Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036820 | sp|Q9SFF6|PAE12_ARATH | 69.139 | 418 | 124 | 4 | 1 | 416 | 1 | 415 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036820 | Msa0081040 | 0.916887 | 1.036077e-85 | -8.615850e-47 |
| Msa0036820 | Msa0223500 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0036820 | Msa0295030 | 0.811258 | 7.660821e-51 | -8.615850e-47 |
| Msa0036820 | Msa0621030 | 0.918799 | 9.970999e-87 | -8.615850e-47 |
| Msa0036820 | Msa1342770 | 0.922537 | 8.642952e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036820 | MtrunA17_Chr1g0193381 | 98.317 | 416 | 7 | 0 | 1 | 416 | 1 | 416 | 0.0 | 857 |
| Msa0036820 | MtrunA17_Chr7g0271231 | 74.641 | 418 | 103 | 2 | 1 | 415 | 1 | 418 | 0.0 | 664 |
| Msa0036820 | MtrunA17_Chr7g0270931 | 71.925 | 374 | 105 | 0 | 42 | 415 | 41 | 414 | 0.0 | 600 |
| Msa0036820 | MtrunA17_Chr4g0069571 | 67.542 | 419 | 122 | 2 | 2 | 415 | 11 | 420 | 0.0 | 586 |
| Msa0036820 | MtrunA17_Chr1g0193761 | 69.867 | 375 | 113 | 0 | 42 | 416 | 29 | 403 | 0.0 | 585 |
| Msa0036820 | MtrunA17_Chr5g0408881 | 56.354 | 362 | 156 | 1 | 53 | 412 | 29 | 390 | 3.95e-159 | 456 |
| Msa0036820 | MtrunA17_Chr8g0369681 | 52.815 | 373 | 174 | 1 | 46 | 416 | 20 | 392 | 2.55e-157 | 449 |
| Msa0036820 | MtrunA17_Chr8g0369651 | 53.369 | 371 | 171 | 1 | 48 | 416 | 23 | 393 | 1.77e-155 | 444 |
| Msa0036820 | MtrunA17_Chr5g0418101 | 51.639 | 366 | 171 | 2 | 48 | 411 | 37 | 398 | 2.34e-146 | 422 |
| Msa0036820 | MtrunA17_Chr1g0203101 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 2.07e-145 | 420 |
| Msa0036820 | MtrunA17_Chr1g0203121 | 54.223 | 367 | 163 | 3 | 53 | 414 | 39 | 405 | 6.18e-144 | 416 |
| Msa0036820 | MtrunA17_Chr7g0238491 | 50.535 | 374 | 173 | 4 | 51 | 415 | 55 | 425 | 1.53e-138 | 402 |
| Msa0036820 | MtrunA17_Chr1g0163701 | 60.194 | 103 | 41 | 0 | 233 | 335 | 270 | 372 | 1.92e-36 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036820 | AT3G05910.1 | 69.139 | 418 | 124 | 4 | 1 | 416 | 1 | 415 | 0.0 | 614 |
| Msa0036820 | AT5G26670.1 | 69.212 | 419 | 123 | 4 | 1 | 416 | 1 | 416 | 0.0 | 605 |
| Msa0036820 | AT1G57590.1 | 73.442 | 369 | 98 | 0 | 48 | 416 | 75 | 443 | 0.0 | 590 |
| Msa0036820 | AT3G62060.2 | 65.122 | 410 | 136 | 2 | 7 | 415 | 15 | 418 | 0.0 | 579 |
| Msa0036820 | AT3G62060.1 | 64.964 | 411 | 137 | 2 | 7 | 416 | 15 | 419 | 0.0 | 578 |
| Msa0036820 | AT2G46930.1 | 62.712 | 413 | 147 | 2 | 4 | 416 | 11 | 416 | 0.0 | 566 |
| Msa0036820 | AT5G26670.3 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 2.50e-170 | 479 |
| Msa0036820 | AT5G26670.2 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 2.50e-170 | 479 |
| Msa0036820 | AT5G26670.4 | 73.826 | 298 | 78 | 0 | 119 | 416 | 1 | 298 | 2.50e-170 | 479 |
| Msa0036820 | AT4G19420.1 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 5.80e-163 | 464 |
| Msa0036820 | AT4G19420.2 | 58.082 | 365 | 151 | 1 | 53 | 415 | 25 | 389 | 5.80e-163 | 464 |
| Msa0036820 | AT1G09550.1 | 60.350 | 343 | 135 | 1 | 52 | 394 | 41 | 382 | 6.88e-159 | 453 |
| Msa0036820 | AT4G19420.4 | 53.000 | 400 | 151 | 2 | 53 | 415 | 25 | 424 | 3.75e-156 | 448 |
| Msa0036820 | AT5G23870.1 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 6.33e-151 | 434 |
| Msa0036820 | AT5G23870.4 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 6.33e-151 | 434 |
| Msa0036820 | AT5G23870.2 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 1.35e-150 | 434 |
| Msa0036820 | AT5G23870.3 | 54.620 | 368 | 161 | 4 | 53 | 414 | 35 | 402 | 1.84e-150 | 434 |
| Msa0036820 | AT3G05910.2 | 66.019 | 309 | 100 | 4 | 1 | 307 | 1 | 306 | 6.29e-148 | 422 |
| Msa0036820 | AT4G19410.1 | 51.359 | 368 | 176 | 2 | 46 | 410 | 17 | 384 | 1.62e-145 | 419 |
| Msa0036820 | AT3G09410.1 | 50.402 | 373 | 182 | 1 | 46 | 415 | 54 | 426 | 1.76e-144 | 418 |
| Msa0036820 | AT5G45280.2 | 49.457 | 368 | 183 | 2 | 46 | 410 | 17 | 384 | 1.17e-142 | 412 |
| Msa0036820 | AT4G19410.2 | 50.847 | 354 | 172 | 1 | 46 | 397 | 17 | 370 | 1.52e-137 | 404 |
| Msa0036820 | AT3G09405.1 | 49.864 | 367 | 179 | 2 | 47 | 410 | 45 | 409 | 4.06e-136 | 396 |
| Msa0036820 | AT3G09410.3 | 49.412 | 340 | 169 | 1 | 46 | 382 | 54 | 393 | 1.77e-126 | 371 |
| Msa0036820 | AT5G45280.1 | 52.055 | 292 | 138 | 1 | 43 | 332 | 14 | 305 | 2.66e-116 | 344 |
| Msa0036820 | AT3G09405.2 | 50.165 | 303 | 146 | 2 | 111 | 410 | 2 | 302 | 3.90e-112 | 331 |
| Msa0036820 | AT4G19420.3 | 58.403 | 238 | 94 | 2 | 53 | 288 | 25 | 259 | 2.69e-96 | 291 |
Find 130 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCAGGCTCTTCTTTC+TGG | -0.013953 | 1_1:-65631376 | Msa0036820:intron |
| TCAACCCACCTTGCAGAAAT+TGG | 0.177359 | 1_1:+65630381 | None:intergenic |
| TCTAGTTGGAATCGAATAAA+AGG | 0.185475 | 1_1:-65629306 | Msa0036820:three_prime_UTR |
| TTATTACAATGTATATATTT+TGG | 0.192930 | 1_1:+65629381 | None:intergenic |
| TTTGTTTCAGTGCTTCTTTC+CGG | 0.212409 | 1_1:-65630683 | Msa0036820:intron |
| TTGCTTAATATTCCAGTAAA+AGG | 0.219538 | 1_1:+65632050 | None:intergenic |
| TCTCCCTAACTACTAATTCT+TGG | 0.240653 | 1_1:+65629490 | None:intergenic |
| AGAAGCTTCATGAGCTTCTA+AGG | 0.265076 | 1_1:+65633111 | None:intergenic |
| GTGAACCAGAACATTTATTA+TGG | 0.270304 | 1_1:+65630408 | None:intergenic |
| CAGCTGGCTTGTTAATTTAG+AGG | 0.278550 | 1_1:-65632542 | Msa0036820:intron |
| CTAGTTTAATTGTGGTAATA+TGG | 0.292476 | 1_1:+65629258 | None:intergenic |
| TTTATTCGATTCCAACTAGA+AGG | 0.305485 | 1_1:+65629309 | None:intergenic |
| TCCTCACTAAATACTAATTA+AGG | 0.308311 | 1_1:+65633335 | None:intergenic |
| TAGCAGCAGCAGATTGAATC+AGG | 0.324410 | 1_1:+65633044 | None:intergenic |
| CTTCTTTCTGGATGCTCAGC+TGG | 0.328684 | 1_1:-65631364 | Msa0036820:CDS |
| CACTTCACTTTGGTAGTCCT+TGG | 0.337219 | 1_1:+65631295 | None:intergenic |
| TTAAACCATAATAAATGTTC+TGG | 0.344297 | 1_1:-65630413 | Msa0036820:CDS |
| TTCTCAAGATCAGGTCAAAA+TGG | 0.355306 | 1_1:-65630230 | Msa0036820:CDS |
| CGGCCGATCCCCACGGCAAT+TGG | 0.361858 | 1_1:-65630448 | Msa0036820:CDS |
| TAAAATCTGATACAGGATTC+AGG | 0.362095 | 1_1:-65630280 | Msa0036820:intron |
| TTCATTTCTCATCAACAATT+CGG | 0.363972 | 1_1:-65629589 | Msa0036820:three_prime_UTR |
| TTATGTATAGATCAATTAGT+TGG | 0.402375 | 1_1:-65629460 | Msa0036820:three_prime_UTR |
| TGAGTGAGACTGAAGAAGTT+TGG | 0.409862 | 1_1:+65629630 | None:intergenic |
| AATTCAGAGGACAACGCATT+TGG | 0.411794 | 1_1:-65631523 | Msa0036820:CDS |
| GTTTACCTGCCACGAGTCAT+AGG | 0.421718 | 1_1:+65630612 | None:intergenic |
| TATGATGTTTCCCTTCTAGT+TGG | 0.422993 | 1_1:-65629320 | Msa0036820:three_prime_UTR |
| TATGTATAGATCAATTAGTT+GGG | 0.425796 | 1_1:-65629459 | Msa0036820:three_prime_UTR |
| ACGTGGATCATCAAAGTTCA+TGG | 0.433128 | 1_1:-65632084 | Msa0036820:CDS |
| AGATGAGCATTGATAGTGAT+TGG | 0.434460 | 1_1:-65629359 | Msa0036820:three_prime_UTR |
| AGGACAATGTATGTGTTTGC+CGG | 0.437599 | 1_1:+65633444 | None:intergenic |
| TGATAGCACATGCCACCATT+TGG | 0.437780 | 1_1:-65629665 | Msa0036820:CDS |
| TTGGTTTATAGTAGGAAAGA+AGG | 0.441666 | 1_1:+65633301 | None:intergenic |
| GCTGACAACTCTCCTGTCAT+AGG | 0.444782 | 1_1:-65630149 | Msa0036820:CDS |
| TAACTACTAATTCTTGGAAA+AGG | 0.447014 | 1_1:+65629496 | None:intergenic |
| AGGGAGATTTAGAAAGGAAC+AGG | 0.448807 | 1_1:+65633424 | None:intergenic |
| TTTCCAAGAATTAGTAGTTA+GGG | 0.455512 | 1_1:-65629493 | Msa0036820:three_prime_UTR |
| ATTCAATCTGCTGCTGCTAA+AGG | 0.458885 | 1_1:-65633040 | Msa0036820:CDS |
| ACTTCACTTTGGTAGTCCTT+GGG | 0.459019 | 1_1:+65631296 | None:intergenic |
| GTGAGAGGCTTCTCAAGATC+AGG | 0.462560 | 1_1:-65630239 | Msa0036820:CDS |
| ACGCCAATTGCCGTGGGGAT+CGG | 0.463148 | 1_1:+65630445 | None:intergenic |
| TGCGATAGACGCAAGTTCTA+CGG | 0.464930 | 1_1:+65632117 | None:intergenic |
| ATGAAGGAGCTAAGCTTGAC+TGG | 0.465960 | 1_1:+65630471 | None:intergenic |
| TTCACTATCCCCTGTAAAAG+AGG | 0.470777 | 1_1:+65631853 | None:intergenic |
| TTGCTCTGGCTGTTGGAGAC+TGG | 0.473165 | 1_1:-65629735 | Msa0036820:CDS |
| CAACGGTGTTGTCACCCTAC+AGG | 0.473602 | 1_1:-65631094 | Msa0036820:intron |
| TTAATATTAATAAAGAATGA+AGG | 0.474822 | 1_1:+65633375 | None:intergenic |
| AGAAGAAGGAAGAGAAGAAG+AGG | 0.474987 | 1_1:+65633404 | None:intergenic |
| TACAGGGGATAGTGAAGATA+AGG | 0.477374 | 1_1:-65631846 | Msa0036820:intron |
| GAAGAAGGAAGAGAAGAAGA+GGG | 0.479734 | 1_1:+65633405 | None:intergenic |
| ACGCATTTGGTTGGCTGCAG+TGG | 0.483484 | 1_1:-65631510 | Msa0036820:CDS |
| ATCACTAAGGCACTTCACTT+TGG | 0.485245 | 1_1:+65631285 | None:intergenic |
| GTGAAGTGCCTTAGTGATGC+TGG | 0.487536 | 1_1:-65631280 | Msa0036820:CDS |
| TAGCTGGTGGGCATACCCTC+AGG | 0.487893 | 1_1:-65631125 | Msa0036820:CDS |
| GTGGAGGATTTGATGTCAAA+AGG | 0.488280 | 1_1:-65631491 | Msa0036820:CDS |
| ACTAGAAGGGAAACATCATA+TGG | 0.489575 | 1_1:+65629323 | None:intergenic |
| ACGGATCCGGTGCAAACAGC+TGG | 0.489904 | 1_1:-65632558 | Msa0036820:CDS |
| CTCACCTTGTTTCCTATGAC+AGG | 0.490925 | 1_1:+65630137 | None:intergenic |
| CCGTGGGGATCGGCCGATGA+AGG | 0.493491 | 1_1:+65630455 | None:intergenic |
| CTAGTTGGAATCGAATAAAA+GGG | 0.493956 | 1_1:-65629305 | Msa0036820:three_prime_UTR |
| TTTGATCGCGGATACGGATC+CGG | 0.495604 | 1_1:-65632571 | Msa0036820:CDS |
| ACTCATCTCACTCACTCGCT+TGG | 0.503810 | 1_1:-65629612 | Msa0036820:three_prime_UTR |
| CAGAGGACAACGCATTTGGT+TGG | 0.504022 | 1_1:-65631519 | Msa0036820:CDS |
| TAGGCAATTGCTCTGGCTGT+TGG | 0.506232 | 1_1:-65629742 | Msa0036820:CDS |
| TGGTTTATAGTAGGAAAGAA+GGG | 0.508233 | 1_1:+65633302 | None:intergenic |
| GGACAATGTATGTGTTTGCC+GGG | 0.508933 | 1_1:+65633445 | None:intergenic |
| AAGAAGAGGGAGATTTAGAA+AGG | 0.509858 | 1_1:+65633418 | None:intergenic |
| CAGTATTAAGAATGAATAGC+GGG | 0.512415 | 1_1:+65630635 | None:intergenic |
| ACTTGTGGCTCAGCCTCACA+TGG | 0.512424 | 1_1:-65633077 | Msa0036820:CDS |
| ATGTGTCTTGCCTCTCAGAT+TGG | 0.519666 | 1_1:+65630177 | None:intergenic |
| ATACTAGCAATCAAGTTCTC+CGG | 0.520958 | 1_1:+65630664 | None:intergenic |
| CATTTGGTTGGCTGCAGTGG+AGG | 0.521238 | 1_1:-65631507 | Msa0036820:CDS |
| AATGAAGGGTAAGAAGAAGA+AGG | 0.524545 | 1_1:+65633390 | None:intergenic |
| TTACACTGCGATGAATTTCG+AGG | 0.526633 | 1_1:-65631325 | Msa0036820:CDS |
| GAAATAACCCAGCATCACTA+AGG | 0.526893 | 1_1:+65631272 | None:intergenic |
| CCGCGATCAAAATGATAAGC+AGG | 0.530290 | 1_1:+65632583 | None:intergenic |
| TTACAATGCAAACCCAGAAA+AGG | 0.531063 | 1_1:+65633203 | None:intergenic |
| CTTTCTGGATGCTCAGCTGG+TGG | 0.531189 | 1_1:-65631361 | Msa0036820:CDS |
| TGCAATCACGCCAATTGCCG+TGG | 0.532481 | 1_1:+65630438 | None:intergenic |
| AACAAGCCAGCTGTTTGCAC+CGG | 0.541065 | 1_1:+65632552 | None:intergenic |
| TACTGCCTATGACTCGTGGC+AGG | 0.541796 | 1_1:-65630617 | Msa0036820:intron |
| TGGCTCATCTGAAAACCAAA+TGG | 0.544159 | 1_1:+65629650 | None:intergenic |
| AATAATGCTCAAGAGAATCC+AGG | 0.544827 | 1_1:-65632029 | Msa0036820:intron |
| CTCTCCTGTCATAGGAAACA+AGG | 0.552688 | 1_1:-65630141 | Msa0036820:intron |
| TGCATTTGCATCAACCCAGT+TGG | 0.557817 | 1_1:+65633165 | None:intergenic |
| TCTGCTGCTGCTAAAGGAGC+TGG | 0.564131 | 1_1:-65633034 | Msa0036820:intron |
| GCAATCACGCCAATTGCCGT+GGG | 0.571050 | 1_1:+65630439 | None:intergenic |
| AATTTCGAGGTCATTTCCCA+AGG | 0.572709 | 1_1:-65631312 | Msa0036820:CDS |
| GTGGCTCAGCCTCACATGGT+TGG | 0.572897 | 1_1:-65633073 | Msa0036820:CDS |
| TTATTCGATTCCAACTAGAA+GGG | 0.575258 | 1_1:+65629310 | None:intergenic |
| TAATATTAATAAAGAATGAA+GGG | 0.575654 | 1_1:+65633376 | None:intergenic |
| ATATCAATTATTACCGAAGT+GGG | 0.578018 | 1_1:+65630819 | None:intergenic |
| GAATACAGTGTTGATGTAGC+TGG | 0.581901 | 1_1:-65631141 | Msa0036820:intron |
| CAATATGTAGGCAATTGCTC+TGG | 0.584344 | 1_1:-65629749 | Msa0036820:intron |
| GTGTCGGGCTAGTTTAATTG+TGG | 0.585821 | 1_1:+65629250 | None:intergenic |
| GAAATACTGTGGCAGGGAGG+TGG | 0.587258 | 1_1:-65632152 | Msa0036820:intron |
| GATATCAATTATTACCGAAG+TGG | 0.589141 | 1_1:+65630818 | None:intergenic |
| GAAGTTCAGAAGATAAAATG+AGG | 0.591146 | 1_1:+65629280 | None:intergenic |
| TCCTTAATTAGTATTTAGTG+AGG | 0.596583 | 1_1:-65633336 | Msa0036820:five_prime_UTR |
| CATGTGCTATCACAAGGGTA+AGG | 0.597112 | 1_1:+65629676 | None:intergenic |
| CCTTCATCGGCCGATCCCCA+CGG | 0.597346 | 1_1:-65630455 | Msa0036820:CDS |
| GTGAAAATTCGTTACTGTGA+TGG | 0.602298 | 1_1:-65631878 | Msa0036820:CDS |
| CAATGTCCTTAACAGCGGCT+CGG | 0.605068 | 1_1:+65629704 | None:intergenic |
| TACTGTGGCAGGGAGGTGGT+TGG | 0.606796 | 1_1:-65632148 | Msa0036820:intron |
| TGGTGGCATGTGCTATCACA+AGG | 0.607600 | 1_1:+65629670 | None:intergenic |
| AATCTGAGAGGCAAGACACA+TGG | 0.627362 | 1_1:-65630175 | Msa0036820:CDS |
| TAATCATCTTGATCCCACTT+CGG | 0.628050 | 1_1:-65630832 | Msa0036820:intron |
| GTCAAGCTTAGCTCCTTCAT+CGG | 0.630234 | 1_1:-65630468 | Msa0036820:CDS |
| AGCAGCAGCAGATTGAATCA+GGG | 0.631535 | 1_1:+65633045 | None:intergenic |
| TCACAAATCCAATTTCTGCA+AGG | 0.632203 | 1_1:-65630389 | Msa0036820:intron |
| AGGGTGATTCCAACCATGTG+AGG | 0.639592 | 1_1:+65633064 | None:intergenic |
| TGAAGTGCCTTAGTGATGCT+GGG | 0.640149 | 1_1:-65631279 | Msa0036820:CDS |
| ATGTATGTGTACAACCTGCT+TGG | 0.643481 | 1_1:+65631457 | None:intergenic |
| TTAATACTGCCTATGACTCG+TGG | 0.644352 | 1_1:-65630621 | Msa0036820:CDS |
| CACATGGTGAATCTTGTGAG+AGG | 0.647932 | 1_1:-65630254 | Msa0036820:CDS |
| GCTGCGCAGTTGCAATTCAG+AGG | 0.649968 | 1_1:-65631536 | Msa0036820:CDS |
| TTGCTCACTGCCAATCTGAG+AGG | 0.650325 | 1_1:-65630187 | Msa0036820:CDS |
| CTCATCTGAAAACCAAATGG+TGG | 0.655239 | 1_1:+65629653 | None:intergenic |
| TTAGAAAGAAACAATAACCA+TGG | 0.656885 | 1_1:-65633230 | Msa0036820:exon |
| AGATGATTAGTACAAACGCG+TGG | 0.666672 | 1_1:+65630846 | None:intergenic |
| TACAGGATTCAGGAATCACA+TGG | 0.672670 | 1_1:-65630270 | Msa0036820:intron |
| GCAGTATTAAGAATGAATAG+CGG | 0.673265 | 1_1:+65630634 | None:intergenic |
| TATCGCAAGACAACACGACG+TGG | 0.673334 | 1_1:-65632101 | Msa0036820:CDS |
| TACAGTGTTGATGTAGCTGG+TGG | 0.678330 | 1_1:-65631138 | Msa0036820:intron |
| ACAATCAATGTCCTTAACAG+CGG | 0.695254 | 1_1:+65629699 | None:intergenic |
| AACCCAGAAAAGGTTCACCA+TGG | 0.700911 | 1_1:+65633213 | None:intergenic |
| CAATCACGCCAATTGCCGTG+GGG | 0.703508 | 1_1:+65630440 | None:intergenic |
| ACAGTGTTGATGTAGCTGGT+GGG | 0.721028 | 1_1:-65631137 | Msa0036820:intron |
| AGTATTAAGAATGAATAGCG+GGG | 0.730636 | 1_1:+65630636 | None:intergenic |
| TTTGTGAAAGAAACAAAACA+CGG | 0.735286 | 1_1:+65633268 | None:intergenic |
| GGTGGCATGTGCTATCACAA+GGG | 0.739938 | 1_1:+65629671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATTAATTAATATA+TGG | - | chr1_1:65630131-65630150 | Msa0036820:intron | 0.0% |
| !! | TAATATTAATAAAGAATGAA+GGG | + | chr1_1:65629252-65629271 | None:intergenic | 10.0% |
| !! | TTAATATTAATAAAGAATGA+AGG | + | chr1_1:65629253-65629272 | None:intergenic | 10.0% |
| !!! | ATACTTAATTAATTTGTTTT+TGG | - | chr1_1:65629996-65630015 | Msa0036820:intron | 10.0% |
| !! | ATCATAAAATATGATTTATT+CGG | + | chr1_1:65632068-65632087 | None:intergenic | 10.0% |
| !!! | TTATTACAATGTATATATTT+TGG | + | chr1_1:65633247-65633266 | None:intergenic | 10.0% |
| !!! | AACATTTTTTATAACAAAGA+AGG | + | chr1_1:65629633-65629652 | None:intergenic | 15.0% |
| !!! | AACAATTAGGAATTAATTTT+AGG | + | chr1_1:65631456-65631475 | None:intergenic | 15.0% |
| !! | AGGTTTAGTTAAAATATTAT+AGG | - | chr1_1:65632529-65632548 | Msa0036820:intron | 15.0% |
| !!! | CAAAATTTTTGGTTTATAGT+AGG | + | chr1_1:65629335-65629354 | None:intergenic | 20.0% |
| !!! | TGAGTTAAAGATTTCTTTTT+TGG | + | chr1_1:65629935-65629954 | None:intergenic | 20.0% |
| !! | TAAAAAAATCTGCAATCATA+CGG | + | chr1_1:65630716-65630735 | None:intergenic | 20.0% |
| !! | AAAACCTTAATGAATAAAGT+TGG | + | chr1_1:65630830-65630849 | None:intergenic | 20.0% |
| !!! | TTATTCATTAAGGTTTTCAT+AGG | - | chr1_1:65630833-65630852 | Msa0036820:CDS | 20.0% |
| !! | AAATCATGTGATAATAATGA+TGG | + | chr1_1:65631428-65631447 | None:intergenic | 20.0% |
| !! | AGGAAAAAGATATTACTAAA+AGG | + | chr1_1:65631923-65631942 | None:intergenic | 20.0% |
| !!! | TAAACATCTTATTTCTAACT+CGG | - | chr1_1:65632031-65632050 | Msa0036820:CDS | 20.0% |
| !!! | AAATCATATTTTATGATCTG+TGG | - | chr1_1:65632071-65632090 | Msa0036820:CDS | 20.0% |
| !! | TTAAACCATAATAAATGTTC+TGG | - | chr1_1:65632212-65632231 | Msa0036820:intron | 20.0% |
| !! | ATTTAACTAAAATCTGATAC+AGG | - | chr1_1:65632338-65632357 | Msa0036820:intron | 20.0% |
| !! | TTATGTATAGATCAATTAGT+TGG | - | chr1_1:65633165-65633184 | Msa0036820:CDS | 20.0% |
| !! | TATGTATAGATCAATTAGTT+GGG | - | chr1_1:65633166-65633185 | Msa0036820:CDS | 20.0% |
| !!! | AAGCTTTGTAAAAATCAAAA+GGG | + | chr1_1:65633206-65633225 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTTACAAAGCTT+GGG | - | chr1_1:65633206-65633225 | Msa0036820:CDS | 20.0% |
| ! | TCCTTAATTAGTATTTAGTG+AGG | - | chr1_1:65629289-65629308 | Msa0036820:three_prime_UTR | 25.0% |
| ! | TCCTCACTAAATACTAATTA+AGG | + | chr1_1:65629293-65629312 | None:intergenic | 25.0% |
| ! | TTTGTGAAAGAAACAAAACA+CGG | + | chr1_1:65629360-65629379 | None:intergenic | 25.0% |
| ! | TTAGAAAGAAACAATAACCA+TGG | - | chr1_1:65629395-65629414 | Msa0036820:three_prime_UTR | 25.0% |
| ! | ATAACAAAGAAGGTTAGAAA+TGG | + | chr1_1:65629623-65629642 | None:intergenic | 25.0% |
| !!! | TAAATCTGTAGCTTTTGATT+TGG | - | chr1_1:65629961-65629980 | Msa0036820:intron | 25.0% |
| ! | TTTACGATATGAACATATTG+AGG | + | chr1_1:65630170-65630189 | None:intergenic | 25.0% |
| ! | TCAATATGTTCATATCGTAA+AGG | - | chr1_1:65630169-65630188 | Msa0036820:CDS | 25.0% |
| !!! | TTCTTAGTTTAAAGTGTTGT+TGG | - | chr1_1:65630226-65630245 | Msa0036820:CDS | 25.0% |
| !!! | TCTTAGTTTAAAGTGTTGTT+GGG | - | chr1_1:65630227-65630246 | Msa0036820:CDS | 25.0% |
| ! | GATATTTAAGTGAAATACTG+TGG | - | chr1_1:65630462-65630481 | Msa0036820:CDS | 25.0% |
| ! | TTGCTTAATATTCCAGTAAA+AGG | + | chr1_1:65630578-65630597 | None:intergenic | 25.0% |
| ! | TACTCAAATTATGCTGAAAA+AGG | - | chr1_1:65630661-65630680 | Msa0036820:CDS | 25.0% |
| !!! | TGATTGCAGATTTTTTTAAC+TGG | - | chr1_1:65630718-65630737 | Msa0036820:intron | 25.0% |
| ! | ATAGCCAACTTTATTCATTA+AGG | - | chr1_1:65630823-65630842 | Msa0036820:intron | 25.0% |
| ! | TGTTTGTTTGATTGAAAGTT+AGG | - | chr1_1:65630905-65630924 | Msa0036820:intron | 25.0% |
| ! | TTAGTCGATCTATTTAATGT+AGG | - | chr1_1:65631022-65631041 | Msa0036820:intron | 25.0% |
| ! | TAGTCGATCTATTTAATGTA+GGG | - | chr1_1:65631023-65631042 | Msa0036820:intron | 25.0% |
| ! | ACAGATAATATTCAGAAATC+AGG | + | chr1_1:65631061-65631080 | None:intergenic | 25.0% |
| ! | TGAATATTATCTGTTGACAT+AGG | - | chr1_1:65631067-65631086 | Msa0036820:intron | 25.0% |
| ! | TAGAATGAAATACTGAAGTT+AGG | + | chr1_1:65631393-65631412 | None:intergenic | 25.0% |
| ! | CACATGCTAAATAGTTTATA+TGG | - | chr1_1:65631652-65631671 | Msa0036820:intron | 25.0% |
| ! | AGTTTATATGGCTTAAAACT+TGG | - | chr1_1:65631664-65631683 | Msa0036820:intron | 25.0% |
| ! | CAATCATCATGCTTTATATA+AGG | + | chr1_1:65631711-65631730 | None:intergenic | 25.0% |
| ! | ATATCAATTATTACCGAAGT+GGG | + | chr1_1:65631809-65631828 | None:intergenic | 25.0% |
| ! | AATATGATTTATTCGGAGTT+TGG | + | chr1_1:65632061-65632080 | None:intergenic | 25.0% |
| !!! | ATTTTAACTAAACCTGCATA+GGG | + | chr1_1:65632524-65632543 | None:intergenic | 25.0% |
| !!! | TATTTTAACTAAACCTGCAT+AGG | + | chr1_1:65632525-65632544 | None:intergenic | 25.0% |
| ! | GAATAGTTTATAGCAAAAAC+AGG | + | chr1_1:65632639-65632658 | None:intergenic | 25.0% |
| !! | TTTGCTATAAACTATTCACA+TGG | - | chr1_1:65632642-65632661 | Msa0036820:intron | 25.0% |
| ! | TTCACATGGAGAAAAATTAT+AGG | - | chr1_1:65632656-65632675 | Msa0036820:intron | 25.0% |
| ! | TACATATTGTCAATGCATAA+GGG | + | chr1_1:65632865-65632884 | None:intergenic | 25.0% |
| ! | TTCATTTCTCATCAACAATT+CGG | - | chr1_1:65633036-65633055 | Msa0036820:CDS | 25.0% |
| ! | TAACTACTAATTCTTGGAAA+AGG | + | chr1_1:65633132-65633151 | None:intergenic | 25.0% |
| !! | TTTTCCAAGAATTAGTAGTT+AGG | - | chr1_1:65633131-65633150 | Msa0036820:CDS | 25.0% |
| ! | TTTCCAAGAATTAGTAGTTA+GGG | - | chr1_1:65633132-65633151 | Msa0036820:CDS | 25.0% |
| !! | CAAGCTTTGTAAAAATCAAA+AGG | + | chr1_1:65633207-65633226 | None:intergenic | 25.0% |
| !!! | CTTTTGATTTTTACAAAGCT+TGG | - | chr1_1:65633205-65633224 | Msa0036820:CDS | 25.0% |
| ! | CTAGTTTAATTGTGGTAATA+TGG | + | chr1_1:65633370-65633389 | None:intergenic | 25.0% |
| TGGTTTATAGTAGGAAAGAA+GGG | + | chr1_1:65629326-65629345 | None:intergenic | 30.0% | |
| TTGGTTTATAGTAGGAAAGA+AGG | + | chr1_1:65629327-65629346 | None:intergenic | 30.0% | |
| ! | AAAACACGGTGCAAAATTTT+TGG | + | chr1_1:65629346-65629365 | None:intergenic | 30.0% |
| ! | TTCTTCTTTTTCTTCACTTG+TGG | - | chr1_1:65629533-65629552 | Msa0036820:three_prime_UTR | 30.0% |
| TTTCAGCAACAAAACTTCAA+AGG | + | chr1_1:65629808-65629827 | None:intergenic | 30.0% | |
| ATACATAACATGGCAAATTG+GGG | + | chr1_1:65629856-65629875 | None:intergenic | 30.0% | |
| CATACATAACATGGCAAATT+GGG | + | chr1_1:65629857-65629876 | None:intergenic | 30.0% | |
| TCATACATAACATGGCAAAT+TGG | + | chr1_1:65629858-65629877 | None:intergenic | 30.0% | |
| TCACATTCTCATACATAACA+TGG | + | chr1_1:65629866-65629885 | None:intergenic | 30.0% | |
| !! | CTTAGTTTAAAGTGTTGTTG+GGG | - | chr1_1:65630228-65630247 | Msa0036820:CDS | 30.0% |
| ! | AGCAATACATGACATGTTTT+TGG | + | chr1_1:65630381-65630400 | None:intergenic | 30.0% |
| ! | AAAGGATTTGCTTAACTGTT+TGG | - | chr1_1:65630679-65630698 | Msa0036820:intron | 30.0% |
| AACTGTATGAATGATGCATA+AGG | - | chr1_1:65630956-65630975 | Msa0036820:intron | 30.0% | |
| ! | TTTACAACTTTGTTTCCTTC+AGG | - | chr1_1:65631236-65631255 | Msa0036820:intron | 30.0% |
| !! | TGTGATAATAATGATGGACA+TGG | + | chr1_1:65631422-65631441 | None:intergenic | 30.0% |
| ! | TTCTTGAGATCATTCTGTTT+TGG | - | chr1_1:65631568-65631587 | Msa0036820:intron | 30.0% |
| !! | TAAAACTTGGTCATTTTGCA+TGG | - | chr1_1:65631677-65631696 | Msa0036820:intron | 30.0% |
| !! | TATATTTTTGCACTCATTGC+AGG | - | chr1_1:65631739-65631758 | Msa0036820:intron | 30.0% |
| !! | ATATTTTTGCACTCATTGCA+GGG | - | chr1_1:65631740-65631759 | Msa0036820:intron | 30.0% |
| GATATCAATTATTACCGAAG+TGG | + | chr1_1:65631810-65631829 | None:intergenic | 30.0% | |
| GTTTCATTTGAGTGAATTTG+AGG | - | chr1_1:65631857-65631876 | Msa0036820:CDS | 30.0% | |
| CTCTGAACAATAATTAACGA+CGG | + | chr1_1:65631896-65631915 | None:intergenic | 30.0% | |
| AGTATTAAGAATGAATAGCG+GGG | + | chr1_1:65631992-65632011 | None:intergenic | 30.0% | |
| CAGTATTAAGAATGAATAGC+GGG | + | chr1_1:65631993-65632012 | None:intergenic | 30.0% | |
| GCAGTATTAAGAATGAATAG+CGG | + | chr1_1:65631994-65632013 | None:intergenic | 30.0% | |
| GTGAACCAGAACATTTATTA+TGG | + | chr1_1:65632220-65632239 | None:intergenic | 30.0% | |
| TAAAATCTGATACAGGATTC+AGG | - | chr1_1:65632345-65632364 | Msa0036820:intron | 30.0% | |
| AGCAGTGTCATGAAAAATAA+TGG | + | chr1_1:65632744-65632763 | None:intergenic | 30.0% | |
| CTACATATTGTCAATGCATA+AGG | + | chr1_1:65632866-65632885 | None:intergenic | 30.0% | |
| ! | CTTATGCATTGACAATATGT+AGG | - | chr1_1:65632864-65632883 | Msa0036820:intron | 30.0% |
| TTATTCGATTCCAACTAGAA+GGG | + | chr1_1:65633318-65633337 | None:intergenic | 30.0% | |
| TTTATTCGATTCCAACTAGA+AGG | + | chr1_1:65633319-65633338 | None:intergenic | 30.0% | |
| TCTAGTTGGAATCGAATAAA+AGG | - | chr1_1:65633319-65633338 | Msa0036820:five_prime_UTR | 30.0% | |
| CTAGTTGGAATCGAATAAAA+GGG | - | chr1_1:65633320-65633339 | Msa0036820:five_prime_UTR | 30.0% | |
| GAAGTTCAGAAGATAAAATG+AGG | + | chr1_1:65633348-65633367 | None:intergenic | 30.0% | |
| TCTACAAAAATTCGAAGTGT+CGG | + | chr1_1:65633394-65633413 | None:intergenic | 30.0% | |
| AAGAAGAGGGAGATTTAGAA+AGG | + | chr1_1:65629210-65629229 | None:intergenic | 35.0% | |
| AATGAAGGGTAAGAAGAAGA+AGG | + | chr1_1:65629238-65629257 | None:intergenic | 35.0% | |
| TTACAATGCAAACCCAGAAA+AGG | + | chr1_1:65629425-65629444 | None:intergenic | 35.0% | |
| TACATAACATGGCAAATTGG+GGG | + | chr1_1:65629855-65629874 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTTGGCAGTCTGTT+TGG | - | chr1_1:65630008-65630027 | Msa0036820:intron | 35.0% |
| !! | TATCATTTTGATCGCGGATA+CGG | - | chr1_1:65630048-65630067 | Msa0036820:intron | 35.0% |
| AGGTTGACAAGTCTTTCTAT+TGG | - | chr1_1:65630189-65630208 | Msa0036820:CDS | 35.0% | |
| TTTAAGTGAAATACTGTGGC+AGG | - | chr1_1:65630466-65630485 | Msa0036820:CDS | 35.0% | |
| TTAAGTGAAATACTGTGGCA+GGG | - | chr1_1:65630467-65630486 | Msa0036820:CDS | 35.0% | |
| ! | GAAAAAGCGATACCTTTTAC+TGG | - | chr1_1:65630563-65630582 | Msa0036820:intron | 35.0% |
| AATAATGCTCAAGAGAATCC+AGG | - | chr1_1:65630596-65630615 | Msa0036820:intron | 35.0% | |
| GTTTCAGTTGAATGAAAACC+TGG | + | chr1_1:65630617-65630636 | None:intergenic | 35.0% | |
| GTGAAAATTCGTTACTGTGA+TGG | - | chr1_1:65630747-65630766 | Msa0036820:intron | 35.0% | |
| TATTCAGGGGGAAAACAATT+AGG | + | chr1_1:65631469-65631488 | None:intergenic | 35.0% | |
| TACATCAACACTGTATTCAG+GGG | + | chr1_1:65631482-65631501 | None:intergenic | 35.0% | |
| CTACATCAACACTGTATTCA+GGG | + | chr1_1:65631483-65631502 | None:intergenic | 35.0% | |
| !!! | ACCCTCAGGAATTTTTTCAA+CGG | - | chr1_1:65631514-65631533 | Msa0036820:CDS | 35.0% |
| ACCGTTGAAAAAATTCCTGA+GGG | + | chr1_1:65631518-65631537 | None:intergenic | 35.0% | |
| ! | AAAAAAGTGCAGTACCTGTA+GGG | + | chr1_1:65631548-65631567 | None:intergenic | 35.0% |
| ! | AAAAAAAGTGCAGTACCTGT+AGG | + | chr1_1:65631549-65631568 | None:intergenic | 35.0% |
| TCAAGTGAAAGAAAGATCCA+TGG | + | chr1_1:65631594-65631613 | None:intergenic | 35.0% | |
| TAATCATCTTGATCCCACTT+CGG | - | chr1_1:65631793-65631812 | Msa0036820:intron | 35.0% | |
| TTTGTTTCAGTGCTTCTTTC+CGG | - | chr1_1:65631942-65631961 | Msa0036820:intron | 35.0% | |
| ATACTAGCAATCAAGTTCTC+CGG | + | chr1_1:65631964-65631983 | None:intergenic | 35.0% | |
| TCACAAATCCAATTTCTGCA+AGG | - | chr1_1:65632236-65632255 | Msa0036820:intron | 35.0% | |
| AAATCCAATTTCTGCAAGGT+GGG | - | chr1_1:65632240-65632259 | Msa0036820:intron | 35.0% | |
| TTCTCAAGATCAGGTCAAAA+TGG | - | chr1_1:65632395-65632414 | Msa0036820:intron | 35.0% | |
| AATATTATAGGTTTCCGTGC+TGG | - | chr1_1:65632541-65632560 | Msa0036820:intron | 35.0% | |
| ! | AAATAATGGAATCGTCACTG+CGG | + | chr1_1:65632730-65632749 | None:intergenic | 35.0% |
| ACAATCAATGTCCTTAACAG+CGG | + | chr1_1:65632929-65632948 | None:intergenic | 35.0% | |
| TCTCCCTAACTACTAATTCT+TGG | + | chr1_1:65633138-65633157 | None:intergenic | 35.0% | |
| ! | ATTTTTACAAAGCTTGGGAG+AGG | - | chr1_1:65633211-65633230 | Msa0036820:CDS | 35.0% |
| !! | AGATGAGCATTGATAGTGAT+TGG | - | chr1_1:65633266-65633285 | Msa0036820:five_prime_UTR | 35.0% |
| ACTAGAAGGGAAACATCATA+TGG | + | chr1_1:65633305-65633324 | None:intergenic | 35.0% | |
| TATGATGTTTCCCTTCTAGT+TGG | - | chr1_1:65633305-65633324 | Msa0036820:five_prime_UTR | 35.0% | |
| ! | CTACAAAAATTCGAAGTGTC+GGG | + | chr1_1:65633393-65633412 | None:intergenic | 35.0% |
| AGGGAGATTTAGAAAGGAAC+AGG | + | chr1_1:65629204-65629223 | None:intergenic | 40.0% | |
| GAAGAAGGAAGAGAAGAAGA+GGG | + | chr1_1:65629223-65629242 | None:intergenic | 40.0% | |
| AGAAGAAGGAAGAGAAGAAG+AGG | + | chr1_1:65629224-65629243 | None:intergenic | 40.0% | |
| ! | TAACCATGGTGAACCTTTTC+TGG | - | chr1_1:65629409-65629428 | Msa0036820:three_prime_UTR | 40.0% |
| ! | AACCATGGTGAACCTTTTCT+GGG | - | chr1_1:65629410-65629429 | Msa0036820:three_prime_UTR | 40.0% |
| !! | TAGCACTTGTTTTCACCAAC+TGG | - | chr1_1:65629445-65629464 | Msa0036820:three_prime_UTR | 40.0% |
| !! | AGCACTTGTTTTCACCAACT+GGG | - | chr1_1:65629446-65629465 | Msa0036820:three_prime_UTR | 40.0% |
| AGAAGCTTCATGAGCTTCTA+AGG | + | chr1_1:65629517-65629536 | None:intergenic | 40.0% | |
| ATTCAATCTGCTGCTGCTAA+AGG | - | chr1_1:65629585-65629604 | Msa0036820:three_prime_UTR | 40.0% | |
| !! | TTGACCAACTCAGCTTTGTT+TGG | - | chr1_1:65629900-65629919 | Msa0036820:intron | 40.0% |
| !! | TTTTTGGCAGTCTGTTTGGA+TGG | - | chr1_1:65630012-65630031 | Msa0036820:intron | 40.0% |
| !! | CCTGCTTATCATTTTGATCG+CGG | - | chr1_1:65630042-65630061 | Msa0036820:intron | 40.0% |
| !! | CAGCTGGCTTGTTAATTTAG+AGG | - | chr1_1:65630083-65630102 | Msa0036820:intron | 40.0% |
| ACGTGGATCATCAAAGTTCA+TGG | - | chr1_1:65630541-65630560 | Msa0036820:intron | 40.0% | |
| TTCACTATCCCCTGTAAAAG+AGG | + | chr1_1:65630775-65630794 | None:intergenic | 40.0% | |
| TACAGGGGATAGTGAAGATA+AGG | - | chr1_1:65630779-65630798 | Msa0036820:intron | 40.0% | |
| ACTACATCTAACACTAGCAG+AGG | + | chr1_1:65630864-65630883 | None:intergenic | 40.0% | |
| AATTCAGAGGACAACGCATT+TGG | - | chr1_1:65631102-65631121 | Msa0036820:CDS | 40.0% | |
| GTGGAGGATTTGATGTCAAA+AGG | - | chr1_1:65631134-65631153 | Msa0036820:CDS | 40.0% | |
| ATGTATGTGTACAACCTGCT+TGG | + | chr1_1:65631171-65631190 | None:intergenic | 40.0% | |
| TTACACTGCGATGAATTTCG+AGG | - | chr1_1:65631300-65631319 | Msa0036820:CDS | 40.0% | |
| AATTTCGAGGTCATTTCCCA+AGG | - | chr1_1:65631313-65631332 | Msa0036820:CDS | 40.0% | |
| ! | ACTTCACTTTGGTAGTCCTT+GGG | + | chr1_1:65631332-65631351 | None:intergenic | 40.0% |
| ! | ATCACTAAGGCACTTCACTT+TGG | + | chr1_1:65631343-65631362 | None:intergenic | 40.0% |
| GAAATAACCCAGCATCACTA+AGG | + | chr1_1:65631356-65631375 | None:intergenic | 40.0% | |
| ACATCAACACTGTATTCAGG+GGG | + | chr1_1:65631481-65631500 | None:intergenic | 40.0% | |
| GCTACATCAACACTGTATTC+AGG | + | chr1_1:65631484-65631503 | None:intergenic | 40.0% | |
| !! | GAATACAGTGTTGATGTAGC+TGG | - | chr1_1:65631484-65631503 | Msa0036820:CDS | 40.0% |
| CACCGTTGAAAAAATTCCTG+AGG | + | chr1_1:65631519-65631538 | None:intergenic | 40.0% | |
| !!! | AGATCATTCTGTTTTGGCCA+TGG | - | chr1_1:65631574-65631593 | Msa0036820:intron | 40.0% |
| AGATGATTAGTACAAACGCG+TGG | + | chr1_1:65631782-65631801 | None:intergenic | 40.0% | |
| ! | ATAATTAACGACGGAGCACT+TGG | + | chr1_1:65631887-65631906 | None:intergenic | 40.0% |
| !! | GGAAAGAAGCACTGAAACAA+AGG | + | chr1_1:65631943-65631962 | None:intergenic | 40.0% |
| TTAATACTGCCTATGACTCG+TGG | - | chr1_1:65632004-65632023 | Msa0036820:intron | 40.0% | |
| CAAATCCAATTTCTGCAAGG+TGG | - | chr1_1:65632239-65632258 | Msa0036820:intron | 40.0% | |
| TACAGGATTCAGGAATCACA+TGG | - | chr1_1:65632355-65632374 | Msa0036820:intron | 40.0% | |
| AGTTTCACATATCCCTATGC+AGG | - | chr1_1:65632509-65632528 | Msa0036820:intron | 40.0% | |
| AATATAACCGCATACCAGCA+CGG | + | chr1_1:65632558-65632577 | None:intergenic | 40.0% | |
| CAATATGTAGGCAATTGCTC+TGG | - | chr1_1:65632876-65632895 | Msa0036820:intron | 40.0% | |
| CTCATCTGAAAACCAAATGG+TGG | + | chr1_1:65632975-65632994 | None:intergenic | 40.0% | |
| TGGCTCATCTGAAAACCAAA+TGG | + | chr1_1:65632978-65632997 | None:intergenic | 40.0% | |
| TGAGTGAGACTGAAGAAGTT+TGG | + | chr1_1:65632998-65633017 | None:intergenic | 40.0% | |
| AACCCAGAAAAGGTTCACCA+TGG | + | chr1_1:65629415-65629434 | None:intergenic | 45.0% | |
| TGCATTTGCATCAACCCAGT+TGG | + | chr1_1:65629463-65629482 | None:intergenic | 45.0% | |
| AGCAGCAGCAGATTGAATCA+GGG | + | chr1_1:65629583-65629602 | None:intergenic | 45.0% | |
| TAGCAGCAGCAGATTGAATC+AGG | + | chr1_1:65629584-65629603 | None:intergenic | 45.0% | |
| ACAGCCAAACAAAGCTGAGT+TGG | + | chr1_1:65629907-65629926 | None:intergenic | 45.0% | |
| CCGCGATCAAAATGATAAGC+AGG | + | chr1_1:65630045-65630064 | None:intergenic | 45.0% | |
| TATTCCCAACGCTACTTCCT+CGG | - | chr1_1:65630417-65630436 | Msa0036820:CDS | 45.0% | |
| TGCGATAGACGCAAGTTCTA+CGG | + | chr1_1:65630511-65630530 | None:intergenic | 45.0% | |
| !! | TGTGATGGTGCCTCTTTTAC+AGG | - | chr1_1:65630762-65630781 | Msa0036820:intron | 45.0% |
| !! | GTGATGGTGCCTCTTTTACA+GGG | - | chr1_1:65630763-65630782 | Msa0036820:intron | 45.0% |
| !! | TGATGGTGCCTCTTTTACAG+GGG | - | chr1_1:65630764-65630783 | Msa0036820:intron | 45.0% |
| TTCCTTCAGGCTCTTCTTTC+TGG | - | chr1_1:65631249-65631268 | Msa0036820:intron | 45.0% | |
| ATCCAGAAAGAAGAGCCTGA+AGG | + | chr1_1:65631254-65631273 | None:intergenic | 45.0% | |
| ! | CACTTCACTTTGGTAGTCCT+TGG | + | chr1_1:65631333-65631352 | None:intergenic | 45.0% |
| ! | TGAAGTGCCTTAGTGATGCT+GGG | - | chr1_1:65631346-65631365 | Msa0036820:CDS | 45.0% |
| !! | TACAGTGTTGATGTAGCTGG+TGG | - | chr1_1:65631487-65631506 | Msa0036820:CDS | 45.0% |
| !! | ACAGTGTTGATGTAGCTGGT+GGG | - | chr1_1:65631488-65631507 | Msa0036820:CDS | 45.0% |
| ATGAAGGAGCTAAGCTTGAC+TGG | + | chr1_1:65632157-65632176 | None:intergenic | 45.0% | |
| GTCAAGCTTAGCTCCTTCAT+CGG | - | chr1_1:65632157-65632176 | Msa0036820:intron | 45.0% | |
| TCAACCCACCTTGCAGAAAT+TGG | + | chr1_1:65632247-65632266 | None:intergenic | 45.0% | |
| CACATGGTGAATCTTGTGAG+AGG | - | chr1_1:65632371-65632390 | Msa0036820:intron | 45.0% | |
| ATGTGTCTTGCCTCTCAGAT+TGG | + | chr1_1:65632451-65632470 | None:intergenic | 45.0% | |
| AATCTGAGAGGCAAGACACA+TGG | - | chr1_1:65632450-65632469 | Msa0036820:intron | 45.0% | |
| CTCTCCTGTCATAGGAAACA+AGG | - | chr1_1:65632484-65632503 | Msa0036820:intron | 45.0% | |
| ! | CTCACCTTGTTTCCTATGAC+AGG | + | chr1_1:65632491-65632510 | None:intergenic | 45.0% |
| CATGTGCTATCACAAGGGTA+AGG | + | chr1_1:65632952-65632971 | None:intergenic | 45.0% | |
| TGATAGCACATGCCACCATT+TGG | - | chr1_1:65632960-65632979 | Msa0036820:intron | 45.0% | |
| !! | GTGTCGGGCTAGTTTAATTG+TGG | + | chr1_1:65633378-65633397 | None:intergenic | 45.0% |
| !! | AATTAATTATCAATTAAAAA+TGG | - | chr1_1:65629759-65629778 | Msa0036820:intron | 5.0% |
| !! | TTATTATTATTTATTTATTC+AGG | + | chr1_1:65632590-65632609 | None:intergenic | 5.0% |
| AGGGTGATTCCAACCATGTG+AGG | + | chr1_1:65629564-65629583 | None:intergenic | 50.0% | |
| TTTGATCGCGGATACGGATC+CGG | - | chr1_1:65630054-65630073 | Msa0036820:intron | 50.0% | |
| AACAAGCCAGCTGTTTGCAC+CGG | + | chr1_1:65630076-65630095 | None:intergenic | 50.0% | |
| ATGTTTGTATAGCACCGCCG+AGG | + | chr1_1:65630437-65630456 | None:intergenic | 50.0% | |
| AGTGAAATACTGTGGCAGGG+AGG | - | chr1_1:65630470-65630489 | Msa0036820:CDS | 50.0% | |
| TATCGCAAGACAACACGACG+TGG | - | chr1_1:65630524-65630543 | Msa0036820:intron | 50.0% | |
| CAGAGGACAACGCATTTGGT+TGG | - | chr1_1:65631106-65631125 | Msa0036820:CDS | 50.0% | |
| ! | AGGAATGCGTTTTGCCAAGC+AGG | - | chr1_1:65631154-65631173 | Msa0036820:intron | 50.0% |
| CTTCTTTCTGGATGCTCAGC+TGG | - | chr1_1:65631261-65631280 | Msa0036820:intron | 50.0% | |
| ! | GTGAAGTGCCTTAGTGATGC+TGG | - | chr1_1:65631345-65631364 | Msa0036820:CDS | 50.0% |
| GTTTACCTGCCACGAGTCAT+AGG | + | chr1_1:65632016-65632035 | None:intergenic | 50.0% | |
| GTGAGAGGCTTCTCAAGATC+AGG | - | chr1_1:65632386-65632405 | Msa0036820:intron | 50.0% | |
| TTGCTCACTGCCAATCTGAG+AGG | - | chr1_1:65632438-65632457 | Msa0036820:intron | 50.0% | |
| GCTGACAACTCTCCTGTCAT+AGG | - | chr1_1:65632476-65632495 | Msa0036820:intron | 50.0% | |
| ! | TAGGTTTCCGTGCTGGTATG+CGG | - | chr1_1:65632548-65632567 | Msa0036820:CDS | 50.0% |
| TAGGCAATTGCTCTGGCTGT+TGG | - | chr1_1:65632883-65632902 | Msa0036820:intron | 50.0% | |
| ! | TTTTGACCGAGCCGCTGTTA+AGG | - | chr1_1:65632915-65632934 | Msa0036820:intron | 50.0% |
| CAATGTCCTTAACAGCGGCT+CGG | + | chr1_1:65632924-65632943 | None:intergenic | 50.0% | |
| GGTGGCATGTGCTATCACAA+GGG | + | chr1_1:65632957-65632976 | None:intergenic | 50.0% | |
| TGGTGGCATGTGCTATCACA+AGG | + | chr1_1:65632958-65632977 | None:intergenic | 50.0% | |
| ACTCATCTCACTCACTCGCT+TGG | - | chr1_1:65633013-65633032 | Msa0036820:intron | 50.0% | |
| ACTTGTGGCTCAGCCTCACA+TGG | - | chr1_1:65629548-65629567 | Msa0036820:three_prime_UTR | 55.0% | |
| TCTGCTGCTGCTAAAGGAGC+TGG | - | chr1_1:65629591-65629610 | Msa0036820:three_prime_UTR | 55.0% | |
| GAAATACTGTGGCAGGGAGG+TGG | - | chr1_1:65630473-65630492 | Msa0036820:CDS | 55.0% | |
| GCTGCGCAGTTGCAATTCAG+AGG | - | chr1_1:65631089-65631108 | Msa0036820:intron | 55.0% | |
| ! | ACGCATTTGGTTGGCTGCAG+TGG | - | chr1_1:65631115-65631134 | Msa0036820:CDS | 55.0% |
| ! | CATTTGGTTGGCTGCAGTGG+AGG | - | chr1_1:65631118-65631137 | Msa0036820:CDS | 55.0% |
| CTTTCTGGATGCTCAGCTGG+TGG | - | chr1_1:65631264-65631283 | Msa0036820:intron | 55.0% | |
| !! | CAACGGTGTTGTCACCCTAC+AGG | - | chr1_1:65631531-65631550 | Msa0036820:CDS | 55.0% |
| TACTGCCTATGACTCGTGGC+AGG | - | chr1_1:65632008-65632027 | Msa0036820:intron | 55.0% | |
| CAATCACGCCAATTGCCGTG+GGG | + | chr1_1:65632188-65632207 | None:intergenic | 55.0% | |
| GCAATCACGCCAATTGCCGT+GGG | + | chr1_1:65632189-65632208 | None:intergenic | 55.0% | |
| TGCAATCACGCCAATTGCCG+TGG | + | chr1_1:65632190-65632209 | None:intergenic | 55.0% | |
| TTGCTCTGGCTGTTGGAGAC+TGG | - | chr1_1:65632890-65632909 | Msa0036820:intron | 55.0% | |
| GTGGCTCAGCCTCACATGGT+TGG | - | chr1_1:65629552-65629571 | Msa0036820:three_prime_UTR | 60.0% | |
| ACGGATCCGGTGCAAACAGC+TGG | - | chr1_1:65630067-65630086 | Msa0036820:intron | 60.0% | |
| TCCCAACGCTACTTCCTCGG+CGG | - | chr1_1:65630420-65630439 | Msa0036820:CDS | 60.0% | |
| ACCGCCGAGGAAGTAGCGTT+GGG | + | chr1_1:65630424-65630443 | None:intergenic | 60.0% | |
| TACTGTGGCAGGGAGGTGGT+TGG | - | chr1_1:65630477-65630496 | Msa0036820:intron | 60.0% | |
| ! | TAGCTGGTGGGCATACCCTC+AGG | - | chr1_1:65631500-65631519 | Msa0036820:CDS | 60.0% |
| ACGCCAATTGCCGTGGGGAT+CGG | + | chr1_1:65632183-65632202 | None:intergenic | 60.0% | |
| CACCGCCGAGGAAGTAGCGT+TGG | + | chr1_1:65630425-65630444 | None:intergenic | 65.0% | |
| CCTTCATCGGCCGATCCCCA+CGG | - | chr1_1:65632170-65632189 | Msa0036820:intron | 65.0% | |
| CCGTGGGGATCGGCCGATGA+AGG | + | chr1_1:65632173-65632192 | None:intergenic | 70.0% | |
| CGGCCGATCCCCACGGCAAT+TGG | - | chr1_1:65632177-65632196 | Msa0036820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65629182 | 65633465 | 65629182 | ID=Msa0036820;Name=Msa0036820 |
| chr1_1 | mRNA | 65629182 | 65633465 | 65629182 | ID=Msa0036820-mRNA-1;Parent=Msa0036820;Name=Msa0036820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|1|1|1|1|1|12|472|416 |
| chr1_1 | exon | 65629182 | 65629761 | 65629182 | ID=Msa0036820-mRNA-1:exon:21135;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65630142 | 65630287 | 65630142 | ID=Msa0036820-mRNA-1:exon:21134;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65630390 | 65630495 | 65630390 | ID=Msa0036820-mRNA-1:exon:21133;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65630618 | 65630695 | 65630618 | ID=Msa0036820-mRNA-1:exon:21132;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65630833 | 65630886 | 65630833 | ID=Msa0036820-mRNA-1:exon:21131;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65631095 | 65631155 | 65631095 | ID=Msa0036820-mRNA-1:exon:21130;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65631265 | 65631389 | 65631265 | ID=Msa0036820-mRNA-1:exon:21129;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65631472 | 65631558 | 65631472 | ID=Msa0036820-mRNA-1:exon:21128;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65631847 | 65631920 | 65631847 | ID=Msa0036820-mRNA-1:exon:21127;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65632030 | 65632159 | 65632030 | ID=Msa0036820-mRNA-1:exon:21126;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65632543 | 65632625 | 65632543 | ID=Msa0036820-mRNA-1:exon:21125;Parent=Msa0036820-mRNA-1 |
| chr1_1 | exon | 65633035 | 65633465 | 65633035 | ID=Msa0036820-mRNA-1:exon:21124;Parent=Msa0036820-mRNA-1 |
| chr1_1 | five_prime_UTR | 65633234 | 65633465 | 65633234 | ID=Msa0036820-mRNA-1:five_prime_utr;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65633035 | 65633233 | 65633035 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65632543 | 65632625 | 65632543 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65632030 | 65632159 | 65632030 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65631847 | 65631920 | 65631847 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65631472 | 65631558 | 65631472 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65631265 | 65631389 | 65631265 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65631095 | 65631155 | 65631095 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65630833 | 65630886 | 65630833 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65630618 | 65630695 | 65630618 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65630390 | 65630495 | 65630390 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65630142 | 65630287 | 65630142 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | CDS | 65629654 | 65629761 | 65629654 | ID=Msa0036820-mRNA-1:cds;Parent=Msa0036820-mRNA-1 |
| chr1_1 | three_prime_UTR | 65629182 | 65629653 | 65629182 | ID=Msa0036820-mRNA-1:three_prime_utr;Parent=Msa0036820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
