Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051920 | sp|Q7XII4|REM41_ORYSJ | 37.097 | 124 | 77 | 1 | 510 | 632 | 193 | 316 | 2.91e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051920 | G7I3I9 | 95.133 | 637 | 14 | 2 | 1 | 637 | 1 | 620 | 0.0 | 1236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017960 | Msa0051920 | 0.953583 | 1.992798e-111 | -8.615850e-47 |
| Msa0051920 | Msa0078500 | 0.802707 | 4.938422e-49 | -8.615850e-47 |
| Msa0051920 | Msa0081060 | 0.808133 | 3.596948e-50 | -8.615850e-47 |
| Msa0051920 | Msa0125870 | 0.949178 | 2.149010e-107 | -8.615850e-47 |
| Msa0051920 | Msa0126210 | 0.804852 | 1.770051e-49 | -8.615850e-47 |
| Msa0051920 | Msa0168050 | 0.805792 | 1.125123e-49 | -8.615850e-47 |
| Msa0051920 | Msa0307280 | 0.833376 | 5.525101e-56 | -8.615850e-47 |
| Msa0051920 | Msa0343010 | 0.804900 | 1.730218e-49 | -8.615850e-47 |
| Msa0051920 | Msa0367520 | 0.829573 | 4.774322e-55 | -8.615850e-47 |
| Msa0051920 | Msa0377710 | 0.810850 | 9.389946e-51 | -8.615850e-47 |
| Msa0051920 | Msa0427930 | 0.822166 | 2.739547e-53 | -8.615850e-47 |
| Msa0051920 | Msa0518590 | 0.804780 | 1.832500e-49 | -8.615850e-47 |
| Msa0051920 | Msa0607800 | 0.810743 | 9.903498e-51 | -8.615850e-47 |
| Msa0051920 | Msa0615630 | 0.812795 | 3.542024e-51 | -8.615850e-47 |
| Msa0051920 | Msa0620500 | 0.806987 | 6.299563e-50 | -8.615850e-47 |
| Msa0051920 | Msa0648040 | 0.813831 | 2.097117e-51 | -8.615850e-47 |
| Msa0051920 | Msa0660370 | 0.840861 | 6.736146e-58 | -8.615850e-47 |
| Msa0051920 | Msa0690740 | 0.811418 | 7.071956e-51 | -8.615850e-47 |
| Msa0051920 | Msa0703600 | 0.812602 | 3.903336e-51 | -8.615850e-47 |
| Msa0051920 | Msa0709200 | 0.813611 | 2.345442e-51 | -8.615850e-47 |
| Msa0051920 | Msa0714790 | 0.809298 | 2.027829e-50 | -8.615850e-47 |
| Msa0051920 | Msa0880270 | 0.842907 | 1.941404e-58 | -8.615850e-47 |
| Msa0051920 | Msa0982650 | 0.838723 | 2.427816e-57 | -8.615850e-47 |
| Msa0051920 | Msa1003740 | 0.804133 | 2.500330e-49 | -8.615850e-47 |
| Msa0051920 | Msa1072960 | 0.837132 | 6.224802e-57 | -8.615850e-47 |
| Msa0051920 | Msa1104110 | 0.830204 | 3.350354e-55 | -8.615850e-47 |
| Msa0051920 | Msa1132530 | 0.826021 | 3.409758e-54 | -8.615850e-47 |
| Msa0051920 | Msa1147700 | 0.823938 | 1.057804e-53 | -8.615850e-47 |
| Msa0051920 | Msa1160910 | 0.828579 | 8.311713e-55 | -8.615850e-47 |
| Msa0051920 | Msa1174840 | 0.806055 | 9.905177e-50 | -8.615850e-47 |
| Msa0051920 | Msa1215980 | 0.805047 | 1.612146e-49 | -8.615850e-47 |
| Msa0051920 | Msa1218820 | 0.800788 | 1.222994e-48 | -8.615850e-47 |
| Msa0051920 | Msa1290730 | 0.812559 | 3.988100e-51 | -8.615850e-47 |
| Msa0051920 | Msa1290770 | 0.810749 | 9.875321e-51 | -8.615850e-47 |
| Msa0051920 | Msa1306640 | 0.841864 | 3.668993e-58 | -8.615850e-47 |
| Msa0051920 | Msa1315130 | 0.816822 | 4.535798e-52 | -8.615850e-47 |
| Msa0051920 | Msa1332950 | 0.800999 | 1.107472e-48 | -8.615850e-47 |
| Msa0051920 | Msa1360960 | 0.800415 | 1.456758e-48 | -8.615850e-47 |
| Msa0051920 | Msa1375280 | 0.844116 | 9.227439e-59 | -8.615850e-47 |
| Msa0051920 | Msa1462490 | 0.807603 | 4.661946e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051920 | MtrunA17_Chr1g0153281 | 95.133 | 637 | 14 | 2 | 1 | 637 | 1 | 620 | 0.0 | 1236 |
| Msa0051920 | MtrunA17_Chr8g0375091 | 40.995 | 422 | 203 | 13 | 247 | 636 | 30 | 437 | 2.55e-72 | 239 |
| Msa0051920 | MtrunA17_Chr5g0402201 | 39.401 | 434 | 195 | 17 | 237 | 635 | 2 | 402 | 1.91e-57 | 199 |
| Msa0051920 | MtrunA17_Chr8g0375241 | 28.232 | 379 | 210 | 10 | 299 | 637 | 148 | 504 | 6.23e-21 | 96.7 |
| Msa0051920 | MtrunA17_Chr8g0345191 | 28.216 | 241 | 144 | 5 | 420 | 634 | 222 | 459 | 1.12e-18 | 89.4 |
| Msa0051920 | MtrunA17_Chr8g0376741 | 24.747 | 396 | 244 | 12 | 279 | 634 | 144 | 525 | 2.41e-15 | 79.3 |
| Msa0051920 | MtrunA17_Chr8g0377061 | 38.235 | 102 | 63 | 0 | 526 | 627 | 247 | 348 | 1.32e-14 | 75.9 |
| Msa0051920 | MtrunA17_Chr8g0349271 | 33.628 | 113 | 74 | 1 | 521 | 632 | 88 | 200 | 3.14e-13 | 68.9 |
| Msa0051920 | MtrunA17_Chr1g0173571 | 33.333 | 117 | 78 | 0 | 516 | 632 | 157 | 273 | 1.47e-11 | 65.5 |
| Msa0051920 | MtrunA17_Chr7g0257771 | 37.113 | 97 | 61 | 0 | 516 | 612 | 163 | 259 | 1.57e-11 | 65.5 |
| Msa0051920 | MtrunA17_Chr1g0203401 | 36.170 | 94 | 60 | 0 | 530 | 623 | 106 | 199 | 2.44e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0051920 | AT1G45207.3 | 48.618 | 615 | 219 | 23 | 34 | 637 | 21 | 549 | 5.71e-147 | 437 |
| Msa0051920 | AT1G45207.2 | 48.148 | 621 | 219 | 25 | 34 | 637 | 21 | 555 | 4.71e-143 | 427 |
| Msa0051920 | AT4G36970.1 | 40.515 | 427 | 189 | 16 | 247 | 632 | 12 | 414 | 5.68e-44 | 163 |
| Msa0051920 | AT2G02170.3 | 27.778 | 378 | 205 | 14 | 299 | 637 | 11 | 359 | 7.48e-20 | 92.0 |
| Msa0051920 | AT2G02170.6 | 27.778 | 378 | 205 | 14 | 299 | 637 | 11 | 359 | 7.48e-20 | 92.0 |
| Msa0051920 | AT2G02170.1 | 28.302 | 371 | 212 | 11 | 299 | 637 | 136 | 484 | 1.29e-19 | 92.8 |
| Msa0051920 | AT2G02170.2 | 28.302 | 371 | 212 | 11 | 299 | 637 | 136 | 484 | 1.29e-19 | 92.8 |
| Msa0051920 | AT2G02170.5 | 28.302 | 371 | 212 | 11 | 299 | 637 | 136 | 484 | 1.29e-19 | 92.8 |
| Msa0051920 | AT2G02170.4 | 28.302 | 371 | 212 | 11 | 299 | 637 | 136 | 484 | 1.29e-19 | 92.8 |
| Msa0051920 | AT1G30320.1 | 26.064 | 376 | 202 | 14 | 296 | 637 | 175 | 508 | 8.40e-18 | 87.4 |
| Msa0051920 | AT1G67590.1 | 33.168 | 202 | 119 | 5 | 432 | 627 | 141 | 332 | 9.71e-16 | 79.7 |
| Msa0051920 | AT1G53860.1 | 23.733 | 375 | 196 | 17 | 296 | 635 | 119 | 438 | 3.67e-13 | 72.4 |
| Msa0051920 | AT1G53860.2 | 26.971 | 241 | 137 | 11 | 422 | 634 | 140 | 369 | 4.68e-13 | 71.6 |
| Msa0051920 | AT3G61260.1 | 34.615 | 104 | 67 | 1 | 530 | 632 | 109 | 212 | 3.28e-12 | 66.6 |
| Msa0051920 | AT3G57540.1 | 32.110 | 109 | 74 | 0 | 516 | 624 | 177 | 285 | 2.30e-11 | 65.9 |
| Msa0051920 | AT5G23750.2 | 31.897 | 116 | 75 | 2 | 512 | 623 | 76 | 191 | 4.55e-11 | 63.2 |
| Msa0051920 | AT5G23750.1 | 31.897 | 116 | 75 | 2 | 512 | 623 | 77 | 192 | 7.15e-11 | 62.8 |
| Msa0051920 | AT2G41870.1 | 29.661 | 118 | 83 | 0 | 516 | 633 | 155 | 272 | 9.92e-11 | 63.5 |
Find 203 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGAGATTTCGGAGTTTA+AGG | 0.138254 | 1_2:+6078643 | None:intergenic |
| TTGTTAACAATGCGTGATTT+AGG | 0.191934 | 1_2:-6078866 | Msa0051920:exon |
| GGAGAACGTTGCCGTCTAAA+TGG | 0.214560 | 1_2:-6077678 | Msa0051920:CDS |
| GAGTATCTCTTTCTCTAAAA+TGG | 0.225892 | 1_2:-6076637 | Msa0051920:CDS |
| TTACTATGTTGACACTAAAT+TGG | 0.250137 | 1_2:-6074640 | Msa0051920:three_prime_UTR |
| TTGTTTGTCCCAGGGCTAAA+AGG | 0.256081 | 1_2:-6075963 | Msa0051920:intron |
| AATAATTAAATAAGAGAAAA+TGG | 0.258158 | 1_2:+6079018 | None:intergenic |
| AGAGGCTTATTTCTAAAGTT+TGG | 0.258948 | 1_2:+6074496 | None:intergenic |
| CTTTCTCTAAAATGGATATC+AGG | 0.259197 | 1_2:-6076629 | Msa0051920:CDS |
| AGCTACCCTCTGGGCTCATC+TGG | 0.267123 | 1_2:+6076733 | None:intergenic |
| ACTGAAATTCGCTCAGAAAA+AGG | 0.296875 | 1_2:-6075308 | Msa0051920:CDS |
| GAATAGGGCCTTGTGTTTCT+TGG | 0.297375 | 1_2:+6076566 | None:intergenic |
| CTCACAAGGTTATGTCATTT+CGG | 0.298149 | 1_2:-6075228 | Msa0051920:CDS |
| GAATGCTGTAGAAGCTTAAA+AGG | 0.308753 | 1_2:+6075159 | None:intergenic |
| AATGCTAATGCAACTGGAAT+TGG | 0.310682 | 1_2:-6077934 | Msa0051920:CDS |
| TGTTAACAATGCGTGATTTA+GGG | 0.325485 | 1_2:-6078865 | Msa0051920:exon |
| CATAACCTTGTGAGAAGTTC+TGG | 0.325768 | 1_2:+6075237 | None:intergenic |
| TTACTTTCTCTTCACTCTCT+TGG | 0.327350 | 1_2:-6078951 | Msa0051920:five_prime_UTR |
| GAAGATGAACTTGCAGCATT+TGG | 0.328958 | 1_2:-6078516 | Msa0051920:CDS |
| CTGAACCTCTACCAGTGAAT+AGG | 0.332401 | 1_2:+6076550 | None:intergenic |
| TGCTTCTCTATTTCTTCATC+TGG | 0.337589 | 1_2:-6078924 | Msa0051920:five_prime_UTR |
| CATCGATTCGCATTTGCATT+TGG | 0.338837 | 1_2:+6078890 | None:intergenic |
| GAGTGAAGAGAAAGTAAATA+TGG | 0.338896 | 1_2:+6078957 | None:intergenic |
| GTGAAGTACCAGTGAGATTT+CGG | 0.355827 | 1_2:+6078634 | None:intergenic |
| GCATTAACAGCAGCAGAAAA+AGG | 0.359752 | 1_2:+6077463 | None:intergenic |
| CACCATTACCAACTTGCTTC+CGG | 0.360198 | 1_2:+6077725 | None:intergenic |
| TGACGATAATTCGGAGTTCC+AGG | 0.366291 | 1_2:+6077808 | None:intergenic |
| AGAGAAAGAAGTCCTCATAT+TGG | 0.380866 | 1_2:+6076698 | None:intergenic |
| GATGGGTTTACAAATAGTTC+TGG | 0.388906 | 1_2:-6077433 | Msa0051920:CDS |
| GGAGAAGTTTGATGCTTTCA+AGG | 0.390085 | 1_2:-6076805 | Msa0051920:CDS |
| TCTGGTGGCAATGGTGGTGG+AGG | 0.393951 | 1_2:-6077415 | Msa0051920:CDS |
| TATGGTTCAGACTAGGAAAT+CGG | 0.396156 | 1_2:-6077869 | Msa0051920:CDS |
| CTGAACAATGCTAATGCAAC+TGG | 0.402251 | 1_2:-6077940 | Msa0051920:CDS |
| CTGCGTTGTGTTTAAGTAAT+GGG | 0.406242 | 1_2:-6077699 | Msa0051920:CDS |
| GAGAAAGAAGTCCTCATATT+GGG | 0.411403 | 1_2:+6076699 | None:intergenic |
| TGAATATCATCTATAGTAGA+AGG | 0.414369 | 1_2:-6074419 | Msa0051920:three_prime_UTR |
| ACGGGTACAGTGACGGGAAC+TGG | 0.416323 | 1_2:-6077844 | Msa0051920:CDS |
| TGCCTTGTAGCCTCATCCTT+GGG | 0.421633 | 1_2:-6074560 | Msa0051920:three_prime_UTR |
| GCCGCCGGTGACGGTGTTGC+CGG | 0.428820 | 1_2:+6078784 | None:intergenic |
| CCAGCACTCGATCTTCATCT+TGG | 0.432083 | 1_2:-6076497 | Msa0051920:CDS |
| TTCGGATCCGGATCCGGATC+TGG | 0.432532 | 1_2:+6078449 | None:intergenic |
| GCTGTTAATGCCTCAGCTGA+TGG | 0.434402 | 1_2:-6077451 | Msa0051920:CDS |
| CCTTGACAATGACGATAATT+CGG | 0.435234 | 1_2:+6077799 | None:intergenic |
| TTTGCTATTTCAGATGAAGT+TGG | 0.436926 | 1_2:-6075371 | Msa0051920:intron |
| GGTTCTTCCCCTCGATTAGT+TGG | 0.437388 | 1_2:-6077907 | Msa0051920:CDS |
| TGGAGCTATGAAGAAGAGTA+TGG | 0.441511 | 1_2:-6077887 | Msa0051920:CDS |
| GGTGGTGTTGCAATGCAAAA+AGG | 0.444448 | 1_2:-6077778 | Msa0051920:CDS |
| GTGCCTTGTAGCCTCATCCT+TGG | 0.445358 | 1_2:-6074561 | Msa0051920:three_prime_UTR |
| TGAACCTCTACCAGTGAATA+GGG | 0.445517 | 1_2:+6076551 | None:intergenic |
| AGAGTGAAGATGACGGAGTC+AGG | 0.453482 | 1_2:+6078749 | None:intergenic |
| TATCAACATCACAGTTCAAA+AGG | 0.454031 | 1_2:-6078228 | Msa0051920:intron |
| TGTTTGTCCCAGGGCTAAAA+GGG | 0.458702 | 1_2:-6075962 | Msa0051920:intron |
| TGAAGACGGAAATCAACTTT+CGG | 0.459392 | 1_2:-6078186 | Msa0051920:CDS |
| TATTCGTTGTATTCGCCTGC+AGG | 0.459546 | 1_2:-6077526 | Msa0051920:CDS |
| CTGTTAATGCCTCAGCTGAT+GGG | 0.464443 | 1_2:-6077450 | Msa0051920:CDS |
| TCTGCAAATCTGTGACGGGC+AGG | 0.464852 | 1_2:+6076658 | None:intergenic |
| CAGCACTCGATCTTCATCTT+GGG | 0.467973 | 1_2:-6076496 | Msa0051920:CDS |
| AAACACAAGGCCCTATTCAC+TGG | 0.468324 | 1_2:-6076561 | Msa0051920:CDS |
| ACATGGATGCTCTCAGATGC+AGG | 0.472253 | 1_2:-6077347 | Msa0051920:CDS |
| TTTCGGAGAGCCGGCCAGAT+GGG | 0.473847 | 1_2:-6075211 | Msa0051920:CDS |
| CTTTCTGTTCAAGTGAAGCT+AGG | 0.476381 | 1_2:-6075136 | Msa0051920:intron |
| ACCACCGGCAACACCGTCAC+CGG | 0.481138 | 1_2:-6078788 | Msa0051920:CDS |
| GAGGAGCATGAGCTACCCTC+TGG | 0.483081 | 1_2:+6076723 | None:intergenic |
| ATGAACTTGCAGCATTTGGC+AGG | 0.484576 | 1_2:-6078512 | Msa0051920:CDS |
| CCAAGATGAAGATCGAGTGC+TGG | 0.484979 | 1_2:+6076497 | None:intergenic |
| AATGCAACTGGAATTGGAAC+TGG | 0.488888 | 1_2:-6077928 | Msa0051920:CDS |
| GAGAACGTTGCCGTCTAAAT+GGG | 0.489634 | 1_2:-6077677 | Msa0051920:CDS |
| AGCGGACCACTCTTCGACTT+AGG | 0.491435 | 1_2:+6077571 | None:intergenic |
| GGTGTTGCGTGTTCTTGAAC+CGG | 0.491640 | 1_2:+6078808 | None:intergenic |
| ATTTCGGAGAGCCGGCCAGA+TGG | 0.493284 | 1_2:-6075212 | Msa0051920:CDS |
| AAGCGGAGGAGAAGAGACTA+AGG | 0.494278 | 1_2:+6078717 | None:intergenic |
| TTAGGTCTCCTCAGTGGCTG+TGG | 0.494524 | 1_2:+6077589 | None:intergenic |
| GGCCAGATGGGTTCTTTGAG+TGG | 0.494804 | 1_2:-6075199 | Msa0051920:CDS |
| GTTTGATGCTTTCAAGGATG+CGG | 0.497959 | 1_2:-6076799 | Msa0051920:CDS |
| TCGGGAACGGGTACAGTGAC+GGG | 0.499090 | 1_2:-6077850 | Msa0051920:CDS |
| AGTGGTCCGCTTGGTCCACC+TGG | 0.500934 | 1_2:-6077559 | Msa0051920:CDS |
| ACTGGTACATTTCCGAGTCC+TGG | 0.502395 | 1_2:-6077826 | Msa0051920:CDS |
| TTTGTTCATAATCTTATCCA+TGG | 0.503384 | 1_2:+6075330 | None:intergenic |
| CGCATGGGAAAATTTGCAAA+AGG | 0.505130 | 1_2:-6075923 | Msa0051920:CDS |
| CTGGTGGCAATGGTGGTGGA+GGG | 0.506953 | 1_2:-6077414 | Msa0051920:CDS |
| AGTTCTGGTGGCAATGGTGG+TGG | 0.506963 | 1_2:-6077418 | Msa0051920:CDS |
| GGCCGGAAGCAAGTTGGTAA+TGG | 0.508505 | 1_2:-6077727 | Msa0051920:CDS |
| TTCTGGCAACTTGATGAGCC+TGG | 0.509969 | 1_2:+6075254 | None:intergenic |
| ATGTCCCTTCTTGAAACAGC+AGG | 0.510044 | 1_2:+6076762 | None:intergenic |
| AAGCTGGAGTGGTCCAGATC+CGG | 0.511012 | 1_2:-6078462 | Msa0051920:CDS |
| AATGGATATCAGGGATGTGC+AGG | 0.513273 | 1_2:-6076619 | Msa0051920:CDS |
| GTTCAGAAAATGTTGACAGC+TGG | 0.516670 | 1_2:-6076533 | Msa0051920:CDS |
| ACAAATAGTTCTGGTGGCAA+TGG | 0.516869 | 1_2:-6077424 | Msa0051920:CDS |
| AACCACTCAAAGAACCCATC+TGG | 0.516973 | 1_2:+6075197 | None:intergenic |
| GTTATGTCATTTCGGAGAGC+CGG | 0.517925 | 1_2:-6075220 | Msa0051920:CDS |
| TTTCTCTAAAATGGATATCA+GGG | 0.518025 | 1_2:-6076628 | Msa0051920:CDS |
| GCTCGCTCAGTTAGTGTACA+TGG | 0.518862 | 1_2:-6077364 | Msa0051920:CDS |
| CTTTATTTAATAAGCAAGAT+CGG | 0.519759 | 1_2:-6077984 | Msa0051920:CDS |
| CTCCCAAGGATGAGGCTACA+AGG | 0.522426 | 1_2:+6074558 | None:intergenic |
| GAAGGAGCAGCGATCGACGC+TGG | 0.522577 | 1_2:+6078691 | None:intergenic |
| AGTTCTGAGCGAGTTGTAAG+TGG | 0.522590 | 1_2:-6077751 | Msa0051920:CDS |
| GAGTGGTCCAGATCCGGATC+CGG | 0.526471 | 1_2:-6078456 | Msa0051920:CDS |
| CAGACTAGGAAATCGGGAAC+GGG | 0.526664 | 1_2:-6077862 | Msa0051920:CDS |
| GCGATCGACGCTGGCAGAAG+CGG | 0.528185 | 1_2:+6078700 | None:intergenic |
| CATGCTCCTCTCCCAATATG+AGG | 0.528342 | 1_2:-6076710 | Msa0051920:CDS |
| ACCAGGTTTCAGAAATCAGA+AGG | 0.529199 | 1_2:-6074711 | Msa0051920:intron |
| AATAATATATGTATGTACTT+AGG | 0.529868 | 1_2:-6074519 | Msa0051920:three_prime_UTR |
| ATGGTTCAGACTAGGAAATC+GGG | 0.530303 | 1_2:-6077868 | Msa0051920:CDS |
| TTTGATGCTTTCAAGGATGC+GGG | 0.530327 | 1_2:-6076798 | Msa0051920:CDS |
| AAGCATGCGTAACTTTGAGA+TGG | 0.532466 | 1_2:+6074362 | None:intergenic |
| GCTACCCTCTGGGCTCATCT+GGG | 0.532927 | 1_2:+6076734 | None:intergenic |
| CTTAAACTCCGAAATCTCAC+TGG | 0.541173 | 1_2:-6078642 | Msa0051920:intron |
| TGTATCGCAGCCGCCGGTGA+CGG | 0.541960 | 1_2:+6078775 | None:intergenic |
| ATCGGGAACGGGTACAGTGA+CGG | 0.542516 | 1_2:-6077851 | Msa0051920:CDS |
| GTTCTGAGCGAGTTGTAAGT+GGG | 0.543456 | 1_2:-6077750 | Msa0051920:CDS |
| TTGTTCAGATCTAACGAAGC+AGG | 0.544462 | 1_2:+6077955 | None:intergenic |
| TTGCAGCATTTGGCAGGTCA+CGG | 0.547364 | 1_2:-6078506 | Msa0051920:CDS |
| CTAGCTTCACTTGAACAGAA+AGG | 0.549094 | 1_2:+6075137 | None:intergenic |
| TTTCTTGGACCACCTTGTCA+TGG | 0.550513 | 1_2:+6076581 | None:intergenic |
| TCTGTGACGGGCAGGGAAGG+TGG | 0.550611 | 1_2:+6076666 | None:intergenic |
| AGAAGCTTAAAAGGTATGAC+AGG | 0.550969 | 1_2:+6075168 | None:intergenic |
| TATCCCCTGCTGTTTCAAGA+AGG | 0.551655 | 1_2:-6076767 | Msa0051920:CDS |
| GACGGGCAGGGAAGGTGGAG+TGG | 0.556016 | 1_2:+6076671 | None:intergenic |
| ATCGACGCTGGCAGAAGCGG+AGG | 0.556226 | 1_2:+6078703 | None:intergenic |
| TGAAACAGCAGGGGATACAT+TGG | 0.561049 | 1_2:+6076773 | None:intergenic |
| TCCGCATCTTCCCATTTAGA+CGG | 0.561076 | 1_2:+6077667 | None:intergenic |
| CTGCAAATCTGTGACGGGCA+GGG | 0.561186 | 1_2:+6076659 | None:intergenic |
| AATACGAACTCCCAAGGATG+AGG | 0.562722 | 1_2:+6074550 | None:intergenic |
| ATACTCTGCAAATCTGTGAC+GGG | 0.564896 | 1_2:+6076654 | None:intergenic |
| AAATCTGTGACGGGCAGGGA+AGG | 0.566048 | 1_2:+6076663 | None:intergenic |
| ACTGCGTTGTGTTTAAGTAA+TGG | 0.567379 | 1_2:-6077700 | Msa0051920:CDS |
| CACACGAACGGATCCTTGCA+TGG | 0.568343 | 1_2:-6077386 | Msa0051920:CDS |
| GAGTTCAGTTTCAGTCGACC+AGG | 0.570124 | 1_2:-6075272 | Msa0051920:CDS |
| TGCGTAACTTTGAGATGGAA+AGG | 0.570907 | 1_2:+6074367 | None:intergenic |
| TTGAACAGAAACTATCAAGT+AGG | 0.570919 | 1_2:+6074458 | None:intergenic |
| AGAAGTCCTCATATTGGGAG+AGG | 0.571056 | 1_2:+6076704 | None:intergenic |
| AAAGAAGCGAGCATCTTCCA+TGG | 0.572035 | 1_2:-6075347 | Msa0051920:CDS |
| GAAGAGAAAGTAAATATGGC+GGG | 0.573275 | 1_2:+6078961 | None:intergenic |
| TCAGACTAGGAAATCGGGAA+CGG | 0.573486 | 1_2:-6077863 | Msa0051920:CDS |
| TGCTGTTTCAAGAAGGGACA+TGG | 0.573943 | 1_2:-6076760 | Msa0051920:CDS |
| AGTGACATTGATTCTGAAGA+CGG | 0.574323 | 1_2:-6078200 | Msa0051920:CDS |
| TTCATAGCTCCAACTAATCG+AGG | 0.574579 | 1_2:+6077898 | None:intergenic |
| ACAAGGCACTTAGATTCTAC+CGG | 0.575457 | 1_2:+6074575 | None:intergenic |
| TAATTCGGAGTTCCAGGACT+CGG | 0.576781 | 1_2:+6077814 | None:intergenic |
| GTCGTGAGCATCGGAAGCGA+AGG | 0.577090 | 1_2:+6078673 | None:intergenic |
| TGGATTAAGAATGTCAAGAT+CGG | 0.577560 | 1_2:-6078023 | Msa0051920:intron |
| GGACCACTCCAGCTTTCACT+CGG | 0.578133 | 1_2:+6078470 | None:intergenic |
| TCTTTGAATACGAACTCCCA+AGG | 0.579359 | 1_2:+6074544 | None:intergenic |
| GGAGTCGCGGTCGTGAGCAT+CGG | 0.579540 | 1_2:+6078664 | None:intergenic |
| CATGCAAGGATCCGTTCGTG+TGG | 0.580587 | 1_2:+6077387 | None:intergenic |
| TGAAGTACAAGCACTTTAGC+CGG | 0.588600 | 1_2:-6074594 | Msa0051920:three_prime_UTR |
| AATGGGAAGATGCGGAGAGG+TGG | 0.589464 | 1_2:-6077660 | Msa0051920:CDS |
| CCGAATTATCGTCATTGTCA+AGG | 0.589710 | 1_2:-6077799 | Msa0051920:CDS |
| TCATAGCTCCAACTAATCGA+GGG | 0.590491 | 1_2:+6077899 | None:intergenic |
| TTCACGAACAACGACGCTCG+TGG | 0.590666 | 1_2:-6078841 | Msa0051920:CDS |
| TGAAGAGAAAGTAAATATGG+CGG | 0.592867 | 1_2:+6078960 | None:intergenic |
| GATACTCTGCAAATCTGTGA+CGG | 0.592988 | 1_2:+6076653 | None:intergenic |
| AGGAGCATGAGCTACCCTCT+GGG | 0.594386 | 1_2:+6076724 | None:intergenic |
| AGGAAGCCAAAATCACCGCA+TGG | 0.595215 | 1_2:-6075939 | Msa0051920:CDS |
| ATCCCCTGCTGTTTCAAGAA+GGG | 0.596120 | 1_2:-6076766 | Msa0051920:CDS |
| GCTCCGAGTGAAAGCTGGAG+TGG | 0.598646 | 1_2:-6078473 | Msa0051920:CDS |
| AAGGCCCTATTCACTGGTAG+AGG | 0.600698 | 1_2:-6076555 | Msa0051920:CDS |
| AGGACTTGTATCGCAGCCGC+CGG | 0.601139 | 1_2:+6078769 | None:intergenic |
| ACCGGCAACACCGTCACCGG+CGG | 0.601674 | 1_2:-6078785 | Msa0051920:CDS |
| GGGTTTACAAATAGTTCTGG+TGG | 0.601682 | 1_2:-6077430 | Msa0051920:CDS |
| CGCTCGTGGAGGCGTAACAC+CGG | 0.602071 | 1_2:-6078827 | Msa0051920:CDS |
| GGAAGCCAAAATCACCGCAT+GGG | 0.605836 | 1_2:-6075938 | Msa0051920:CDS |
| AAGTCGAAGAGTGGTCCGCT+TGG | 0.609344 | 1_2:-6077568 | Msa0051920:CDS |
| GCAACCCAGATGAGCCCAGA+GGG | 0.612368 | 1_2:-6076738 | Msa0051920:CDS |
| TGGAGGGCTTCCCACACGAA+CGG | 0.615766 | 1_2:-6077398 | Msa0051920:CDS |
| AACGAATAATACGCAACACC+AGG | 0.618153 | 1_2:+6077541 | None:intergenic |
| CTAACTGAGCGAGCCATGCA+AGG | 0.618650 | 1_2:+6077373 | None:intergenic |
| AGAAGAGTATGGTTCAGACT+AGG | 0.619003 | 1_2:-6077876 | Msa0051920:CDS |
| TCTTTCTCTCTAGCACTCAA+AGG | 0.621209 | 1_2:-6078143 | Msa0051920:intron |
| TGTCCCTTCTTGAAACAGCA+GGG | 0.622908 | 1_2:+6076763 | None:intergenic |
| AATAGTTCTGGTGGCAATGG+TGG | 0.623434 | 1_2:-6077421 | Msa0051920:CDS |
| TTCTGAGCGAGTTGTAAGTG+GGG | 0.623568 | 1_2:-6077749 | Msa0051920:CDS |
| GCCGTCTAAATGGGAAGATG+CGG | 0.624201 | 1_2:-6077668 | Msa0051920:CDS |
| TCAAGAACACGCAACACCAC+CGG | 0.628130 | 1_2:-6078803 | Msa0051920:CDS |
| GAATAATACGCAACACCAGG+TGG | 0.633920 | 1_2:+6077544 | None:intergenic |
| GCCGGTGACGGTGTTGCCGG+TGG | 0.640514 | 1_2:+6078787 | None:intergenic |
| CAATCGTCGATTCCTTCCCG+AGG | 0.641783 | 1_2:-6077322 | Msa0051920:intron |
| CATGGATGCTCTCAGATGCA+GGG | 0.641801 | 1_2:-6077346 | Msa0051920:CDS |
| TTGTCCCAGGGCTAAAAGGG+AGG | 0.643693 | 1_2:-6075959 | Msa0051920:intron |
| TTAGCATAACAACCTCGGGA+AGG | 0.645636 | 1_2:+6077310 | None:intergenic |
| GGATATCAGGGATGTGCAGG+TGG | 0.646158 | 1_2:-6076616 | Msa0051920:CDS |
| ATGCAAGGATCCGTTCGTGT+GGG | 0.646814 | 1_2:+6077388 | None:intergenic |
| ATTTGTAAACCCATCAGCTG+AGG | 0.649726 | 1_2:+6077441 | None:intergenic |
| GCAACACCAGGTGGACCAAG+CGG | 0.656850 | 1_2:+6077553 | None:intergenic |
| ACTCAAAGAACCCATCTGGC+CGG | 0.658538 | 1_2:+6075201 | None:intergenic |
| TCTGAGCGAGTTGTAAGTGG+GGG | 0.659759 | 1_2:-6077748 | Msa0051920:CDS |
| AGGAGACCTAAGTCGAAGAG+TGG | 0.659853 | 1_2:-6077577 | Msa0051920:CDS |
| GTCCCTTCTTGAAACAGCAG+GGG | 0.661080 | 1_2:+6076764 | None:intergenic |
| GGCAACCCAGATGAGCCCAG+AGG | 0.663230 | 1_2:-6076739 | Msa0051920:CDS |
| CATAGCTCCAACTAATCGAG+GGG | 0.663654 | 1_2:+6077900 | None:intergenic |
| AGCAGCAATACAGAAACTAG+AGG | 0.664918 | 1_2:-6075890 | Msa0051920:intron |
| AGATTCGAGAGTGAAGATGA+CGG | 0.670327 | 1_2:+6078742 | None:intergenic |
| AGTTGCCAGAACTTCTCACA+AGG | 0.671762 | 1_2:-6075242 | Msa0051920:CDS |
| AATTATCGTCATTGTCAAGG+TGG | 0.691775 | 1_2:-6077796 | Msa0051920:CDS |
| TTTCGGAGTTTAAGGAGTCG+CGG | 0.692109 | 1_2:+6078651 | None:intergenic |
| TTTCAGTTCCACAGCCACTG+AGG | 0.695040 | 1_2:-6077597 | Msa0051920:CDS |
| ACGAACAACGACGCTCGTGG+AGG | 0.699696 | 1_2:-6078838 | Msa0051920:CDS |
| CTAAATGGGAAGATGCGGAG+AGG | 0.704130 | 1_2:-6077663 | Msa0051920:CDS |
| TTCGACTTAGGTCTCCTCAG+TGG | 0.720239 | 1_2:+6077583 | None:intergenic |
| CAGCATTTGGCAGGTCACGG+TGG | 0.721166 | 1_2:-6078503 | Msa0051920:CDS |
| AACGTGTAACCATGACAAGG+TGG | 0.733238 | 1_2:-6076590 | Msa0051920:CDS |
| AAGGTGGTCCAAGAAACACA+AGG | 0.772366 | 1_2:-6076574 | Msa0051920:CDS |
| ATGAACGTGTAACCATGACA+AGG | 0.775798 | 1_2:-6076593 | Msa0051920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAATAAGAGAAAA+TGG | + | chr1_2:6074351-6074370 | None:intergenic | 10.0% |
| !!! | TATTATCTTAAGTTTCATTT+TGG | - | chr1_2:6077590-6077609 | Msa0051920:CDS | 15.0% |
| !!! | ATTATCTTAAGTTTCATTTT+GGG | - | chr1_2:6077591-6077610 | Msa0051920:CDS | 15.0% |
| !!! | ATTACTTTCCTTTATTTTTA+AGG | + | chr1_2:6077947-6077966 | None:intergenic | 15.0% |
| !!! | TACATAATTTAGAATTTGAA+GGG | - | chr1_2:6078356-6078375 | Msa0051920:CDS | 15.0% |
| !! | AATAATATATGTATGTACTT+AGG | - | chr1_2:6078847-6078866 | Msa0051920:CDS | 15.0% |
| !!! | TTTCTGTTATGATTTTGATT+CGG | + | chr1_2:6074938-6074957 | None:intergenic | 20.0% |
| !!! | TGAGTTTGTTTTTTTGTATT+TGG | - | chr1_2:6075323-6075342 | Msa0051920:CDS | 20.0% |
| !!! | CTTTATTTAATAAGCAAGAT+CGG | - | chr1_2:6075382-6075401 | Msa0051920:intron | 20.0% |
| !!! | TTTAGAATTTTAATATGCTC+TGG | - | chr1_2:6076265-6076284 | Msa0051920:intron | 20.0% |
| !!! | TTTTTTCATCTGCTAAATAA+AGG | - | chr1_2:6076958-6076977 | Msa0051920:intron | 20.0% |
| !!! | TCTTTATATGACATTGATTT+CGG | + | chr1_2:6077008-6077027 | None:intergenic | 20.0% |
| !!! | TTTTCTAGTTTGAATTGAAT+AGG | + | chr1_2:6077273-6077292 | None:intergenic | 20.0% |
| !! | AAGATAATATATGTGTATGT+AGG | + | chr1_2:6077579-6077598 | None:intergenic | 20.0% |
| !! | TATGATGAAGTAAAAAAAAG+TGG | + | chr1_2:6077847-6077866 | None:intergenic | 20.0% |
| !!! | CTACATAATTTAGAATTTGA+AGG | - | chr1_2:6078355-6078374 | Msa0051920:CDS | 20.0% |
| !! | ATAGTAATTTAGTAAACTTG+AGG | + | chr1_2:6078551-6078570 | None:intergenic | 20.0% |
| !! | TGTAAGTTATGCAAATTTAA+TGG | + | chr1_2:6078589-6078608 | None:intergenic | 20.0% |
| !!! | TTCTTTATGCTTTTTGATTA+AGG | - | chr1_2:6078618-6078637 | Msa0051920:intron | 20.0% |
| ! | AAAAAGTGAGAAAAAGAAAG+TGG | + | chr1_2:6075071-6075090 | None:intergenic | 25.0% |
| ! | ATTCATTAAATCAGAGTCTT+TGG | - | chr1_2:6076312-6076331 | Msa0051920:intron | 25.0% |
| !!! | TATGTTTTGAATCTGATTTG+CGG | - | chr1_2:6076365-6076384 | Msa0051920:intron | 25.0% |
| !!! | TTTTCTTTTCTTTTTCACGT+TGG | - | chr1_2:6076524-6076543 | Msa0051920:CDS | 25.0% |
| !!! | TTTCTCTAAAATGGATATCA+GGG | - | chr1_2:6076738-6076757 | Msa0051920:CDS | 25.0% |
| !!! | CACTAAATTTGCTATGTTAT+TGG | - | chr1_2:6077157-6077176 | Msa0051920:intron | 25.0% |
| ! | TTATTACCACCTTTCAAATA+TGG | - | chr1_2:6077233-6077252 | Msa0051920:intron | 25.0% |
| !!! | AAAACTCATATTACTGACTT+AGG | - | chr1_2:6077340-6077359 | Msa0051920:CDS | 25.0% |
| !!! | TATTGACTTGCTTTTACTAT+TGG | - | chr1_2:6077700-6077719 | Msa0051920:CDS | 25.0% |
| !!! | ATTGACTTGCTTTTACTATT+GGG | - | chr1_2:6077701-6077720 | Msa0051920:CDS | 25.0% |
| !!! | CCTTTATTTTTAAGGAGAAA+GGG | + | chr1_2:6077939-6077958 | None:intergenic | 25.0% |
| !!! | TCCTTTATTTTTAAGGAGAA+AGG | + | chr1_2:6077940-6077959 | None:intergenic | 25.0% |
| ! | TTTGTTCATAATCTTATCCA+TGG | + | chr1_2:6078039-6078058 | None:intergenic | 25.0% |
| ! | ATTGTATGCTAATATATTCG+TGG | - | chr1_2:6078289-6078308 | Msa0051920:intron | 25.0% |
| ! | TTACACATAACCTAAAACTA+TGG | + | chr1_2:6078403-6078422 | None:intergenic | 25.0% |
| !! | AAAAAGCATAAAGAAGAACA+AGG | + | chr1_2:6078613-6078632 | None:intergenic | 25.0% |
| ! | TTACTATGTTGACACTAAAT+TGG | - | chr1_2:6078726-6078745 | Msa0051920:CDS | 25.0% |
| ! | TGAATATCATCTATAGTAGA+AGG | - | chr1_2:6078947-6078966 | Msa0051920:five_prime_UTR | 25.0% |
| TGAAGAGAAAGTAAATATGG+CGG | + | chr1_2:6074409-6074428 | None:intergenic | 30.0% | |
| GAGTGAAGAGAAAGTAAATA+TGG | + | chr1_2:6074412-6074431 | None:intergenic | 30.0% | |
| TTGTTAACAATGCGTGATTT+AGG | - | chr1_2:6074500-6074519 | Msa0051920:three_prime_UTR | 30.0% | |
| TGTTAACAATGCGTGATTTA+GGG | - | chr1_2:6074501-6074520 | Msa0051920:three_prime_UTR | 30.0% | |
| !!! | TTATGATTTTGATTCGGATC+CGG | + | chr1_2:6074932-6074951 | None:intergenic | 30.0% |
| GGAAAAGCAGAAAAAACAAA+AGG | - | chr1_2:6075016-6075035 | Msa0051920:intron | 30.0% | |
| TATCAACATCACAGTTCAAA+AGG | - | chr1_2:6075138-6075157 | Msa0051920:three_prime_UTR | 30.0% | |
| TGGATTAAGAATGTCAAGAT+CGG | - | chr1_2:6075343-6075362 | Msa0051920:CDS | 30.0% | |
| TAAGATTAGCATAACAACCT+CGG | + | chr1_2:6076064-6076083 | None:intergenic | 30.0% | |
| TCACAACTCAAAACTAGATA+AGG | + | chr1_2:6076113-6076132 | None:intergenic | 30.0% | |
| CTGTATTAACTATTGTGATG+TGG | - | chr1_2:6076194-6076213 | Msa0051920:intron | 30.0% | |
| AGAGTCTTTGGATGAAAATT+GGG | - | chr1_2:6076324-6076343 | Msa0051920:intron | 30.0% | |
| ! | GCATAATAGTTTTCATAACG+TGG | + | chr1_2:6076417-6076436 | None:intergenic | 30.0% |
| CACATAATACTAACATGACA+TGG | + | chr1_2:6076469-6076488 | None:intergenic | 30.0% | |
| ! | GAGTATCTCTTTCTCTAAAA+TGG | - | chr1_2:6076729-6076748 | Msa0051920:CDS | 30.0% |
| !! | CTTTCTCTAAAATGGATATC+AGG | - | chr1_2:6076737-6076756 | Msa0051920:CDS | 30.0% |
| TATAATTTCAAGGTAGCTCA+TGG | + | chr1_2:6077103-6077122 | None:intergenic | 30.0% | |
| TGAGCTACCTTGAAATTATA+TGG | - | chr1_2:6077103-6077122 | Msa0051920:intron | 30.0% | |
| CTACCTTGAAATTATATGGT+TGG | - | chr1_2:6077107-6077126 | Msa0051920:intron | 30.0% | |
| ACTCCAACCATATAATTTCA+AGG | + | chr1_2:6077113-6077132 | None:intergenic | 30.0% | |
| CAATCAGTACCATATTTGAA+AGG | + | chr1_2:6077245-6077264 | None:intergenic | 30.0% | |
| CTAGTTTGAATTGAATAGGA+TGG | + | chr1_2:6077269-6077288 | None:intergenic | 30.0% | |
| !! | AGTAAATTTTGTTTGTCCCA+GGG | - | chr1_2:6077395-6077414 | Msa0051920:CDS | 30.0% |
| TAAACAAAGAACCACTTGAA+GGG | - | chr1_2:6077499-6077518 | Msa0051920:CDS | 30.0% | |
| TACATAAAAATCCCTTCAAG+TGG | + | chr1_2:6077513-6077532 | None:intergenic | 30.0% | |
| !!! | TCCCTTGTTTTCTTTATTTC+AGG | - | chr1_2:6077618-6077637 | Msa0051920:CDS | 30.0% |
| CCCTGAAATAAAGAAAACAA+GGG | + | chr1_2:6077622-6077641 | None:intergenic | 30.0% | |
| !!! | CCCTTGTTTTCTTTATTTCA+GGG | - | chr1_2:6077619-6077638 | Msa0051920:CDS | 30.0% |
| ACCCTGAAATAAAGAAAACA+AGG | + | chr1_2:6077623-6077642 | None:intergenic | 30.0% | |
| AAATTGAACTTAGGGAAAGA+GGG | + | chr1_2:6077658-6077677 | None:intergenic | 30.0% | |
| TCTTTCCCTAAGTTCAATTT+CGG | - | chr1_2:6077658-6077677 | Msa0051920:CDS | 30.0% | |
| CCCTTTCTCCTTAAAAATAA+AGG | - | chr1_2:6077936-6077955 | Msa0051920:CDS | 30.0% | |
| !! | TTTGCTATTTCAGATGAAGT+TGG | - | chr1_2:6077995-6078014 | Msa0051920:CDS | 30.0% |
| AGCATACAATTCATCTTACT+AGG | + | chr1_2:6078279-6078298 | None:intergenic | 30.0% | |
| ! | GTCAATTGTACCATAGTTTT+AGG | - | chr1_2:6078390-6078409 | Msa0051920:CDS | 30.0% |
| TAGGTTATGTGTAAGTGTAA+AGG | - | chr1_2:6078409-6078428 | Msa0051920:CDS | 30.0% | |
| ATTTAATGGCAAGTAGGTAA+GGG | + | chr1_2:6078575-6078594 | None:intergenic | 30.0% | |
| AATTTAATGGCAAGTAGGTA+AGG | + | chr1_2:6078576-6078595 | None:intergenic | 30.0% | |
| ATGCAAATTTAATGGCAAGT+AGG | + | chr1_2:6078581-6078600 | None:intergenic | 30.0% | |
| !! | AGAGGCTTATTTCTAAAGTT+TGG | + | chr1_2:6078873-6078892 | None:intergenic | 30.0% |
| ! | AGGAAAAAGAGTACAAAAAG+AGG | + | chr1_2:6078891-6078910 | None:intergenic | 30.0% |
| TTGAACAGAAACTATCAAGT+AGG | + | chr1_2:6078911-6078930 | None:intergenic | 30.0% | |
| GAAGAGAAAGTAAATATGGC+GGG | + | chr1_2:6074408-6074427 | None:intergenic | 35.0% | |
| TTACTTTCTCTTCACTCTCT+TGG | - | chr1_2:6074415-6074434 | Msa0051920:three_prime_UTR | 35.0% | |
| ! | TGCTTCTCTATTTCTTCATC+TGG | - | chr1_2:6074442-6074461 | Msa0051920:three_prime_UTR | 35.0% |
| !! | AGTGACATTGATTCTGAAGA+CGG | - | chr1_2:6075166-6075185 | Msa0051920:exon | 35.0% |
| TGAAGACGGAAATCAACTTT+CGG | - | chr1_2:6075180-6075199 | Msa0051920:CDS | 35.0% | |
| AATGCTAATGCAACTGGAAT+TGG | - | chr1_2:6075432-6075451 | Msa0051920:intron | 35.0% | |
| TATGGTTCAGACTAGGAAAT+CGG | - | chr1_2:6075497-6075516 | Msa0051920:intron | 35.0% | |
| CCTTGACAATGACGATAATT+CGG | + | chr1_2:6075570-6075589 | None:intergenic | 35.0% | |
| AATTATCGTCATTGTCAAGG+TGG | - | chr1_2:6075570-6075589 | Msa0051920:intron | 35.0% | |
| ACTGCGTTGTGTTTAAGTAA+TGG | - | chr1_2:6075666-6075685 | Msa0051920:intron | 35.0% | |
| CTGCGTTGTGTTTAAGTAAT+GGG | - | chr1_2:6075667-6075686 | Msa0051920:intron | 35.0% | |
| ! | GATGGGTTTACAAATAGTTC+TGG | - | chr1_2:6075933-6075952 | Msa0051920:CDS | 35.0% |
| AAGATTAGCATAACAACCTC+GGG | + | chr1_2:6076063-6076082 | None:intergenic | 35.0% | |
| CAGAGTCTTTGGATGAAAAT+TGG | - | chr1_2:6076323-6076342 | Msa0051920:intron | 35.0% | |
| ATATCATGAACGCAGAAGTA+TGG | + | chr1_2:6076501-6076520 | None:intergenic | 35.0% | |
| CAAACTTCTCCTCTGTAAAT+TGG | + | chr1_2:6076552-6076571 | None:intergenic | 35.0% | |
| GAGAAAGAAGTCCTCATATT+GGG | + | chr1_2:6076670-6076689 | None:intergenic | 35.0% | |
| AGAGAAAGAAGTCCTCATAT+TGG | + | chr1_2:6076671-6076690 | None:intergenic | 35.0% | |
| GGGAAAACTTCACTTCTTAT+TGG | + | chr1_2:6077036-6077055 | None:intergenic | 35.0% | |
| TCAGTACCATATTTGAAAGG+TGG | + | chr1_2:6077242-6077261 | None:intergenic | 35.0% | |
| CTGGGACAAACAAAATTTAC+TGG | + | chr1_2:6077396-6077415 | None:intergenic | 35.0% | |
| !! | CAGTAAATTTTGTTTGTCCC+AGG | - | chr1_2:6077394-6077413 | Msa0051920:CDS | 35.0% |
| ! | CTTTTGCAAATTTTCCCATG+CGG | + | chr1_2:6077445-6077464 | None:intergenic | 35.0% |
| GTAAACAAAGAACCACTTGA+AGG | - | chr1_2:6077498-6077517 | Msa0051920:CDS | 35.0% | |
| ATGTAGGAGCAATAATTGCT+TGG | + | chr1_2:6077563-6077582 | None:intergenic | 35.0% | |
| GAAATTGAACTTAGGGAAAG+AGG | + | chr1_2:6077659-6077678 | None:intergenic | 35.0% | |
| GATGACCGAAATTGAACTTA+GGG | + | chr1_2:6077666-6077685 | None:intergenic | 35.0% | |
| AGATGACCGAAATTGAACTT+AGG | + | chr1_2:6077667-6077686 | None:intergenic | 35.0% | |
| !! | GTCTTGTCGGTTTAAGATAA+TGG | + | chr1_2:6077764-6077783 | None:intergenic | 35.0% |
| ! | TAAACCGACAAGACTAGTTA+TGG | - | chr1_2:6077770-6077789 | Msa0051920:CDS | 35.0% |
| !! | TAGTCCATAACTAGTCTTGT+CGG | + | chr1_2:6077777-6077796 | None:intergenic | 35.0% |
| ! | ATGGACTAATGTCATTACTG+TGG | - | chr1_2:6077789-6077808 | Msa0051920:CDS | 35.0% |
| TGGACTAATGTCATTACTGT+GGG | - | chr1_2:6077790-6077809 | Msa0051920:CDS | 35.0% | |
| AAAGGGATTCTTAATGCATG+CGG | + | chr1_2:6077922-6077941 | None:intergenic | 35.0% | |
| ACTGAAATTCGCTCAGAAAA+AGG | - | chr1_2:6078058-6078077 | Msa0051920:intron | 35.0% | |
| ! | CTCACAAGGTTATGTCATTT+CGG | - | chr1_2:6078138-6078157 | Msa0051920:intron | 35.0% |
| ! | AGAAGCTTAAAAGGTATGAC+AGG | + | chr1_2:6078201-6078220 | None:intergenic | 35.0% |
| GAATGCTGTAGAAGCTTAAA+AGG | + | chr1_2:6078210-6078229 | None:intergenic | 35.0% | |
| CAATTCATCTTACTAGGACA+AGG | + | chr1_2:6078273-6078292 | None:intergenic | 35.0% | |
| TAAGATTCGGATGTAAGAGA+AGG | + | chr1_2:6078511-6078530 | None:intergenic | 35.0% | |
| TTACATCCGAATCTTATCCA+TGG | - | chr1_2:6078515-6078534 | Msa0051920:CDS | 35.0% | |
| TACATCCGAATCTTATCCAT+GGG | - | chr1_2:6078516-6078535 | Msa0051920:CDS | 35.0% | |
| CAAAACCCATGGATAAGATT+CGG | + | chr1_2:6078524-6078543 | None:intergenic | 35.0% | |
| !! | CATCGATTCGCATTTGCATT+TGG | + | chr1_2:6074479-6074498 | None:intergenic | 40.0% |
| AGATTCGAGAGTGAAGATGA+CGG | + | chr1_2:6074627-6074646 | None:intergenic | 40.0% | |
| CAGTGAGATTTCGGAGTTTA+AGG | + | chr1_2:6074726-6074745 | None:intergenic | 40.0% | |
| CTTAAACTCCGAAATCTCAC+TGG | - | chr1_2:6074724-6074743 | Msa0051920:intron | 40.0% | |
| ! | GTGAAGTACCAGTGAGATTT+CGG | + | chr1_2:6074735-6074754 | None:intergenic | 40.0% |
| GAAGATGAACTTGCAGCATT+TGG | - | chr1_2:6074850-6074869 | Msa0051920:intron | 40.0% | |
| TCTTTCTCTCTAGCACTCAA+AGG | - | chr1_2:6075223-6075242 | Msa0051920:CDS | 40.0% | |
| TTGTTCAGATCTAACGAAGC+AGG | + | chr1_2:6075414-6075433 | None:intergenic | 40.0% | |
| CTGAACAATGCTAATGCAAC+TGG | - | chr1_2:6075426-6075445 | Msa0051920:intron | 40.0% | |
| AATGCAACTGGAATTGGAAC+TGG | - | chr1_2:6075438-6075457 | Msa0051920:intron | 40.0% | |
| TCATAGCTCCAACTAATCGA+GGG | + | chr1_2:6075470-6075489 | None:intergenic | 40.0% | |
| TTCATAGCTCCAACTAATCG+AGG | + | chr1_2:6075471-6075490 | None:intergenic | 40.0% | |
| TGGAGCTATGAAGAAGAGTA+TGG | - | chr1_2:6075479-6075498 | Msa0051920:intron | 40.0% | |
| ! | AGAAGAGTATGGTTCAGACT+AGG | - | chr1_2:6075490-6075509 | Msa0051920:intron | 40.0% |
| ATGGTTCAGACTAGGAAATC+GGG | - | chr1_2:6075498-6075517 | Msa0051920:intron | 40.0% | |
| CCGAATTATCGTCATTGTCA+AGG | - | chr1_2:6075567-6075586 | Msa0051920:intron | 40.0% | |
| GTGTTGCAATGCAAAAAGGT+TGG | - | chr1_2:6075592-6075611 | Msa0051920:intron | 40.0% | |
| !! | GTGGATTTTGAGTCCTGTTT+CGG | - | chr1_2:6075725-6075744 | Msa0051920:intron | 40.0% |
| !! | TGGATTTTGAGTCCTGTTTC+GGG | - | chr1_2:6075726-6075745 | Msa0051920:intron | 40.0% |
| AACGAATAATACGCAACACC+AGG | + | chr1_2:6075828-6075847 | None:intergenic | 40.0% | |
| GCATTAACAGCAGCAGAAAA+AGG | + | chr1_2:6075906-6075925 | None:intergenic | 40.0% | |
| ATTTGTAAACCCATCAGCTG+AGG | + | chr1_2:6075928-6075947 | None:intergenic | 40.0% | |
| !! | GGGTTTACAAATAGTTCTGG+TGG | - | chr1_2:6075936-6075955 | Msa0051920:CDS | 40.0% |
| !! | ACAAATAGTTCTGGTGGCAA+TGG | - | chr1_2:6075942-6075961 | Msa0051920:CDS | 40.0% |
| ! | TGTGATGTGGATTGAACTCT+TGG | - | chr1_2:6076207-6076226 | Msa0051920:intron | 40.0% |
| GGAGAAGTTTGATGCTTTCA+AGG | - | chr1_2:6076561-6076580 | Msa0051920:CDS | 40.0% | |
| GTTTGATGCTTTCAAGGATG+CGG | - | chr1_2:6076567-6076586 | Msa0051920:CDS | 40.0% | |
| TTTGATGCTTTCAAGGATGC+GGG | - | chr1_2:6076568-6076587 | Msa0051920:CDS | 40.0% | |
| ATACTCTGCAAATCTGTGAC+GGG | + | chr1_2:6076715-6076734 | None:intergenic | 40.0% | |
| GATACTCTGCAAATCTGTGA+CGG | + | chr1_2:6076716-6076735 | None:intergenic | 40.0% | |
| ATGAACGTGTAACCATGACA+AGG | - | chr1_2:6076773-6076792 | Msa0051920:CDS | 40.0% | |
| TGAACCTCTACCAGTGAATA+GGG | + | chr1_2:6076818-6076837 | None:intergenic | 40.0% | |
| GTTCAGAAAATGTTGACAGC+TGG | - | chr1_2:6076833-6076852 | Msa0051920:intron | 40.0% | |
| ! | ATTTTCCCATGCGGTGATTT+TGG | + | chr1_2:6077436-6077455 | None:intergenic | 40.0% |
| CGCATGGGAAAATTTGCAAA+AGG | - | chr1_2:6077443-6077462 | Msa0051920:CDS | 40.0% | |
| AGCAGCAATACAGAAACTAG+AGG | - | chr1_2:6077476-6077495 | Msa0051920:CDS | 40.0% | |
| GATGATCACTTGAGCTAGTA+GGG | + | chr1_2:6077541-6077560 | None:intergenic | 40.0% | |
| ! | ATTACTGTGGGCTGTCTAAT+AGG | - | chr1_2:6077802-6077821 | Msa0051920:CDS | 40.0% |
| AGAAAAAGGCTCAGGAAATG+AGG | - | chr1_2:6078072-6078091 | Msa0051920:intron | 40.0% | |
| CATAACCTTGTGAGAAGTTC+TGG | + | chr1_2:6078132-6078151 | None:intergenic | 40.0% | |
| CTAGCTTCACTTGAACAGAA+AGG | + | chr1_2:6078232-6078251 | None:intergenic | 40.0% | |
| CTTTCTGTTCAAGTGAAGCT+AGG | - | chr1_2:6078230-6078249 | Msa0051920:intron | 40.0% | |
| ! | AGGAATCTGAAGCAGGAAAT+GGG | + | chr1_2:6078491-6078510 | None:intergenic | 40.0% |
| ! | AAGGAATCTGAAGCAGGAAA+TGG | + | chr1_2:6078492-6078511 | None:intergenic | 40.0% |
| ! | TAAGAGAAGGAATCTGAAGC+AGG | + | chr1_2:6078498-6078517 | None:intergenic | 40.0% |
| ACCAGGTTTCAGAAATCAGA+AGG | - | chr1_2:6078655-6078674 | Msa0051920:CDS | 40.0% | |
| !! | TCCTTCTGATTTCTGAAACC+TGG | + | chr1_2:6078659-6078678 | None:intergenic | 40.0% |
| TGAAGTACAAGCACTTTAGC+CGG | - | chr1_2:6078772-6078791 | Msa0051920:CDS | 40.0% | |
| ! | ACAAGGCACTTAGATTCTAC+CGG | + | chr1_2:6078794-6078813 | None:intergenic | 40.0% |
| TCTTTGAATACGAACTCCCA+AGG | + | chr1_2:6078825-6078844 | None:intergenic | 40.0% | |
| !! | TGCGTAACTTTGAGATGGAA+AGG | + | chr1_2:6079002-6079021 | None:intergenic | 40.0% |
| ! | AAGCATGCGTAACTTTGAGA+TGG | + | chr1_2:6079007-6079026 | None:intergenic | 40.0% |
| TTTCGGAGTTTAAGGAGTCG+CGG | + | chr1_2:6074718-6074737 | None:intergenic | 45.0% | |
| ATGAACTTGCAGCATTTGGC+AGG | - | chr1_2:6074854-6074873 | Msa0051920:intron | 45.0% | |
| ! | ATTTTGCTCCGAGTGAAAGC+TGG | - | chr1_2:6074888-6074907 | Msa0051920:intron | 45.0% |
| !!! | TTTTGATTCGGATCCGGATC+CGG | + | chr1_2:6074926-6074945 | None:intergenic | 45.0% |
| ! | CTTCGCGAAACTCTTTTCTC+TGG | - | chr1_2:6074995-6075014 | Msa0051920:intron | 45.0% |
| CATAGCTCCAACTAATCGAG+GGG | + | chr1_2:6075469-6075488 | None:intergenic | 45.0% | |
| TCAGACTAGGAAATCGGGAA+CGG | - | chr1_2:6075503-6075522 | Msa0051920:intron | 45.0% | |
| TAATTCGGAGTTCCAGGACT+CGG | + | chr1_2:6075555-6075574 | None:intergenic | 45.0% | |
| TGACGATAATTCGGAGTTCC+AGG | + | chr1_2:6075561-6075580 | None:intergenic | 45.0% | |
| !! | GGTGGTGTTGCAATGCAAAA+AGG | - | chr1_2:6075588-6075607 | Msa0051920:intron | 45.0% |
| !! | AGTTCTGAGCGAGTTGTAAG+TGG | - | chr1_2:6075615-6075634 | Msa0051920:intron | 45.0% |
| ! | GTTCTGAGCGAGTTGTAAGT+GGG | - | chr1_2:6075616-6075635 | Msa0051920:intron | 45.0% |
| TTCTGAGCGAGTTGTAAGTG+GGG | - | chr1_2:6075617-6075636 | Msa0051920:intron | 45.0% | |
| ! | CACCATTACCAACTTGCTTC+CGG | + | chr1_2:6075644-6075663 | None:intergenic | 45.0% |
| GAGAACGTTGCCGTCTAAAT+GGG | - | chr1_2:6075689-6075708 | Msa0051920:intron | 45.0% | |
| TCCGCATCTTCCCATTTAGA+CGG | + | chr1_2:6075702-6075721 | None:intergenic | 45.0% | |
| !! | GGATTTTGAGTCCTGTTTCG+GGG | - | chr1_2:6075727-6075746 | Msa0051920:intron | 45.0% |
| !! | GATTTTGAGTCCTGTTTCGG+GGG | - | chr1_2:6075728-6075747 | Msa0051920:intron | 45.0% |
| !! | ATTTTGAGTCCTGTTTCGGG+GGG | - | chr1_2:6075729-6075748 | Msa0051920:intron | 45.0% |
| GAATAATACGCAACACCAGG+TGG | + | chr1_2:6075825-6075844 | None:intergenic | 45.0% | |
| TATTCGTTGTATTCGCCTGC+AGG | - | chr1_2:6075840-6075859 | Msa0051920:intron | 45.0% | |
| CCATCAAAAAAGTGACCTGC+AGG | + | chr1_2:6075858-6075877 | None:intergenic | 45.0% | |
| !!! | CCTGCAGGTCACTTTTTTGA+TGG | - | chr1_2:6075855-6075874 | Msa0051920:intron | 45.0% |
| !!! | GCAGGTCACTTTTTTGATGG+AGG | - | chr1_2:6075858-6075877 | Msa0051920:intron | 45.0% |
| CTGTTAATGCCTCAGCTGAT+GGG | - | chr1_2:6075916-6075935 | Msa0051920:CDS | 45.0% | |
| !! | AATAGTTCTGGTGGCAATGG+TGG | - | chr1_2:6075945-6075964 | Msa0051920:CDS | 45.0% |
| TTAGCATAACAACCTCGGGA+AGG | + | chr1_2:6076059-6076078 | None:intergenic | 45.0% | |
| !! | ACGTTGGCTCCAATTTACAG+AGG | - | chr1_2:6076540-6076559 | Msa0051920:CDS | 45.0% |
| TGAAACAGCAGGGGATACAT+TGG | + | chr1_2:6076596-6076615 | None:intergenic | 45.0% | |
| !! | TATCCCCTGCTGTTTCAAGA+AGG | - | chr1_2:6076599-6076618 | Msa0051920:CDS | 45.0% |
| !! | ATCCCCTGCTGTTTCAAGAA+GGG | - | chr1_2:6076600-6076619 | Msa0051920:CDS | 45.0% |
| TGTCCCTTCTTGAAACAGCA+GGG | + | chr1_2:6076606-6076625 | None:intergenic | 45.0% | |
| ATGTCCCTTCTTGAAACAGC+AGG | + | chr1_2:6076607-6076626 | None:intergenic | 45.0% | |
| !! | TGCTGTTTCAAGAAGGGACA+TGG | - | chr1_2:6076606-6076625 | Msa0051920:CDS | 45.0% |
| AGAAGTCCTCATATTGGGAG+AGG | + | chr1_2:6076665-6076684 | None:intergenic | 45.0% | |
| AATGGATATCAGGGATGTGC+AGG | - | chr1_2:6076747-6076766 | Msa0051920:CDS | 45.0% | |
| AACGTGTAACCATGACAAGG+TGG | - | chr1_2:6076776-6076795 | Msa0051920:CDS | 45.0% | |
| TTTCTTGGACCACCTTGTCA+TGG | + | chr1_2:6076788-6076807 | None:intergenic | 45.0% | |
| AAGGTGGTCCAAGAAACACA+AGG | - | chr1_2:6076792-6076811 | Msa0051920:CDS | 45.0% | |
| ! | GAATAGGGCCTTGTGTTTCT+TGG | + | chr1_2:6076803-6076822 | None:intergenic | 45.0% |
| AAACACAAGGCCCTATTCAC+TGG | - | chr1_2:6076805-6076824 | Msa0051920:CDS | 45.0% | |
| CTGAACCTCTACCAGTGAAT+AGG | + | chr1_2:6076819-6076838 | None:intergenic | 45.0% | |
| CAGCACTCGATCTTCATCTT+GGG | - | chr1_2:6076870-6076889 | Msa0051920:intron | 45.0% | |
| TCAAGGTAGCTCATGGCATT+TGG | + | chr1_2:6077096-6077115 | None:intergenic | 45.0% | |
| TTGTTTGTCCCAGGGCTAAA+AGG | - | chr1_2:6077403-6077422 | Msa0051920:CDS | 45.0% | |
| TGTTTGTCCCAGGGCTAAAA+GGG | - | chr1_2:6077404-6077423 | Msa0051920:CDS | 45.0% | |
| GGATGATCACTTGAGCTAGT+AGG | + | chr1_2:6077542-6077561 | None:intergenic | 45.0% | |
| AAAGAAGCGAGCATCTTCCA+TGG | - | chr1_2:6078019-6078038 | Msa0051920:intron | 45.0% | |
| ATTCGCTCAGAAAAAGGCTC+AGG | - | chr1_2:6078064-6078083 | Msa0051920:intron | 45.0% | |
| AGTTGCCAGAACTTCTCACA+AGG | - | chr1_2:6078124-6078143 | Msa0051920:intron | 45.0% | |
| ! | GTTATGTCATTTCGGAGAGC+CGG | - | chr1_2:6078146-6078165 | Msa0051920:CDS | 45.0% |
| AACCACTCAAAGAACCCATC+TGG | + | chr1_2:6078172-6078191 | None:intergenic | 45.0% | |
| ! | GGAATCTGAAGCAGGAAATG+GGG | + | chr1_2:6078490-6078509 | None:intergenic | 45.0% |
| CTTGAGGCTATCAAAACCCA+TGG | + | chr1_2:6078535-6078554 | None:intergenic | 45.0% | |
| AATACGAACTCCCAAGGATG+AGG | + | chr1_2:6078819-6078838 | None:intergenic | 45.0% | |
| ! | GGTGTTGCGTGTTCTTGAAC+CGG | + | chr1_2:6074561-6074580 | None:intergenic | 50.0% |
| TCAAGAACACGCAACACCAC+CGG | - | chr1_2:6074563-6074582 | Msa0051920:three_prime_UTR | 50.0% | |
| !! | AGAGTGAAGATGACGGAGTC+AGG | + | chr1_2:6074620-6074639 | None:intergenic | 50.0% |
| AAGCGGAGGAGAAGAGACTA+AGG | + | chr1_2:6074652-6074671 | None:intergenic | 50.0% | |
| TTGCAGCATTTGGCAGGTCA+CGG | - | chr1_2:6074860-6074879 | Msa0051920:intron | 50.0% | |
| GGTTCTTCCCCTCGATTAGT+TGG | - | chr1_2:6075459-6075478 | Msa0051920:intron | 50.0% | |
| CAGACTAGGAAATCGGGAAC+GGG | - | chr1_2:6075504-6075523 | Msa0051920:intron | 50.0% | |
| ACTGGTACATTTCCGAGTCC+TGG | - | chr1_2:6075540-6075559 | Msa0051920:intron | 50.0% | |
| TCTGAGCGAGTTGTAAGTGG+GGG | - | chr1_2:6075618-6075637 | Msa0051920:intron | 50.0% | |
| GGAGAACGTTGCCGTCTAAA+TGG | - | chr1_2:6075688-6075707 | Msa0051920:intron | 50.0% | |
| GCCGTCTAAATGGGAAGATG+CGG | - | chr1_2:6075698-6075717 | Msa0051920:intron | 50.0% | |
| CTAAATGGGAAGATGCGGAG+AGG | - | chr1_2:6075703-6075722 | Msa0051920:intron | 50.0% | |
| TTTCAGTTCCACAGCCACTG+AGG | - | chr1_2:6075769-6075788 | Msa0051920:intron | 50.0% | |
| TTCGACTTAGGTCTCCTCAG+TGG | + | chr1_2:6075786-6075805 | None:intergenic | 50.0% | |
| AGGAGACCTAAGTCGAAGAG+TGG | - | chr1_2:6075789-6075808 | Msa0051920:intron | 50.0% | |
| GCTGTTAATGCCTCAGCTGA+TGG | - | chr1_2:6075915-6075934 | Msa0051920:CDS | 50.0% | |
| ATGCAAGGATCCGTTCGTGT+GGG | + | chr1_2:6075981-6076000 | None:intergenic | 50.0% | |
| GCTCGCTCAGTTAGTGTACA+TGG | - | chr1_2:6076002-6076021 | Msa0051920:intron | 50.0% | |
| ACATGGATGCTCTCAGATGC+AGG | - | chr1_2:6076019-6076038 | Msa0051920:intron | 50.0% | |
| CATGGATGCTCTCAGATGCA+GGG | - | chr1_2:6076020-6076039 | Msa0051920:intron | 50.0% | |
| GTCCCTTCTTGAAACAGCAG+GGG | + | chr1_2:6076605-6076624 | None:intergenic | 50.0% | |
| CATGCTCCTCTCCCAATATG+AGG | - | chr1_2:6076656-6076675 | Msa0051920:CDS | 50.0% | |
| AAGGCCCTATTCACTGGTAG+AGG | - | chr1_2:6076811-6076830 | Msa0051920:intron | 50.0% | |
| CCAAGATGAAGATCGAGTGC+TGG | + | chr1_2:6076872-6076891 | None:intergenic | 50.0% | |
| CCAGCACTCGATCTTCATCT+TGG | - | chr1_2:6076869-6076888 | Msa0051920:intron | 50.0% | |
| ! | AAGGGGGGAGTTGACTTCAA+CGG | + | chr1_2:6077057-6077076 | None:intergenic | 50.0% |
| TTAAGAGCAGAGCGAGAAGG+GGG | + | chr1_2:6077073-6077092 | None:intergenic | 50.0% | |
| GTTAAGAGCAGAGCGAGAAG+GGG | + | chr1_2:6077074-6077093 | None:intergenic | 50.0% | |
| GGTTAAGAGCAGAGCGAGAA+GGG | + | chr1_2:6077075-6077094 | None:intergenic | 50.0% | |
| TGGTTAAGAGCAGAGCGAGA+AGG | + | chr1_2:6077076-6077095 | None:intergenic | 50.0% | |
| AGGAAGCCAAAATCACCGCA+TGG | - | chr1_2:6077427-6077446 | Msa0051920:CDS | 50.0% | |
| GGAAGCCAAAATCACCGCAT+GGG | - | chr1_2:6077428-6077447 | Msa0051920:CDS | 50.0% | |
| GAGTTCAGTTTCAGTCGACC+AGG | - | chr1_2:6078094-6078113 | Msa0051920:intron | 50.0% | |
| TTCTGGCAACTTGATGAGCC+TGG | + | chr1_2:6078115-6078134 | None:intergenic | 50.0% | |
| ACTCAAAGAACCCATCTGGC+CGG | + | chr1_2:6078168-6078187 | None:intergenic | 50.0% | |
| TGCCTTGTAGCCTCATCCTT+GGG | - | chr1_2:6078806-6078825 | Msa0051920:CDS | 50.0% | |
| TTCACGAACAACGACGCTCG+TGG | - | chr1_2:6074525-6074544 | Msa0051920:three_prime_UTR | 55.0% | |
| GGACCACTCCAGCTTTCACT+CGG | + | chr1_2:6074899-6074918 | None:intergenic | 55.0% | |
| AAGCTGGAGTGGTCCAGATC+CGG | - | chr1_2:6074904-6074923 | Msa0051920:intron | 55.0% | |
| ATCGGGAACGGGTACAGTGA+CGG | - | chr1_2:6075515-6075534 | Msa0051920:intron | 55.0% | |
| !! | GGCCGGAAGCAAGTTGGTAA+TGG | - | chr1_2:6075639-6075658 | Msa0051920:intron | 55.0% |
| AATGGGAAGATGCGGAGAGG+TGG | - | chr1_2:6075706-6075725 | Msa0051920:intron | 55.0% | |
| TTAGGTCTCCTCAGTGGCTG+TGG | + | chr1_2:6075780-6075799 | None:intergenic | 55.0% | |
| AGCGGACCACTCTTCGACTT+AGG | + | chr1_2:6075798-6075817 | None:intergenic | 55.0% | |
| AAGTCGAAGAGTGGTCCGCT+TGG | - | chr1_2:6075798-6075817 | Msa0051920:intron | 55.0% | |
| ! | AGTTCTGGTGGCAATGGTGG+TGG | - | chr1_2:6075948-6075967 | Msa0051920:CDS | 55.0% |
| CATGCAAGGATCCGTTCGTG+TGG | + | chr1_2:6075982-6076001 | None:intergenic | 55.0% | |
| CACACGAACGGATCCTTGCA+TGG | - | chr1_2:6075980-6075999 | Msa0051920:intron | 55.0% | |
| CTAACTGAGCGAGCCATGCA+AGG | + | chr1_2:6075996-6076015 | None:intergenic | 55.0% | |
| !! | CAATCGTCGATTCCTTCCCG+AGG | - | chr1_2:6076044-6076063 | Msa0051920:intron | 55.0% |
| ! | AGGAGCATGAGCTACCCTCT+GGG | + | chr1_2:6076645-6076664 | None:intergenic | 55.0% |
| !! | AAATCTGTGACGGGCAGGGA+AGG | + | chr1_2:6076706-6076725 | None:intergenic | 55.0% |
| !! | CTGCAAATCTGTGACGGGCA+GGG | + | chr1_2:6076710-6076729 | None:intergenic | 55.0% |
| !! | TCTGCAAATCTGTGACGGGC+AGG | + | chr1_2:6076711-6076730 | None:intergenic | 55.0% |
| GGATATCAGGGATGTGCAGG+TGG | - | chr1_2:6076750-6076769 | Msa0051920:CDS | 55.0% | |
| ! | AGGGGGGAGTTGACTTCAAC+GGG | + | chr1_2:6077056-6077075 | None:intergenic | 55.0% |
| TAAGAGCAGAGCGAGAAGGG+GGG | + | chr1_2:6077072-6077091 | None:intergenic | 55.0% | |
| TTGTCCCAGGGCTAAAAGGG+AGG | - | chr1_2:6077407-6077426 | Msa0051920:CDS | 55.0% | |
| ! | GCTTCCTCCCTTTTAGCCCT+GGG | + | chr1_2:6077414-6077433 | None:intergenic | 55.0% |
| ! | GGCCAGATGGGTTCTTTGAG+TGG | - | chr1_2:6078167-6078186 | Msa0051920:CDS | 55.0% |
| AGGCTGTTGCATGCTTGACC+AGG | - | chr1_2:6078638-6078657 | Msa0051920:intron | 55.0% | |
| GTGCCTTGTAGCCTCATCCT+TGG | - | chr1_2:6078805-6078824 | Msa0051920:CDS | 55.0% | |
| CTCCCAAGGATGAGGCTACA+AGG | + | chr1_2:6078811-6078830 | None:intergenic | 55.0% | |
| ACGAACAACGACGCTCGTGG+AGG | - | chr1_2:6074528-6074547 | Msa0051920:three_prime_UTR | 60.0% | |
| AGGACTTGTATCGCAGCCGC+CGG | + | chr1_2:6074600-6074619 | None:intergenic | 60.0% | |
| !! | GTCGTGAGCATCGGAAGCGA+AGG | + | chr1_2:6074696-6074715 | None:intergenic | 60.0% |
| CAGCATTTGGCAGGTCACGG+TGG | - | chr1_2:6074863-6074882 | Msa0051920:intron | 60.0% | |
| GCTCCGAGTGAAAGCTGGAG+TGG | - | chr1_2:6074893-6074912 | Msa0051920:intron | 60.0% | |
| GAGTGGTCCAGATCCGGATC+CGG | - | chr1_2:6074910-6074929 | Msa0051920:intron | 60.0% | |
| TTCGGATCCGGATCCGGATC+TGG | + | chr1_2:6074920-6074939 | None:intergenic | 60.0% | |
| TCGGGAACGGGTACAGTGAC+GGG | - | chr1_2:6075516-6075535 | Msa0051920:intron | 60.0% | |
| ! | ACGGGTACAGTGACGGGAAC+TGG | - | chr1_2:6075522-6075541 | Msa0051920:intron | 60.0% |
| AGCGAGTTGTAAGTGGGGGC+CGG | - | chr1_2:6075622-6075641 | Msa0051920:intron | 60.0% | |
| AGTCCTGTTTCGGGGGGTGA+TGG | - | chr1_2:6075735-6075754 | Msa0051920:intron | 60.0% | |
| GTTCCATCACCCCCCGAAAC+AGG | + | chr1_2:6075741-6075760 | None:intergenic | 60.0% | |
| !! | GTTTCGGGGGGTGATGGAAC+TGG | - | chr1_2:6075741-6075760 | Msa0051920:intron | 60.0% |
| !! | GGGGGGTGATGGAACTGGAA+GGG | - | chr1_2:6075746-6075765 | Msa0051920:intron | 60.0% |
| GCAACACCAGGTGGACCAAG+CGG | + | chr1_2:6075816-6075835 | None:intergenic | 60.0% | |
| !! | TCTGGTGGCAATGGTGGTGG+AGG | - | chr1_2:6075951-6075970 | Msa0051920:CDS | 60.0% |
| !! | CTGGTGGCAATGGTGGTGGA+GGG | - | chr1_2:6075952-6075971 | Msa0051920:CDS | 60.0% |
| TGGAGGGCTTCCCACACGAA+CGG | - | chr1_2:6075968-6075987 | Msa0051920:intron | 60.0% | |
| GCAACCCAGATGAGCCCAGA+GGG | - | chr1_2:6076628-6076647 | Msa0051920:CDS | 60.0% | |
| GCTACCCTCTGGGCTCATCT+GGG | + | chr1_2:6076635-6076654 | None:intergenic | 60.0% | |
| AGCTACCCTCTGGGCTCATC+TGG | + | chr1_2:6076636-6076655 | None:intergenic | 60.0% | |
| ! | GAGGAGCATGAGCTACCCTC+TGG | + | chr1_2:6076646-6076665 | None:intergenic | 60.0% |
| ! | GGCTTCCTCCCTTTTAGCCC+TGG | + | chr1_2:6077415-6077434 | None:intergenic | 60.0% |
| ATTTCGGAGAGCCGGCCAGA+TGG | - | chr1_2:6078154-6078173 | Msa0051920:CDS | 60.0% | |
| TTTCGGAGAGCCGGCCAGAT+GGG | - | chr1_2:6078155-6078174 | Msa0051920:CDS | 60.0% | |
| ! | CGCTCGTGGAGGCGTAACAC+CGG | - | chr1_2:6074539-6074558 | Msa0051920:three_prime_UTR | 65.0% |
| ACCACCGGCAACACCGTCAC+CGG | - | chr1_2:6074578-6074597 | Msa0051920:three_prime_UTR | 65.0% | |
| TGTATCGCAGCCGCCGGTGA+CGG | + | chr1_2:6074594-6074613 | None:intergenic | 65.0% | |
| ATCGACGCTGGCAGAAGCGG+AGG | + | chr1_2:6074666-6074685 | None:intergenic | 65.0% | |
| GCGATCGACGCTGGCAGAAG+CGG | + | chr1_2:6074669-6074688 | None:intergenic | 65.0% | |
| GAAGGAGCAGCGATCGACGC+TGG | + | chr1_2:6074678-6074697 | None:intergenic | 65.0% | |
| GGAGTCGCGGTCGTGAGCAT+CGG | + | chr1_2:6074705-6074724 | None:intergenic | 65.0% | |
| AGTGGGGGCCGGAAGCAAGT+TGG | - | chr1_2:6075633-6075652 | Msa0051920:intron | 65.0% | |
| !! | CGGGGGGTGATGGAACTGGA+AGG | - | chr1_2:6075745-6075764 | Msa0051920:intron | 65.0% |
| AGTGGTCCGCTTGGTCCACC+TGG | - | chr1_2:6075807-6075826 | Msa0051920:intron | 65.0% | |
| GGCAACCCAGATGAGCCCAG+AGG | - | chr1_2:6076627-6076646 | Msa0051920:CDS | 65.0% | |
| !! | TCTGTGACGGGCAGGGAAGG+TGG | + | chr1_2:6076703-6076722 | None:intergenic | 65.0% |
| ACCGGCAACACCGTCACCGG+CGG | - | chr1_2:6074581-6074600 | Msa0051920:three_prime_UTR | 70.0% | |
| GACGGGCAGGGAAGGTGGAG+TGG | + | chr1_2:6076698-6076717 | None:intergenic | 70.0% | |
| !! | GCCGGTGACGGTGTTGCCGG+TGG | + | chr1_2:6074582-6074601 | None:intergenic | 75.0% |
| !! | GCCGCCGGTGACGGTGTTGC+CGG | + | chr1_2:6074585-6074604 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 6074342 | 6079046 | 6074342 | ID=Msa0051920;Name=Msa0051920 |
| chr1_2 | mRNA | 6074342 | 6079046 | 6074342 | ID=Msa0051920-mRNA-1;Parent=Msa0051920;Name=Msa0051920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=167|0.85|0.87|1|0.85|0.75|8|424|637 |
| chr1_2 | exon | 6074342 | 6074728 | 6074342 | ID=Msa0051920-mRNA-1:exon:1956;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6075137 | 6075380 | 6075137 | ID=Msa0051920-mRNA-1:exon:1955;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6075891 | 6075972 | 6075891 | ID=Msa0051920-mRNA-1:exon:1954;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6076465 | 6076828 | 6076465 | ID=Msa0051920-mRNA-1:exon:1953;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6077323 | 6078036 | 6077323 | ID=Msa0051920-mRNA-1:exon:1952;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6078144 | 6078236 | 6078144 | ID=Msa0051920-mRNA-1:exon:1951;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6078351 | 6078567 | 6078351 | ID=Msa0051920-mRNA-1:exon:1950;Parent=Msa0051920-mRNA-1 |
| chr1_2 | exon | 6078643 | 6079046 | 6078643 | ID=Msa0051920-mRNA-1:exon:1949;Parent=Msa0051920-mRNA-1 |
| chr1_2 | five_prime_UTR | 6078880 | 6079046 | 6078880 | ID=Msa0051920-mRNA-1:five_prime_utr;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6078643 | 6078879 | 6078643 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6078351 | 6078567 | 6078351 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6078144 | 6078236 | 6078144 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6077323 | 6078036 | 6077323 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6076465 | 6076828 | 6076465 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6075891 | 6075972 | 6075891 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | CDS | 6075174 | 6075380 | 6075174 | ID=Msa0051920-mRNA-1:cds;Parent=Msa0051920-mRNA-1 |
| chr1_2 | three_prime_UTR | 6075137 | 6075173 | 6075137 | ID=Msa0051920-mRNA-1:three_prime_utr;Parent=Msa0051920-mRNA-1 |
| chr1_2 | three_prime_UTR | 6074342 | 6074728 | 6074342 | ID=Msa0051920-mRNA-1:three_prime_utr;Parent=Msa0051920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
