Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081060 | GAU23880.1 | 88.235 | 204 | 13 | 1 | 1 | 193 | 1 | 204 | 1.93e-122 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081060 | sp|C6TEX6|FEN1_SOYBN | 83.756 | 197 | 28 | 1 | 1 | 193 | 1 | 197 | 4.04e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081060 | A0A2Z6MK95 | 88.235 | 204 | 13 | 1 | 1 | 193 | 1 | 204 | 9.24e-123 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051920 | Msa0081060 | 0.808133 | 3.596948e-50 | -8.615850e-47 |
| Msa0081060 | Msa0081070 | 0.880748 | 4.252314e-70 | -8.615850e-47 |
| Msa0081060 | Msa0140600 | 0.805923 | 1.055996e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081060 | MtrunA17_Chr1g0193411 | 90.863 | 197 | 14 | 1 | 1 | 193 | 1 | 197 | 2.79e-126 | 360 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0081060 | AT5G26680.2 | 81.726 | 197 | 32 | 1 | 1 | 193 | 1 | 197 | 4.12e-112 | 325 |
| Msa0081060 | AT5G26680.5 | 81.726 | 197 | 32 | 1 | 1 | 193 | 1 | 197 | 1.16e-111 | 325 |
| Msa0081060 | AT5G26680.4 | 81.726 | 197 | 32 | 1 | 1 | 193 | 1 | 197 | 1.16e-111 | 325 |
| Msa0081060 | AT5G26680.3 | 81.726 | 197 | 32 | 1 | 1 | 193 | 1 | 197 | 1.16e-111 | 325 |
| Msa0081060 | AT5G26680.1 | 81.726 | 197 | 32 | 1 | 1 | 193 | 1 | 197 | 1.29e-110 | 323 |
Find 44 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACATTGTTATGGATTT+AGG | 0.168330 | 1_2:-59589179 | None:intergenic |
| TTTGTTCTCCTTCATTGATT+TGG | 0.219066 | 1_2:-59587536 | None:intergenic |
| TTGTTCTCCTTCATTGATTT+GGG | 0.261805 | 1_2:-59587535 | None:intergenic |
| CCTTACGAAAACACCTTTAC+AGG | 0.320453 | 1_2:+59587254 | None:intergenic |
| TCAAACAACGATGGGTATTA+AGG | 0.329268 | 1_2:+59587367 | Msa0081060:exon |
| TGTGCTGCACTTTGCAAAGC+TGG | 0.379737 | 1_2:+59589012 | Msa0081060:CDS |
| TGAAACCACTTACAAGAAAC+TGG | 0.396979 | 1_2:-59587612 | None:intergenic |
| AGCTCTTGATTCTTCATCTC+CGG | 0.402266 | 1_2:-59588394 | None:intergenic |
| TTGCAGAGGATAATGTGAAT+TGG | 0.408026 | 1_2:-59587336 | None:intergenic |
| AACAAATTCGAATCTTACTT+TGG | 0.413135 | 1_2:+59587553 | Msa0081060:CDS |
| TGACGGCAGAAAGATGAATA+AGG | 0.423648 | 1_2:-59587309 | None:intergenic |
| TTTCCATGGTCTGTATGAAA+AGG | 0.450366 | 1_2:-59589106 | None:intergenic |
| ATGAAGCTGGTGAAGTTACT+AGG | 0.451951 | 1_2:+59587738 | Msa0081060:CDS |
| TGCAACGTCACCTCAACAAC+AGG | 0.456473 | 1_2:-59588899 | None:intergenic |
| CGAGGCTACCGCGGGTTTGA+CGG | 0.478333 | 1_2:+59588540 | Msa0081060:CDS |
| ACATTGAGCCTCTGCTTCTG+AGG | 0.483766 | 1_2:-59588992 | None:intergenic |
| TGCACTTTGCAAAGCTGGAA+AGG | 0.511154 | 1_2:+59589017 | Msa0081060:CDS |
| TAGATTGTTGTGGGAAGAAG+TGG | 0.512021 | 1_2:+59587698 | Msa0081060:intron |
| CAATCAGACTTCTAGAAGCC+GGG | 0.522415 | 1_2:+59588229 | Msa0081060:CDS |
| TAGCATCAACAGCAATCTTA+CGG | 0.527772 | 1_2:-59587576 | None:intergenic |
| ACAATCAGACTTCTAGAAGC+CGG | 0.528458 | 1_2:+59588228 | Msa0081060:CDS |
| CATGGGAGTGCCTGTTGTTG+AGG | 0.530578 | 1_2:+59588889 | Msa0081060:CDS |
| CATTGAGCCTCTGCTTCTGA+GGG | 0.532841 | 1_2:-59588991 | None:intergenic |
| CGTCAAACCCGCGGTAGCCT+CGG | 0.539383 | 1_2:-59588539 | None:intergenic |
| TCCCGCGCACTCTCCTGTAA+AGG | 0.554282 | 1_2:-59587267 | None:intergenic |
| GAATTACACTGGCTTCATCC+CGG | 0.555023 | 1_2:-59588247 | None:intergenic |
| GTCATTTCAGGCTGACAACA+AGG | 0.555566 | 1_2:+59588669 | Msa0081060:intron |
| ATTCTCATTCAAACAACGAT+GGG | 0.565501 | 1_2:+59587359 | Msa0081060:exon |
| TAATGCTCCCAAATCAATGA+AGG | 0.565914 | 1_2:+59587528 | Msa0081060:CDS |
| CACCTTTACAGGAGAGTGCG+CGG | 0.572258 | 1_2:+59587265 | Msa0081060:five_prime_UTR |
| AAAGAGAGCCGAGGCTACCG+CGG | 0.575078 | 1_2:+59588531 | Msa0081060:CDS |
| GAAATGTTGACTAATGAAGC+TGG | 0.580121 | 1_2:+59587725 | Msa0081060:CDS |
| AAGAGAGCCGAGGCTACCGC+GGG | 0.585100 | 1_2:+59588532 | Msa0081060:CDS |
| AATTCTCATTCAAACAACGA+TGG | 0.591195 | 1_2:+59587358 | Msa0081060:exon |
| TCTTGATTCTTCATCTCCGG+TGG | 0.593963 | 1_2:-59588391 | None:intergenic |
| GGGTTTGACGGAAGCTCTAG+AGG | 0.596065 | 1_2:+59588552 | Msa0081060:CDS |
| GCAGGCACCCTCAGAAGCAG+AGG | 0.611684 | 1_2:+59588984 | Msa0081060:intron |
| ACCTTTACAGGAGAGTGCGC+GGG | 0.621575 | 1_2:+59587266 | Msa0081060:five_prime_UTR |
| ATTCAGTAAACGGACAGTGA+AGG | 0.645257 | 1_2:+59588705 | Msa0081060:CDS |
| TAGAGCTTCCGTCAAACCCG+CGG | 0.656861 | 1_2:-59588548 | None:intergenic |
| CAGTCTCTCAAAGAGAGCCG+AGG | 0.661691 | 1_2:+59588522 | Msa0081060:intron |
| ATTTGCAAGGAATGTTTGCG+CGG | 0.671541 | 1_2:+59588205 | Msa0081060:CDS |
| TAATGTGAATTGGAGTGTGA+CGG | 0.675611 | 1_2:-59587326 | None:intergenic |
| GTTTGAATGAGAATTTGCAG+AGG | 0.689167 | 1_2:-59587350 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATGTTGATTAATTTTT+AGG | + | chr1_2:59587483-59587502 | Msa0081060:intron | 10.0% |
| !!! | TTAATGTTGATTAATTTTTA+GGG | + | chr1_2:59587484-59587503 | Msa0081060:intron | 10.0% |
| !!! | TTTAATGTTGATTAATTTTT+AGG | + | chr1_2:59587483-59587502 | Msa0081060:intron | 10.0% |
| !!! | TTAATGTTGATTAATTTTTA+GGG | + | chr1_2:59587484-59587503 | Msa0081060:intron | 10.0% |
| !!! | TTTTGTTTAATTTTTCTGTA+AGG | + | chr1_2:59588132-59588151 | Msa0081060:intron | 15.0% |
| !!! | TTTGTTTAATTTTTCTGTAA+GGG | + | chr1_2:59588133-59588152 | Msa0081060:intron | 15.0% |
| !! | ATATTGAAAAATTCAGTAAA+CGG | + | chr1_2:59588695-59588714 | Msa0081060:CDS | 15.0% |
| !! | AGTATATAATATATTCTCAA+CGG | - | chr1_2:59588818-59588837 | None:intergenic | 15.0% |
| !! | AATATATTATATACTCTTGT+AGG | + | chr1_2:59588823-59588842 | Msa0081060:intron | 15.0% |
| !!! | TTATTTATTTTTCATTTCCA+TGG | - | chr1_2:59589123-59589142 | None:intergenic | 15.0% |
| !!! | TTTTGTTTAATTTTTCTGTA+AGG | + | chr1_2:59588132-59588151 | Msa0081060:intron | 15.0% |
| !!! | TTTGTTTAATTTTTCTGTAA+GGG | + | chr1_2:59588133-59588152 | Msa0081060:intron | 15.0% |
| !! | ATATTGAAAAATTCAGTAAA+CGG | + | chr1_2:59588695-59588714 | Msa0081060:CDS | 15.0% |
| !! | AGTATATAATATATTCTCAA+CGG | - | chr1_2:59588818-59588837 | None:intergenic | 15.0% |
| !! | AATATATTATATACTCTTGT+AGG | + | chr1_2:59588823-59588842 | Msa0081060:intron | 15.0% |
| !!! | TTATTTATTTTTCATTTCCA+TGG | - | chr1_2:59589123-59589142 | None:intergenic | 15.0% |
| !! | TTTCAATTTCAACCTAAAAT+GGG | + | chr1_2:59587630-59587649 | Msa0081060:intron | 20.0% |
| !! | TAGAAGAAAATGCATTAATT+AGG | - | chr1_2:59588492-59588511 | None:intergenic | 20.0% |
| !!! | TATTATAATGGATTGAAACA+AGG | + | chr1_2:59588780-59588799 | Msa0081060:intron | 20.0% |
| !!! | TATCATTTTAGTTTTCAAGA+AGG | - | chr1_2:59589067-59589086 | None:intergenic | 20.0% |
| !! | TTTCAATTTCAACCTAAAAT+GGG | + | chr1_2:59587630-59587649 | Msa0081060:intron | 20.0% |
| !! | TAGAAGAAAATGCATTAATT+AGG | - | chr1_2:59588492-59588511 | None:intergenic | 20.0% |
| !!! | TATTATAATGGATTGAAACA+AGG | + | chr1_2:59588780-59588799 | Msa0081060:intron | 20.0% |
| !!! | TATCATTTTAGTTTTCAAGA+AGG | - | chr1_2:59589067-59589086 | None:intergenic | 20.0% |
| ! | GAAATTGAGAGAAAAATAGA+GGG | - | chr1_2:59587407-59587426 | None:intergenic | 25.0% |
| ! | AACAAATTCGAATCTTACTT+TGG | + | chr1_2:59587553-59587572 | Msa0081060:CDS | 25.0% |
| ! | GTTTCAATTTCAACCTAAAA+TGG | + | chr1_2:59587629-59587648 | Msa0081060:intron | 25.0% |
| !! | ATCAACATTTAACCCATTTT+AGG | - | chr1_2:59587645-59587664 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTAGATTGTTGT+GGG | + | chr1_2:59587689-59587708 | Msa0081060:intron | 25.0% |
| ! | GTAGTAATTAAATCTCTTAG+TGG | + | chr1_2:59587764-59587783 | Msa0081060:intron | 25.0% |
| ! | ATAAACTGAATATCCAAACA+GGG | - | chr1_2:59587813-59587832 | None:intergenic | 25.0% |
| ! | AATAAACTGAATATCCAAAC+AGG | - | chr1_2:59587814-59587833 | None:intergenic | 25.0% |
| ! | AAACAACTGAACACAATTAA+GGG | - | chr1_2:59588114-59588133 | None:intergenic | 25.0% |
| ! | AAAACAACTGAACACAATTA+AGG | - | chr1_2:59588115-59588134 | None:intergenic | 25.0% |
| !! | GAATTTTATAGTCATTTGCA+AGG | + | chr1_2:59588192-59588211 | Msa0081060:intron | 25.0% |
| ! | AAAAAGAAGAAGAATTACAC+TGG | - | chr1_2:59588261-59588280 | None:intergenic | 25.0% |
| !!! | TATCCAGATATGTTTTTGAT+GGG | + | chr1_2:59588365-59588384 | Msa0081060:intron | 25.0% |
| ! | GAGATATCTTGTATTAAATC+AGG | + | chr1_2:59588619-59588638 | Msa0081060:intron | 25.0% |
| !!! | AAAAGACTTTTAAGACTCAT+GGG | + | chr1_2:59588872-59588891 | Msa0081060:CDS | 25.0% |
| ! | GAAATTGAGAGAAAAATAGA+GGG | - | chr1_2:59587407-59587426 | None:intergenic | 25.0% |
| ! | AACAAATTCGAATCTTACTT+TGG | + | chr1_2:59587553-59587572 | Msa0081060:CDS | 25.0% |
| ! | GTTTCAATTTCAACCTAAAA+TGG | + | chr1_2:59587629-59587648 | Msa0081060:intron | 25.0% |
| !! | ATCAACATTTAACCCATTTT+AGG | - | chr1_2:59587645-59587664 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTAGATTGTTGT+GGG | + | chr1_2:59587689-59587708 | Msa0081060:intron | 25.0% |
| ! | GTAGTAATTAAATCTCTTAG+TGG | + | chr1_2:59587764-59587783 | Msa0081060:intron | 25.0% |
| ! | ATAAACTGAATATCCAAACA+GGG | - | chr1_2:59587813-59587832 | None:intergenic | 25.0% |
| ! | AATAAACTGAATATCCAAAC+AGG | - | chr1_2:59587814-59587833 | None:intergenic | 25.0% |
| ! | AAACAACTGAACACAATTAA+GGG | - | chr1_2:59588114-59588133 | None:intergenic | 25.0% |
| ! | AAAACAACTGAACACAATTA+AGG | - | chr1_2:59588115-59588134 | None:intergenic | 25.0% |
| !! | GAATTTTATAGTCATTTGCA+AGG | + | chr1_2:59588192-59588211 | Msa0081060:intron | 25.0% |
| ! | AAAAAGAAGAAGAATTACAC+TGG | - | chr1_2:59588261-59588280 | None:intergenic | 25.0% |
| !!! | TATCCAGATATGTTTTTGAT+GGG | + | chr1_2:59588365-59588384 | Msa0081060:intron | 25.0% |
| ! | GAGATATCTTGTATTAAATC+AGG | + | chr1_2:59588619-59588638 | Msa0081060:intron | 25.0% |
| !!! | AAAAGACTTTTAAGACTCAT+GGG | + | chr1_2:59588872-59588891 | Msa0081060:CDS | 25.0% |
| AATTCTCATTCAAACAACGA+TGG | + | chr1_2:59587358-59587377 | Msa0081060:exon | 30.0% | |
| ATTCTCATTCAAACAACGAT+GGG | + | chr1_2:59587359-59587378 | Msa0081060:exon | 30.0% | |
| CGAAATTGAGAGAAAAATAG+AGG | - | chr1_2:59587408-59587427 | None:intergenic | 30.0% | |
| !! | TTGTTCTCCTTCATTGATTT+GGG | - | chr1_2:59587538-59587557 | None:intergenic | 30.0% |
| ! | TTTGTTCTCCTTCATTGATT+TGG | - | chr1_2:59587539-59587558 | None:intergenic | 30.0% |
| ATTTACCAGTTTCTTGTAAG+TGG | + | chr1_2:59587607-59587626 | Msa0081060:intron | 30.0% | |
| !! | GATTTTGATGTAGATTGTTG+TGG | + | chr1_2:59587688-59587707 | Msa0081060:intron | 30.0% |
| ! | TAAGCGCTTATGTGTAATTT+TGG | + | chr1_2:59587847-59587866 | Msa0081060:intron | 30.0% |
| TCCAAGATAGCTTATGAAAA+CGG | - | chr1_2:59587974-59587993 | None:intergenic | 30.0% | |
| CAAAACGACTTATTCTCATA+TGG | - | chr1_2:59588310-59588329 | None:intergenic | 30.0% | |
| !! | GTATCCAGATATGTTTTTGA+TGG | + | chr1_2:59588364-59588383 | Msa0081060:intron | 30.0% |
| AGAATCAAGAGCTGAAAAAA+CGG | + | chr1_2:59588404-59588423 | Msa0081060:CDS | 30.0% | |
| !! | CTGAAAAAACGGTATTTTTG+CGG | + | chr1_2:59588415-59588434 | Msa0081060:intron | 30.0% |
| !! | TGAAAAAACGGTATTTTTGC+GGG | + | chr1_2:59588416-59588435 | Msa0081060:intron | 30.0% |
| ! | TTGATCTTTGTTGTCATTTC+AGG | + | chr1_2:59588657-59588676 | Msa0081060:intron | 30.0% |
| !!! | AATGGATTGAAACAAGGTTT+TGG | + | chr1_2:59588786-59588805 | Msa0081060:intron | 30.0% |
| !!! | CAAAAGACTTTTAAGACTCA+TGG | + | chr1_2:59588871-59588890 | Msa0081060:CDS | 30.0% |
| AATTCTCATTCAAACAACGA+TGG | + | chr1_2:59587358-59587377 | Msa0081060:exon | 30.0% | |
| ATTCTCATTCAAACAACGAT+GGG | + | chr1_2:59587359-59587378 | Msa0081060:exon | 30.0% | |
| CGAAATTGAGAGAAAAATAG+AGG | - | chr1_2:59587408-59587427 | None:intergenic | 30.0% | |
| !! | TTGTTCTCCTTCATTGATTT+GGG | - | chr1_2:59587538-59587557 | None:intergenic | 30.0% |
| ! | TTTGTTCTCCTTCATTGATT+TGG | - | chr1_2:59587539-59587558 | None:intergenic | 30.0% |
| ATTTACCAGTTTCTTGTAAG+TGG | + | chr1_2:59587607-59587626 | Msa0081060:intron | 30.0% | |
| !! | GATTTTGATGTAGATTGTTG+TGG | + | chr1_2:59587688-59587707 | Msa0081060:intron | 30.0% |
| ! | TAAGCGCTTATGTGTAATTT+TGG | + | chr1_2:59587847-59587866 | Msa0081060:intron | 30.0% |
| TCCAAGATAGCTTATGAAAA+CGG | - | chr1_2:59587974-59587993 | None:intergenic | 30.0% | |
| CAAAACGACTTATTCTCATA+TGG | - | chr1_2:59588310-59588329 | None:intergenic | 30.0% | |
| !! | GTATCCAGATATGTTTTTGA+TGG | + | chr1_2:59588364-59588383 | Msa0081060:intron | 30.0% |
| AGAATCAAGAGCTGAAAAAA+CGG | + | chr1_2:59588404-59588423 | Msa0081060:CDS | 30.0% | |
| !! | CTGAAAAAACGGTATTTTTG+CGG | + | chr1_2:59588415-59588434 | Msa0081060:intron | 30.0% |
| !! | TGAAAAAACGGTATTTTTGC+GGG | + | chr1_2:59588416-59588435 | Msa0081060:intron | 30.0% |
| ! | TTGATCTTTGTTGTCATTTC+AGG | + | chr1_2:59588657-59588676 | Msa0081060:intron | 30.0% |
| !!! | AATGGATTGAAACAAGGTTT+TGG | + | chr1_2:59588786-59588805 | Msa0081060:intron | 30.0% |
| !!! | CAAAAGACTTTTAAGACTCA+TGG | + | chr1_2:59588871-59588890 | Msa0081060:CDS | 30.0% |
| TAATGTGAATTGGAGTGTGA+CGG | - | chr1_2:59587329-59587348 | None:intergenic | 35.0% | |
| TTGCAGAGGATAATGTGAAT+TGG | - | chr1_2:59587339-59587358 | None:intergenic | 35.0% | |
| GTTTGAATGAGAATTTGCAG+AGG | - | chr1_2:59587353-59587372 | None:intergenic | 35.0% | |
| TCAAACAACGATGGGTATTA+AGG | + | chr1_2:59587367-59587386 | Msa0081060:exon | 35.0% | |
| TAATGCTCCCAAATCAATGA+AGG | + | chr1_2:59587528-59587547 | Msa0081060:CDS | 35.0% | |
| TAGCATCAACAGCAATCTTA+CGG | - | chr1_2:59587579-59587598 | None:intergenic | 35.0% | |
| TGAAACCACTTACAAGAAAC+TGG | - | chr1_2:59587615-59587634 | None:intergenic | 35.0% | |
| ! | GAAATGTTGACTAATGAAGC+TGG | + | chr1_2:59587725-59587744 | Msa0081060:CDS | 35.0% |
| AGATAAGCTTAATCCCTGTT+TGG | + | chr1_2:59587797-59587816 | Msa0081060:intron | 35.0% | |
| ATAAGTTTCGTGAGACTGTT+TGG | - | chr1_2:59588054-59588073 | None:intergenic | 35.0% | |
| TCAAATAACCTGATCCAAAC+AGG | + | chr1_2:59588088-59588107 | Msa0081060:intron | 35.0% | |
| ! | GCATTGGTAAAAATCGACAA+GGG | - | chr1_2:59588342-59588361 | None:intergenic | 35.0% |
| !! | AGCATTGGTAAAAATCGACA+AGG | - | chr1_2:59588343-59588362 | None:intergenic | 35.0% |
| CTTCCCATCAAAAACATATC+TGG | - | chr1_2:59588371-59588390 | None:intergenic | 35.0% | |
| !! | GAAAAAACGGTATTTTTGCG+GGG | + | chr1_2:59588417-59588436 | Msa0081060:intron | 35.0% |
| ! | GAGGTATATGCATAGTTTGT+TGG | + | chr1_2:59588571-59588590 | Msa0081060:intron | 35.0% |
| AAATCAGGATATTCATCCCT+TGG | + | chr1_2:59588634-59588653 | Msa0081060:intron | 35.0% | |
| TGACAACAAAGATCAACCAA+GGG | - | chr1_2:59588653-59588672 | None:intergenic | 35.0% | |
| ATGACAACAAAGATCAACCA+AGG | - | chr1_2:59588654-59588673 | None:intergenic | 35.0% | |
| TGTACAATGAGTTCACCATT+TGG | + | chr1_2:59588944-59588963 | Msa0081060:intron | 35.0% | |
| ! | AATTTGAAGCCTTAGCCAAA+TGG | - | chr1_2:59588962-59588981 | None:intergenic | 35.0% |
| ! | AATCCTTTTCATACAGACCA+TGG | + | chr1_2:59589103-59589122 | Msa0081060:exon | 35.0% |
| TTTCCATGGTCTGTATGAAA+AGG | - | chr1_2:59589109-59589128 | None:intergenic | 35.0% | |
| TAATGTGAATTGGAGTGTGA+CGG | - | chr1_2:59587329-59587348 | None:intergenic | 35.0% | |
| TTGCAGAGGATAATGTGAAT+TGG | - | chr1_2:59587339-59587358 | None:intergenic | 35.0% | |
| GTTTGAATGAGAATTTGCAG+AGG | - | chr1_2:59587353-59587372 | None:intergenic | 35.0% | |
| TCAAACAACGATGGGTATTA+AGG | + | chr1_2:59587367-59587386 | Msa0081060:exon | 35.0% | |
| TAATGCTCCCAAATCAATGA+AGG | + | chr1_2:59587528-59587547 | Msa0081060:CDS | 35.0% | |
| TAGCATCAACAGCAATCTTA+CGG | - | chr1_2:59587579-59587598 | None:intergenic | 35.0% | |
| TGAAACCACTTACAAGAAAC+TGG | - | chr1_2:59587615-59587634 | None:intergenic | 35.0% | |
| ! | GAAATGTTGACTAATGAAGC+TGG | + | chr1_2:59587725-59587744 | Msa0081060:CDS | 35.0% |
| AGATAAGCTTAATCCCTGTT+TGG | + | chr1_2:59587797-59587816 | Msa0081060:intron | 35.0% | |
| ATAAGTTTCGTGAGACTGTT+TGG | - | chr1_2:59588054-59588073 | None:intergenic | 35.0% | |
| TCAAATAACCTGATCCAAAC+AGG | + | chr1_2:59588088-59588107 | Msa0081060:intron | 35.0% | |
| ! | GCATTGGTAAAAATCGACAA+GGG | - | chr1_2:59588342-59588361 | None:intergenic | 35.0% |
| !! | AGCATTGGTAAAAATCGACA+AGG | - | chr1_2:59588343-59588362 | None:intergenic | 35.0% |
| CTTCCCATCAAAAACATATC+TGG | - | chr1_2:59588371-59588390 | None:intergenic | 35.0% | |
| !! | GAAAAAACGGTATTTTTGCG+GGG | + | chr1_2:59588417-59588436 | Msa0081060:intron | 35.0% |
| ! | GAGGTATATGCATAGTTTGT+TGG | + | chr1_2:59588571-59588590 | Msa0081060:intron | 35.0% |
| AAATCAGGATATTCATCCCT+TGG | + | chr1_2:59588634-59588653 | Msa0081060:intron | 35.0% | |
| TGACAACAAAGATCAACCAA+GGG | - | chr1_2:59588653-59588672 | None:intergenic | 35.0% | |
| ATGACAACAAAGATCAACCA+AGG | - | chr1_2:59588654-59588673 | None:intergenic | 35.0% | |
| TGTACAATGAGTTCACCATT+TGG | + | chr1_2:59588944-59588963 | Msa0081060:intron | 35.0% | |
| ! | AATTTGAAGCCTTAGCCAAA+TGG | - | chr1_2:59588962-59588981 | None:intergenic | 35.0% |
| ! | AATCCTTTTCATACAGACCA+TGG | + | chr1_2:59589103-59589122 | Msa0081060:exon | 35.0% |
| TTTCCATGGTCTGTATGAAA+AGG | - | chr1_2:59589109-59589128 | None:intergenic | 35.0% | |
| TGACGGCAGAAAGATGAATA+AGG | - | chr1_2:59587312-59587331 | None:intergenic | 40.0% | |
| ! | GGGTTTAACGAAGCTTTTAG+CGG | + | chr1_2:59587504-59587523 | Msa0081060:intron | 40.0% |
| TAGATTGTTGTGGGAAGAAG+TGG | + | chr1_2:59587698-59587717 | Msa0081060:intron | 40.0% | |
| ATGAAGCTGGTGAAGTTACT+AGG | + | chr1_2:59587738-59587757 | Msa0081060:CDS | 40.0% | |
| !! | GCCGTTTTCATAAGCTATCT+TGG | + | chr1_2:59587970-59587989 | Msa0081060:intron | 40.0% |
| AACACAATTAAGGGCCTGTT+TGG | - | chr1_2:59588105-59588124 | None:intergenic | 40.0% | |
| ATTTGCAAGGAATGTTTGCG+CGG | + | chr1_2:59588205-59588224 | Msa0081060:CDS | 40.0% | |
| ! | ACAATCAGACTTCTAGAAGC+CGG | + | chr1_2:59588228-59588247 | Msa0081060:CDS | 40.0% |
| ACATATCTGGATACGAGCAT+TGG | - | chr1_2:59588358-59588377 | None:intergenic | 40.0% | |
| AGCTCTTGATTCTTCATCTC+CGG | - | chr1_2:59588397-59588416 | None:intergenic | 40.0% | |
| ! | TTGTTGGCGACTTTTCTATG+TGG | + | chr1_2:59588587-59588606 | Msa0081060:intron | 40.0% |
| ATTCAGTAAACGGACAGTGA+AGG | + | chr1_2:59588705-59588724 | Msa0081060:CDS | 40.0% | |
| ATGAGTTCACCATTTGGCTA+AGG | + | chr1_2:59588950-59588969 | Msa0081060:intron | 40.0% | |
| TGACGGCAGAAAGATGAATA+AGG | - | chr1_2:59587312-59587331 | None:intergenic | 40.0% | |
| ! | GGGTTTAACGAAGCTTTTAG+CGG | + | chr1_2:59587504-59587523 | Msa0081060:intron | 40.0% |
| TAGATTGTTGTGGGAAGAAG+TGG | + | chr1_2:59587698-59587717 | Msa0081060:intron | 40.0% | |
| ATGAAGCTGGTGAAGTTACT+AGG | + | chr1_2:59587738-59587757 | Msa0081060:CDS | 40.0% | |
| !! | GCCGTTTTCATAAGCTATCT+TGG | + | chr1_2:59587970-59587989 | Msa0081060:intron | 40.0% |
| AACACAATTAAGGGCCTGTT+TGG | - | chr1_2:59588105-59588124 | None:intergenic | 40.0% | |
| ATTTGCAAGGAATGTTTGCG+CGG | + | chr1_2:59588205-59588224 | Msa0081060:CDS | 40.0% | |
| ! | ACAATCAGACTTCTAGAAGC+CGG | + | chr1_2:59588228-59588247 | Msa0081060:CDS | 40.0% |
| ACATATCTGGATACGAGCAT+TGG | - | chr1_2:59588358-59588377 | None:intergenic | 40.0% | |
| AGCTCTTGATTCTTCATCTC+CGG | - | chr1_2:59588397-59588416 | None:intergenic | 40.0% | |
| ! | TTGTTGGCGACTTTTCTATG+TGG | + | chr1_2:59588587-59588606 | Msa0081060:intron | 40.0% |
| ATTCAGTAAACGGACAGTGA+AGG | + | chr1_2:59588705-59588724 | Msa0081060:CDS | 40.0% | |
| ATGAGTTCACCATTTGGCTA+AGG | + | chr1_2:59588950-59588969 | Msa0081060:intron | 40.0% | |
| ATTAAGGGCCTGTTTGGATC+AGG | - | chr1_2:59588099-59588118 | None:intergenic | 45.0% | |
| ! | CAATCAGACTTCTAGAAGCC+GGG | + | chr1_2:59588229-59588248 | Msa0081060:CDS | 45.0% |
| !! | GAATTACACTGGCTTCATCC+CGG | - | chr1_2:59588250-59588269 | None:intergenic | 45.0% |
| !! | TGTTTTTGATGGGAAGCCAC+CGG | + | chr1_2:59588375-59588394 | Msa0081060:CDS | 45.0% |
| TCTTGATTCTTCATCTCCGG+TGG | - | chr1_2:59588394-59588413 | None:intergenic | 45.0% | |
| GTCATTTCAGGCTGACAACA+AGG | + | chr1_2:59588669-59588688 | Msa0081060:intron | 45.0% | |
| GCTAAGGCTTCAAATTCTGC+AGG | + | chr1_2:59588966-59588985 | Msa0081060:intron | 45.0% | |
| TGCACTTTGCAAAGCTGGAA+AGG | + | chr1_2:59589017-59589036 | Msa0081060:CDS | 45.0% | |
| !! | CACTCTCCTGTAAAGGTGTT+TGG | - | chr1_2:59587263-59587282 | None:intergenic | 45.0% |
| ATTAAGGGCCTGTTTGGATC+AGG | - | chr1_2:59588099-59588118 | None:intergenic | 45.0% | |
| ! | CAATCAGACTTCTAGAAGCC+GGG | + | chr1_2:59588229-59588248 | Msa0081060:CDS | 45.0% |
| !! | GAATTACACTGGCTTCATCC+CGG | - | chr1_2:59588250-59588269 | None:intergenic | 45.0% |
| !! | TGTTTTTGATGGGAAGCCAC+CGG | + | chr1_2:59588375-59588394 | Msa0081060:CDS | 45.0% |
| TCTTGATTCTTCATCTCCGG+TGG | - | chr1_2:59588394-59588413 | None:intergenic | 45.0% | |
| GTCATTTCAGGCTGACAACA+AGG | + | chr1_2:59588669-59588688 | Msa0081060:intron | 45.0% | |
| GCTAAGGCTTCAAATTCTGC+AGG | + | chr1_2:59588966-59588985 | Msa0081060:intron | 45.0% | |
| TGCACTTTGCAAAGCTGGAA+AGG | + | chr1_2:59589017-59589036 | Msa0081060:CDS | 45.0% | |
| !!! | TTCAATTTTTAATATTATAA+TGG | + | chr1_2:59588768-59588787 | Msa0081060:intron | 5.0% |
| !!! | TTCAATTTTTAATATTATAA+TGG | + | chr1_2:59588768-59588787 | Msa0081060:intron | 5.0% |
| TGCAACGTCACCTCAACAAC+AGG | - | chr1_2:59588902-59588921 | None:intergenic | 50.0% | |
| CATTGAGCCTCTGCTTCTGA+GGG | - | chr1_2:59588994-59589013 | None:intergenic | 50.0% | |
| ACATTGAGCCTCTGCTTCTG+AGG | - | chr1_2:59588995-59589014 | None:intergenic | 50.0% | |
| TGTGCTGCACTTTGCAAAGC+TGG | + | chr1_2:59589012-59589031 | Msa0081060:CDS | 50.0% | |
| TGCAACGTCACCTCAACAAC+AGG | - | chr1_2:59588902-59588921 | None:intergenic | 50.0% | |
| CATTGAGCCTCTGCTTCTGA+GGG | - | chr1_2:59588994-59589013 | None:intergenic | 50.0% | |
| ACATTGAGCCTCTGCTTCTG+AGG | - | chr1_2:59588995-59589014 | None:intergenic | 50.0% | |
| TGTGCTGCACTTTGCAAAGC+TGG | + | chr1_2:59589012-59589031 | Msa0081060:CDS | 50.0% | |
| ! | CACCTTTACAGGAGAGTGCG+CGG | + | chr1_2:59587265-59587284 | Msa0081060:five_prime_UTR | 55.0% |
| ! | ACCTTTACAGGAGAGTGCGC+GGG | + | chr1_2:59587266-59587285 | Msa0081060:five_prime_UTR | 55.0% |
| CAGTCTCTCAAAGAGAGCCG+AGG | + | chr1_2:59588522-59588541 | Msa0081060:intron | 55.0% | |
| TAGAGCTTCCGTCAAACCCG+CGG | - | chr1_2:59588551-59588570 | None:intergenic | 55.0% | |
| ! | GGGTTTGACGGAAGCTCTAG+AGG | + | chr1_2:59588552-59588571 | Msa0081060:CDS | 55.0% |
| !! | CATGGGAGTGCCTGTTGTTG+AGG | + | chr1_2:59588889-59588908 | Msa0081060:CDS | 55.0% |
| ! | CACCTTTACAGGAGAGTGCG+CGG | + | chr1_2:59587265-59587284 | Msa0081060:five_prime_UTR | 55.0% |
| ! | ACCTTTACAGGAGAGTGCGC+GGG | + | chr1_2:59587266-59587285 | Msa0081060:five_prime_UTR | 55.0% |
| CAGTCTCTCAAAGAGAGCCG+AGG | + | chr1_2:59588522-59588541 | Msa0081060:intron | 55.0% | |
| TAGAGCTTCCGTCAAACCCG+CGG | - | chr1_2:59588551-59588570 | None:intergenic | 55.0% | |
| ! | GGGTTTGACGGAAGCTCTAG+AGG | + | chr1_2:59588552-59588571 | Msa0081060:CDS | 55.0% |
| !! | CATGGGAGTGCCTGTTGTTG+AGG | + | chr1_2:59588889-59588908 | Msa0081060:CDS | 55.0% |
| TCCCGCGCACTCTCCTGTAA+AGG | - | chr1_2:59587270-59587289 | None:intergenic | 60.0% | |
| AAAGAGAGCCGAGGCTACCG+CGG | + | chr1_2:59588531-59588550 | Msa0081060:CDS | 60.0% | |
| TCCCGCGCACTCTCCTGTAA+AGG | - | chr1_2:59587270-59587289 | None:intergenic | 60.0% | |
| AAAGAGAGCCGAGGCTACCG+CGG | + | chr1_2:59588531-59588550 | Msa0081060:CDS | 60.0% | |
| AAGAGAGCCGAGGCTACCGC+GGG | + | chr1_2:59588532-59588551 | Msa0081060:CDS | 65.0% | |
| CGTCAAACCCGCGGTAGCCT+CGG | - | chr1_2:59588542-59588561 | None:intergenic | 65.0% | |
| CGAGGCTACCGCGGGTTTGA+CGG | + | chr1_2:59588540-59588559 | Msa0081060:CDS | 65.0% | |
| GCAGGCACCCTCAGAAGCAG+AGG | + | chr1_2:59588984-59589003 | Msa0081060:intron | 65.0% | |
| AAGAGAGCCGAGGCTACCGC+GGG | + | chr1_2:59588532-59588551 | Msa0081060:CDS | 65.0% | |
| CGTCAAACCCGCGGTAGCCT+CGG | - | chr1_2:59588542-59588561 | None:intergenic | 65.0% | |
| CGAGGCTACCGCGGGTTTGA+CGG | + | chr1_2:59588540-59588559 | Msa0081060:CDS | 65.0% | |
| GCAGGCACCCTCAGAAGCAG+AGG | + | chr1_2:59588984-59589003 | Msa0081060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 59587262 | 59589187 | 59587262 | ID=Msa0081060;Name=Msa0081060 |
| chr1_2 | mRNA | 59587262 | 59589187 | 59587262 | ID=Msa0081060-mRNA-1;Parent=Msa0081060;Name=Msa0081060-mRNA-1;_AED=0.39;_eAED=0.39;_QI=115|1|1|1|1|1|9|83|193 |
| chr1_2 | exon | 59587262 | 59587388 | 59587262 | ID=Msa0081060-mRNA-1:exon:19330;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59587505 | 59587621 | 59587505 | ID=Msa0081060-mRNA-1:exon:19331;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59587701 | 59587759 | 59587701 | ID=Msa0081060-mRNA-1:exon:19332;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59588203 | 59588262 | 59588203 | ID=Msa0081060-mRNA-1:exon:19333;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59588372 | 59588425 | 59588372 | ID=Msa0081060-mRNA-1:exon:19334;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59588525 | 59588573 | 59588525 | ID=Msa0081060-mRNA-1:exon:19335;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59588679 | 59588726 | 59588679 | ID=Msa0081060-mRNA-1:exon:19336;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59588845 | 59588910 | 59588845 | ID=Msa0081060-mRNA-1:exon:19337;Parent=Msa0081060-mRNA-1 |
| chr1_2 | exon | 59588988 | 59589187 | 59588988 | ID=Msa0081060-mRNA-1:exon:19338;Parent=Msa0081060-mRNA-1 |
| chr1_2 | five_prime_UTR | 59587262 | 59587376 | 59587262 | ID=Msa0081060-mRNA-1:five_prime_utr;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59587377 | 59587388 | 59587377 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59587505 | 59587621 | 59587505 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59587701 | 59587759 | 59587701 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59588203 | 59588262 | 59588203 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59588372 | 59588425 | 59588372 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59588525 | 59588573 | 59588525 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59588679 | 59588726 | 59588679 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59588845 | 59588910 | 59588845 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | CDS | 59588988 | 59589104 | 59588988 | ID=Msa0081060-mRNA-1:cds;Parent=Msa0081060-mRNA-1 |
| chr1_2 | three_prime_UTR | 59589105 | 59589187 | 59589105 | ID=Msa0081060-mRNA-1:three_prime_utr;Parent=Msa0081060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
