AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081080 MtrunA17_Chr1g0193421 97.706 218 5 0 1 218 2 219 6.47e-154 425
Msa0081080 MtrunA17_Chr7g0271211 79.592 196 40 0 22 217 19 214 4.44e-114 324
Msa0081080 MtrunA17_Chr1g0193671 67.299 211 69 0 8 218 8 218 2.66e-100 290
Msa0081080 MtrunA17_Chr5g0414971 46.667 195 103 1 22 215 26 220 5.61e-57 180
Msa0081080 MtrunA17_Chr4g0007041 44.954 218 112 4 1 213 1 215 8.67e-57 179
Msa0081080 MtrunA17_Chr4g0007051 44.954 218 112 4 1 213 1 215 2.87e-56 178
Msa0081080 MtrunA17_Chr4g0007031 44.954 218 112 4 1 213 1 215 3.26e-56 178
Msa0081080 MtrunA17_Chr5g0419971 44.954 218 112 4 1 213 1 215 3.26e-56 178
Msa0081080 MtrunA17_Chr5g0419981 44.954 218 112 4 1 213 1 215 3.26e-56 178
Msa0081080 MtrunA17_Chr1g0189841 46.154 208 106 3 12 214 11 217 5.37e-56 177
Msa0081080 MtrunA17_Chr2g0285871 44.954 218 112 4 1 213 1 215 6.33e-56 177
Msa0081080 MtrunA17_Chr6g0449761 45.755 212 109 3 7 214 6 215 8.87e-56 177
Msa0081080 MtrunA17_Chr6g0449731 45.755 212 109 3 7 214 6 215 8.89e-56 177
Msa0081080 MtrunA17_Chr6g0449751 45.755 212 109 3 7 214 6 215 2.01e-55 176
Msa0081080 MtrunA17_Chr6g0449771 45.283 212 110 3 7 214 6 215 6.71e-55 174
Msa0081080 MtrunA17_Chr1g0156131 43.415 205 108 2 12 214 11 209 1.28e-53 171
Msa0081080 MtrunA17_Chr1g0210761 41.827 208 114 3 9 216 9 209 1.20e-52 168
Msa0081080 MtrunA17_Chr6g0449791 44.776 201 104 3 7 202 6 204 2.69e-50 162
Msa0081080 MtrunA17_Chr2g0292831 42.424 198 107 3 20 214 19 212 4.34e-49 159
Msa0081080 MtrunA17_Chr2g0292901 42.408 191 103 3 27 214 27 213 1.78e-47 155
Msa0081080 MtrunA17_Chr6g0449781 41.038 212 118 4 7 214 6 214 8.85e-47 154
Msa0081080 MtrunA17_Chr1g0178711 37.273 220 127 5 7 218 9 225 1.27e-44 148
Msa0081080 MtrunA17_Chr8g0343911 39.409 203 117 2 12 214 8 204 3.17e-41 139
Msa0081080 MtrunA17_Chr2g0292861 41.860 172 97 2 46 214 7 178 5.42e-41 137
Msa0081080 MtrunA17_Chr2g0292841 41.279 172 98 2 46 214 7 178 1.05e-39 134
Msa0081080 MtrunA17_Chr2g0300561 39.785 186 110 1 29 214 23 206 9.76e-39 133
Msa0081080 MtrunA17_Chr8g0343934 35.023 217 132 4 1 217 1 208 2.00e-38 132
Msa0081080 MtrunA17_Chr2g0313961 36.449 214 127 4 1 214 1 205 4.34e-38 131
Msa0081080 MtrunA17_Chr2g0300581 38.503 187 113 1 29 215 23 207 9.68e-38 130
Msa0081080 MtrunA17_Chr2g0301611 36.279 215 128 4 1 215 1 206 1.65e-37 129
Msa0081080 MtrunA17_Chr2g0300591 37.566 189 116 1 29 217 23 209 3.72e-37 129
Msa0081080 MtrunA17_Chr2g0297231 35.814 215 129 4 1 215 1 206 1.29e-36 127
Msa0081080 MtrunA17_Chr8g0343961 35.484 217 131 5 1 217 1 208 1.61e-36 127
Msa0081080 MtrunA17_Chr3g0130241 38.182 220 113 6 1 214 63 265 1.62e-36 129
Msa0081080 MtrunA17_Chr8g0343954 35.602 191 119 3 27 217 22 208 2.70e-36 126
Msa0081080 MtrunA17_Chr2g0302171 36.744 215 127 4 1 215 1 206 2.85e-36 126
Msa0081080 MtrunA17_Chr3g0084531 35.349 215 130 4 1 215 1 206 2.37e-35 124
Msa0081080 MtrunA17_Chr3g0084511 34.419 215 131 4 1 215 1 205 2.80e-35 124
Msa0081080 MtrunA17_Chr2g0292911 51.304 115 54 1 46 158 7 121 6.01e-35 121
Msa0081080 MtrunA17_Chr4g0003361 40.722 194 110 4 21 214 13 201 7.41e-35 122
Msa0081080 MtrunA17_Chr2g0297241 35.349 215 130 4 1 215 1 206 8.42e-35 122
Msa0081080 MtrunA17_Chr3g0084521 35.814 215 128 5 1 215 1 205 1.63e-34 122
Msa0081080 MtrunA17_Chr8g0335851 42.012 169 95 2 22 188 25 192 3.65e-34 121
Msa0081080 MtrunA17_Chr2g0321601 37.624 202 102 6 15 211 18 200 2.02e-33 119
Msa0081080 MtrunA17_Chr5g0411961 31.163 215 139 4 1 215 1 206 8.95e-33 117
Msa0081080 MtrunA17_Chr2g0321581 36.000 200 108 5 15 211 19 201 1.77e-32 116
Msa0081080 MtrunA17_Chr2g0321591 36.000 200 108 5 15 211 19 201 2.10e-32 116
Msa0081080 MtrunA17_Chr2g0302541 35.979 189 117 3 27 215 22 206 2.18e-32 116
Msa0081080 MtrunA17_Chr4g0026191 35.849 212 120 7 1 211 6 202 1.39e-31 114
Msa0081080 MtrunA17_Chr8g0343921 34.171 199 127 2 14 212 7 201 1.53e-31 114
Msa0081080 MtrunA17_Chr4g0012651 35.263 190 119 3 26 215 21 206 2.84e-31 114
Msa0081080 MtrunA17_Chr7g0217811 34.737 190 120 3 26 215 21 206 3.13e-31 113
Msa0081080 MtrunA17_Chr8g0344021 36.082 194 120 3 19 211 15 205 3.14e-30 111
Msa0081080 MtrunA17_Chr4g0026201 41.791 134 75 2 79 211 71 202 3.87e-30 110
Msa0081080 MtrunA17_Chr8g0344051 36.816 201 120 4 12 211 11 205 5.31e-29 107
Msa0081080 MtrunA17_Chr8g0344041 34.653 202 127 4 14 214 12 209 2.99e-28 105
Msa0081080 MtrunA17_Chr2g0286171 31.019 216 139 7 1 214 1 208 3.16e-27 103
Msa0081080 MtrunA17_Chr3g0115141 31.163 215 138 6 1 214 1 206 4.89e-25 97.4
Msa0081080 MtrunA17_Chr8g0344031 37.791 172 103 4 16 186 13 181 7.48e-24 94.4
Msa0081080 MtrunA17_Chr3g0084551 31.019 216 132 6 1 215 1 200 5.35e-21 87.4
Msa0081080 MtrunA17_Chr3g0084501 41.441 111 59 2 1 111 1 105 1.42e-17 75.5
Msa0081080 MtrunA17_Chr2g0292881 54.386 57 24 1 94 148 1 57 8.01e-15 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081080 AT3G62020.1 70.283 212 62 1 8 218 8 219 4.69e-107 307
Msa0081080 AT1G09560.1 71.000 200 58 0 19 218 20 219 6.91e-105 301
Msa0081080 AT1G02335.1 64.679 218 77 0 1 218 2 219 1.77e-101 293
Msa0081080 AT3G62020.2 73.077 182 48 1 38 218 9 190 1.18e-96 280
Msa0081080 AT5G26700.1 62.371 194 70 1 25 218 23 213 1.15e-88 260
Msa0081080 AT3G05930.1 56.459 209 90 1 11 218 11 219 1.61e-83 248
Msa0081080 AT1G18980.1 49.519 208 103 1 8 215 14 219 1.24e-65 202
Msa0081080 AT1G18970.1 49.519 208 103 1 8 215 14 219 6.94e-65 200
Msa0081080 AT3G05950.1 50.000 210 99 3 12 215 13 222 9.90e-61 190
Msa0081080 AT4G14630.1 49.065 214 100 3 6 214 13 222 3.99e-60 188
Msa0081080 AT5G39110.1 44.545 220 116 3 1 214 1 220 2.40e-59 186
Msa0081080 AT5G39150.1 44.749 219 116 2 1 214 1 219 2.96e-59 186
Msa0081080 AT5G39180.1 44.292 219 117 2 1 214 1 219 1.39e-58 184
Msa0081080 AT5G39120.1 44.292 219 117 2 1 214 1 219 1.45e-58 184
Msa0081080 AT5G39160.1 42.727 220 121 3 1 215 1 220 2.16e-58 184
Msa0081080 AT5G39130.1 42.727 220 121 3 1 215 1 220 3.34e-58 183
Msa0081080 AT5G39190.1 42.727 220 121 3 1 215 1 220 4.24e-58 183
Msa0081080 AT3G04200.1 47.393 211 105 3 12 216 14 224 1.75e-56 179
Msa0081080 AT5G39160.3 41.176 221 119 4 1 215 1 216 6.43e-55 175
Msa0081080 AT5G38910.1 45.714 210 110 2 9 214 10 219 2.88e-53 171
Msa0081080 AT5G38940.1 46.193 197 102 2 22 214 25 221 1.16e-52 169
Msa0081080 AT5G38930.1 46.000 200 104 2 19 214 22 221 2.02e-52 169
Msa0081080 AT5G38940.2 46.193 197 102 2 22 214 49 245 2.25e-52 169
Msa0081080 AT5G38960.1 44.878 205 108 3 16 215 19 223 4.52e-52 167
Msa0081080 AT3G04170.1 41.964 224 120 5 1 217 1 221 7.77e-50 162
Msa0081080 AT5G39190.2 38.462 221 107 4 1 215 1 198 1.80e-48 157
Msa0081080 AT3G04180.1 41.117 197 112 2 20 212 23 219 3.74e-48 157
Msa0081080 AT5G39160.2 38.462 221 107 4 1 215 1 198 3.84e-48 157
Msa0081080 AT3G04150.1 39.806 206 118 3 12 211 13 218 1.21e-47 156
Msa0081080 AT3G04190.1 41.117 197 112 2 20 212 23 219 2.23e-47 155
Msa0081080 AT3G04150.2 37.443 219 118 3 12 211 13 231 1.19e-46 154
Msa0081080 AT1G10460.1 38.889 198 116 3 22 214 18 215 1.70e-42 143
Msa0081080 AT3G10080.1 37.745 204 117 5 19 216 22 221 5.16e-42 142
Msa0081080 AT3G10080.2 37.745 204 117 5 19 216 93 292 2.07e-41 142
Msa0081080 AT5G20630.1 38.140 215 126 3 1 215 1 208 1.46e-40 138
Msa0081080 AT1G74820.1 38.298 188 114 1 27 214 40 225 2.13e-40 138
Msa0081080 AT1G72610.1 39.683 189 112 1 27 215 19 205 4.36e-40 136
Msa0081080 AT5G61750.1 41.212 165 95 1 19 181 15 179 7.00e-36 125
Msa0081080 AT5G38910.2 37.500 208 93 2 9 214 10 182 1.90e-34 121

Find 87 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACATTCCTTGTTTCT+TGG 0.225958 1_2:+59606160 Msa0081080:CDS
AGTAAATAAGTTGATAAATA+TGG 0.244348 1_2:-59606052 None:intergenic
GTACATTGGCATTGTTCTTT+TGG 0.249139 1_2:-59607416 None:intergenic
CAAGGAATGTTCAAGCTTCA+TGG 0.289348 1_2:-59606152 None:intergenic
AATGTGTTGTTGGTGCTTCC+TGG 0.292080 1_2:-59607144 None:intergenic
TGGAAGTGAACCAAGGCTTT+TGG 0.306152 1_2:-59607396 None:intergenic
TGAGGTGGGTTGAGGCCACC+TGG 0.332492 1_2:-59607252 None:intergenic
TTCCTTGTTTCTTGGGACTT+TGG 0.347949 1_2:+59606168 Msa0081080:CDS
GTTGTTGGTGCTTCCTGGTT+TGG 0.357417 1_2:-59607139 None:intergenic
TTGAACATTCCTTGTTTCTT+GGG 0.360740 1_2:+59606161 Msa0081080:CDS
AATGTTCAAGCTTCATGGTT+TGG 0.366838 1_2:-59606147 None:intergenic
ATGTTCAAGCTTCATGGTTT+GGG 0.366944 1_2:-59606146 None:intergenic
GCATTCAACAGCCAACTTCC+TGG 0.396208 1_2:+59607456 Msa0081080:CDS
CTCTTCCATACCATTTCTGT+TGG 0.408455 1_2:+59606075 Msa0081080:five_prime_UTR
GTCTTGGTCAACACATTGTC+TGG 0.423933 1_2:-59607525 None:intergenic
TCCTGGTTTGGCTAGTATGT+TGG 0.425869 1_2:-59607127 None:intergenic
TGGTTTGGCTAGTATGTTGG+AGG 0.436671 1_2:-59607124 None:intergenic
AAGAAACAAATGAGTTGGTT+GGG 0.437841 1_2:-59606014 None:intergenic
CAGAGGTCTTGAAGATAGTC+AGG 0.446367 1_2:-59606223 None:intergenic
GGAAGCACCAACAACACATT+TGG 0.455191 1_2:+59607147 Msa0081080:CDS
GAGGTGGGTTGAGGCCACCT+GGG 0.458114 1_2:-59607251 None:intergenic
AAACTGAAAATAAGTAAGCT+AGG 0.468890 1_2:-59606104 None:intergenic
GCGCGTGGGTGAGTGTGAGG+TGG 0.468916 1_2:-59607267 None:intergenic
GTAGCAATGGACTGTGTACC+AGG 0.469832 1_2:-59607474 None:intergenic
CACTGAGCCAAATGTGTTGT+TGG 0.470338 1_2:-59607154 None:intergenic
AAAGAAACAAATGAGTTGGT+TGG 0.471193 1_2:-59606015 None:intergenic
TGTGTTGCTGACCTTGCCTC+AGG 0.480555 1_2:+59606244 Msa0081080:CDS
TTGAAGGGCAACTAGATGTT+GGG 0.481045 1_2:+59607310 Msa0081080:CDS
GGTACCCACCTGGAATGTCT+TGG 0.486086 1_2:-59607541 None:intergenic
ACATTTGGCTCAGTGGTGAC+TGG 0.488632 1_2:+59607162 Msa0081080:CDS
TGTGTTGACCAAGACATTCC+AGG 0.491853 1_2:+59607533 Msa0081080:CDS
GAGGTCGTGTTTGTGCTTGA+AGG 0.496245 1_2:+59607294 Msa0081080:CDS
GCCAACGTTCAGAAAGTTCC+AGG 0.497137 1_2:+59607186 Msa0081080:CDS
ATTTGTGTTCCCAAAAGCCT+TGG 0.499070 1_2:+59607386 Msa0081080:CDS
GTCAGGATCTGATGAGAAAG+AGG 0.500868 1_2:-59606206 None:intergenic
GGTGAGTGTGAGGTGGGTTG+AGG 0.500963 1_2:-59607260 None:intergenic
TAGGGTTGGACCAACAGAAA+TGG 0.502399 1_2:-59606085 None:intergenic
AACACGACCTCGGTGGCGCG+TGG 0.502632 1_2:-59607282 None:intergenic
CGATATGAGCACATTGGCTG+TGG 0.503399 1_2:-59607340 None:intergenic
CAACCTCTTTGGTACCCACC+TGG 0.508354 1_2:-59607551 None:intergenic
CGCGTGGGTGAGTGTGAGGT+GGG 0.508401 1_2:-59607266 None:intergenic
GAAAATAAGTAAGCTAGGGT+TGG 0.509742 1_2:-59606099 None:intergenic
TCAAGGATTGACTATGCCCC+AGG 0.510714 1_2:+59607234 Msa0081080:CDS
GAAATCAGAGGCATTTACCT+TGG 0.510737 1_2:-59607100 None:intergenic
GAAGAAAGAAACAAATGAGT+TGG 0.528794 1_2:-59606019 None:intergenic
AGGTCGTGTTTGTGCTTGAA+GGG 0.529030 1_2:+59607295 Msa0081080:CDS
TTGGACCAACAGAAATGGTA+TGG 0.534444 1_2:-59606080 None:intergenic
TCCTGGAACTTTCTGAACGT+TGG 0.535174 1_2:-59607187 None:intergenic
AGGTGGGTTGAGGCCACCTG+GGG 0.540934 1_2:-59607250 None:intergenic
ACACCAAGAGTGTTGAGTCC+TGG 0.541220 1_2:-59607204 None:intergenic
GTTCCAGGACTCAACACTCT+TGG 0.543606 1_2:+59607201 Msa0081080:CDS
CACTTGCAAAGAGGCATCCA+AGG 0.544665 1_2:+59607083 Msa0081080:CDS
AGAAGGTGTGGCTGCAAACA+AGG 0.550133 1_2:-59607499 None:intergenic
CTTGAAGGGCAACTAGATGT+TGG 0.567104 1_2:+59607309 Msa0081080:CDS
CTCTTGGTGTGTCTCTGTCA+AGG 0.569695 1_2:+59607217 Msa0081080:CDS
AAGAACAGCAGCAGGTACAT+TGG 0.570295 1_2:-59607430 None:intergenic
AACTGAAAATAAGTAAGCTA+GGG 0.576272 1_2:-59606103 None:intergenic
AATGCAGAAAGAACAGCAGC+AGG 0.579009 1_2:-59607438 None:intergenic
TCCAACATACTAGCCAAACC+AGG 0.587723 1_2:+59607126 Msa0081080:CDS
AGGTTGAGAAAATCAAGTCT+AGG 0.589416 1_2:+59607568 Msa0081080:CDS
ACACGACCTCGGTGGCGCGT+GGG 0.591683 1_2:-59607281 None:intergenic
TGCAAACAAGGTAGTAGCAA+TGG 0.593622 1_2:-59607487 None:intergenic
CAACAACACATTTGGCTCAG+TGG 0.597237 1_2:+59607155 Msa0081080:CDS
AAAACAGGTGTAAAAGTGAA+CGG 0.600498 1_2:+59607057 Msa0081080:intron
GTGGCGCGTGGGTGAGTGTG+AGG 0.601342 1_2:-59607270 None:intergenic
AGGCAAGAGAATTGTCATGA+TGG 0.601614 1_2:-59607768 None:intergenic
CATATCGAAGACAATTAGCA+AGG 0.601659 1_2:+59607356 Msa0081080:CDS
AGCCAAAGTCCCAAGAAACA+AGG 0.604324 1_2:-59606170 None:intergenic
AACACATTGTCTGGAACAGA+AGG 0.604334 1_2:-59607516 None:intergenic
TGGACTGTGTACCAGGAAGT+TGG 0.611304 1_2:-59607467 None:intergenic
TGTCTTCGATATGAGCACAT+TGG 0.624219 1_2:-59607346 None:intergenic
ATTCCAGGTGGGTACCAAAG+AGG 0.627495 1_2:+59607548 Msa0081080:CDS
TTCAAGCACAAACACGACCT+CGG 0.628811 1_2:-59607292 None:intergenic
ATAAGTTGATAAATATGGAG+AGG 0.633439 1_2:-59606047 None:intergenic
AAGGGTAGGTACCTGAGGCA+AGG 0.640278 1_2:-59606255 None:intergenic
CACTCACCCACGCGCCACCG+AGG 0.654415 1_2:+59607275 Msa0081080:CDS
TATGTTGGAGGAGAAATCAG+AGG 0.658115 1_2:-59607112 None:intergenic
GAACGGATTCACTTGCAAAG+AGG 0.660744 1_2:+59607074 Msa0081080:CDS
ATATCGAAGACAATTAGCAA+GGG 0.660966 1_2:+59607357 Msa0081080:CDS
GTAAAATTATCATGGTGGTG+TGG 0.668940 1_2:+59607605 Msa0081080:exon
AGGATCTGATGAGAAAGAGG+TGG 0.687344 1_2:-59606203 None:intergenic
AGGATTGACTATGCCCCAGG+TGG 0.697092 1_2:+59607237 Msa0081080:CDS
AAGCACAAACACGACCTCGG+TGG 0.701480 1_2:-59607289 None:intergenic
ATTGTCTGGAACAGAAGGTG+TGG 0.719167 1_2:-59607511 None:intergenic
TTGACCAAGACATTCCAGGT+GGG 0.732755 1_2:+59607537 Msa0081080:CDS
GTTGACCAAGACATTCCAGG+TGG 0.742504 1_2:+59607536 Msa0081080:CDS
AGGCAAGGTCAGCAACACAG+AGG 0.751663 1_2:-59606240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAATTTAAAAAATA+GGG - chr1_2:59606416-59606435 None:intergenic 0.0%
!! AAAAATATAATTTAAAAAAT+AGG - chr1_2:59606417-59606436 None:intergenic 0.0%
!! AAAATATAATTTAAAAAATA+GGG - chr1_2:59606416-59606435 None:intergenic 0.0%
!! AAAAATATAATTTAAAAAAT+AGG - chr1_2:59606417-59606436 None:intergenic 0.0%
!! AATATAATTTAAAAAATAGG+GGG - chr1_2:59606414-59606433 None:intergenic 10.0%
!! AACAAAAAAAATTAAAGAAA+AGG - chr1_2:59606467-59606486 None:intergenic 10.0%
!! AATATAATTTAAAAAATAGG+GGG - chr1_2:59606414-59606433 None:intergenic 10.0%
!! AACAAAAAAAATTAAAGAAA+AGG - chr1_2:59606467-59606486 None:intergenic 10.0%
!!! AGTAAATAAGTTGATAAATA+TGG - chr1_2:59606055-59606074 None:intergenic 15.0%
!!! AGTAAATAAGTTGATAAATA+TGG - chr1_2:59606055-59606074 None:intergenic 15.0%
!! ATAGTTATAGTCTATATGAA+TGG - chr1_2:59606303-59606322 None:intergenic 20.0%
!! TTCATATAGACTATAACTAT+AGG + chr1_2:59606303-59606322 Msa0081080:intron 20.0%
!! ATAATCTTACATTAGAGATT+TGG + chr1_2:59606662-59606681 Msa0081080:intron 20.0%
!!! TTTTCTGAAAGATTAATTCT+TGG + chr1_2:59607019-59607038 Msa0081080:intron 20.0%
!!! CCATGATAATTTTACTTTTT+GGG - chr1_2:59607600-59607619 None:intergenic 20.0%
!!! ACCATGATAATTTTACTTTT+TGG - chr1_2:59607601-59607620 None:intergenic 20.0%
!! AAAAAGTAAAATTATCATGG+TGG + chr1_2:59607600-59607619 Msa0081080:exon 20.0%
!!! AATCATTTTATCATGTGTTT+CGG - chr1_2:59607897-59607916 None:intergenic 20.0%
!! ATAGTTATAGTCTATATGAA+TGG - chr1_2:59606303-59606322 None:intergenic 20.0%
!! TTCATATAGACTATAACTAT+AGG + chr1_2:59606303-59606322 Msa0081080:intron 20.0%
!! ATAATCTTACATTAGAGATT+TGG + chr1_2:59606662-59606681 Msa0081080:intron 20.0%
!!! TTTTCTGAAAGATTAATTCT+TGG + chr1_2:59607019-59607038 Msa0081080:intron 20.0%
!!! CCATGATAATTTTACTTTTT+GGG - chr1_2:59607600-59607619 None:intergenic 20.0%
!!! ACCATGATAATTTTACTTTT+TGG - chr1_2:59607601-59607620 None:intergenic 20.0%
!! AAAAAGTAAAATTATCATGG+TGG + chr1_2:59607600-59607619 Msa0081080:exon 20.0%
!!! AATCATTTTATCATGTGTTT+CGG - chr1_2:59607897-59607916 None:intergenic 20.0%
!!! ATAAGTTGATAAATATGGAG+AGG - chr1_2:59606050-59606069 None:intergenic 25.0%
! AACTGAAAATAAGTAAGCTA+GGG - chr1_2:59606106-59606125 None:intergenic 25.0%
! AAACTGAAAATAAGTAAGCT+AGG - chr1_2:59606107-59606126 None:intergenic 25.0%
! ATAACTATAGGTGTAACTAT+AGG + chr1_2:59606315-59606334 Msa0081080:intron 25.0%
! ATAATTTAAAAAATAGGGGG+CGG - chr1_2:59606411-59606430 None:intergenic 25.0%
! GAGGTTAAGAAAACTAATAA+AGG - chr1_2:59606495-59606514 None:intergenic 25.0%
! AAAGCAAAATTAAAGCAGTT+TGG - chr1_2:59606525-59606544 None:intergenic 25.0%
! CTTAATCATGTTATGTTAGT+GGG - chr1_2:59606592-59606611 None:intergenic 25.0%
! ACTTAATCATGTTATGTTAG+TGG - chr1_2:59606593-59606612 None:intergenic 25.0%
!!! GTTAGTTATCCAATTTTGAT+TGG - chr1_2:59606742-59606761 None:intergenic 25.0%
! AATCCTCATCAAGAATTTAA+TGG + chr1_2:59606874-59606893 Msa0081080:intron 25.0%
! CCCAAAAAGTAAAATTATCA+TGG + chr1_2:59607597-59607616 Msa0081080:exon 25.0%
!!! AAAAGTAGCATTTTTCTAGT+TGG - chr1_2:59607847-59607866 None:intergenic 25.0%
!! ATATCGTGATTATAGTTTTC+AGG - chr1_2:59607870-59607889 None:intergenic 25.0%
!! ATCATTTTATCATGTGTTTC+GGG - chr1_2:59607896-59607915 None:intergenic 25.0%
!!! ATAAGTTGATAAATATGGAG+AGG - chr1_2:59606050-59606069 None:intergenic 25.0%
! AACTGAAAATAAGTAAGCTA+GGG - chr1_2:59606106-59606125 None:intergenic 25.0%
! AAACTGAAAATAAGTAAGCT+AGG - chr1_2:59606107-59606126 None:intergenic 25.0%
! ATAACTATAGGTGTAACTAT+AGG + chr1_2:59606315-59606334 Msa0081080:intron 25.0%
! ATAATTTAAAAAATAGGGGG+CGG - chr1_2:59606411-59606430 None:intergenic 25.0%
! GAGGTTAAGAAAACTAATAA+AGG - chr1_2:59606495-59606514 None:intergenic 25.0%
! AAAGCAAAATTAAAGCAGTT+TGG - chr1_2:59606525-59606544 None:intergenic 25.0%
! CTTAATCATGTTATGTTAGT+GGG - chr1_2:59606592-59606611 None:intergenic 25.0%
! ACTTAATCATGTTATGTTAG+TGG - chr1_2:59606593-59606612 None:intergenic 25.0%
!!! GTTAGTTATCCAATTTTGAT+TGG - chr1_2:59606742-59606761 None:intergenic 25.0%
! AATCCTCATCAAGAATTTAA+TGG + chr1_2:59606874-59606893 Msa0081080:intron 25.0%
! CCCAAAAAGTAAAATTATCA+TGG + chr1_2:59607597-59607616 Msa0081080:exon 25.0%
!!! AAAAGTAGCATTTTTCTAGT+TGG - chr1_2:59607847-59607866 None:intergenic 25.0%
!! ATATCGTGATTATAGTTTTC+AGG - chr1_2:59607870-59607889 None:intergenic 25.0%
!! ATCATTTTATCATGTGTTTC+GGG - chr1_2:59607896-59607915 None:intergenic 25.0%
!! AAGAAACAAATGAGTTGGTT+GGG - chr1_2:59606017-59606036 None:intergenic 30.0%
!! AAAGAAACAAATGAGTTGGT+TGG - chr1_2:59606018-59606037 None:intergenic 30.0%
GAAGAAAGAAACAAATGAGT+TGG - chr1_2:59606022-59606041 None:intergenic 30.0%
! TTGAACATTCCTTGTTTCTT+GGG + chr1_2:59606161-59606180 Msa0081080:CDS 30.0%
GAGAGTAGAGTGATATAAAA+GGG - chr1_2:59606276-59606295 None:intergenic 30.0%
AGAGAGTAGAGTGATATAAA+AGG - chr1_2:59606277-59606296 None:intergenic 30.0%
TAATTTAAAAAATAGGGGGC+GGG - chr1_2:59606410-59606429 None:intergenic 30.0%
CAAAATTAAAGCAGTTTGGT+AGG - chr1_2:59606521-59606540 None:intergenic 30.0%
! GATTTGGATTTTCAGCAATT+TGG + chr1_2:59606678-59606697 Msa0081080:intron 30.0%
!!! TCCAATTTTGATTGGAAGTT+CGG - chr1_2:59606734-59606753 None:intergenic 30.0%
!!! TGTCCAATTTTGATTAGACT+TGG + chr1_2:59606808-59606827 Msa0081080:intron 30.0%
AGACCATTAAATTCTTGATG+AGG - chr1_2:59606880-59606899 None:intergenic 30.0%
AACTCTTAAATCTACAAAGC+TGG - chr1_2:59606985-59607004 None:intergenic 30.0%
TCTGAAAGATTAATTCTTGG+AGG + chr1_2:59607022-59607041 Msa0081080:intron 30.0%
CTGAAAGATTAATTCTTGGA+GGG + chr1_2:59607023-59607042 Msa0081080:intron 30.0%
AAAACAGGTGTAAAAGTGAA+CGG + chr1_2:59607057-59607076 Msa0081080:intron 30.0%
ATATCGAAGACAATTAGCAA+GGG + chr1_2:59607357-59607376 Msa0081080:CDS 30.0%
ATCTGTCTCTTTGCAAAAAA+TGG + chr1_2:59607657-59607676 Msa0081080:three_prime_UTR 30.0%
!!! CTTATATTTTTTGACTGCGA+CGG + chr1_2:59607789-59607808 Msa0081080:three_prime_UTR 30.0%
!! AAGAAACAAATGAGTTGGTT+GGG - chr1_2:59606017-59606036 None:intergenic 30.0%
!! AAAGAAACAAATGAGTTGGT+TGG - chr1_2:59606018-59606037 None:intergenic 30.0%
GAAGAAAGAAACAAATGAGT+TGG - chr1_2:59606022-59606041 None:intergenic 30.0%
! TTGAACATTCCTTGTTTCTT+GGG + chr1_2:59606161-59606180 Msa0081080:CDS 30.0%
GAGAGTAGAGTGATATAAAA+GGG - chr1_2:59606276-59606295 None:intergenic 30.0%
AGAGAGTAGAGTGATATAAA+AGG - chr1_2:59606277-59606296 None:intergenic 30.0%
TAATTTAAAAAATAGGGGGC+GGG - chr1_2:59606410-59606429 None:intergenic 30.0%
CAAAATTAAAGCAGTTTGGT+AGG - chr1_2:59606521-59606540 None:intergenic 30.0%
! GATTTGGATTTTCAGCAATT+TGG + chr1_2:59606678-59606697 Msa0081080:intron 30.0%
!!! TCCAATTTTGATTGGAAGTT+CGG - chr1_2:59606734-59606753 None:intergenic 30.0%
!!! TGTCCAATTTTGATTAGACT+TGG + chr1_2:59606808-59606827 Msa0081080:intron 30.0%
AGACCATTAAATTCTTGATG+AGG - chr1_2:59606880-59606899 None:intergenic 30.0%
AACTCTTAAATCTACAAAGC+TGG - chr1_2:59606985-59607004 None:intergenic 30.0%
TCTGAAAGATTAATTCTTGG+AGG + chr1_2:59607022-59607041 Msa0081080:intron 30.0%
CTGAAAGATTAATTCTTGGA+GGG + chr1_2:59607023-59607042 Msa0081080:intron 30.0%
AAAACAGGTGTAAAAGTGAA+CGG + chr1_2:59607057-59607076 Msa0081080:intron 30.0%
ATATCGAAGACAATTAGCAA+GGG + chr1_2:59607357-59607376 Msa0081080:CDS 30.0%
ATCTGTCTCTTTGCAAAAAA+TGG + chr1_2:59607657-59607676 Msa0081080:three_prime_UTR 30.0%
!!! CTTATATTTTTTGACTGCGA+CGG + chr1_2:59607789-59607808 Msa0081080:three_prime_UTR 30.0%
GAAAATAAGTAAGCTAGGGT+TGG - chr1_2:59606102-59606121 None:intergenic 35.0%
ATGTTCAAGCTTCATGGTTT+GGG - chr1_2:59606149-59606168 None:intergenic 35.0%
AATGTTCAAGCTTCATGGTT+TGG - chr1_2:59606150-59606169 None:intergenic 35.0%
! CTTGAACATTCCTTGTTTCT+TGG + chr1_2:59606160-59606179 Msa0081080:CDS 35.0%
GTAGAGTGATATAAAAGGGT+AGG - chr1_2:59606272-59606291 None:intergenic 35.0%
! TTTTCCAGCTTATATGCATG+AGG - chr1_2:59606371-59606390 None:intergenic 35.0%
CATGATTAAACAGTTGAGTC+AGG - chr1_2:59606550-59606569 None:intergenic 35.0%
ATTATCCATCATTCAGCTAG+TGG - chr1_2:59606647-59606666 None:intergenic 35.0%
CACCATCAAAGTTAAATGCA+CGG + chr1_2:59606772-59606791 Msa0081080:intron 35.0%
! AACCGTGCATTTAACTTTGA+TGG - chr1_2:59606777-59606796 None:intergenic 35.0%
TCGCCAAGTCTAATCAAAAT+TGG - chr1_2:59606814-59606833 None:intergenic 35.0%
AGGGCTGGAATATATAAAAC+AGG + chr1_2:59607042-59607061 Msa0081080:intron 35.0%
CATATCGAAGACAATTAGCA+AGG + chr1_2:59607356-59607375 Msa0081080:CDS 35.0%
! GTACATTGGCATTGTTCTTT+TGG - chr1_2:59607419-59607438 None:intergenic 35.0%
! CTTGATTTTCTCAACCTCTT+TGG - chr1_2:59607565-59607584 None:intergenic 35.0%
AGGTTGAGAAAATCAAGTCT+AGG + chr1_2:59607568-59607587 Msa0081080:CDS 35.0%
! GTAAAATTATCATGGTGGTG+TGG + chr1_2:59607605-59607624 Msa0081080:exon 35.0%
GCAAAAAATGGAACACTCAA+AGG + chr1_2:59607669-59607688 Msa0081080:three_prime_UTR 35.0%
AAGGAAAAAGTAAGAGCAAG+TGG + chr1_2:59607688-59607707 Msa0081080:three_prime_UTR 35.0%
CGTCGCAGTCAAAAAATATA+AGG - chr1_2:59607791-59607810 None:intergenic 35.0%
GAAAATAAGTAAGCTAGGGT+TGG - chr1_2:59606102-59606121 None:intergenic 35.0%
ATGTTCAAGCTTCATGGTTT+GGG - chr1_2:59606149-59606168 None:intergenic 35.0%
AATGTTCAAGCTTCATGGTT+TGG - chr1_2:59606150-59606169 None:intergenic 35.0%
! CTTGAACATTCCTTGTTTCT+TGG + chr1_2:59606160-59606179 Msa0081080:CDS 35.0%
GTAGAGTGATATAAAAGGGT+AGG - chr1_2:59606272-59606291 None:intergenic 35.0%
! TTTTCCAGCTTATATGCATG+AGG - chr1_2:59606371-59606390 None:intergenic 35.0%
CATGATTAAACAGTTGAGTC+AGG - chr1_2:59606550-59606569 None:intergenic 35.0%
ATTATCCATCATTCAGCTAG+TGG - chr1_2:59606647-59606666 None:intergenic 35.0%
CACCATCAAAGTTAAATGCA+CGG + chr1_2:59606772-59606791 Msa0081080:intron 35.0%
! AACCGTGCATTTAACTTTGA+TGG - chr1_2:59606777-59606796 None:intergenic 35.0%
TCGCCAAGTCTAATCAAAAT+TGG - chr1_2:59606814-59606833 None:intergenic 35.0%
AGGGCTGGAATATATAAAAC+AGG + chr1_2:59607042-59607061 Msa0081080:intron 35.0%
CATATCGAAGACAATTAGCA+AGG + chr1_2:59607356-59607375 Msa0081080:CDS 35.0%
! GTACATTGGCATTGTTCTTT+TGG - chr1_2:59607419-59607438 None:intergenic 35.0%
! CTTGATTTTCTCAACCTCTT+TGG - chr1_2:59607565-59607584 None:intergenic 35.0%
AGGTTGAGAAAATCAAGTCT+AGG + chr1_2:59607568-59607587 Msa0081080:CDS 35.0%
! GTAAAATTATCATGGTGGTG+TGG + chr1_2:59607605-59607624 Msa0081080:exon 35.0%
GCAAAAAATGGAACACTCAA+AGG + chr1_2:59607669-59607688 Msa0081080:three_prime_UTR 35.0%
AAGGAAAAAGTAAGAGCAAG+TGG + chr1_2:59607688-59607707 Msa0081080:three_prime_UTR 35.0%
CGTCGCAGTCAAAAAATATA+AGG - chr1_2:59607791-59607810 None:intergenic 35.0%
CTCTTCCATACCATTTCTGT+TGG + chr1_2:59606075-59606094 Msa0081080:five_prime_UTR 40.0%
TTGGACCAACAGAAATGGTA+TGG - chr1_2:59606083-59606102 None:intergenic 40.0%
CAAGGAATGTTCAAGCTTCA+TGG - chr1_2:59606155-59606174 None:intergenic 40.0%
! TTCCTTGTTTCTTGGGACTT+TGG + chr1_2:59606168-59606187 Msa0081080:CDS 40.0%
TATAAAAGGGTAGGTACCTG+AGG - chr1_2:59606263-59606282 None:intergenic 40.0%
CTTTCCTCATGCATATAAGC+TGG + chr1_2:59606364-59606383 Msa0081080:intron 40.0%
! CTAGTGGTGCTAAGAAATGT+GGG - chr1_2:59606631-59606650 None:intergenic 40.0%
GCCGAACTTCCAATCAAAAT+TGG + chr1_2:59606730-59606749 Msa0081080:intron 40.0%
AAGATTAATTCTTGGAGGGC+TGG + chr1_2:59607027-59607046 Msa0081080:intron 40.0%
!! GAAATCAGAGGCATTTACCT+TGG - chr1_2:59607103-59607122 None:intergenic 40.0%
TATGTTGGAGGAGAAATCAG+AGG - chr1_2:59607115-59607134 None:intergenic 40.0%
TTGAAGGGCAACTAGATGTT+GGG + chr1_2:59607310-59607329 Msa0081080:CDS 40.0%
TGTCTTCGATATGAGCACAT+TGG - chr1_2:59607349-59607368 None:intergenic 40.0%
ATTTGTGTTCCCAAAAGCCT+TGG + chr1_2:59607386-59607405 Msa0081080:CDS 40.0%
!! GTTCTTTTGGAAGTGAACCA+AGG - chr1_2:59607406-59607425 None:intergenic 40.0%
TGCAAACAAGGTAGTAGCAA+TGG - chr1_2:59607490-59607509 None:intergenic 40.0%
! AACACATTGTCTGGAACAGA+AGG - chr1_2:59607519-59607538 None:intergenic 40.0%
AGGCAAGAGAATTGTCATGA+TGG - chr1_2:59607771-59607790 None:intergenic 40.0%
!!! ATTTTTTGACTGCGACGGAA+TGG + chr1_2:59607794-59607813 Msa0081080:three_prime_UTR 40.0%
CTCTTCCATACCATTTCTGT+TGG + chr1_2:59606075-59606094 Msa0081080:five_prime_UTR 40.0%
TTGGACCAACAGAAATGGTA+TGG - chr1_2:59606083-59606102 None:intergenic 40.0%
CAAGGAATGTTCAAGCTTCA+TGG - chr1_2:59606155-59606174 None:intergenic 40.0%
! TTCCTTGTTTCTTGGGACTT+TGG + chr1_2:59606168-59606187 Msa0081080:CDS 40.0%
TATAAAAGGGTAGGTACCTG+AGG - chr1_2:59606263-59606282 None:intergenic 40.0%
CTTTCCTCATGCATATAAGC+TGG + chr1_2:59606364-59606383 Msa0081080:intron 40.0%
! CTAGTGGTGCTAAGAAATGT+GGG - chr1_2:59606631-59606650 None:intergenic 40.0%
GCCGAACTTCCAATCAAAAT+TGG + chr1_2:59606730-59606749 Msa0081080:intron 40.0%
AAGATTAATTCTTGGAGGGC+TGG + chr1_2:59607027-59607046 Msa0081080:intron 40.0%
!! GAAATCAGAGGCATTTACCT+TGG - chr1_2:59607103-59607122 None:intergenic 40.0%
TATGTTGGAGGAGAAATCAG+AGG - chr1_2:59607115-59607134 None:intergenic 40.0%
TTGAAGGGCAACTAGATGTT+GGG + chr1_2:59607310-59607329 Msa0081080:CDS 40.0%
TGTCTTCGATATGAGCACAT+TGG - chr1_2:59607349-59607368 None:intergenic 40.0%
ATTTGTGTTCCCAAAAGCCT+TGG + chr1_2:59607386-59607405 Msa0081080:CDS 40.0%
!! GTTCTTTTGGAAGTGAACCA+AGG - chr1_2:59607406-59607425 None:intergenic 40.0%
TGCAAACAAGGTAGTAGCAA+TGG - chr1_2:59607490-59607509 None:intergenic 40.0%
! AACACATTGTCTGGAACAGA+AGG - chr1_2:59607519-59607538 None:intergenic 40.0%
AGGCAAGAGAATTGTCATGA+TGG - chr1_2:59607771-59607790 None:intergenic 40.0%
!!! ATTTTTTGACTGCGACGGAA+TGG + chr1_2:59607794-59607813 Msa0081080:three_prime_UTR 40.0%
TAGGGTTGGACCAACAGAAA+TGG - chr1_2:59606088-59606107 None:intergenic 45.0%
AGCCAAAGTCCCAAGAAACA+AGG - chr1_2:59606173-59606192 None:intergenic 45.0%
AGGATCTGATGAGAAAGAGG+TGG - chr1_2:59606206-59606225 None:intergenic 45.0%
GTCAGGATCTGATGAGAAAG+AGG - chr1_2:59606209-59606228 None:intergenic 45.0%
CAGAGGTCTTGAAGATAGTC+AGG - chr1_2:59606226-59606245 None:intergenic 45.0%
AAATAGGGGGCGGGAATAAT+GGG - chr1_2:59606401-59606420 None:intergenic 45.0%
AAAATAGGGGGCGGGAATAA+TGG - chr1_2:59606402-59606421 None:intergenic 45.0%
AAAGCAGTTTGGTAGGAGTG+AGG - chr1_2:59606514-59606533 None:intergenic 45.0%
GGTGCTAAGAAATGTGGGTA+AGG - chr1_2:59606626-59606645 None:intergenic 45.0%
! GCTAGTGGTGCTAAGAAATG+TGG - chr1_2:59606632-59606651 None:intergenic 45.0%
TAGCACCACTAGCTGAATGA+TGG + chr1_2:59606639-59606658 Msa0081080:intron 45.0%
! GAACGGATTCACTTGCAAAG+AGG + chr1_2:59607074-59607093 Msa0081080:CDS 45.0%
! TGGTTTGGCTAGTATGTTGG+AGG - chr1_2:59607127-59607146 None:intergenic 45.0%
TCCAACATACTAGCCAAACC+AGG + chr1_2:59607126-59607145 Msa0081080:CDS 45.0%
!! TCCTGGTTTGGCTAGTATGT+TGG - chr1_2:59607130-59607149 None:intergenic 45.0%
! AATGTGTTGTTGGTGCTTCC+TGG - chr1_2:59607147-59607166 None:intergenic 45.0%
!! GGAAGCACCAACAACACATT+TGG + chr1_2:59607147-59607166 Msa0081080:CDS 45.0%
CACTGAGCCAAATGTGTTGT+TGG - chr1_2:59607157-59607176 None:intergenic 45.0%
! CAACAACACATTTGGCTCAG+TGG + chr1_2:59607155-59607174 Msa0081080:CDS 45.0%
TCCTGGAACTTTCTGAACGT+TGG - chr1_2:59607190-59607209 None:intergenic 45.0%
TTCAAGCACAAACACGACCT+CGG - chr1_2:59607295-59607314 None:intergenic 45.0%
AGGTCGTGTTTGTGCTTGAA+GGG + chr1_2:59607295-59607314 Msa0081080:CDS 45.0%
CTTGAAGGGCAACTAGATGT+TGG + chr1_2:59607309-59607328 Msa0081080:CDS 45.0%
! GGAAGTGAACCAAGGCTTTT+GGG - chr1_2:59607398-59607417 None:intergenic 45.0%
! TGGAAGTGAACCAAGGCTTT+TGG - chr1_2:59607399-59607418 None:intergenic 45.0%
AAGAACAGCAGCAGGTACAT+TGG - chr1_2:59607433-59607452 None:intergenic 45.0%
AATGCAGAAAGAACAGCAGC+AGG - chr1_2:59607441-59607460 None:intergenic 45.0%
! ATTGTCTGGAACAGAAGGTG+TGG - chr1_2:59607514-59607533 None:intergenic 45.0%
GTCTTGGTCAACACATTGTC+TGG - chr1_2:59607528-59607547 None:intergenic 45.0%
! TGTGTTGACCAAGACATTCC+AGG + chr1_2:59607533-59607552 Msa0081080:CDS 45.0%
TTGACCAAGACATTCCAGGT+GGG + chr1_2:59607537-59607556 Msa0081080:CDS 45.0%
TAGGGTTGGACCAACAGAAA+TGG - chr1_2:59606088-59606107 None:intergenic 45.0%
AGCCAAAGTCCCAAGAAACA+AGG - chr1_2:59606173-59606192 None:intergenic 45.0%
AGGATCTGATGAGAAAGAGG+TGG - chr1_2:59606206-59606225 None:intergenic 45.0%
GTCAGGATCTGATGAGAAAG+AGG - chr1_2:59606209-59606228 None:intergenic 45.0%
CAGAGGTCTTGAAGATAGTC+AGG - chr1_2:59606226-59606245 None:intergenic 45.0%
AAATAGGGGGCGGGAATAAT+GGG - chr1_2:59606401-59606420 None:intergenic 45.0%
AAAATAGGGGGCGGGAATAA+TGG - chr1_2:59606402-59606421 None:intergenic 45.0%
AAAGCAGTTTGGTAGGAGTG+AGG - chr1_2:59606514-59606533 None:intergenic 45.0%
GGTGCTAAGAAATGTGGGTA+AGG - chr1_2:59606626-59606645 None:intergenic 45.0%
! GCTAGTGGTGCTAAGAAATG+TGG - chr1_2:59606632-59606651 None:intergenic 45.0%
TAGCACCACTAGCTGAATGA+TGG + chr1_2:59606639-59606658 Msa0081080:intron 45.0%
! GAACGGATTCACTTGCAAAG+AGG + chr1_2:59607074-59607093 Msa0081080:CDS 45.0%
! TGGTTTGGCTAGTATGTTGG+AGG - chr1_2:59607127-59607146 None:intergenic 45.0%
TCCAACATACTAGCCAAACC+AGG + chr1_2:59607126-59607145 Msa0081080:CDS 45.0%
!! TCCTGGTTTGGCTAGTATGT+TGG - chr1_2:59607130-59607149 None:intergenic 45.0%
! AATGTGTTGTTGGTGCTTCC+TGG - chr1_2:59607147-59607166 None:intergenic 45.0%
!! GGAAGCACCAACAACACATT+TGG + chr1_2:59607147-59607166 Msa0081080:CDS 45.0%
CACTGAGCCAAATGTGTTGT+TGG - chr1_2:59607157-59607176 None:intergenic 45.0%
! CAACAACACATTTGGCTCAG+TGG + chr1_2:59607155-59607174 Msa0081080:CDS 45.0%
TCCTGGAACTTTCTGAACGT+TGG - chr1_2:59607190-59607209 None:intergenic 45.0%
TTCAAGCACAAACACGACCT+CGG - chr1_2:59607295-59607314 None:intergenic 45.0%
AGGTCGTGTTTGTGCTTGAA+GGG + chr1_2:59607295-59607314 Msa0081080:CDS 45.0%
CTTGAAGGGCAACTAGATGT+TGG + chr1_2:59607309-59607328 Msa0081080:CDS 45.0%
! GGAAGTGAACCAAGGCTTTT+GGG - chr1_2:59607398-59607417 None:intergenic 45.0%
! TGGAAGTGAACCAAGGCTTT+TGG - chr1_2:59607399-59607418 None:intergenic 45.0%
AAGAACAGCAGCAGGTACAT+TGG - chr1_2:59607433-59607452 None:intergenic 45.0%
AATGCAGAAAGAACAGCAGC+AGG - chr1_2:59607441-59607460 None:intergenic 45.0%
! ATTGTCTGGAACAGAAGGTG+TGG - chr1_2:59607514-59607533 None:intergenic 45.0%
GTCTTGGTCAACACATTGTC+TGG - chr1_2:59607528-59607547 None:intergenic 45.0%
! TGTGTTGACCAAGACATTCC+AGG + chr1_2:59607533-59607552 Msa0081080:CDS 45.0%
TTGACCAAGACATTCCAGGT+GGG + chr1_2:59607537-59607556 Msa0081080:CDS 45.0%
!! AAATATAATTTAAAAAATAG+GGG - chr1_2:59606415-59606434 None:intergenic 5.0%
!! AAATATAATTTAAAAAATAG+GGG - chr1_2:59606415-59606434 None:intergenic 5.0%
AATAGGGGGCGGGAATAATG+GGG - chr1_2:59606400-59606419 None:intergenic 50.0%
CCATATCTCCACTCTCAAGG+TGG - chr1_2:59606918-59606937 None:intergenic 50.0%
CCACCTTGAGAGTGGAGATA+TGG + chr1_2:59606915-59606934 Msa0081080:intron 50.0%
GAGCCATATCTCCACTCTCA+AGG - chr1_2:59606921-59606940 None:intergenic 50.0%
!! CAAAGCTGGCTTGTGAGTTG+AGG - chr1_2:59606971-59606990 None:intergenic 50.0%
!! CACTTGCAAAGAGGCATCCA+AGG + chr1_2:59607083-59607102 Msa0081080:CDS 50.0%
! GTTGTTGGTGCTTCCTGGTT+TGG - chr1_2:59607142-59607161 None:intergenic 50.0%
! ACATTTGGCTCAGTGGTGAC+TGG + chr1_2:59607162-59607181 Msa0081080:CDS 50.0%
GCCAACGTTCAGAAAGTTCC+AGG + chr1_2:59607186-59607205 Msa0081080:CDS 50.0%
GTTCCAGGACTCAACACTCT+TGG + chr1_2:59607201-59607220 Msa0081080:CDS 50.0%
!! ACACCAAGAGTGTTGAGTCC+TGG - chr1_2:59607207-59607226 None:intergenic 50.0%
! CTCTTGGTGTGTCTCTGTCA+AGG + chr1_2:59607217-59607236 Msa0081080:CDS 50.0%
TCAAGGATTGACTATGCCCC+AGG + chr1_2:59607234-59607253 Msa0081080:CDS 50.0%
GAGGTCGTGTTTGTGCTTGA+AGG + chr1_2:59607294-59607313 Msa0081080:CDS 50.0%
! CGATATGAGCACATTGGCTG+TGG - chr1_2:59607343-59607362 None:intergenic 50.0%
GCATTCAACAGCCAACTTCC+TGG + chr1_2:59607456-59607475 Msa0081080:CDS 50.0%
TGGACTGTGTACCAGGAAGT+TGG - chr1_2:59607470-59607489 None:intergenic 50.0%
!! GTAGCAATGGACTGTGTACC+AGG - chr1_2:59607477-59607496 None:intergenic 50.0%
! AGAAGGTGTGGCTGCAAACA+AGG - chr1_2:59607502-59607521 None:intergenic 50.0%
GTTGACCAAGACATTCCAGG+TGG + chr1_2:59607536-59607555 Msa0081080:CDS 50.0%
ATTCCAGGTGGGTACCAAAG+AGG + chr1_2:59607548-59607567 Msa0081080:CDS 50.0%
AATAGGGGGCGGGAATAATG+GGG - chr1_2:59606400-59606419 None:intergenic 50.0%
CCATATCTCCACTCTCAAGG+TGG - chr1_2:59606918-59606937 None:intergenic 50.0%
CCACCTTGAGAGTGGAGATA+TGG + chr1_2:59606915-59606934 Msa0081080:intron 50.0%
GAGCCATATCTCCACTCTCA+AGG - chr1_2:59606921-59606940 None:intergenic 50.0%
!! CAAAGCTGGCTTGTGAGTTG+AGG - chr1_2:59606971-59606990 None:intergenic 50.0%
!! CACTTGCAAAGAGGCATCCA+AGG + chr1_2:59607083-59607102 Msa0081080:CDS 50.0%
! GTTGTTGGTGCTTCCTGGTT+TGG - chr1_2:59607142-59607161 None:intergenic 50.0%
! ACATTTGGCTCAGTGGTGAC+TGG + chr1_2:59607162-59607181 Msa0081080:CDS 50.0%
GCCAACGTTCAGAAAGTTCC+AGG + chr1_2:59607186-59607205 Msa0081080:CDS 50.0%
GTTCCAGGACTCAACACTCT+TGG + chr1_2:59607201-59607220 Msa0081080:CDS 50.0%
!! ACACCAAGAGTGTTGAGTCC+TGG - chr1_2:59607207-59607226 None:intergenic 50.0%
! CTCTTGGTGTGTCTCTGTCA+AGG + chr1_2:59607217-59607236 Msa0081080:CDS 50.0%
TCAAGGATTGACTATGCCCC+AGG + chr1_2:59607234-59607253 Msa0081080:CDS 50.0%
GAGGTCGTGTTTGTGCTTGA+AGG + chr1_2:59607294-59607313 Msa0081080:CDS 50.0%
! CGATATGAGCACATTGGCTG+TGG - chr1_2:59607343-59607362 None:intergenic 50.0%
GCATTCAACAGCCAACTTCC+TGG + chr1_2:59607456-59607475 Msa0081080:CDS 50.0%
TGGACTGTGTACCAGGAAGT+TGG - chr1_2:59607470-59607489 None:intergenic 50.0%
!! GTAGCAATGGACTGTGTACC+AGG - chr1_2:59607477-59607496 None:intergenic 50.0%
! AGAAGGTGTGGCTGCAAACA+AGG - chr1_2:59607502-59607521 None:intergenic 50.0%
GTTGACCAAGACATTCCAGG+TGG + chr1_2:59607536-59607555 Msa0081080:CDS 50.0%
ATTCCAGGTGGGTACCAAAG+AGG + chr1_2:59607548-59607567 Msa0081080:CDS 50.0%
AGGCAAGGTCAGCAACACAG+AGG - chr1_2:59606243-59606262 None:intergenic 55.0%
! TGTGTTGCTGACCTTGCCTC+AGG + chr1_2:59606244-59606263 Msa0081080:CDS 55.0%
AAGGGTAGGTACCTGAGGCA+AGG - chr1_2:59606258-59606277 None:intergenic 55.0%
ATAGGGGGCGGGAATAATGG+GGG - chr1_2:59606399-59606418 None:intergenic 55.0%
TCTCCACTCTCAAGGTGGCA+TGG - chr1_2:59606913-59606932 None:intergenic 55.0%
AGGATTGACTATGCCCCAGG+TGG + chr1_2:59607237-59607256 Msa0081080:CDS 55.0%
AAGCACAAACACGACCTCGG+TGG - chr1_2:59607292-59607311 None:intergenic 55.0%
GGTACCCACCTGGAATGTCT+TGG - chr1_2:59607544-59607563 None:intergenic 55.0%
CAACCTCTTTGGTACCCACC+TGG - chr1_2:59607554-59607573 None:intergenic 55.0%
AGGCAAGGTCAGCAACACAG+AGG - chr1_2:59606243-59606262 None:intergenic 55.0%
! TGTGTTGCTGACCTTGCCTC+AGG + chr1_2:59606244-59606263 Msa0081080:CDS 55.0%
AAGGGTAGGTACCTGAGGCA+AGG - chr1_2:59606258-59606277 None:intergenic 55.0%
ATAGGGGGCGGGAATAATGG+GGG - chr1_2:59606399-59606418 None:intergenic 55.0%
TCTCCACTCTCAAGGTGGCA+TGG - chr1_2:59606913-59606932 None:intergenic 55.0%
AGGATTGACTATGCCCCAGG+TGG + chr1_2:59607237-59607256 Msa0081080:CDS 55.0%
AAGCACAAACACGACCTCGG+TGG - chr1_2:59607292-59607311 None:intergenic 55.0%
GGTACCCACCTGGAATGTCT+TGG - chr1_2:59607544-59607563 None:intergenic 55.0%
CAACCTCTTTGGTACCCACC+TGG - chr1_2:59607554-59607573 None:intergenic 55.0%
CCACTCTCAAGGTGGCATGG+AGG - chr1_2:59606910-59606929 None:intergenic 60.0%
CCTCCATGCCACCTTGAGAG+TGG + chr1_2:59606907-59606926 Msa0081080:intron 60.0%
!! GGTGAGTGTGAGGTGGGTTG+AGG - chr1_2:59607263-59607282 None:intergenic 60.0%
CCACTCTCAAGGTGGCATGG+AGG - chr1_2:59606910-59606929 None:intergenic 60.0%
CCTCCATGCCACCTTGAGAG+TGG + chr1_2:59606907-59606926 Msa0081080:intron 60.0%
!! GGTGAGTGTGAGGTGGGTTG+AGG - chr1_2:59607263-59607282 None:intergenic 60.0%
!! AGGTGGGTTGAGGCCACCTG+GGG - chr1_2:59607253-59607272 None:intergenic 65.0%
!! GAGGTGGGTTGAGGCCACCT+GGG - chr1_2:59607254-59607273 None:intergenic 65.0%
!! TGAGGTGGGTTGAGGCCACC+TGG - chr1_2:59607255-59607274 None:intergenic 65.0%
CGCGTGGGTGAGTGTGAGGT+GGG - chr1_2:59607269-59607288 None:intergenic 65.0%
!! AGGTGGGTTGAGGCCACCTG+GGG - chr1_2:59607253-59607272 None:intergenic 65.0%
!! GAGGTGGGTTGAGGCCACCT+GGG - chr1_2:59607254-59607273 None:intergenic 65.0%
!! TGAGGTGGGTTGAGGCCACC+TGG - chr1_2:59607255-59607274 None:intergenic 65.0%
CGCGTGGGTGAGTGTGAGGT+GGG - chr1_2:59607269-59607288 None:intergenic 65.0%
GCGCGTGGGTGAGTGTGAGG+TGG - chr1_2:59607270-59607289 None:intergenic 70.0%
GTGGCGCGTGGGTGAGTGTG+AGG - chr1_2:59607273-59607292 None:intergenic 70.0%
ACACGACCTCGGTGGCGCGT+GGG - chr1_2:59607284-59607303 None:intergenic 70.0%
AACACGACCTCGGTGGCGCG+TGG - chr1_2:59607285-59607304 None:intergenic 70.0%
GCGCGTGGGTGAGTGTGAGG+TGG - chr1_2:59607270-59607289 None:intergenic 70.0%
GTGGCGCGTGGGTGAGTGTG+AGG - chr1_2:59607273-59607292 None:intergenic 70.0%
ACACGACCTCGGTGGCGCGT+GGG - chr1_2:59607284-59607303 None:intergenic 70.0%
AACACGACCTCGGTGGCGCG+TGG - chr1_2:59607285-59607304 None:intergenic 70.0%
CACTCACCCACGCGCCACCG+AGG + chr1_2:59607275-59607294 Msa0081080:CDS 75.0%
CACTCACCCACGCGCCACCG+AGG + chr1_2:59607275-59607294 Msa0081080:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59606014 59607950 59606014 ID=Msa0081080;Name=Msa0081080
chr1_2 mRNA 59606014 59607950 59606014 ID=Msa0081080-mRNA-1;Parent=Msa0081080;Name=Msa0081080-mRNA-1;_AED=0.00;_eAED=0.00;_QI=140|1|1|1|1|1|2|342|218
chr1_2 exon 59606014 59606265 59606014 ID=Msa0081080-mRNA-1:exon:19283;Parent=Msa0081080-mRNA-1
chr1_2 exon 59607064 59607950 59607064 ID=Msa0081080-mRNA-1:exon:19284;Parent=Msa0081080-mRNA-1
chr1_2 five_prime_UTR 59606014 59606153 59606014 ID=Msa0081080-mRNA-1:five_prime_utr;Parent=Msa0081080-mRNA-1
chr1_2 CDS 59606154 59606265 59606154 ID=Msa0081080-mRNA-1:cds;Parent=Msa0081080-mRNA-1
chr1_2 CDS 59607064 59607608 59607064 ID=Msa0081080-mRNA-1:cds;Parent=Msa0081080-mRNA-1
chr1_2 three_prime_UTR 59607609 59607950 59607609 ID=Msa0081080-mRNA-1:three_prime_utr;Parent=Msa0081080-mRNA-1
Gene Sequence

>Msa0081080

ATGAAGCTTGAACATTCCTTGTTTCTTGGGACTTTGGCTCTGCTCTTAGCCACCTCTTTCTCATCAGATCCTGACTATCTTCAAGACCTCTGTGTTGCTGACCTTGCCTCAGGTGTAAAAGTGAACGGATTCACTTGCAAAGAGGCATCCAAGGTAAATGCCTCTGATTTCTCCTCCAACATACTAGCCAAACCAGGAAGCACCAACAACACATTTGGCTCAGTGGTGACTGGAGCCAACGTTCAGAAAGTTCCAGGACTCAACACTCTTGGTGTGTCTCTGTCAAGGATTGACTATGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGCGCCACCGAGGTCGTGTTTGTGCTTGAAGGGCAACTAGATGTTGGGTTCATAACCACAGCCAATGTGCTCATATCGAAGACAATTAGCAAGGGTGAGATATTTGTGTTCCCAAAAGCCTTGGTTCACTTCCAAAAGAACAATGCCAATGTACCTGCTGCTGTTCTTTCTGCATTCAACAGCCAACTTCCTGGTACACAGTCCATTGCTACTACCTTGTTTGCAGCCACACCTTCTGTTCCAGACAATGTGTTGACCAAGACATTCCAGGTGGGTACCAAAGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAAAAGTAA
Protein sequence

>Msa0081080

MKLEHSLFLGTLALLLATSFSSDPDYLQDLCVADLASGVKVNGFTCKEASKVNASDFSSNILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTISKGEIFVFPKALVHFQKNNANVPAAVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLAPKK*