.1 | 62.954 | 413 | 146 | 2 | 4 | 416 | 11 | 416 | 0.0 | 568 |
| Msa1342770 | AT5G26670.3 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 3.24e-170 | 478 |
| Msa1342770 | AT5G26670.2 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 3.24e-170 | 478 |
| Msa1342770 | AT5G26670.4 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 3.24e-170 | 478 |
| Msa1342770 | AT4G19420.1 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 6.40e-163 | 464 |
| Msa1342770 | AT4G19420.2 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 6.40e-163 | 464 |
| Msa1342770 | AT1G09550.1 | 60.350 | 343 | 135 | 1 | 52 | 394 | 41 | 382 | 4.96e-159 | 454 |
| Msa1342770 | AT4G19420.4 | 53.000 | 400 | 151 | 2 | 53 | 415 | 25 | 424 | 4.81e-156 | 447 |
| Msa1342770 | AT5G23870.1 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 2.92e-151 | 435 |
| Msa1342770 | AT5G23870.4 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 2.92e-151 | 435 |
| Msa1342770 | AT5G23870.2 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 6.44e-151 | 435 |
| Msa1342770 | AT5G23870.3 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 9.27e-151 | 435 |
| Msa1342770 | AT3G05910.2 | 66.019 | 309 | 100 | 4 | 1 | 307 | 1 | 306 | 1.15e-147 | 422 |
| Msa1342770 | AT4G19410.1 | 51.359 | 368 | 176 | 2 | 46 | 410 | 17 | 384 | 1.86e-145 | 419 |
| Msa1342770 | AT3G09410.1 | 50.402 | 373 | 182 | 1 | 46 | 415 | 54 | 426 | 2.15e-144 | 418 |
| Msa1342770 | AT5G45280.2 | 49.457 | 368 | 183 | 2 | 46 | 410 | 17 | 384 | 1.07e-142 | 412 |
| Msa1342770 | AT4G19410.2 | 50.847 | 354 | 172 | 1 | 46 | 397 | 17 | 370 | 1.81e-137 | 404 |
| Msa1342770 | AT3G09405.1 | 49.864 | 367 | 179 | 2 | 47 | 410 | 45 | 409 | 3.33e-136 | 396 |
| Msa1342770 | AT3G09410.3 | 49.412 | 340 | 169 | 1 | 46 | 382 | 54 | 393 | 1.73e-126 | 371 |
| Msa1342770 | AT5G45280.1 | 52.055 | 292 | 138 | 1 | 43 | 332 | 14 | 305 | 3.61e-116 | 344 |
| Msa1342770 | AT3G09405.2 | 50.165 | 303 | 146 | 2 | 111 | 410 | 2 | 302 | 4.79e-112 | 331 |
| Msa1342770 | AT4G19420.3 | 58.403 | 238 | 94 | 2 | 53 | 288 | 25 | 259 | 5.11e-96 | 290 |
Find 131 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCAGGCTCTTCTTTC+TGG | -0.013953 | tig0006028:-27982 | Msa1342770:intron |
| TCAACCCACCTTGCAGAAAT+TGG | 0.177359 | tig0006028:+26987 | None:intergenic |
| TCTAGTTGGAATCGAATAAA+AGG | 0.185475 | tig0006028:-25912 | Msa1342770:three_prime_UTR |
| TTATTACAATGTATATATTT+TGG | 0.192930 | tig0006028:+25987 | None:intergenic |
| TTTGTTTCAGTGCTTCTTTC+CGG | 0.212409 | tig0006028:-27289 | Msa1342770:intron |
| TTGCTTAATATTCCAGTAAA+AGG | 0.219538 | tig0006028:+28656 | None:intergenic |
| TCTCCCTAACTACTAATTCT+TGG | 0.240653 | tig0006028:+26096 | None:intergenic |
| TAGCAGCAGCAGATTGAATA+AGG | 0.246442 | tig0006028:+29567 | None:intergenic |
| AGAAGCTTCATGAGCTTCTA+AGG | 0.265076 | tig0006028:+29634 | None:intergenic |
| GTGAACCAGAACATTTATTA+TGG | 0.270304 | tig0006028:+27014 | None:intergenic |
| CAGCTGGCTTGTTAATTTAG+AGG | 0.278550 | tig0006028:-29048 | Msa1342770:intron |
| CTAGTTTAATTGTGGTAATA+TGG | 0.292476 | tig0006028:+25864 | None:intergenic |
| TTTATTCGATTCCAACTAGA+AGG | 0.305485 | tig0006028:+25915 | None:intergenic |
| TCCTCACTAAATACTAATTA+AGG | 0.308311 | tig0006028:+29861 | None:intergenic |
| CTTCTTTCTGGATGCTCAGC+TGG | 0.328684 | tig0006028:-27970 | Msa1342770:CDS |
| CACTTCACTTTGGTAGTCCT+TGG | 0.337219 | tig0006028:+27901 | None:intergenic |
| TTAAACCATAATAAATGTTC+TGG | 0.344297 | tig0006028:-27019 | Msa1342770:CDS |
| TTCTCAAGATCAGGTCAAAA+TGG | 0.355306 | tig0006028:-26836 | Msa1342770:CDS |
| CGGCCGATCCCCACGGCAAT+TGG | 0.361858 | tig0006028:-27054 | Msa1342770:CDS |
| TAAAATCTGATACAGGATTC+AGG | 0.362095 | tig0006028:-26886 | Msa1342770:intron |
| TTCATTTCTCATCAACAATT+CGG | 0.363972 | tig0006028:-26195 | Msa1342770:three_prime_UTR |
| TTATGTATAGATCAATTAGT+TGG | 0.402375 | tig0006028:-26066 | Msa1342770:three_prime_UTR |
| TGAGTGAGACTGAAGAAGTT+TGG | 0.409862 | tig0006028:+26236 | None:intergenic |
| AATTCAGAGGACAACGCATT+TGG | 0.411794 | tig0006028:-28129 | Msa1342770:CDS |
| GTTTACCTGCCACGAGTCAT+AGG | 0.421718 | tig0006028:+27218 | None:intergenic |
| TATGATGTTTCCCTTCTAGT+TGG | 0.422993 | tig0006028:-25926 | Msa1342770:three_prime_UTR |
| TATGTATAGATCAATTAGTT+GGG | 0.425796 | tig0006028:-26065 | Msa1342770:three_prime_UTR |
| ACGTGGATCATCAAAATTCA+TGG | 0.426749 | tig0006028:-28690 | Msa1342770:CDS |
| AGATGAGCATTGATAGTGAT+TGG | 0.434460 | tig0006028:-25965 | Msa1342770:three_prime_UTR |
| AAGACAATGTATGTGTTTGC+CGG | 0.435303 | tig0006028:+29971 | None:intergenic |
| TGATAGCACATGCCACCATT+TGG | 0.437780 | tig0006028:-26271 | Msa1342770:CDS |
| TTGGTTTATAGTAGGAAAGA+AGG | 0.441666 | tig0006028:+29827 | None:intergenic |
| GCTGACAACTCTCCTGTCAT+AGG | 0.444782 | tig0006028:-26755 | Msa1342770:CDS |
| TAACTACTAATTCTTGGAAA+AGG | 0.447014 | tig0006028:+26102 | None:intergenic |
| AGGGAAGTAAGAAGAGAAGA+GGG | 0.454239 | tig0006028:+29932 | None:intergenic |
| TTTCCAAGAATTAGTAGTTA+GGG | 0.455512 | tig0006028:-26099 | Msa1342770:three_prime_UTR |
| ATTCAATCTGCTGCTGCTAA+AGG | 0.458885 | tig0006028:-29563 | Msa1342770:CDS |
| ACTTCACTTTGGTAGTCCTT+GGG | 0.459019 | tig0006028:+27902 | None:intergenic |
| TACCTTATCTTCACTATCCC+CGG | 0.462721 | tig0006028:+28450 | None:intergenic |
| ACGCCAATTGCCGTGGGGAT+CGG | 0.463148 | tig0006028:+27051 | None:intergenic |
| TGCGATAGACGCAAGTTCTA+CGG | 0.464930 | tig0006028:+28723 | None:intergenic |
| ATGAAGGAGCTAAGCTTGAC+TGG | 0.465960 | tig0006028:+27077 | None:intergenic |
| TTGCTCTGGCTGTTGGAGAC+TGG | 0.473165 | tig0006028:-26341 | Msa1342770:CDS |
| CAACGGTGTTGTCACCCTAC+AGG | 0.473602 | tig0006028:-27700 | Msa1342770:intron |
| GTGAGAGGCTTCTCAAGATC+AGG | 0.473932 | tig0006028:-26845 | Msa1342770:CDS |
| TTAATATTAATAAAGAATGA+AGG | 0.474822 | tig0006028:+29901 | None:intergenic |
| ACGCATTTGGTTGGCTGCAG+TGG | 0.483484 | tig0006028:-28116 | Msa1342770:CDS |
| ATCACTAAGGCACTTCACTT+TGG | 0.485245 | tig0006028:+27891 | None:intergenic |
| GTGAAGTGCCTTAGTGATGC+TGG | 0.487536 | tig0006028:-27886 | Msa1342770:CDS |
| TAGCTGGTGGGCATACCCTC+AGG | 0.487893 | tig0006028:-27731 | Msa1342770:CDS |
| GTGGAGGATTTGATGTCAAA+AGG | 0.488280 | tig0006028:-28097 | Msa1342770:CDS |
| ACTAGAAGGGAAACATCATA+TGG | 0.489575 | tig0006028:+25929 | None:intergenic |
| ACGGATCCGGTGCAAACAGC+TGG | 0.489904 | tig0006028:-29064 | Msa1342770:CDS |
| CTCACCTTGTTTCCTATGAC+AGG | 0.490925 | tig0006028:+26743 | None:intergenic |
| CCGTGGGGATCGGCCGATGA+AGG | 0.493491 | tig0006028:+27061 | None:intergenic |
| CTAGTTGGAATCGAATAAAA+GGG | 0.493956 | tig0006028:-25911 | Msa1342770:three_prime_UTR |
| TTTGATCGCGGATACGGATC+CGG | 0.495604 | tig0006028:-29077 | Msa1342770:CDS |
| TACCGGGGATAGTGAAGATA+AGG | 0.496636 | tig0006028:-28452 | Msa1342770:intron |
| ACTCATCTCACTCACTCGCT+TGG | 0.503810 | tig0006028:-26218 | Msa1342770:three_prime_UTR |
| CAGAGGACAACGCATTTGGT+TGG | 0.504022 | tig0006028:-28125 | Msa1342770:CDS |
| TAGGCAATTGCTCTGGCTGT+TGG | 0.506232 | tig0006028:-26348 | Msa1342770:CDS |
| TGGTTTATAGTAGGAAAGAA+GGG | 0.508233 | tig0006028:+29828 | None:intergenic |
| AGACAATGTATGTGTTTGCC+GGG | 0.508933 | tig0006028:+29972 | None:intergenic |
| TTCACTATCCCCGGTAAAAG+AGG | 0.509811 | tig0006028:+28459 | None:intergenic |
| GAGAAGAGGGAGATTTAGAA+AGG | 0.509858 | tig0006028:+29945 | None:intergenic |
| CAGTATTAAGAATGAATAGC+GGG | 0.512415 | tig0006028:+27241 | None:intergenic |
| ACTTGTGGCTCAGCCTCACA+TGG | 0.512424 | tig0006028:-29600 | Msa1342770:CDS |
| AGCAGCAGCAGATTGAATAA+GGG | 0.515953 | tig0006028:+29568 | None:intergenic |
| GAGGGAAGTAAGAAGAGAAG+AGG | 0.516418 | tig0006028:+29931 | None:intergenic |
| ATGTGTCTTGCCTCTCAGAT+TGG | 0.519666 | tig0006028:+26783 | None:intergenic |
| ATACTAGCAATCAAGTTCTC+CGG | 0.520958 | tig0006028:+27270 | None:intergenic |
| CATTTGGTTGGCTGCAGTGG+AGG | 0.521238 | tig0006028:-28113 | Msa1342770:CDS |
| AAGAATGAAGGGTAAGAAGA+GGG | 0.523824 | tig0006028:+29913 | None:intergenic |
| TTACACTGCGATGAATTTCG+AGG | 0.526633 | tig0006028:-27931 | Msa1342770:CDS |
| GAAATAACCCAGCATCACTA+AGG | 0.526893 | tig0006028:+27878 | None:intergenic |
| CCGCGATCAAAATGATAAGC+AGG | 0.530290 | tig0006028:+29089 | None:intergenic |
| TTACAATGCAAACCCAGAAA+AGG | 0.531063 | tig0006028:+29726 | None:intergenic |
| CTTTCTGGATGCTCAGCTGG+TGG | 0.531189 | tig0006028:-27967 | Msa1342770:CDS |
| TGCAATCACGCCAATTGCCG+TGG | 0.532481 | tig0006028:+27044 | None:intergenic |
| AACAAGCCAGCTGTTTGCAC+CGG | 0.541065 | tig0006028:+29058 | None:intergenic |
| TACTGCCTATGACTCGTGGC+AGG | 0.541796 | tig0006028:-27223 | Msa1342770:intron |
| TGGCTCATCTGAAAACCAAA+TGG | 0.544159 | tig0006028:+26256 | None:intergenic |
| AATAATGCTCAAGAGAATCC+AGG | 0.544827 | tig0006028:-28635 | Msa1342770:intron |
| AAAGAATGAAGGGTAAGAAG+AGG | 0.552469 | tig0006028:+29912 | None:intergenic |
| CTCTCCTGTCATAGGAAACA+AGG | 0.552688 | tig0006028:-26747 | Msa1342770:intron |
| TGCATTTGCATCAACCCAGT+TGG | 0.557817 | tig0006028:+29688 | None:intergenic |
| TCTGCTGCTGCTAAAGGAGC+TGG | 0.564131 | tig0006028:-29557 | Msa1342770:intron |
| GCAATCACGCCAATTGCCGT+GGG | 0.571050 | tig0006028:+27045 | None:intergenic |
| AATTTCGAGGTCATTTCCCA+AGG | 0.572709 | tig0006028:-27918 | Msa1342770:CDS |
| GTGGCTCAGCCTCACATGGT+TGG | 0.572897 | tig0006028:-29596 | Msa1342770:CDS |
| TTATTCGATTCCAACTAGAA+GGG | 0.575258 | tig0006028:+25916 | None:intergenic |
| TAATATTAATAAAGAATGAA+GGG | 0.575654 | tig0006028:+29902 | None:intergenic |
| ATATCAATTATTACCGAAGT+GGG | 0.578018 | tig0006028:+27425 | None:intergenic |
| GAATACAGTGTTGATGTAGC+TGG | 0.581901 | tig0006028:-27747 | Msa1342770:intron |
| CAATATGTAGGCAATTGCTC+TGG | 0.584344 | tig0006028:-26355 | Msa1342770:intron |
| GTGTCGGGCTAGTTTAATTG+TGG | 0.585821 | tig0006028:+25856 | None:intergenic |
| GAAATACTGTGGCAGGGAGG+TGG | 0.587258 | tig0006028:-28758 | Msa1342770:intron |
| GATATCAATTATTACCGAAG+TGG | 0.589141 | tig0006028:+27424 | None:intergenic |
| GAAGTCCAGAAGATAAAATG+AGG | 0.591146 | tig0006028:+25886 | None:intergenic |
| TCCTTAATTAGTATTTAGTG+AGG | 0.596583 | tig0006028:-29862 | Msa1342770:five_prime_UTR |
| CATGTGCTATCACAAGGGTA+AGG | 0.597112 | tig0006028:+26282 | None:intergenic |
| CCTTCATCGGCCGATCCCCA+CGG | 0.597346 | tig0006028:-27061 | Msa1342770:CDS |
| GTGAAAATTCGTTACTGTGA+TGG | 0.602298 | tig0006028:-28484 | Msa1342770:CDS |
| CAATGTCCTTAACAGCGGCT+CGG | 0.605068 | tig0006028:+26310 | None:intergenic |
| TACTGTGGCAGGGAGGTGGT+TGG | 0.606796 | tig0006028:-28754 | Msa1342770:intron |
| TGGTGGCATGTGCTATCACA+AGG | 0.607600 | tig0006028:+26276 | None:intergenic |
| AATCTGAGAGGCAAGACACA+TGG | 0.627362 | tig0006028:-26781 | Msa1342770:CDS |
| TAATCATCTTGATCCCACTT+CGG | 0.628050 | tig0006028:-27438 | Msa1342770:intron |
| GTCAAGCTTAGCTCCTTCAT+CGG | 0.630234 | tig0006028:-27074 | Msa1342770:CDS |
| TCACAAATCCAATTTCTGCA+AGG | 0.632203 | tig0006028:-26995 | Msa1342770:intron |
| TATCGCAAGACCACACGACG+TGG | 0.635251 | tig0006028:-28707 | Msa1342770:CDS |
| TGAAGTGCCTTAGTGATGCT+GGG | 0.640149 | tig0006028:-27885 | Msa1342770:CDS |
| ATGTATGTGTACAACCTGCT+TGG | 0.643481 | tig0006028:+28063 | None:intergenic |
| AGGGTGATTCCAACCATGTG+AGG | 0.644329 | tig0006028:+29587 | None:intergenic |
| TTAATACTGCCTATGACTCG+TGG | 0.644352 | tig0006028:-27227 | Msa1342770:CDS |
| GCTGCGCAGTTGCAATTCAG+AGG | 0.649968 | tig0006028:-28142 | Msa1342770:CDS |
| TTGCTCACTGCCAATCTGAG+AGG | 0.650325 | tig0006028:-26793 | Msa1342770:CDS |
| CTCATCTGAAAACCAAATGG+TGG | 0.655239 | tig0006028:+26259 | None:intergenic |
| TTAGAAAGAAACAATAACCA+TGG | 0.656885 | tig0006028:-29753 | Msa1342770:exon |
| GTGAAAGAAACAAAACACAA+AGG | 0.660481 | tig0006028:+29794 | None:intergenic |
| AGATGATTAGTACAAACGCG+TGG | 0.666672 | tig0006028:+27452 | None:intergenic |
| TACAGGATTCAGGAATCACA+TGG | 0.672670 | tig0006028:-26876 | Msa1342770:intron |
| GCAGTATTAAGAATGAATAG+CGG | 0.673265 | tig0006028:+27240 | None:intergenic |
| TACAGTGTTGATGTAGCTGG+TGG | 0.678330 | tig0006028:-27744 | Msa1342770:intron |
| CACATGGTGAATGTTGTGAG+AGG | 0.686276 | tig0006028:-26860 | Msa1342770:CDS |
| ACAATCAATGTCCTTAACAG+CGG | 0.695254 | tig0006028:+26305 | None:intergenic |
| AACCCAGAAAAGGTTCACCA+TGG | 0.700911 | tig0006028:+29736 | None:intergenic |
| CAATCACGCCAATTGCCGTG+GGG | 0.703508 | tig0006028:+27046 | None:intergenic |
| ACAGTGTTGATGTAGCTGGT+GGG | 0.721028 | tig0006028:-27743 | Msa1342770:intron |
| AGTATTAAGAATGAATAGCG+GGG | 0.730636 | tig0006028:+27242 | None:intergenic |
| GGTGGCATGTGCTATCACAA+GGG | 0.739938 | tig0006028:+26277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTAATAAAGAATGAA+GGG | + | tig0006028:25859-25878 | None:intergenic | 10.0% |
| !! | TTAATATTAATAAAGAATGA+AGG | + | tig0006028:25860-25879 | None:intergenic | 10.0% |
| !!! | ATACTTAATTAATTTGTTTT+TGG | - | tig0006028:26623-26642 | Msa1342770:intron | 10.0% |
| !! | ATCATAAAATATGATTTATT+CGG | + | tig0006028:28595-28614 | None:intergenic | 10.0% |
| !!! | TTATTACAATGTATATATTT+TGG | + | tig0006028:29774-29793 | None:intergenic | 10.0% |
| !!! | AACATTTTTTATAACAAAGA+AGG | + | tig0006028:26243-26262 | None:intergenic | 15.0% |
| !!! | AACAATTAGGAATTAATTTT+AGG | + | tig0006028:27983-28002 | None:intergenic | 15.0% |
| !! | AGGTTTAGTTAAAATATTAT+AGG | - | tig0006028:29056-29075 | Msa1342770:CDS | 15.0% |
| !!! | CAAAATTTTTGGTTTATAGT+AGG | + | tig0006028:25942-25961 | None:intergenic | 20.0% |
| !!! | TGAGTTAAAGATTTCTTTTT+TGG | + | tig0006028:26562-26581 | None:intergenic | 20.0% |
| !! | TCAATATGTTCATATTGTAA+AGG | - | tig0006028:26797-26816 | Msa1342770:CDS | 20.0% |
| !! | TAAAAAAATCTGCAATCATA+CGG | + | tig0006028:27243-27262 | None:intergenic | 20.0% |
| !! | AAAACCTTAATGAATAAAGT+TGG | + | tig0006028:27357-27376 | None:intergenic | 20.0% |
| !!! | TTATTCATTAAGGTTTTCAT+AGG | - | tig0006028:27360-27379 | Msa1342770:intron | 20.0% |
| !! | AAATCATGTGATAATAATGA+TGG | + | tig0006028:27955-27974 | None:intergenic | 20.0% |
| !! | AGGAAAAAGATATTACTAAA+AGG | + | tig0006028:28450-28469 | None:intergenic | 20.0% |
| !!! | TAAACATCTTATTTCTAACT+CGG | - | tig0006028:28558-28577 | Msa1342770:intron | 20.0% |
| !!! | AAATCATATTTTATGATCTG+TGG | - | tig0006028:28598-28617 | Msa1342770:intron | 20.0% |
| !! | TTAAACCATAATAAATGTTC+TGG | - | tig0006028:28739-28758 | Msa1342770:CDS | 20.0% |
| !! | ATTTAACTAAAATCTGATAC+AGG | - | tig0006028:28865-28884 | Msa1342770:intron | 20.0% |
| !! | TTATGTATAGATCAATTAGT+TGG | - | tig0006028:29692-29711 | Msa1342770:CDS | 20.0% |
| !! | TATGTATAGATCAATTAGTT+GGG | - | tig0006028:29693-29712 | Msa1342770:CDS | 20.0% |
| !!! | AAGCTTTGTAAAAATCAAAA+GGG | + | tig0006028:29733-29752 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTTACAAAGCTT+GGG | - | tig0006028:29733-29752 | Msa1342770:CDS | 20.0% |
| ! | TCCTTAATTAGTATTTAGTG+AGG | - | tig0006028:25896-25915 | Msa1342770:three_prime_UTR | 25.0% |
| ! | TCCTCACTAAATACTAATTA+AGG | + | tig0006028:25900-25919 | None:intergenic | 25.0% |
| ! | TTAGAAAGAAACAATAACCA+TGG | - | tig0006028:26005-26024 | Msa1342770:three_prime_UTR | 25.0% |
| ! | ATAACAAAGAAGGTTAGAAA+TGG | + | tig0006028:26233-26252 | None:intergenic | 25.0% |
| ! | ATATATAACATGGCAAATTG+GGG | + | tig0006028:26483-26502 | None:intergenic | 25.0% |
| ! | CATATATAACATGGCAAATT+GGG | + | tig0006028:26484-26503 | None:intergenic | 25.0% |
| ! | ACATATATAACATGGCAAAT+TGG | + | tig0006028:26485-26504 | None:intergenic | 25.0% |
| ! | TCACATTCACATATATAACA+TGG | + | tig0006028:26493-26512 | None:intergenic | 25.0% |
| !!! | TAAATCTGTAGCTTTTGATT+TGG | - | tig0006028:26588-26607 | Msa1342770:intron | 25.0% |
| !!! | TTTCTAGTTAGAAGTTTTGT+TGG | - | tig0006028:26853-26872 | Msa1342770:CDS | 25.0% |
| !!! | TTCTAGTTAGAAGTTTTGTT+GGG | - | tig0006028:26854-26873 | Msa1342770:CDS | 25.0% |
| ! | GATATTTAAGTGAAATACTG+TGG | - | tig0006028:26989-27008 | Msa1342770:intron | 25.0% |
| ! | TTGCTTAATATTCCAGTAAA+AGG | + | tig0006028:27105-27124 | None:intergenic | 25.0% |
| ! | TACTCAAATTATGCTGAAAA+AGG | - | tig0006028:27188-27207 | Msa1342770:intron | 25.0% |
| !!! | TGATTGCAGATTTTTTTAAC+TGG | - | tig0006028:27245-27264 | Msa1342770:CDS | 25.0% |
| ! | ATAGCCAACTTTATTCATTA+AGG | - | tig0006028:27350-27369 | Msa1342770:intron | 25.0% |
| ! | TGTTTGTTTGATTGAAAGTT+AGG | - | tig0006028:27432-27451 | Msa1342770:intron | 25.0% |
| ! | TTAGTCGATCTATTTAATGT+AGG | - | tig0006028:27549-27568 | Msa1342770:intron | 25.0% |
| ! | TAGTCGATCTATTTAATGTA+GGG | - | tig0006028:27550-27569 | Msa1342770:intron | 25.0% |
| ! | ACAGATAATATTCAGAAATC+AGG | + | tig0006028:27588-27607 | None:intergenic | 25.0% |
| ! | TGAATATTATCTGTTGACAT+AGG | - | tig0006028:27594-27613 | Msa1342770:intron | 25.0% |
| ! | TAGAATGAAATACTGAAGTT+AGG | + | tig0006028:27920-27939 | None:intergenic | 25.0% |
| ! | CACATGCTAAATAGTTTATA+TGG | - | tig0006028:28179-28198 | Msa1342770:intron | 25.0% |
| ! | AGTTTATATGGCTTAAAACT+TGG | - | tig0006028:28191-28210 | Msa1342770:intron | 25.0% |
| ! | CAATCATCATGCTTTATATA+AGG | + | tig0006028:28238-28257 | None:intergenic | 25.0% |
| ! | ATATCAATTATTACCGAAGT+GGG | + | tig0006028:28336-28355 | None:intergenic | 25.0% |
| ! | GTTTCATTTGAATGAATTTG+AGG | - | tig0006028:28384-28403 | Msa1342770:intron | 25.0% |
| ! | AATATGATTTATTCGGAGTT+TGG | + | tig0006028:28588-28607 | None:intergenic | 25.0% |
| !!! | ATTTTAACTAAACCTGCATA+GGG | + | tig0006028:29051-29070 | None:intergenic | 25.0% |
| !!! | TATTTTAACTAAACCTGCAT+AGG | + | tig0006028:29052-29071 | None:intergenic | 25.0% |
| ! | GAATAGTTTATAGCAAAAAC+AGG | + | tig0006028:29166-29185 | None:intergenic | 25.0% |
| !! | TTTGCTATAAACTATTCACA+TGG | - | tig0006028:29169-29188 | Msa1342770:intron | 25.0% |
| ! | TTCACATGGAGAAAAATTAT+AGG | - | tig0006028:29183-29202 | Msa1342770:intron | 25.0% |
| ! | TACATATTGTCAATGCATAA+GGG | + | tig0006028:29392-29411 | None:intergenic | 25.0% |
| ! | TTCATTTCTCATCAACAATT+CGG | - | tig0006028:29563-29582 | Msa1342770:CDS | 25.0% |
| ! | TAACTACTAATTCTTGGAAA+AGG | + | tig0006028:29659-29678 | None:intergenic | 25.0% |
| !! | TTTTCCAAGAATTAGTAGTT+AGG | - | tig0006028:29658-29677 | Msa1342770:CDS | 25.0% |
| ! | TTTCCAAGAATTAGTAGTTA+GGG | - | tig0006028:29659-29678 | Msa1342770:CDS | 25.0% |
| !! | CAAGCTTTGTAAAAATCAAA+AGG | + | tig0006028:29734-29753 | None:intergenic | 25.0% |
| !!! | CTTTTGATTTTTACAAAGCT+TGG | - | tig0006028:29732-29751 | Msa1342770:CDS | 25.0% |
| ! | CTAGTTTAATTGTGGTAATA+TGG | + | tig0006028:29897-29916 | None:intergenic | 25.0% |
| TGGTTTATAGTAGGAAAGAA+GGG | + | tig0006028:25933-25952 | None:intergenic | 30.0% | |
| TTGGTTTATAGTAGGAAAGA+AGG | + | tig0006028:25934-25953 | None:intergenic | 30.0% | |
| !! | ACACAAAGGTGCAAAATTTT+TGG | + | tig0006028:25953-25972 | None:intergenic | 30.0% |
| GTGAAAGAAACAAAACACAA+AGG | + | tig0006028:25967-25986 | None:intergenic | 30.0% | |
| ! | TTCTTCTTTTTCTTCACTTG+TGG | - | tig0006028:26143-26162 | Msa1342770:three_prime_UTR | 30.0% |
| TTTCAGCAACAAAACTTCAA+AGG | + | tig0006028:26435-26454 | None:intergenic | 30.0% | |
| TATATAACATGGCAAATTGG+GGG | + | tig0006028:26482-26501 | None:intergenic | 30.0% | |
| AGGATAACAAGTCTTTCTAT+TGG | - | tig0006028:26817-26836 | Msa1342770:CDS | 30.0% | |
| !!! | TCTAGTTAGAAGTTTTGTTG+GGG | - | tig0006028:26855-26874 | Msa1342770:CDS | 30.0% |
| ! | GAAAAAGTGATACCTTTTAC+TGG | - | tig0006028:27090-27109 | Msa1342770:intron | 30.0% |
| ! | AAAGGATTTGCTTAACTGTT+TGG | - | tig0006028:27206-27225 | Msa1342770:intron | 30.0% |
| AACTGTATGAATGATGCATA+AGG | - | tig0006028:27483-27502 | Msa1342770:intron | 30.0% | |
| ! | TTTACAACTTTGTTTCCTTC+AGG | - | tig0006028:27763-27782 | Msa1342770:intron | 30.0% |
| !! | TGTGATAATAATGATGGACA+TGG | + | tig0006028:27949-27968 | None:intergenic | 30.0% |
| ! | TTCTTGAGATCATTCTGTTT+TGG | - | tig0006028:28095-28114 | Msa1342770:CDS | 30.0% |
| !! | TAAAACTTGGTCATTTTGCA+TGG | - | tig0006028:28204-28223 | Msa1342770:intron | 30.0% |
| !! | TATATTTTTGCACTCATTGC+AGG | - | tig0006028:28266-28285 | Msa1342770:intron | 30.0% |
| !! | ATATTTTTGCACTCATTGCA+GGG | - | tig0006028:28267-28286 | Msa1342770:intron | 30.0% |
| GATATCAATTATTACCGAAG+TGG | + | tig0006028:28337-28356 | None:intergenic | 30.0% | |
| CTCTGAACAATAATTAACGA+CGG | + | tig0006028:28423-28442 | None:intergenic | 30.0% | |
| AGTATTAAGAATGAATAGCG+GGG | + | tig0006028:28519-28538 | None:intergenic | 30.0% | |
| CAGTATTAAGAATGAATAGC+GGG | + | tig0006028:28520-28539 | None:intergenic | 30.0% | |
| GCAGTATTAAGAATGAATAG+CGG | + | tig0006028:28521-28540 | None:intergenic | 30.0% | |
| GTGAACCAGAACATTTATTA+TGG | + | tig0006028:28747-28766 | None:intergenic | 30.0% | |
| TAAAATCTGATACAGGATTC+AGG | - | tig0006028:28872-28891 | Msa1342770:intron | 30.0% | |
| AGCAGTGTCATGAAAAATAA+TGG | + | tig0006028:29271-29290 | None:intergenic | 30.0% | |
| CTACATATTGTCAATGCATA+AGG | + | tig0006028:29393-29412 | None:intergenic | 30.0% | |
| ! | CTTATGCATTGACAATATGT+AGG | - | tig0006028:29391-29410 | Msa1342770:intron | 30.0% |
| TTATTCGATTCCAACTAGAA+GGG | + | tig0006028:29845-29864 | None:intergenic | 30.0% | |
| TTTATTCGATTCCAACTAGA+AGG | + | tig0006028:29846-29865 | None:intergenic | 30.0% | |
| TCTAGTTGGAATCGAATAAA+AGG | - | tig0006028:29846-29865 | Msa1342770:five_prime_UTR | 30.0% | |
| CTAGTTGGAATCGAATAAAA+GGG | - | tig0006028:29847-29866 | Msa1342770:five_prime_UTR | 30.0% | |
| TCTACAAAAATTCGAAGTGT+CGG | + | tig0006028:29921-29940 | None:intergenic | 30.0% | |
| AAGAATGAAGGGTAAGAAGA+GGG | + | tig0006028:25848-25867 | None:intergenic | 35.0% | |
| AAAGAATGAAGGGTAAGAAG+AGG | + | tig0006028:25849-25868 | None:intergenic | 35.0% | |
| TTACAATGCAAACCCAGAAA+AGG | + | tig0006028:26035-26054 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTTGGCAGTCTGTT+TGG | - | tig0006028:26635-26654 | Msa1342770:intron | 35.0% |
| !! | TATCATTTTGATCGCGGATA+CGG | - | tig0006028:26675-26694 | Msa1342770:intron | 35.0% |
| TTTAAGTGAAATACTGTGGC+AGG | - | tig0006028:26993-27012 | Msa1342770:intron | 35.0% | |
| TTAAGTGAAATACTGTGGCA+GGG | - | tig0006028:26994-27013 | Msa1342770:intron | 35.0% | |
| ACGTGGATCATCAAAATTCA+TGG | - | tig0006028:27068-27087 | Msa1342770:CDS | 35.0% | |
| AATAATGCTCAAGAGAATCC+AGG | - | tig0006028:27123-27142 | Msa1342770:intron | 35.0% | |
| GTTTCAGTTGAATGAAAACC+TGG | + | tig0006028:27144-27163 | None:intergenic | 35.0% | |
| GTGAAAATTCGTTACTGTGA+TGG | - | tig0006028:27274-27293 | Msa1342770:CDS | 35.0% | |
| TATTCAGGGGGAAAACAATT+AGG | + | tig0006028:27996-28015 | None:intergenic | 35.0% | |
| TACATCAACACTGTATTCAG+GGG | + | tig0006028:28009-28028 | None:intergenic | 35.0% | |
| CTACATCAACACTGTATTCA+GGG | + | tig0006028:28010-28029 | None:intergenic | 35.0% | |
| !!! | ACCCTCAGGAATTTTTTCAA+CGG | - | tig0006028:28041-28060 | Msa1342770:intron | 35.0% |
| ACCGTTGAAAAAATTCCTGA+GGG | + | tig0006028:28045-28064 | None:intergenic | 35.0% | |
| ! | AAAAAAGTGCAGTACCTGTA+GGG | + | tig0006028:28075-28094 | None:intergenic | 35.0% |
| ! | AAAAAAAGTGCAGTACCTGT+AGG | + | tig0006028:28076-28095 | None:intergenic | 35.0% |
| TCAAGTGAAAGAAAGATCCA+TGG | + | tig0006028:28121-28140 | None:intergenic | 35.0% | |
| TAATCATCTTGATCCCACTT+CGG | - | tig0006028:28320-28339 | Msa1342770:intron | 35.0% | |
| TTTGTTTCAGTGCTTCTTTC+CGG | - | tig0006028:28469-28488 | Msa1342770:CDS | 35.0% | |
| ATACTAGCAATCAAGTTCTC+CGG | + | tig0006028:28491-28510 | None:intergenic | 35.0% | |
| TCACAAATCCAATTTCTGCA+AGG | - | tig0006028:28763-28782 | Msa1342770:intron | 35.0% | |
| AAATCCAATTTCTGCAAGGT+GGG | - | tig0006028:28767-28786 | Msa1342770:intron | 35.0% | |
| TTCTCAAGATCAGGTCAAAA+TGG | - | tig0006028:28922-28941 | Msa1342770:intron | 35.0% | |
| AATATTATAGGTTTCCGTGC+TGG | - | tig0006028:29068-29087 | Msa1342770:CDS | 35.0% | |
| ! | AAATAATGGAATCGTCACTG+CGG | + | tig0006028:29257-29276 | None:intergenic | 35.0% |
| ACAATCAATGTCCTTAACAG+CGG | + | tig0006028:29456-29475 | None:intergenic | 35.0% | |
| TCTCCCTAACTACTAATTCT+TGG | + | tig0006028:29665-29684 | None:intergenic | 35.0% | |
| ! | ATTTTTACAAAGCTTGGGAG+AGG | - | tig0006028:29738-29757 | Msa1342770:exon | 35.0% |
| !! | AGATGAGCATTGATAGTGAT+TGG | - | tig0006028:29793-29812 | Msa1342770:five_prime_UTR | 35.0% |
| ACTAGAAGGGAAACATCATA+TGG | + | tig0006028:29832-29851 | None:intergenic | 35.0% | |
| TATGATGTTTCCCTTCTAGT+TGG | - | tig0006028:29832-29851 | Msa1342770:five_prime_UTR | 35.0% | |
| GAAGTCCAGAAGATAAAATG+AGG | + | tig0006028:29875-29894 | None:intergenic | 35.0% | |
| ! | CTACAAAAATTCGAAGTGTC+GGG | + | tig0006028:29920-29939 | None:intergenic | 35.0% |
| GAGAAGAGGGAGATTTAGAA+AGG | + | tig0006028:25816-25835 | None:intergenic | 40.0% | |
| AGGGAAGTAAGAAGAGAAGA+GGG | + | tig0006028:25829-25848 | None:intergenic | 40.0% | |
| ! | TAACCATGGTGAACCTTTTC+TGG | - | tig0006028:26019-26038 | Msa1342770:three_prime_UTR | 40.0% |
| ! | AACCATGGTGAACCTTTTCT+GGG | - | tig0006028:26020-26039 | Msa1342770:three_prime_UTR | 40.0% |
| !! | TAGCACTTGTTTTCACCAAC+TGG | - | tig0006028:26055-26074 | Msa1342770:three_prime_UTR | 40.0% |
| !! | AGCACTTGTTTTCACCAACT+GGG | - | tig0006028:26056-26075 | Msa1342770:three_prime_UTR | 40.0% |
| AGAAGCTTCATGAGCTTCTA+AGG | + | tig0006028:26127-26146 | None:intergenic | 40.0% | |
| AGCAGCAGCAGATTGAATAA+GGG | + | tig0006028:26193-26212 | None:intergenic | 40.0% | |
| TAGCAGCAGCAGATTGAATA+AGG | + | tig0006028:26194-26213 | None:intergenic | 40.0% | |
| ATTCAATCTGCTGCTGCTAA+AGG | - | tig0006028:26195-26214 | Msa1342770:three_prime_UTR | 40.0% | |
| !! | TTGACCAACTCAGCTTTGTT+TGG | - | tig0006028:26527-26546 | Msa1342770:intron | 40.0% |
| !! | TTTTTGGCAGTCTGTTTGGA+TGG | - | tig0006028:26639-26658 | Msa1342770:intron | 40.0% |
| !! | CCTGCTTATCATTTTGATCG+CGG | - | tig0006028:26669-26688 | Msa1342770:intron | 40.0% |
| !! | CAGCTGGCTTGTTAATTTAG+AGG | - | tig0006028:26710-26729 | Msa1342770:intron | 40.0% |
| ! | TATTCCCAATGCTACTTCCT+TGG | - | tig0006028:26944-26963 | Msa1342770:intron | 40.0% |
| TACCTTATCTTCACTATCCC+CGG | + | tig0006028:27311-27330 | None:intergenic | 40.0% | |
| ACTACATCTAACACTAGCAG+AGG | + | tig0006028:27391-27410 | None:intergenic | 40.0% | |
| AATTCAGAGGACAACGCATT+TGG | - | tig0006028:27629-27648 | Msa1342770:intron | 40.0% | |
| GTGGAGGATTTGATGTCAAA+AGG | - | tig0006028:27661-27680 | Msa1342770:intron | 40.0% | |
| ATGTATGTGTACAACCTGCT+TGG | + | tig0006028:27698-27717 | None:intergenic | 40.0% | |
| TTACACTGCGATGAATTTCG+AGG | - | tig0006028:27827-27846 | Msa1342770:intron | 40.0% | |
| AATTTCGAGGTCATTTCCCA+AGG | - | tig0006028:27840-27859 | Msa1342770:intron | 40.0% | |
| ! | ACTTCACTTTGGTAGTCCTT+GGG | + | tig0006028:27859-27878 | None:intergenic | 40.0% |
| ! | ATCACTAAGGCACTTCACTT+TGG | + | tig0006028:27870-27889 | None:intergenic | 40.0% |
| GAAATAACCCAGCATCACTA+AGG | + | tig0006028:27883-27902 | None:intergenic | 40.0% | |
| ACATCAACACTGTATTCAGG+GGG | + | tig0006028:28008-28027 | None:intergenic | 40.0% | |
| GCTACATCAACACTGTATTC+AGG | + | tig0006028:28011-28030 | None:intergenic | 40.0% | |
| !! | GAATACAGTGTTGATGTAGC+TGG | - | tig0006028:28011-28030 | Msa1342770:intron | 40.0% |
| CACCGTTGAAAAAATTCCTG+AGG | + | tig0006028:28046-28065 | None:intergenic | 40.0% | |
| !!! | AGATCATTCTGTTTTGGCCA+TGG | - | tig0006028:28101-28120 | Msa1342770:CDS | 40.0% |
| AGATGATTAGTACAAACGCG+TGG | + | tig0006028:28309-28328 | None:intergenic | 40.0% | |
| ! | ATAATTAACGACGGAGCACT+TGG | + | tig0006028:28414-28433 | None:intergenic | 40.0% |
| !! | GGAAAGAAGCACTGAAACAA+AGG | + | tig0006028:28470-28489 | None:intergenic | 40.0% |
| TTAATACTGCCTATGACTCG+TGG | - | tig0006028:28531-28550 | Msa1342770:intron | 40.0% | |
| CAAATCCAATTTCTGCAAGG+TGG | - | tig0006028:28766-28785 | Msa1342770:intron | 40.0% | |
| TACAGGATTCAGGAATCACA+TGG | - | tig0006028:28882-28901 | Msa1342770:intron | 40.0% | |
| AGTTTCACATATCCCTATGC+AGG | - | tig0006028:29036-29055 | Msa1342770:intron | 40.0% | |
| AATATAACCGCATACCAGCA+CGG | + | tig0006028:29085-29104 | None:intergenic | 40.0% | |
| CAATATGTAGGCAATTGCTC+TGG | - | tig0006028:29403-29422 | Msa1342770:intron | 40.0% | |
| CTCATCTGAAAACCAAATGG+TGG | + | tig0006028:29502-29521 | None:intergenic | 40.0% | |
| TGGCTCATCTGAAAACCAAA+TGG | + | tig0006028:29505-29524 | None:intergenic | 40.0% | |
| TGAGTGAGACTGAAGAAGTT+TGG | + | tig0006028:29525-29544 | None:intergenic | 40.0% | |
| ! | GGGTTCCTCATTTTATCTTC+TGG | - | tig0006028:29867-29886 | Msa1342770:five_prime_UTR | 40.0% |
| GAGGGAAGTAAGAAGAGAAG+AGG | + | tig0006028:25830-25849 | None:intergenic | 45.0% | |
| AACCCAGAAAAGGTTCACCA+TGG | + | tig0006028:26025-26044 | None:intergenic | 45.0% | |
| TGCATTTGCATCAACCCAGT+TGG | + | tig0006028:26073-26092 | None:intergenic | 45.0% | |
| ACAGCCAAACAAAGCTGAGT+TGG | + | tig0006028:26534-26553 | None:intergenic | 45.0% | |
| CCGCGATCAAAATGATAAGC+AGG | + | tig0006028:26672-26691 | None:intergenic | 45.0% | |
| !!! | GGGGACACACTTTTTTGTGA+AGG | - | tig0006028:26874-26893 | Msa1342770:CDS | 45.0% |
| ATGTTTGTATAGCACCGCCA+AGG | + | tig0006028:26964-26983 | None:intergenic | 45.0% | |
| TGCGATAGACGCAAGTTCTA+CGG | + | tig0006028:27038-27057 | None:intergenic | 45.0% | |
| !! | TTTTGATGATCCACGTCGTG+TGG | + | tig0006028:27064-27083 | None:intergenic | 45.0% |
| !! | TGTGATGGTGCCTCTTTTAC+CGG | - | tig0006028:27289-27308 | Msa1342770:intron | 45.0% |
| TTCACTATCCCCGGTAAAAG+AGG | + | tig0006028:27302-27321 | None:intergenic | 45.0% | |
| TACCGGGGATAGTGAAGATA+AGG | - | tig0006028:27306-27325 | Msa1342770:intron | 45.0% | |
| TTCCTTCAGGCTCTTCTTTC+TGG | - | tig0006028:27776-27795 | Msa1342770:intron | 45.0% | |
| ATCCAGAAAGAAGAGCCTGA+AGG | + | tig0006028:27781-27800 | None:intergenic | 45.0% | |
| ! | CACTTCACTTTGGTAGTCCT+TGG | + | tig0006028:27860-27879 | None:intergenic | 45.0% |
| ! | TGAAGTGCCTTAGTGATGCT+GGG | - | tig0006028:27873-27892 | Msa1342770:CDS | 45.0% |
| !! | TACAGTGTTGATGTAGCTGG+TGG | - | tig0006028:28014-28033 | Msa1342770:intron | 45.0% |
| !! | ACAGTGTTGATGTAGCTGGT+GGG | - | tig0006028:28015-28034 | Msa1342770:intron | 45.0% |
| ATGAAGGAGCTAAGCTTGAC+TGG | + | tig0006028:28684-28703 | None:intergenic | 45.0% | |
| GTCAAGCTTAGCTCCTTCAT+CGG | - | tig0006028:28684-28703 | Msa1342770:CDS | 45.0% | |
| TCAACCCACCTTGCAGAAAT+TGG | + | tig0006028:28774-28793 | None:intergenic | 45.0% | |
| CACATGGTGAATGTTGTGAG+AGG | - | tig0006028:28898-28917 | Msa1342770:intron | 45.0% | |
| ATGTGTCTTGCCTCTCAGAT+TGG | + | tig0006028:28978-28997 | None:intergenic | 45.0% | |
| AATCTGAGAGGCAAGACACA+TGG | - | tig0006028:28977-28996 | Msa1342770:intron | 45.0% | |
| CTCTCCTGTCATAGGAAACA+AGG | - | tig0006028:29011-29030 | Msa1342770:intron | 45.0% | |
| ! | CTCACCTTGTTTCCTATGAC+AGG | + | tig0006028:29018-29037 | None:intergenic | 45.0% |
| CATGTGCTATCACAAGGGTA+AGG | + | tig0006028:29479-29498 | None:intergenic | 45.0% | |
| TGATAGCACATGCCACCATT+TGG | - | tig0006028:29487-29506 | Msa1342770:intron | 45.0% | |
| !! | GTGTCGGGCTAGTTTAATTG+TGG | + | tig0006028:29905-29924 | None:intergenic | 45.0% |
| !! | TTATTATTATTTATTTATTC+AGG | + | tig0006028:29117-29136 | None:intergenic | 5.0% |
| AGGGTGATTCCAACCATGTG+AGG | + | tig0006028:26174-26193 | None:intergenic | 50.0% | |
| TTTGATCGCGGATACGGATC+CGG | - | tig0006028:26681-26700 | Msa1342770:intron | 50.0% | |
| AACAAGCCAGCTGTTTGCAC+CGG | + | tig0006028:26703-26722 | None:intergenic | 50.0% | |
| ! | TCCCAATGCTACTTCCTTGG+CGG | - | tig0006028:26947-26966 | Msa1342770:intron | 50.0% |
| ACCGCCAAGGAAGTAGCATT+GGG | + | tig0006028:26951-26970 | None:intergenic | 50.0% | |
| AGTGAAATACTGTGGCAGGG+AGG | - | tig0006028:26997-27016 | Msa1342770:CDS | 50.0% | |
| !! | GTGATGGTGCCTCTTTTACC+GGG | - | tig0006028:27290-27309 | Msa1342770:intron | 50.0% |
| !! | TGATGGTGCCTCTTTTACCG+GGG | - | tig0006028:27291-27310 | Msa1342770:intron | 50.0% |
| CAGAGGACAACGCATTTGGT+TGG | - | tig0006028:27633-27652 | Msa1342770:intron | 50.0% | |
| ! | AGGAATGCGTTTTGCCAAGC+AGG | - | tig0006028:27681-27700 | Msa1342770:intron | 50.0% |
| CTTCTTTCTGGATGCTCAGC+TGG | - | tig0006028:27788-27807 | Msa1342770:intron | 50.0% | |
| ! | GTGAAGTGCCTTAGTGATGC+TGG | - | tig0006028:27872-27891 | Msa1342770:CDS | 50.0% |
| GTTTACCTGCCACGAGTCAT+AGG | + | tig0006028:28543-28562 | None:intergenic | 50.0% | |
| GTGAGAGGCTTCTCAAGATC+AGG | - | tig0006028:28913-28932 | Msa1342770:intron | 50.0% | |
| TTGCTCACTGCCAATCTGAG+AGG | - | tig0006028:28965-28984 | Msa1342770:intron | 50.0% | |
| GCTGACAACTCTCCTGTCAT+AGG | - | tig0006028:29003-29022 | Msa1342770:intron | 50.0% | |
| ! | TAGGTTTCCGTGCTGGTATG+CGG | - | tig0006028:29075-29094 | Msa1342770:CDS | 50.0% |
| TAGGCAATTGCTCTGGCTGT+TGG | - | tig0006028:29410-29429 | Msa1342770:intron | 50.0% | |
| ! | TTTTGACCGAGCCGCTGTTA+AGG | - | tig0006028:29442-29461 | Msa1342770:intron | 50.0% |
| CAATGTCCTTAACAGCGGCT+CGG | + | tig0006028:29451-29470 | None:intergenic | 50.0% | |
| GGTGGCATGTGCTATCACAA+GGG | + | tig0006028:29484-29503 | None:intergenic | 50.0% | |
| TGGTGGCATGTGCTATCACA+AGG | + | tig0006028:29485-29504 | None:intergenic | 50.0% | |
| ACTCATCTCACTCACTCGCT+TGG | - | tig0006028:29540-29559 | Msa1342770:intron | 50.0% | |
| ACTTGTGGCTCAGCCTCACA+TGG | - | tig0006028:26158-26177 | Msa1342770:three_prime_UTR | 55.0% | |
| TCTGCTGCTGCTAAAGGAGC+TGG | - | tig0006028:26201-26220 | Msa1342770:three_prime_UTR | 55.0% | |
| CACCGCCAAGGAAGTAGCAT+TGG | + | tig0006028:26952-26971 | None:intergenic | 55.0% | |
| GAAATACTGTGGCAGGGAGG+TGG | - | tig0006028:27000-27019 | Msa1342770:CDS | 55.0% | |
| TATCGCAAGACCACACGACG+TGG | - | tig0006028:27051-27070 | Msa1342770:CDS | 55.0% | |
| GCTGCGCAGTTGCAATTCAG+AGG | - | tig0006028:27616-27635 | Msa1342770:intron | 55.0% | |
| ! | ACGCATTTGGTTGGCTGCAG+TGG | - | tig0006028:27642-27661 | Msa1342770:intron | 55.0% |
| ! | CATTTGGTTGGCTGCAGTGG+AGG | - | tig0006028:27645-27664 | Msa1342770:intron | 55.0% |
| CTTTCTGGATGCTCAGCTGG+TGG | - | tig0006028:27791-27810 | Msa1342770:intron | 55.0% | |
| !! | CAACGGTGTTGTCACCCTAC+AGG | - | tig0006028:28058-28077 | Msa1342770:intron | 55.0% |
| TACTGCCTATGACTCGTGGC+AGG | - | tig0006028:28535-28554 | Msa1342770:intron | 55.0% | |
| CAATCACGCCAATTGCCGTG+GGG | + | tig0006028:28715-28734 | None:intergenic | 55.0% | |
| GCAATCACGCCAATTGCCGT+GGG | + | tig0006028:28716-28735 | None:intergenic | 55.0% | |
| TGCAATCACGCCAATTGCCG+TGG | + | tig0006028:28717-28736 | None:intergenic | 55.0% | |
| TTGCTCTGGCTGTTGGAGAC+TGG | - | tig0006028:29417-29436 | Msa1342770:intron | 55.0% | |
| GTGGCTCAGCCTCACATGGT+TGG | - | tig0006028:26162-26181 | Msa1342770:three_prime_UTR | 60.0% | |
| ACGGATCCGGTGCAAACAGC+TGG | - | tig0006028:26694-26713 | Msa1342770:intron | 60.0% | |
| TACTGTGGCAGGGAGGTGGT+TGG | - | tig0006028:27004-27023 | Msa1342770:CDS | 60.0% | |
| ! | TAGCTGGTGGGCATACCCTC+AGG | - | tig0006028:28027-28046 | Msa1342770:intron | 60.0% |
| ACGCCAATTGCCGTGGGGAT+CGG | + | tig0006028:28710-28729 | None:intergenic | 60.0% | |
| CCTTCATCGGCCGATCCCCA+CGG | - | tig0006028:28697-28716 | Msa1342770:CDS | 65.0% | |
| CCGTGGGGATCGGCCGATGA+AGG | + | tig0006028:28700-28719 | None:intergenic | 70.0% | |
| CGGCCGATCCCCACGGCAAT+TGG | - | tig0006028:28704-28723 | Msa1342770:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006028 | gene | 25788 | 29992 | 25788 | ID=Msa1342770;Name=Msa1342770 |
| tig0006028 | mRNA | 25788 | 29992 | 25788 | ID=Msa1342770-mRNA-1;Parent=Msa1342770;Name=Msa1342770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=236|1|1|1|1|1|12|472|416 |
| tig0006028 | exon | 25788 | 26367 | 25788 | ID=Msa1342770-mRNA-1:exon:3759;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 26748 | 26893 | 26748 | ID=Msa1342770-mRNA-1:exon:3758;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 26996 | 27101 | 26996 | ID=Msa1342770-mRNA-1:exon:3757;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 27224 | 27301 | 27224 | ID=Msa1342770-mRNA-1:exon:3756;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 27439 | 27492 | 27439 | ID=Msa1342770-mRNA-1:exon:3755;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 27701 | 27761 | 27701 | ID=Msa1342770-mRNA-1:exon:3754;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 27871 | 27995 | 27871 | ID=Msa1342770-mRNA-1:exon:3753;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 28078 | 28164 | 28078 | ID=Msa1342770-mRNA-1:exon:3752;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 28453 | 28526 | 28453 | ID=Msa1342770-mRNA-1:exon:3751;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 28636 | 28765 | 28636 | ID=Msa1342770-mRNA-1:exon:3750;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 29049 | 29131 | 29049 | ID=Msa1342770-mRNA-1:exon:3749;Parent=Msa1342770-mRNA-1 |
| tig0006028 | exon | 29558 | 29992 | 29558 | ID=Msa1342770-mRNA-1:exon:3748;Parent=Msa1342770-mRNA-1 |
| tig0006028 | five_prime_UTR | 29757 | 29992 | 29757 | ID=Msa1342770-mRNA-1:five_prime_utr;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 29558 | 29756 | 29558 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 29049 | 29131 | 29049 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 28636 | 28765 | 28636 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 28453 | 28526 | 28453 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 28078 | 28164 | 28078 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 27871 | 27995 | 27871 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 27701 | 27761 | 27701 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 27439 | 27492 | 27439 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 27224 | 27301 | 27224 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 26996 | 27101 | 26996 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 26748 | 26893 | 26748 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | CDS | 26260 | 26367 | 26260 | ID=Msa1342770-mRNA-1:cds;Parent=Msa1342770-mRNA-1 |
| tig0006028 | three_prime_UTR | 25788 | 26259 | 25788 | ID=Msa1342770-mRNA-1:three_prime_utr;Parent=Msa1342770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
