Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621030 | XP_024638902.1 | 98.558 | 416 | 6 | 0 | 1 | 416 | 1 | 416 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621030 | sp|Q9SFF6|PAE12_ARATH | 69.378 | 418 | 123 | 4 | 1 | 416 | 1 | 415 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621030 | A0A396JTP5 | 98.558 | 416 | 6 | 0 | 1 | 416 | 1 | 416 | 0.0 | 859 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036820 | Msa0621030 | 0.918799 | 9.970999e-87 | -8.615850e-47 |
| Msa0081040 | Msa0621030 | 0.979079 | 3.458164e-147 | -8.615850e-47 |
| Msa0621030 | Msa1342770 | 0.978737 | 1.869629e-146 | -8.615850e-47 |
| Msa0192290 | Msa0621030 | -0.801438 | 9.004816e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621030 | MtrunA17_Chr1g0193381 | 98.558 | 416 | 6 | 0 | 1 | 416 | 1 | 416 | 0.0 | 859 |
| Msa0621030 | MtrunA17_Chr7g0271231 | 74.641 | 418 | 103 | 2 | 1 | 415 | 1 | 418 | 0.0 | 664 |
| Msa0621030 | MtrunA17_Chr7g0270931 | 71.925 | 374 | 105 | 0 | 42 | 415 | 41 | 414 | 0.0 | 600 |
| Msa0621030 | MtrunA17_Chr4g0069571 | 67.780 | 419 | 121 | 2 | 2 | 415 | 11 | 420 | 0.0 | 588 |
| Msa0621030 | MtrunA17_Chr1g0193761 | 69.867 | 375 | 113 | 0 | 42 | 416 | 29 | 403 | 0.0 | 586 |
| Msa0621030 | MtrunA17_Chr5g0408881 | 56.354 | 362 | 156 | 1 | 53 | 412 | 29 | 390 | 3.00e-159 | 456 |
| Msa0621030 | MtrunA17_Chr8g0369681 | 52.815 | 373 | 174 | 1 | 46 | 416 | 20 | 392 | 1.23e-157 | 450 |
| Msa0621030 | MtrunA17_Chr8g0369651 | 53.369 | 371 | 171 | 1 | 48 | 416 | 23 | 393 | 1.00e-155 | 445 |
| Msa0621030 | MtrunA17_Chr5g0418101 | 51.639 | 366 | 171 | 2 | 48 | 411 | 37 | 398 | 1.21e-146 | 422 |
| Msa0621030 | MtrunA17_Chr1g0203101 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 1.25e-145 | 420 |
| Msa0621030 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 2.76e-144 | 417 |
| Msa0621030 | MtrunA17_Chr7g0238491 | 50.535 | 374 | 173 | 4 | 51 | 415 | 55 | 425 | 1.06e-138 | 403 |
| Msa0621030 | MtrunA17_Chr1g0163701 | 60.194 | 103 | 41 | 0 | 233 | 335 | 270 | 372 | 1.87e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0621030 | AT3G05910.1 | 69.378 | 418 | 123 | 4 | 1 | 416 | 1 | 415 | 0.0 | 615 |
| Msa0621030 | AT5G26670.1 | 69.212 | 419 | 123 | 4 | 1 | 416 | 1 | 416 | 0.0 | 605 |
| Msa0621030 | AT1G57590.1 | 73.171 | 369 | 99 | 0 | 48 | 416 | 75 | 443 | 0.0 | 589 |
| Msa0621030 | AT3G62060.2 | 65.122 | 410 | 136 | 2 | 7 | 415 | 15 | 418 | 0.0 | 580 |
| Msa0621030 | AT3G62060.1 | 64.964 | 411 | 137 | 2 | 7 | 416 | 15 | 419 | 0.0 | 578 |
| Msa0621030 | AT2G46930.1 | 62.712 | 413 | 147 | 2 | 4 | 416 | 11 | 416 | 0.0 | 566 |
| Msa0621030 | AT5G26670.3 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 1.96e-170 | 479 |
| Msa0621030 | AT5G26670.2 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 1.96e-170 | 479 |
| Msa0621030 | AT5G26670.4 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 1.96e-170 | 479 |
| Msa0621030 | AT4G19420.1 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 3.96e-163 | 464 |
| Msa0621030 | AT4G19420.2 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 3.96e-163 | 464 |
| Msa0621030 | AT1G09550.1 | 60.350 | 343 | 135 | 1 | 52 | 394 | 41 | 382 | 4.75e-159 | 454 |
| Msa0621030 | AT4G19420.4 | 53.000 | 400 | 151 | 2 | 53 | 415 | 25 | 424 | 2.91e-156 | 448 |
| Msa0621030 | AT5G23870.1 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 2.83e-151 | 435 |
| Msa0621030 | AT5G23870.4 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 2.83e-151 | 435 |
| Msa0621030 | AT5G23870.2 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 8.27e-151 | 434 |
| Msa0621030 | AT5G23870.3 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 1.09e-150 | 435 |
| Msa0621030 | AT3G05910.2 | 66.019 | 309 | 100 | 4 | 1 | 307 | 1 | 306 | 6.71e-148 | 422 |
| Msa0621030 | AT4G19410.1 | 51.359 | 368 | 176 | 2 | 46 | 410 | 17 | 384 | 1.20e-145 | 420 |
| Msa0621030 | AT3G09410.1 | 50.402 | 373 | 182 | 1 | 46 | 415 | 54 | 426 | 1.08e-144 | 419 |
| Msa0621030 | AT5G45280.2 | 49.457 | 368 | 183 | 2 | 46 | 410 | 17 | 384 | 8.09e-143 | 412 |
| Msa0621030 | AT4G19410.2 | 50.847 | 354 | 172 | 1 | 46 | 397 | 17 | 370 | 1.16e-137 | 404 |
| Msa0621030 | AT3G09405.1 | 49.864 | 367 | 179 | 2 | 47 | 410 | 45 | 409 | 2.00e-136 | 397 |
| Msa0621030 | AT3G09410.3 | 49.412 | 340 | 169 | 1 | 46 | 382 | 54 | 393 | 9.72e-127 | 372 |
| Msa0621030 | AT5G45280.1 | 52.055 | 292 | 138 | 1 | 43 | 332 | 14 | 305 | 2.97e-116 | 344 |
| Msa0621030 | AT3G09405.2 | 50.165 | 303 | 146 | 2 | 111 | 410 | 2 | 302 | 2.21e-112 | 332 |
| Msa0621030 | AT4G19420.3 | 58.403 | 238 | 94 | 2 | 53 | 288 | 25 | 259 | 2.63e-96 | 291 |
Find 129 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCAGGCTCTTCTTTC+TGG | -0.013953 | 4_2:+72868282 | Msa0621030:intron |
| TTTATTCGATTCCAACTAAA+AGG | 0.157932 | 4_2:-72870342 | None:intergenic |
| TTCATTTCTCATCAACAATT+TGG | 0.169177 | 4_2:+72870064 | Msa0621030:three_prime_UTR |
| TCAACCCACCTTGCAGAAAT+TGG | 0.177359 | 4_2:-72869273 | None:intergenic |
| TTATTACAATGTATATATTT+TGG | 0.192930 | 4_2:-72870270 | None:intergenic |
| TTTAGTTGGAATCGAATAAA+AGG | 0.198903 | 4_2:+72870345 | Msa0621030:three_prime_UTR |
| TTTGTTTCAGTGCTTCTTTC+CGG | 0.212409 | 4_2:+72868974 | Msa0621030:intron |
| TTGCTTAATATTCCAGTAAA+AGG | 0.219538 | 4_2:-72867608 | None:intergenic |
| TCTCCCTAACTACTAATTCT+TGG | 0.240653 | 4_2:-72870161 | None:intergenic |
| TAGCAGCAGCAGATTGAATA+AGG | 0.246442 | 4_2:-72866696 | None:intergenic |
| AGAAGCTTCATGAGCTTCTA+AGG | 0.265076 | 4_2:-72866629 | None:intergenic |
| GTGAACCAGAACATTTATTA+TGG | 0.270304 | 4_2:-72869246 | None:intergenic |
| CAGCTGGCTTGTTAATTTAG+AGG | 0.278550 | 4_2:+72867216 | Msa0621030:CDS |
| CTAGTTTAATTGTGGTAATA+TGG | 0.292476 | 4_2:-72870393 | None:intergenic |
| TCCTCACTAAATACTAATTA+AGG | 0.308311 | 4_2:-72866394 | None:intergenic |
| CTTCTTTCTGGATGCTCAGC+TGG | 0.328684 | 4_2:+72868294 | Msa0621030:CDS |
| CACTTCACTTTGGTAGTCCT+TGG | 0.337219 | 4_2:-72868363 | None:intergenic |
| TTAAACCATAATAAATGTTC+TGG | 0.344297 | 4_2:+72869241 | Msa0621030:CDS |
| TTCTCAAGATCAGGTCAAAA+TGG | 0.355306 | 4_2:+72869424 | Msa0621030:CDS |
| CGGCCGATCCCCACGGCAAT+TGG | 0.361858 | 4_2:+72869206 | Msa0621030:CDS |
| TAAAATCTGATACAGGATTC+AGG | 0.362095 | 4_2:+72869374 | Msa0621030:intron |
| TTATGTATAGATCAATTAGT+TGG | 0.402375 | 4_2:+72870191 | Msa0621030:three_prime_UTR |
| TGAGTGAGACTGAAGAAGTT+TGG | 0.409862 | 4_2:-72870023 | None:intergenic |
| AATTCAGAGGACAACGCATT+TGG | 0.411794 | 4_2:+72868135 | Msa0621030:CDS |
| GTTTACCTGCCACGAGTCAT+AGG | 0.421718 | 4_2:-72869045 | None:intergenic |
| TATGTATAGATCAATTAGTT+GGG | 0.425796 | 4_2:+72870192 | Msa0621030:three_prime_UTR |
| ACGTGGATCATCAAAGTTCA+TGG | 0.433128 | 4_2:+72867574 | Msa0621030:CDS |
| AGGACAATGTATGTGTTTGC+CGG | 0.437599 | 4_2:-72866285 | None:intergenic |
| TGATAGCACATGCCACCATT+TGG | 0.437780 | 4_2:+72869988 | Msa0621030:CDS |
| GCTGACAACTCTCCTGTCAT+AGG | 0.444782 | 4_2:+72869505 | Msa0621030:CDS |
| TAACTACTAATTCTTGGAAA+AGG | 0.447014 | 4_2:-72870155 | None:intergenic |
| AGGGAGATTTAGAAAGGAAC+AGG | 0.448807 | 4_2:-72866305 | None:intergenic |
| TTTCCAAGAATTAGTAGTTA+GGG | 0.455512 | 4_2:+72870158 | Msa0621030:three_prime_UTR |
| TGGTTTATAGTAAGGAAAGA+AGG | 0.457626 | 4_2:-72866428 | None:intergenic |
| ATTCAATCTGCTGCTGCTAA+AGG | 0.458885 | 4_2:+72866700 | Msa0621030:CDS |
| ACTTCACTTTGGTAGTCCTT+GGG | 0.459019 | 4_2:-72868362 | None:intergenic |
| ACTAAAAGGGAAACATCATA+TGG | 0.460892 | 4_2:-72870328 | None:intergenic |
| TACCTTATCTTCACTATCCC+CGG | 0.462721 | 4_2:-72867814 | None:intergenic |
| ACGCCAATTGCCGTGGGGAT+CGG | 0.463148 | 4_2:-72869209 | None:intergenic |
| TGCGATAGACGCAAGTTCTA+CGG | 0.464930 | 4_2:-72867541 | None:intergenic |
| ATGAAGGAGCTAAGCTTGAC+TGG | 0.465960 | 4_2:-72869183 | None:intergenic |
| TTGCTCTGGCTGTTGGAGAC+TGG | 0.473165 | 4_2:+72869918 | Msa0621030:CDS |
| CAACGGTGTTGTCACCCTAC+AGG | 0.473602 | 4_2:+72868564 | Msa0621030:CDS |
| GTGAGAGGCTTCTCAAGATC+AGG | 0.473932 | 4_2:+72869415 | Msa0621030:CDS |
| TTAATATTAATAAAGAATGA+AGG | 0.474822 | 4_2:-72866354 | None:intergenic |
| AGAAGAAGGAAGAGAAGAAG+AGG | 0.474987 | 4_2:-72866325 | None:intergenic |
| GAAGAAGGAAGAGAAGAAGA+GGG | 0.479734 | 4_2:-72866324 | None:intergenic |
| TTATTCGATTCCAACTAAAA+GGG | 0.480232 | 4_2:-72870341 | None:intergenic |
| ACGCATTTGGTTGGCTGCAG+TGG | 0.483484 | 4_2:+72868148 | Msa0621030:CDS |
| ATCACTAAGGCACTTCACTT+TGG | 0.485245 | 4_2:-72868373 | None:intergenic |
| TTAGTTGGAATCGAATAAAA+GGG | 0.485388 | 4_2:+72870346 | Msa0621030:three_prime_UTR |
| GTGAAGTGCCTTAGTGATGC+TGG | 0.487536 | 4_2:+72868378 | Msa0621030:CDS |
| TAGCTGGTGGGCATACCCTC+AGG | 0.487893 | 4_2:+72868533 | Msa0621030:CDS |
| GTGGAGGATTTGATGTCAAA+AGG | 0.488280 | 4_2:+72868167 | Msa0621030:CDS |
| ACGGATCCGGTGCAAACAGC+TGG | 0.489904 | 4_2:+72867200 | Msa0621030:CDS |
| CTCACCTTGTTTCCTATGAC+AGG | 0.490925 | 4_2:-72869517 | None:intergenic |
| CCGTGGGGATCGGCCGATGA+AGG | 0.493491 | 4_2:-72869199 | None:intergenic |
| TTTGATCGCGGATACGGATC+CGG | 0.495604 | 4_2:+72867187 | Msa0621030:CDS |
| TACCGGGGATAGTGAAGATA+AGG | 0.496636 | 4_2:+72867812 | Msa0621030:CDS |
| ACTCATCTCACTCACTCGCT+TGG | 0.503810 | 4_2:+72870041 | Msa0621030:three_prime_UTR |
| CAGAGGACAACGCATTTGGT+TGG | 0.504022 | 4_2:+72868139 | Msa0621030:CDS |
| TAGGCAATTGCTCTGGCTGT+TGG | 0.506232 | 4_2:+72869911 | Msa0621030:intron |
| GGACAATGTATGTGTTTGCC+GGG | 0.508933 | 4_2:-72866284 | None:intergenic |
| TTCACTATCCCCGGTAAAAG+AGG | 0.509811 | 4_2:-72867805 | None:intergenic |
| AAGAAGAGGGAGATTTAGAA+AGG | 0.509858 | 4_2:-72866311 | None:intergenic |
| CAGTATTAAGAATGAATAGC+GGG | 0.512415 | 4_2:-72869022 | None:intergenic |
| ACTTGTGGCTCAGCCTCACA+TGG | 0.512424 | 4_2:+72866663 | Msa0621030:CDS |
| GGTTTATAGTAAGGAAAGAA+GGG | 0.513567 | 4_2:-72866427 | None:intergenic |
| AGCAGCAGCAGATTGAATAA+GGG | 0.515953 | 4_2:-72866695 | None:intergenic |
| ATGTGTCTTGCCTCTCAGAT+TGG | 0.519666 | 4_2:-72869477 | None:intergenic |
| ATACTAGCAATCAAGTTCTC+CGG | 0.520958 | 4_2:-72868993 | None:intergenic |
| CATTTGGTTGGCTGCAGTGG+AGG | 0.521238 | 4_2:+72868151 | Msa0621030:CDS |
| AATGAAGGGTAAGAAGAAGA+AGG | 0.524545 | 4_2:-72866339 | None:intergenic |
| TTACACTGCGATGAATTTCG+AGG | 0.526633 | 4_2:+72868333 | Msa0621030:CDS |
| GAAATAACCCAGCATCACTA+AGG | 0.526893 | 4_2:-72868386 | None:intergenic |
| CCGCGATCAAAATGATAAGC+AGG | 0.530290 | 4_2:-72867175 | None:intergenic |
| TTACAATGCAAACCCAGAAA+AGG | 0.531063 | 4_2:-72866537 | None:intergenic |
| CTTTCTGGATGCTCAGCTGG+TGG | 0.531189 | 4_2:+72868297 | Msa0621030:CDS |
| TGCAATCACGCCAATTGCCG+TGG | 0.532481 | 4_2:-72869216 | None:intergenic |
| AACAAGCCAGCTGTTTGCAC+CGG | 0.541065 | 4_2:-72867206 | None:intergenic |
| TACTGCCTATGACTCGTGGC+AGG | 0.541796 | 4_2:+72869040 | Msa0621030:CDS |
| TGGCTCATCTGAAAACCAAA+TGG | 0.544159 | 4_2:-72870003 | None:intergenic |
| AATAATGCTCAAGAGAATCC+AGG | 0.544827 | 4_2:+72867629 | Msa0621030:CDS |
| CTCTCCTGTCATAGGAAACA+AGG | 0.552688 | 4_2:+72869513 | Msa0621030:CDS |
| AGATAAATTATTACCGAAGT+GGG | 0.554113 | 4_2:-72868840 | None:intergenic |
| TGCATTTGCATCAACCCAGT+TGG | 0.557817 | 4_2:-72866575 | None:intergenic |
| TCTGCTGCTGCTAAAGGAGC+TGG | 0.564131 | 4_2:+72866706 | Msa0621030:CDS |
| GCAATCACGCCAATTGCCGT+GGG | 0.571050 | 4_2:-72869215 | None:intergenic |
| AATTTCGAGGTCATTTCCCA+AGG | 0.572709 | 4_2:+72868346 | Msa0621030:CDS |
| GTGGCTCAGCCTCACATGGT+TGG | 0.572897 | 4_2:+72866667 | Msa0621030:CDS |
| TAATATTAATAAAGAATGAA+GGG | 0.575654 | 4_2:-72866353 | None:intergenic |
| GAGATAAATTATTACCGAAG+TGG | 0.579597 | 4_2:-72868841 | None:intergenic |
| GAATACAGTGTTGATGTAGC+TGG | 0.581901 | 4_2:+72868517 | Msa0621030:intron |
| CAATATGTAGGCAATTGCTC+TGG | 0.584344 | 4_2:+72869904 | Msa0621030:intron |
| GTGTCGGGCTAGTTTAATTG+TGG | 0.585821 | 4_2:-72870401 | None:intergenic |
| GAAATACTGTGGCAGGGAGG+TGG | 0.587258 | 4_2:+72867506 | Msa0621030:intron |
| GAAGTCCAGAAGATAAAATG+AGG | 0.591146 | 4_2:-72870371 | None:intergenic |
| TCCTTAATTAGTATTTAGTG+AGG | 0.596583 | 4_2:+72866393 | Msa0621030:five_prime_UTR |
| CATGTGCTATCACAAGGGTA+AGG | 0.597112 | 4_2:-72869977 | None:intergenic |
| CCTTCATCGGCCGATCCCCA+CGG | 0.597346 | 4_2:+72869199 | Msa0621030:CDS |
| GTGAAAATTCGTTACTGTGA+TGG | 0.602298 | 4_2:+72867780 | Msa0621030:CDS |
| CAATGTCCTTAACAGCGGCT+CGG | 0.605068 | 4_2:-72869949 | None:intergenic |
| TACTGTGGCAGGGAGGTGGT+TGG | 0.606796 | 4_2:+72867510 | Msa0621030:intron |
| TGGTGGCATGTGCTATCACA+AGG | 0.607600 | 4_2:-72869983 | None:intergenic |
| AATCTGAGAGGCAAGACACA+TGG | 0.627362 | 4_2:+72869479 | Msa0621030:CDS |
| TAATCATCTTGATCCCACTT+CGG | 0.628050 | 4_2:+72868827 | Msa0621030:CDS |
| GTCAAGCTTAGCTCCTTCAT+CGG | 0.630234 | 4_2:+72869186 | Msa0621030:CDS |
| TCACAAATCCAATTTCTGCA+AGG | 0.632203 | 4_2:+72869265 | Msa0621030:CDS |
| TGAAGTGCCTTAGTGATGCT+GGG | 0.640149 | 4_2:+72868379 | Msa0621030:CDS |
| ATGTATGTGTACAACCTGCT+TGG | 0.643481 | 4_2:-72868201 | None:intergenic |
| AGGGTGATTCCAACCATGTG+AGG | 0.644329 | 4_2:-72866676 | None:intergenic |
| TTAATACTGCCTATGACTCG+TGG | 0.644352 | 4_2:+72869036 | Msa0621030:CDS |
| GCTGCGCAGTTGCAATTCAG+AGG | 0.649968 | 4_2:+72868122 | Msa0621030:CDS |
| TTGCTCACTGCCAATCTGAG+AGG | 0.650325 | 4_2:+72869467 | Msa0621030:CDS |
| CTCATCTGAAAACCAAATGG+TGG | 0.655239 | 4_2:-72870000 | None:intergenic |
| TTAGAAAGAAACAATAACCA+TGG | 0.656885 | 4_2:+72866510 | Msa0621030:exon |
| GTGAAAGAAACAAAACACAA+AGG | 0.660481 | 4_2:-72866469 | None:intergenic |
| AGATGATTAGTACAAACGCG+TGG | 0.666672 | 4_2:-72868813 | None:intergenic |
| TACAGGATTCAGGAATCACA+TGG | 0.672670 | 4_2:+72869384 | Msa0621030:intron |
| GCAGTATTAAGAATGAATAG+CGG | 0.673265 | 4_2:-72869023 | None:intergenic |
| TATCGCAAGACAACACGACG+TGG | 0.673334 | 4_2:+72867557 | Msa0621030:CDS |
| TACAGTGTTGATGTAGCTGG+TGG | 0.678330 | 4_2:+72868520 | Msa0621030:intron |
| CACATGGTGAATGTTGTGAG+AGG | 0.686276 | 4_2:+72869400 | Msa0621030:CDS |
| ACAATCAATGTCCTTAACAG+CGG | 0.695254 | 4_2:-72869954 | None:intergenic |
| AACCCAGAAAAGGTTCACCA+TGG | 0.700911 | 4_2:-72866527 | None:intergenic |
| CAATCACGCCAATTGCCGTG+GGG | 0.703508 | 4_2:-72869214 | None:intergenic |
| ACAGTGTTGATGTAGCTGGT+GGG | 0.721028 | 4_2:+72868521 | Msa0621030:intron |
| AGTATTAAGAATGAATAGCG+GGG | 0.730636 | 4_2:-72869021 | None:intergenic |
| GGTGGCATGTGCTATCACAA+GGG | 0.739938 | 4_2:-72869982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTAATTAATATA+TGG | + | chr4_2:72867264-72867283 | Msa0621030:intron | 0.0% |
| !! | TAATATTAATAAAGAATGAA+GGG | - | chr4_2:72866356-72866375 | None:intergenic | 10.0% |
| !! | TTAATATTAATAAAGAATGA+AGG | - | chr4_2:72866357-72866376 | None:intergenic | 10.0% |
| !!! | ATACTTAATTAATTTGTTTT+TGG | + | chr4_2:72867129-72867148 | Msa0621030:intron | 10.0% |
| !!! | TTATTACAATGTATATATTT+TGG | - | chr4_2:72870273-72870292 | None:intergenic | 10.0% |
| !!! | AAATTTTTTGGTTTATAGTA+AGG | - | chr4_2:72866439-72866458 | None:intergenic | 15.0% |
| !!! | AACATTTTTTATAACAAAGA+AGG | - | chr4_2:72866748-72866767 | None:intergenic | 15.0% |
| !!! | AACAATTAGGAATTAATTTT+AGG | - | chr4_2:72868489-72868508 | None:intergenic | 15.0% |
| !! | ATCATAAAATACGATTTATT+CGG | - | chr4_2:72869100-72869119 | None:intergenic | 15.0% |
| !! | AGGTTTAGTTAAAATATTAT+AGG | + | chr4_2:72869558-72869577 | Msa0621030:intron | 15.0% |
| !!! | TGAGTTAAAGATTTCTTTTT+TGG | - | chr4_2:72867068-72867087 | None:intergenic | 20.0% |
| !! | TTTACAATATGAACATATTG+AGG | - | chr4_2:72867303-72867322 | None:intergenic | 20.0% |
| !! | TCAATATGTTCATATTGTAA+AGG | + | chr4_2:72867302-72867321 | Msa0621030:intron | 20.0% |
| !! | TAAAAAAATCTGCAATCATA+CGG | - | chr4_2:72867749-72867768 | None:intergenic | 20.0% |
| !! | AAATCATGTGATAATAATGA+TGG | - | chr4_2:72868461-72868480 | None:intergenic | 20.0% |
| !! | AGGAAAAAGATATTACTAAA+AGG | - | chr4_2:72868955-72868974 | None:intergenic | 20.0% |
| !!! | TAAACATCTTATTTCTAACT+CGG | + | chr4_2:72869063-72869082 | Msa0621030:intron | 20.0% |
| !! | TTAAACCATAATAAATGTTC+TGG | + | chr4_2:72869241-72869260 | Msa0621030:CDS | 20.0% |
| !! | ATTTAACTAAAATCTGATAC+AGG | + | chr4_2:72869367-72869386 | Msa0621030:intron | 20.0% |
| !!! | GAATATTTTATAGCAAAAAC+AGG | - | chr4_2:72869665-72869684 | None:intergenic | 20.0% |
| !!! | TTTGCTATAAAATATTCACA+TGG | + | chr4_2:72869668-72869687 | Msa0621030:intron | 20.0% |
| !! | TTATGTATAGATCAATTAGT+TGG | + | chr4_2:72870191-72870210 | Msa0621030:three_prime_UTR | 20.0% |
| !! | TATGTATAGATCAATTAGTT+GGG | + | chr4_2:72870192-72870211 | Msa0621030:three_prime_UTR | 20.0% |
| !!! | AAGCTTTGTAAAAATCAAAA+GGG | - | chr4_2:72870232-72870251 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTTACAAAGCTT+GGG | + | chr4_2:72870232-72870251 | Msa0621030:three_prime_UTR | 20.0% |
| ! | TCCTTAATTAGTATTTAGTG+AGG | + | chr4_2:72866393-72866412 | Msa0621030:five_prime_UTR | 25.0% |
| ! | TCCTCACTAAATACTAATTA+AGG | - | chr4_2:72866397-72866416 | None:intergenic | 25.0% |
| ! | TTAGAAAGAAACAATAACCA+TGG | + | chr4_2:72866510-72866529 | Msa0621030:exon | 25.0% |
| ! | ATAACAAAGAAGGTTAGAAA+TGG | - | chr4_2:72866738-72866757 | None:intergenic | 25.0% |
| !!! | TAAATCTGTAGCTTTTGATT+TGG | + | chr4_2:72867094-72867113 | Msa0621030:intron | 25.0% |
| !!! | TTCTTAGTTTAAAGTGTTGT+TGG | + | chr4_2:72867359-72867378 | Msa0621030:intron | 25.0% |
| !!! | TCTTAGTTTAAAGTGTTGTT+GGG | + | chr4_2:72867360-72867379 | Msa0621030:intron | 25.0% |
| ! | GATATTTAAGTGAAATACTG+TGG | + | chr4_2:72867495-72867514 | Msa0621030:intron | 25.0% |
| ! | TTGCTTAATATTCCAGTAAA+AGG | - | chr4_2:72867611-72867630 | None:intergenic | 25.0% |
| ! | TACTCAAATTATGCTGAAAA+AGG | + | chr4_2:72867694-72867713 | Msa0621030:intron | 25.0% |
| !!! | AAAGGATTTGCTTAACTTTT+TGG | + | chr4_2:72867712-72867731 | Msa0621030:intron | 25.0% |
| !!! | TGATTGCAGATTTTTTTAAC+TGG | + | chr4_2:72867751-72867770 | Msa0621030:intron | 25.0% |
| ! | ATAGCCAACTTTATTCATTA+AGG | + | chr4_2:72867856-72867875 | Msa0621030:intron | 25.0% |
| ! | GAAACCTTAATGAATAAAGT+TGG | - | chr4_2:72867863-72867882 | None:intergenic | 25.0% |
| ! | TTATTCATTAAGGTTTCCAT+AGG | + | chr4_2:72867866-72867885 | Msa0621030:intron | 25.0% |
| ! | TGTTTGTTTGATTGAAAGTT+AGG | + | chr4_2:72867938-72867957 | Msa0621030:intron | 25.0% |
| ! | TTAGTCGATCTATTTAATGT+AGG | + | chr4_2:72868055-72868074 | Msa0621030:intron | 25.0% |
| ! | TAGTCGATCTATTTAATGTA+GGG | + | chr4_2:72868056-72868075 | Msa0621030:intron | 25.0% |
| ! | ACAGATAATATTCAGAAATC+AGG | - | chr4_2:72868094-72868113 | None:intergenic | 25.0% |
| ! | TGAATATTATCTGTTGACAT+AGG | + | chr4_2:72868100-72868119 | Msa0621030:intron | 25.0% |
| ! | TAGAATGAAATACTGAAGTT+AGG | - | chr4_2:72868426-72868445 | None:intergenic | 25.0% |
| !! | TGTGATAATAATGATGGAAA+TGG | - | chr4_2:72868455-72868474 | None:intergenic | 25.0% |
| !!! | TACTGCACTTTTTTTTTCTT+GGG | + | chr4_2:72868587-72868606 | Msa0621030:intron | 25.0% |
| ! | CACATGCTAAATAGTTTATA+TGG | + | chr4_2:72868686-72868705 | Msa0621030:intron | 25.0% |
| ! | AGTTTATATGGCTTAAAACT+TGG | + | chr4_2:72868698-72868717 | Msa0621030:intron | 25.0% |
| ! | TAACCTTATATAAAGCATGA+TGG | + | chr4_2:72868739-72868758 | Msa0621030:intron | 25.0% |
| ! | AGATAAATTATTACCGAAGT+GGG | - | chr4_2:72868843-72868862 | None:intergenic | 25.0% |
| ! | GTTTCATTTGAATGAATTTG+AGG | + | chr4_2:72868889-72868908 | Msa0621030:intron | 25.0% |
| ! | ATCTGAACAATAATTAACGA+TGG | - | chr4_2:72868928-72868947 | None:intergenic | 25.0% |
| !! | AAATCGTATTTTATGATCTG+TGG | + | chr4_2:72869103-72869122 | Msa0621030:intron | 25.0% |
| !!! | ATTTTAACTAAACCTGCATA+GGG | - | chr4_2:72869553-72869572 | None:intergenic | 25.0% |
| !!! | TATTTTAACTAAACCTGCAT+AGG | - | chr4_2:72869554-72869573 | None:intergenic | 25.0% |
| ! | TTCACATGGAGAAAAATTAT+AGG | + | chr4_2:72869682-72869701 | Msa0621030:intron | 25.0% |
| ! | TACATATTGTCAATGCATAA+GGG | - | chr4_2:72869893-72869912 | None:intergenic | 25.0% |
| ! | TTCATTTCTCATCAACAATT+TGG | + | chr4_2:72870064-72870083 | Msa0621030:three_prime_UTR | 25.0% |
| ! | TAACTACTAATTCTTGGAAA+AGG | - | chr4_2:72870158-72870177 | None:intergenic | 25.0% |
| !! | TTTTCCAAGAATTAGTAGTT+AGG | + | chr4_2:72870157-72870176 | Msa0621030:three_prime_UTR | 25.0% |
| ! | TTTCCAAGAATTAGTAGTTA+GGG | + | chr4_2:72870158-72870177 | Msa0621030:three_prime_UTR | 25.0% |
| !! | CAAGCTTTGTAAAAATCAAA+AGG | - | chr4_2:72870233-72870252 | None:intergenic | 25.0% |
| !!! | CTTTTGATTTTTACAAAGCT+TGG | + | chr4_2:72870231-72870250 | Msa0621030:three_prime_UTR | 25.0% |
| ! | TTATTCGATTCCAACTAAAA+GGG | - | chr4_2:72870344-72870363 | None:intergenic | 25.0% |
| ! | TTTATTCGATTCCAACTAAA+AGG | - | chr4_2:72870345-72870364 | None:intergenic | 25.0% |
| ! | TTTAGTTGGAATCGAATAAA+AGG | + | chr4_2:72870345-72870364 | Msa0621030:three_prime_UTR | 25.0% |
| ! | TTAGTTGGAATCGAATAAAA+GGG | + | chr4_2:72870346-72870365 | Msa0621030:three_prime_UTR | 25.0% |
| ! | CTAGTTTAATTGTGGTAATA+TGG | - | chr4_2:72870396-72870415 | None:intergenic | 25.0% |
| GGTTTATAGTAAGGAAAGAA+GGG | - | chr4_2:72866430-72866449 | None:intergenic | 30.0% | |
| TGGTTTATAGTAAGGAAAGA+AGG | - | chr4_2:72866431-72866450 | None:intergenic | 30.0% | |
| !!! | GGTGCAAAATGCAAATTTTT+TGG | - | chr4_2:72866451-72866470 | None:intergenic | 30.0% |
| GTGAAAGAAACAAAACACAA+AGG | - | chr4_2:72866472-72866491 | None:intergenic | 30.0% | |
| ! | TTCTTCTTTTTCTTCACTTG+TGG | + | chr4_2:72866648-72866667 | Msa0621030:CDS | 30.0% |
| TTTCAGCAACAAAACTTCAA+AGG | - | chr4_2:72866941-72866960 | None:intergenic | 30.0% | |
| ATACATAACATGGCAAATTG+GGG | - | chr4_2:72866989-72867008 | None:intergenic | 30.0% | |
| CATACATAACATGGCAAATT+GGG | - | chr4_2:72866990-72867009 | None:intergenic | 30.0% | |
| ACATACATAACATGGCAAAT+TGG | - | chr4_2:72866991-72867010 | None:intergenic | 30.0% | |
| TCACATTCACATACATAACA+TGG | - | chr4_2:72866999-72867018 | None:intergenic | 30.0% | |
| !! | CTTAGTTTAAAGTGTTGTTG+GGG | + | chr4_2:72867361-72867380 | Msa0621030:intron | 30.0% |
| ! | AGCAATACATGACATGTTTT+TGG | - | chr4_2:72867414-72867433 | None:intergenic | 30.0% |
| AACTGTATGAATGATGCATA+AGG | + | chr4_2:72867989-72868008 | Msa0621030:intron | 30.0% | |
| ! | TTTACAACTTTGTTTCCTTC+AGG | + | chr4_2:72868269-72868288 | Msa0621030:intron | 30.0% |
| !!! | GTACTGCACTTTTTTTTTCT+TGG | + | chr4_2:72868586-72868605 | Msa0621030:intron | 30.0% |
| CAACCATCATGCTTTATATA+AGG | - | chr4_2:72868745-72868764 | None:intergenic | 30.0% | |
| !! | TATATTTTTGCACTCATTGC+AGG | + | chr4_2:72868773-72868792 | Msa0621030:intron | 30.0% |
| !! | ATATTTTTGCACTCATTGCA+GGG | + | chr4_2:72868774-72868793 | Msa0621030:intron | 30.0% |
| GAGATAAATTATTACCGAAG+TGG | - | chr4_2:72868844-72868863 | None:intergenic | 30.0% | |
| AGTATTAAGAATGAATAGCG+GGG | - | chr4_2:72869024-72869043 | None:intergenic | 30.0% | |
| CAGTATTAAGAATGAATAGC+GGG | - | chr4_2:72869025-72869044 | None:intergenic | 30.0% | |
| GCAGTATTAAGAATGAATAG+CGG | - | chr4_2:72869026-72869045 | None:intergenic | 30.0% | |
| AATACGATTTATTCGGAGTT+TGG | - | chr4_2:72869093-72869112 | None:intergenic | 30.0% | |
| GTGAACCAGAACATTTATTA+TGG | - | chr4_2:72869249-72869268 | None:intergenic | 30.0% | |
| TAAAATCTGATACAGGATTC+AGG | + | chr4_2:72869374-72869393 | Msa0621030:intron | 30.0% | |
| ! | AAATAATGGAATCATCACTG+CGG | - | chr4_2:72869758-72869777 | None:intergenic | 30.0% |
| AGCAGTGTCATGAAAAATAA+TGG | - | chr4_2:72869772-72869791 | None:intergenic | 30.0% | |
| CTACATATTGTCAATGCATA+AGG | - | chr4_2:72869894-72869913 | None:intergenic | 30.0% | |
| ! | CTTATGCATTGACAATATGT+AGG | + | chr4_2:72869892-72869911 | Msa0621030:intron | 30.0% |
| ACTAAAAGGGAAACATCATA+TGG | - | chr4_2:72870331-72870350 | None:intergenic | 30.0% | |
| ! | TATGATGTTTCCCTTTTAGT+TGG | + | chr4_2:72870331-72870350 | Msa0621030:three_prime_UTR | 30.0% |
| TCTACAAAAATTCGAAGTGT+CGG | - | chr4_2:72870420-72870439 | None:intergenic | 30.0% | |
| AAGAAGAGGGAGATTTAGAA+AGG | - | chr4_2:72866314-72866333 | None:intergenic | 35.0% | |
| AATGAAGGGTAAGAAGAAGA+AGG | - | chr4_2:72866342-72866361 | None:intergenic | 35.0% | |
| TTACAATGCAAACCCAGAAA+AGG | - | chr4_2:72866540-72866559 | None:intergenic | 35.0% | |
| TACATAACATGGCAAATTGG+GGG | - | chr4_2:72866988-72867007 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTTGGCAGTCTGTT+TGG | + | chr4_2:72867141-72867160 | Msa0621030:intron | 35.0% |
| !! | TATCATTTTGATCGCGGATA+CGG | + | chr4_2:72867181-72867200 | Msa0621030:CDS | 35.0% |
| AGGATGACAAGTCTTTCTAT+TGG | + | chr4_2:72867322-72867341 | Msa0621030:intron | 35.0% | |
| TTTAAGTGAAATACTGTGGC+AGG | + | chr4_2:72867499-72867518 | Msa0621030:intron | 35.0% | |
| TTAAGTGAAATACTGTGGCA+GGG | + | chr4_2:72867500-72867519 | Msa0621030:intron | 35.0% | |
| ! | GAAAAAGCGATACCTTTTAC+TGG | + | chr4_2:72867596-72867615 | Msa0621030:CDS | 35.0% |
| AATAATGCTCAAGAGAATCC+AGG | + | chr4_2:72867629-72867648 | Msa0621030:CDS | 35.0% | |
| GTTTCAGTTGAATGAAAACC+TGG | - | chr4_2:72867650-72867669 | None:intergenic | 35.0% | |
| GTGAAAATTCGTTACTGTGA+TGG | + | chr4_2:72867780-72867799 | Msa0621030:CDS | 35.0% | |
| TATTCAGGGGGAAAACAATT+AGG | - | chr4_2:72868502-72868521 | None:intergenic | 35.0% | |
| TACATCAACACTGTATTCAG+GGG | - | chr4_2:72868515-72868534 | None:intergenic | 35.0% | |
| CTACATCAACACTGTATTCA+GGG | - | chr4_2:72868516-72868535 | None:intergenic | 35.0% | |
| !!! | ACCCTCAGGAATTTTTTCAA+CGG | + | chr4_2:72868547-72868566 | Msa0621030:CDS | 35.0% |
| ACCGTTGAAAAAATTCCTGA+GGG | - | chr4_2:72868551-72868570 | None:intergenic | 35.0% | |
| ! | AAAAAAGTGCAGTACCTGTA+GGG | - | chr4_2:72868581-72868600 | None:intergenic | 35.0% |
| ! | AAAAAAAGTGCAGTACCTGT+AGG | - | chr4_2:72868582-72868601 | None:intergenic | 35.0% |
| ! | TTCTTGGGATCATTCTGTTT+TGG | + | chr4_2:72868602-72868621 | Msa0621030:intron | 35.0% |
| TCAAGTGAAAGAAAGATCCA+TGG | - | chr4_2:72868628-72868647 | None:intergenic | 35.0% | |
| TGGCTTAAAACTTGGTCATT+TGG | + | chr4_2:72868706-72868725 | Msa0621030:intron | 35.0% | |
| TAAAACTTGGTCATTTGGCA+TGG | + | chr4_2:72868711-72868730 | Msa0621030:intron | 35.0% | |
| TAATCATCTTGATCCCACTT+CGG | + | chr4_2:72868827-72868846 | Msa0621030:CDS | 35.0% | |
| ! | ATAATTAACGATGGAGCACT+TGG | - | chr4_2:72868919-72868938 | None:intergenic | 35.0% |
| TTTGTTTCAGTGCTTCTTTC+CGG | + | chr4_2:72868974-72868993 | Msa0621030:intron | 35.0% | |
| ATACTAGCAATCAAGTTCTC+CGG | - | chr4_2:72868996-72869015 | None:intergenic | 35.0% | |
| TCACAAATCCAATTTCTGCA+AGG | + | chr4_2:72869265-72869284 | Msa0621030:CDS | 35.0% | |
| AAATCCAATTTCTGCAAGGT+GGG | + | chr4_2:72869269-72869288 | Msa0621030:intron | 35.0% | |
| TTCTCAAGATCAGGTCAAAA+TGG | + | chr4_2:72869424-72869443 | Msa0621030:CDS | 35.0% | |
| AATATTATAGGTTTCCGTGC+TGG | + | chr4_2:72869570-72869589 | Msa0621030:intron | 35.0% | |
| ACAATCAATGTCCTTAACAG+CGG | - | chr4_2:72869957-72869976 | None:intergenic | 35.0% | |
| TCTCCCTAACTACTAATTCT+TGG | - | chr4_2:72870164-72870183 | None:intergenic | 35.0% | |
| ! | ATTTTTACAAAGCTTGGGAG+AGG | + | chr4_2:72870237-72870256 | Msa0621030:three_prime_UTR | 35.0% |
| GAAGTCCAGAAGATAAAATG+AGG | - | chr4_2:72870374-72870393 | None:intergenic | 35.0% | |
| ! | CTACAAAAATTCGAAGTGTC+GGG | - | chr4_2:72870419-72870438 | None:intergenic | 35.0% |
| AGGGAGATTTAGAAAGGAAC+AGG | - | chr4_2:72866308-72866327 | None:intergenic | 40.0% | |
| GAAGAAGGAAGAGAAGAAGA+GGG | - | chr4_2:72866327-72866346 | None:intergenic | 40.0% | |
| AGAAGAAGGAAGAGAAGAAG+AGG | - | chr4_2:72866328-72866347 | None:intergenic | 40.0% | |
| ! | TAACCATGGTGAACCTTTTC+TGG | + | chr4_2:72866524-72866543 | Msa0621030:exon | 40.0% |
| ! | AACCATGGTGAACCTTTTCT+GGG | + | chr4_2:72866525-72866544 | Msa0621030:exon | 40.0% |
| !! | TAGCACTTGTTTTCACCAAC+TGG | + | chr4_2:72866560-72866579 | Msa0621030:CDS | 40.0% |
| !! | AGCACTTGTTTTCACCAACT+GGG | + | chr4_2:72866561-72866580 | Msa0621030:CDS | 40.0% |
| AGAAGCTTCATGAGCTTCTA+AGG | - | chr4_2:72866632-72866651 | None:intergenic | 40.0% | |
| AGCAGCAGCAGATTGAATAA+GGG | - | chr4_2:72866698-72866717 | None:intergenic | 40.0% | |
| TAGCAGCAGCAGATTGAATA+AGG | - | chr4_2:72866699-72866718 | None:intergenic | 40.0% | |
| ATTCAATCTGCTGCTGCTAA+AGG | + | chr4_2:72866700-72866719 | Msa0621030:CDS | 40.0% | |
| !! | TTGACCAACTCAGCTTTGTT+TGG | + | chr4_2:72867033-72867052 | Msa0621030:intron | 40.0% |
| !! | TTTTTGGCAGTCTGTTTGGA+TGG | + | chr4_2:72867145-72867164 | Msa0621030:intron | 40.0% |
| !! | CCTGCTTATCATTTTGATCG+CGG | + | chr4_2:72867175-72867194 | Msa0621030:CDS | 40.0% |
| !! | CAGCTGGCTTGTTAATTTAG+AGG | + | chr4_2:72867216-72867235 | Msa0621030:CDS | 40.0% |
| ACGTGGATCATCAAAGTTCA+TGG | + | chr4_2:72867574-72867593 | Msa0621030:CDS | 40.0% | |
| TACCTTATCTTCACTATCCC+CGG | - | chr4_2:72867817-72867836 | None:intergenic | 40.0% | |
| ACTACATCTAACACTAGCAG+AGG | - | chr4_2:72867897-72867916 | None:intergenic | 40.0% | |
| AATTCAGAGGACAACGCATT+TGG | + | chr4_2:72868135-72868154 | Msa0621030:CDS | 40.0% | |
| GTGGAGGATTTGATGTCAAA+AGG | + | chr4_2:72868167-72868186 | Msa0621030:CDS | 40.0% | |
| ATGTATGTGTACAACCTGCT+TGG | - | chr4_2:72868204-72868223 | None:intergenic | 40.0% | |
| TTACACTGCGATGAATTTCG+AGG | + | chr4_2:72868333-72868352 | Msa0621030:CDS | 40.0% | |
| AATTTCGAGGTCATTTCCCA+AGG | + | chr4_2:72868346-72868365 | Msa0621030:CDS | 40.0% | |
| ! | ACTTCACTTTGGTAGTCCTT+GGG | - | chr4_2:72868365-72868384 | None:intergenic | 40.0% |
| ! | ATCACTAAGGCACTTCACTT+TGG | - | chr4_2:72868376-72868395 | None:intergenic | 40.0% |
| GAAATAACCCAGCATCACTA+AGG | - | chr4_2:72868389-72868408 | None:intergenic | 40.0% | |
| ACATCAACACTGTATTCAGG+GGG | - | chr4_2:72868514-72868533 | None:intergenic | 40.0% | |
| GCTACATCAACACTGTATTC+AGG | - | chr4_2:72868517-72868536 | None:intergenic | 40.0% | |
| !! | GAATACAGTGTTGATGTAGC+TGG | + | chr4_2:72868517-72868536 | Msa0621030:intron | 40.0% |
| CACCGTTGAAAAAATTCCTG+AGG | - | chr4_2:72868552-72868571 | None:intergenic | 40.0% | |
| AGATGATTAGTACAAACGCG+TGG | - | chr4_2:72868816-72868835 | None:intergenic | 40.0% | |
| !! | GGAAAGAAGCACTGAAACAA+AGG | - | chr4_2:72868975-72868994 | None:intergenic | 40.0% |
| TTAATACTGCCTATGACTCG+TGG | + | chr4_2:72869036-72869055 | Msa0621030:CDS | 40.0% | |
| CAAATCCAATTTCTGCAAGG+TGG | + | chr4_2:72869268-72869287 | Msa0621030:intron | 40.0% | |
| TACAGGATTCAGGAATCACA+TGG | + | chr4_2:72869384-72869403 | Msa0621030:intron | 40.0% | |
| AGTTTCACATATCCCTATGC+AGG | + | chr4_2:72869538-72869557 | Msa0621030:intron | 40.0% | |
| AATATAACCGCATACCAGCA+CGG | - | chr4_2:72869587-72869606 | None:intergenic | 40.0% | |
| CAATATGTAGGCAATTGCTC+TGG | + | chr4_2:72869904-72869923 | Msa0621030:intron | 40.0% | |
| CTCATCTGAAAACCAAATGG+TGG | - | chr4_2:72870003-72870022 | None:intergenic | 40.0% | |
| TGGCTCATCTGAAAACCAAA+TGG | - | chr4_2:72870006-72870025 | None:intergenic | 40.0% | |
| TGAGTGAGACTGAAGAAGTT+TGG | - | chr4_2:72870026-72870045 | None:intergenic | 40.0% | |
| ! | GGGTTCCTCATTTTATCTTC+TGG | + | chr4_2:72870366-72870385 | Msa0621030:three_prime_UTR | 40.0% |
| AACCCAGAAAAGGTTCACCA+TGG | - | chr4_2:72866530-72866549 | None:intergenic | 45.0% | |
| TGCATTTGCATCAACCCAGT+TGG | - | chr4_2:72866578-72866597 | None:intergenic | 45.0% | |
| ACAGCCAAACAAAGCTGAGT+TGG | - | chr4_2:72867040-72867059 | None:intergenic | 45.0% | |
| CCGCGATCAAAATGATAAGC+AGG | - | chr4_2:72867178-72867197 | None:intergenic | 45.0% | |
| !!! | GGGGACACACTTTTTTGTGA+AGG | + | chr4_2:72867380-72867399 | Msa0621030:intron | 45.0% |
| TATTCCCAACGCTACTTCCT+CGG | + | chr4_2:72867450-72867469 | Msa0621030:intron | 45.0% | |
| TGCGATAGACGCAAGTTCTA+CGG | - | chr4_2:72867544-72867563 | None:intergenic | 45.0% | |
| !! | TGTGATGGTGCCTCTTTTAC+CGG | + | chr4_2:72867795-72867814 | Msa0621030:CDS | 45.0% |
| TTCACTATCCCCGGTAAAAG+AGG | - | chr4_2:72867808-72867827 | None:intergenic | 45.0% | |
| TACCGGGGATAGTGAAGATA+AGG | + | chr4_2:72867812-72867831 | Msa0621030:CDS | 45.0% | |
| ! | ACTAGCAGAGGTGTAACCTA+TGG | - | chr4_2:72867885-72867904 | None:intergenic | 45.0% |
| TTCCTTCAGGCTCTTCTTTC+TGG | + | chr4_2:72868282-72868301 | Msa0621030:intron | 45.0% | |
| ATCCAGAAAGAAGAGCCTGA+AGG | - | chr4_2:72868287-72868306 | None:intergenic | 45.0% | |
| ! | CACTTCACTTTGGTAGTCCT+TGG | - | chr4_2:72868366-72868385 | None:intergenic | 45.0% |
| ! | TGAAGTGCCTTAGTGATGCT+GGG | + | chr4_2:72868379-72868398 | Msa0621030:CDS | 45.0% |
| !! | TACAGTGTTGATGTAGCTGG+TGG | + | chr4_2:72868520-72868539 | Msa0621030:intron | 45.0% |
| !! | ACAGTGTTGATGTAGCTGGT+GGG | + | chr4_2:72868521-72868540 | Msa0621030:intron | 45.0% |
| !!! | GGATCATTCTGTTTTGGCCA+TGG | + | chr4_2:72868608-72868627 | Msa0621030:intron | 45.0% |
| ATGAAGGAGCTAAGCTTGAC+TGG | - | chr4_2:72869186-72869205 | None:intergenic | 45.0% | |
| GTCAAGCTTAGCTCCTTCAT+CGG | + | chr4_2:72869186-72869205 | Msa0621030:CDS | 45.0% | |
| TCAACCCACCTTGCAGAAAT+TGG | - | chr4_2:72869276-72869295 | None:intergenic | 45.0% | |
| CACATGGTGAATGTTGTGAG+AGG | + | chr4_2:72869400-72869419 | Msa0621030:CDS | 45.0% | |
| ATGTGTCTTGCCTCTCAGAT+TGG | - | chr4_2:72869480-72869499 | None:intergenic | 45.0% | |
| AATCTGAGAGGCAAGACACA+TGG | + | chr4_2:72869479-72869498 | Msa0621030:CDS | 45.0% | |
| CTCTCCTGTCATAGGAAACA+AGG | + | chr4_2:72869513-72869532 | Msa0621030:CDS | 45.0% | |
| ! | CTCACCTTGTTTCCTATGAC+AGG | - | chr4_2:72869520-72869539 | None:intergenic | 45.0% |
| CATGTGCTATCACAAGGGTA+AGG | - | chr4_2:72869980-72869999 | None:intergenic | 45.0% | |
| TGATAGCACATGCCACCATT+TGG | + | chr4_2:72869988-72870007 | Msa0621030:CDS | 45.0% | |
| !! | GTGTCGGGCTAGTTTAATTG+TGG | - | chr4_2:72870404-72870423 | None:intergenic | 45.0% |
| !! | AATTAATTATCAATTAAAAA+TGG | + | chr4_2:72866892-72866911 | Msa0621030:intron | 5.0% |
| !! | TTATTATTATTTATTTATTC+AGG | - | chr4_2:72869619-72869638 | None:intergenic | 5.0% |
| AGGGTGATTCCAACCATGTG+AGG | - | chr4_2:72866679-72866698 | None:intergenic | 50.0% | |
| TTTGATCGCGGATACGGATC+CGG | + | chr4_2:72867187-72867206 | Msa0621030:CDS | 50.0% | |
| AACAAGCCAGCTGTTTGCAC+CGG | - | chr4_2:72867209-72867228 | None:intergenic | 50.0% | |
| ATGTTTGTATAGCACCGCCG+AGG | - | chr4_2:72867470-72867489 | None:intergenic | 50.0% | |
| AGTGAAATACTGTGGCAGGG+AGG | + | chr4_2:72867503-72867522 | Msa0621030:intron | 50.0% | |
| TATCGCAAGACAACACGACG+TGG | + | chr4_2:72867557-72867576 | Msa0621030:CDS | 50.0% | |
| !! | GTGATGGTGCCTCTTTTACC+GGG | + | chr4_2:72867796-72867815 | Msa0621030:CDS | 50.0% |
| !! | TGATGGTGCCTCTTTTACCG+GGG | + | chr4_2:72867797-72867816 | Msa0621030:CDS | 50.0% |
| CAGAGGACAACGCATTTGGT+TGG | + | chr4_2:72868139-72868158 | Msa0621030:CDS | 50.0% | |
| ! | AGGAATGCGTTTTGCCAAGC+AGG | + | chr4_2:72868187-72868206 | Msa0621030:CDS | 50.0% |
| CTTCTTTCTGGATGCTCAGC+TGG | + | chr4_2:72868294-72868313 | Msa0621030:CDS | 50.0% | |
| ! | GTGAAGTGCCTTAGTGATGC+TGG | + | chr4_2:72868378-72868397 | Msa0621030:CDS | 50.0% |
| GTTTACCTGCCACGAGTCAT+AGG | - | chr4_2:72869048-72869067 | None:intergenic | 50.0% | |
| GTGAGAGGCTTCTCAAGATC+AGG | + | chr4_2:72869415-72869434 | Msa0621030:CDS | 50.0% | |
| TTGCTCACTGCCAATCTGAG+AGG | + | chr4_2:72869467-72869486 | Msa0621030:CDS | 50.0% | |
| GCTGACAACTCTCCTGTCAT+AGG | + | chr4_2:72869505-72869524 | Msa0621030:CDS | 50.0% | |
| ! | TAGGTTTCCGTGCTGGTATG+CGG | + | chr4_2:72869577-72869596 | Msa0621030:intron | 50.0% |
| TAGGCAATTGCTCTGGCTGT+TGG | + | chr4_2:72869911-72869930 | Msa0621030:intron | 50.0% | |
| ! | TTTTGACCGAGCCGCTGTTA+AGG | + | chr4_2:72869943-72869962 | Msa0621030:CDS | 50.0% |
| CAATGTCCTTAACAGCGGCT+CGG | - | chr4_2:72869952-72869971 | None:intergenic | 50.0% | |
| GGTGGCATGTGCTATCACAA+GGG | - | chr4_2:72869985-72870004 | None:intergenic | 50.0% | |
| TGGTGGCATGTGCTATCACA+AGG | - | chr4_2:72869986-72870005 | None:intergenic | 50.0% | |
| ACTCATCTCACTCACTCGCT+TGG | + | chr4_2:72870041-72870060 | Msa0621030:three_prime_UTR | 50.0% | |
| ACTTGTGGCTCAGCCTCACA+TGG | + | chr4_2:72866663-72866682 | Msa0621030:CDS | 55.0% | |
| TCTGCTGCTGCTAAAGGAGC+TGG | + | chr4_2:72866706-72866725 | Msa0621030:CDS | 55.0% | |
| GAAATACTGTGGCAGGGAGG+TGG | + | chr4_2:72867506-72867525 | Msa0621030:intron | 55.0% | |
| GCTGCGCAGTTGCAATTCAG+AGG | + | chr4_2:72868122-72868141 | Msa0621030:CDS | 55.0% | |
| ! | ACGCATTTGGTTGGCTGCAG+TGG | + | chr4_2:72868148-72868167 | Msa0621030:CDS | 55.0% |
| ! | CATTTGGTTGGCTGCAGTGG+AGG | + | chr4_2:72868151-72868170 | Msa0621030:CDS | 55.0% |
| CTTTCTGGATGCTCAGCTGG+TGG | + | chr4_2:72868297-72868316 | Msa0621030:CDS | 55.0% | |
| !! | CAACGGTGTTGTCACCCTAC+AGG | + | chr4_2:72868564-72868583 | Msa0621030:CDS | 55.0% |
| TACTGCCTATGACTCGTGGC+AGG | + | chr4_2:72869040-72869059 | Msa0621030:CDS | 55.0% | |
| CAATCACGCCAATTGCCGTG+GGG | - | chr4_2:72869217-72869236 | None:intergenic | 55.0% | |
| GCAATCACGCCAATTGCCGT+GGG | - | chr4_2:72869218-72869237 | None:intergenic | 55.0% | |
| TGCAATCACGCCAATTGCCG+TGG | - | chr4_2:72869219-72869238 | None:intergenic | 55.0% | |
| TTGCTCTGGCTGTTGGAGAC+TGG | + | chr4_2:72869918-72869937 | Msa0621030:CDS | 55.0% | |
| GTGGCTCAGCCTCACATGGT+TGG | + | chr4_2:72866667-72866686 | Msa0621030:CDS | 60.0% | |
| ACGGATCCGGTGCAAACAGC+TGG | + | chr4_2:72867200-72867219 | Msa0621030:CDS | 60.0% | |
| TCCCAACGCTACTTCCTCGG+CGG | + | chr4_2:72867453-72867472 | Msa0621030:intron | 60.0% | |
| ACCGCCGAGGAAGTAGCGTT+GGG | - | chr4_2:72867457-72867476 | None:intergenic | 60.0% | |
| TACTGTGGCAGGGAGGTGGT+TGG | + | chr4_2:72867510-72867529 | Msa0621030:intron | 60.0% | |
| ! | TAGCTGGTGGGCATACCCTC+AGG | + | chr4_2:72868533-72868552 | Msa0621030:CDS | 60.0% |
| ACGCCAATTGCCGTGGGGAT+CGG | - | chr4_2:72869212-72869231 | None:intergenic | 60.0% | |
| CACCGCCGAGGAAGTAGCGT+TGG | - | chr4_2:72867458-72867477 | None:intergenic | 65.0% | |
| CCTTCATCGGCCGATCCCCA+CGG | + | chr4_2:72869199-72869218 | Msa0621030:CDS | 65.0% | |
| CCGTGGGGATCGGCCGATGA+AGG | - | chr4_2:72869202-72869221 | None:intergenic | 70.0% | |
| CGGCCGATCCCCACGGCAAT+TGG | + | chr4_2:72869206-72869225 | Msa0621030:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 72866286 | 72870491 | 72866286 | ID=Msa0621030;Name=Msa0621030 |
| chr4_2 | mRNA | 72866286 | 72870491 | 72866286 | ID=Msa0621030-mRNA-1;Parent=Msa0621030;Name=Msa0621030-mRNA-1;_AED=0.11;_eAED=0.11;_QI=243|1|1|1|1|1|12|470|416 |
| chr4_2 | exon | 72866286 | 72866727 | 72866286 | ID=Msa0621030-mRNA-1:exon:21795;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72867155 | 72867237 | 72867155 | ID=Msa0621030-mRNA-1:exon:21796;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72867521 | 72867650 | 72867521 | ID=Msa0621030-mRNA-1:exon:21797;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72867760 | 72867833 | 72867760 | ID=Msa0621030-mRNA-1:exon:21798;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72868122 | 72868208 | 72868122 | ID=Msa0621030-mRNA-1:exon:21799;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72868291 | 72868415 | 72868291 | ID=Msa0621030-mRNA-1:exon:21800;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72868525 | 72868585 | 72868525 | ID=Msa0621030-mRNA-1:exon:21801;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72868795 | 72868848 | 72868795 | ID=Msa0621030-mRNA-1:exon:21802;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72868984 | 72869061 | 72868984 | ID=Msa0621030-mRNA-1:exon:21803;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72869181 | 72869286 | 72869181 | ID=Msa0621030-mRNA-1:exon:21804;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72869389 | 72869534 | 72869389 | ID=Msa0621030-mRNA-1:exon:21805;Parent=Msa0621030-mRNA-1 |
| chr4_2 | exon | 72869914 | 72870491 | 72869914 | ID=Msa0621030-mRNA-1:exon:21806;Parent=Msa0621030-mRNA-1 |
| chr4_2 | five_prime_UTR | 72866286 | 72866528 | 72866286 | ID=Msa0621030-mRNA-1:five_prime_utr;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72866529 | 72866727 | 72866529 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72867155 | 72867237 | 72867155 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72867521 | 72867650 | 72867521 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72867760 | 72867833 | 72867760 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72868122 | 72868208 | 72868122 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72868291 | 72868415 | 72868291 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72868525 | 72868585 | 72868525 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72868795 | 72868848 | 72868795 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72868984 | 72869061 | 72868984 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72869181 | 72869286 | 72869181 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72869389 | 72869534 | 72869389 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | CDS | 72869914 | 72870021 | 72869914 | ID=Msa0621030-mRNA-1:cds;Parent=Msa0621030-mRNA-1 |
| chr4_2 | three_prime_UTR | 72870022 | 72870491 | 72870022 | ID=Msa0621030-mRNA-1:three_prime_utr;Parent=Msa0621030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
