AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1191550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191550 MtrunA17_Chr8g0334501 97.619 462 10 1 1 462 1 461 0.0 943
Msa1191550 MtrunA17_Chr7g0245051 80.047 426 81 1 40 461 32 457 0.0 739
Msa1191550 MtrunA17_Chr7g0245101 76.818 440 97 2 27 461 19 458 0.0 726
Msa1191550 MtrunA17_Chr4g0020521 51.187 379 182 1 64 442 35 410 3.22e-148 428
Msa1191550 MtrunA17_Chr5g0404601 51.938 387 183 2 56 441 24 408 7.33e-145 421
Msa1191550 MtrunA17_Chr1g0193531 52.703 370 172 2 64 433 30 396 3.58e-143 415
Msa1191550 MtrunA17_Chr1g0193611 51.081 370 179 1 64 433 33 400 5.55e-141 410
Msa1191550 MtrunA17_Chr7g0271511 49.618 393 185 3 41 433 47 426 1.60e-140 409
Msa1191550 MtrunA17_Chr3g0141751 49.602 377 182 3 58 432 21 391 1.67e-139 406
Msa1191550 MtrunA17_Chr1g0193551 52.162 370 173 3 64 433 36 401 1.89e-139 406
Msa1191550 MtrunA17_Chr1g0193601 51.081 370 179 1 64 433 33 400 4.01e-138 402
Msa1191550 MtrunA17_Chr4g0040121 47.959 392 199 3 50 436 23 414 4.41e-136 398
Msa1191550 MtrunA17_Chr2g0324441 46.579 380 200 2 57 433 34 413 2.10e-130 384
Msa1191550 MtrunA17_Chr1g0193541 46.237 372 161 4 64 433 32 366 4.94e-114 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1191550 AT5G01930.1 67.615 457 129 4 7 461 8 447 0.0 654
Msa1191550 AT4G28320.1 47.848 395 196 2 58 442 36 430 4.10e-138 404
Msa1191550 AT2G20680.1 49.337 377 190 1 58 433 37 413 1.83e-135 397
Msa1191550 AT5G66460.1 49.471 378 188 1 64 441 32 406 4.45e-135 396
Msa1191550 AT3G10890.1 48.257 373 191 2 64 435 32 403 2.54e-133 391
Msa1191550 AT3G10900.1 48.930 374 188 3 64 435 30 402 1.24e-130 384
Msa1191550 AT1G02310.2 47.326 374 186 6 64 432 50 417 1.19e-121 362
Msa1191550 AT1G02310.1 47.326 374 186 6 64 432 30 397 1.26e-121 361
Msa1191550 AT3G30540.1 44.012 334 148 3 64 396 30 325 4.26e-95 290

Find 122 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTTGAGCATATGAATT+TGG 0.114525 8_1:+36135588 None:intergenic
GACCAACCTTTCTATGTAAA+TGG 0.163607 8_1:-36136575 Msa1191550:CDS
CCAAATTCCATCTTAACTTA+TGG 0.180101 8_1:-36136752 Msa1191550:CDS
CCATAAGTTAAGATGGAATT+TGG 0.274969 8_1:+36136752 None:intergenic
TAAATGGATTCAACACTTAC+TGG 0.284522 8_1:-36136559 Msa1191550:CDS
GAAAGGAAATAACACATAAT+TGG 0.289737 8_1:+36136864 None:intergenic
CAGAGCAGAGGGAGTTGAAT+AGG 0.306615 8_1:+36135031 None:intergenic
CTCCTCTGGTGATACGTTAC+AGG 0.324607 8_1:-36135975 Msa1191550:intron
GTTGGTCATTCACTGCAAAT+TGG 0.331406 8_1:+36136591 None:intergenic
CAAATTCCATCTTAACTTAT+GGG 0.334308 8_1:-36136751 Msa1191550:intron
TATTATCATTGGTTAACAAT+TGG 0.335350 8_1:-36136322 Msa1191550:CDS
ATCAGAAACCACCAGGTTCT+AGG 0.336789 8_1:-36135552 Msa1191550:CDS
CCCAAATTCATATGCTCAAC+AGG 0.348303 8_1:-36135589 Msa1191550:CDS
ACTCACAAATATCACTTATA+AGG 0.349810 8_1:-36136053 Msa1191550:CDS
TTGAATCCATTTACATAGAA+AGG 0.367924 8_1:+36136569 None:intergenic
ATTATCATTGGTTAACAATT+GGG 0.370572 8_1:-36136321 Msa1191550:CDS
GTATGACAGTTTGTAGGACT+TGG 0.375713 8_1:-36136463 Msa1191550:CDS
AAGACTTCACAAATGGGATA+TGG 0.386757 8_1:+36135349 None:intergenic
ATTCAACACTTACTGGTTGA+TGG 0.393983 8_1:-36136552 Msa1191550:CDS
CTACTGGAGATTGGCCTAGA+AGG 0.395563 8_1:-36135651 Msa1191550:CDS
CTGGGGTTGTAAGAAGAAAA+AGG 0.407765 8_1:-36134998 Msa1191550:CDS
CAGTTGGTATGACAGTTTGT+AGG 0.408046 8_1:-36136469 Msa1191550:CDS
TTGTGGCAGTTCTTTCCTGA+TGG 0.418500 8_1:-36135144 Msa1191550:CDS
GTCAAGTGGGGCAATGCTGC+TGG 0.420167 8_1:-36136272 Msa1191550:CDS
AATCAGACTCATATTATCAT+TGG 0.423314 8_1:-36136333 Msa1191550:CDS
TCTCCATTGGCCATCATTGA+AGG 0.427709 8_1:+36136439 None:intergenic
TCCATCCAAGACTTCACAAA+TGG 0.428524 8_1:+36135342 None:intergenic
CCAATCTCCAGTAGGTGTTT+CGG 0.433449 8_1:+36135660 None:intergenic
AGGGGCCATAAAATCCTTCT+AGG 0.439788 8_1:+36135637 None:intergenic
AAGGAACCTTACCAAGAGTC+TGG 0.441773 8_1:+36135501 None:intergenic
ATTTCTGAAGGGCTCTCCAT+TGG 0.442818 8_1:+36136426 None:intergenic
GAGGATGCTGAAAAGTATCT+TGG 0.444822 8_1:-36135309 Msa1191550:CDS
ATGACACTGAATATGAAGAT+TGG 0.449152 8_1:-36136793 Msa1191550:CDS
TTATGATGAAGTAGTATTCA+AGG 0.449801 8_1:-36136393 Msa1191550:CDS
AGAGCAGAGGGAGTTGAATA+GGG 0.450240 8_1:+36135032 None:intergenic
CTGCTCTGAGAGATGCCACT+GGG 0.450365 8_1:-36135016 Msa1191550:CDS
GTTAACAATTGGGAGGCATA+TGG 0.457775 8_1:-36136311 Msa1191550:CDS
CCTGTTGAGCATATGAATTT+GGG 0.458492 8_1:+36135589 None:intergenic
CCGAAACACCTACTGGAGAT+TGG 0.462360 8_1:-36135660 Msa1191550:CDS
TGAAATCTCTGAGGTGTTGA+GGG 0.462829 8_1:+36135618 None:intergenic
ATATCCCATTTGTGAAGTCT+TGG 0.463092 8_1:-36135347 Msa1191550:CDS
GATATCATGCTTGAAATAGA+AGG 0.473952 8_1:+36135075 None:intergenic
GGGCAAGCCTTGTGGATTGA+AGG 0.483170 8_1:+36135052 None:intergenic
AGGACTTGGGCCTTCAATGA+TGG 0.484180 8_1:-36136449 Msa1191550:CDS
ATCCATTTACATAGAAAGGT+TGG 0.484246 8_1:+36136573 None:intergenic
TCTGCTCTGAGAGATGCCAC+TGG 0.484589 8_1:-36135017 Msa1191550:CDS
ATTCTAAACTCTACAAAGAA+AGG 0.486329 8_1:-36135189 Msa1191550:CDS
ACATGCATACACACTCTGGC+TGG 0.489169 8_1:-36136922 None:intergenic
TCCATGTAATCTGTTCCATC+AGG 0.489401 8_1:+36135129 None:intergenic
CGTTGATCCGAAACACCTAC+TGG 0.492407 8_1:-36135667 Msa1191550:CDS
CGATGCACCTCTGACTCCTC+TGG 0.493066 8_1:-36135989 Msa1191550:CDS
AAGAAAGGAGGTAGTGGGGC+TGG 0.494489 8_1:-36135174 Msa1191550:CDS
GGTGTATCTGCAAAAGATCC+TGG 0.494622 8_1:-36135261 Msa1191550:CDS
CTCATATATATCCAGACTCT+TGG 0.494942 8_1:-36135512 Msa1191550:intron
TACGTACCCATAAGTTAAGA+TGG 0.495593 8_1:+36136745 None:intergenic
TGGCTGGGTAACATAACATA+TGG 0.496590 8_1:-36136906 Msa1191550:exon
CTTCACTCACCACAAAATCC+AGG 0.501627 8_1:+36136369 None:intergenic
CAGGAAAGAACTGCCACAAA+AGG 0.501942 8_1:+36135148 None:intergenic
CTATATGTTGAATTATAACC+AGG 0.502559 8_1:+36135243 None:intergenic
TATGACAGTTTGTAGGACTT+GGG 0.504511 8_1:-36136462 Msa1191550:CDS
TGGCAGATGGTGCAAAAGAA+AGG 0.506336 8_1:-36136617 Msa1191550:CDS
TGAAGTAGTATTCAAGGCCC+TGG 0.508682 8_1:-36136387 Msa1191550:CDS
CCCATTTGTGAAGTCTTGGA+TGG 0.515184 8_1:-36135343 Msa1191550:CDS
TTCAAACATGCATTCTCAGT+TGG 0.518806 8_1:-36136485 Msa1191550:CDS
TTGTAGTAGCCTCTGAGAGT+TGG 0.519117 8_1:+36136212 None:intergenic
TGACACTGAATATGAAGATT+GGG 0.520692 8_1:-36136792 Msa1191550:CDS
ATCAAATGCAGTTGAGCTGA+AGG 0.526679 8_1:+36136814 None:intergenic
TCCTGATGGAACAGATTACA+TGG 0.528541 8_1:-36135130 Msa1191550:CDS
CTGAAATCTCTGAGGTGTTG+AGG 0.529947 8_1:+36135617 None:intergenic
CCATCCAAGACTTCACAAAT+GGG 0.530333 8_1:+36135343 None:intergenic
GCAAAGCACAGTATGTCAAG+TGG 0.532392 8_1:-36136286 Msa1191550:CDS
TCTACAAAGAAAGGAGGTAG+TGG 0.533604 8_1:-36135180 Msa1191550:CDS
CATCATCAGAGGTCAAGTTA+AGG 0.540046 8_1:+36136249 None:intergenic
CTACAAAGAAAGGAGGTAGT+GGG 0.553421 8_1:-36135179 Msa1191550:CDS
CATGCATACACACTCTGGCT+GGG 0.554834 8_1:-36136921 Msa1191550:five_prime_UTR
AAAGTGATGGTGATTTCTGA+AGG 0.556976 8_1:+36136414 None:intergenic
CGGACGAGTCGACAAGAGGA+AGG 0.559006 8_1:-36136520 Msa1191550:CDS
GGCAAGCCTTGTGGATTGAA+GGG 0.560023 8_1:+36135053 None:intergenic
CAAAGTCGACACCTAGAACC+TGG 0.561106 8_1:+36135541 None:intergenic
AATTCATATGCTCAACAGGT+TGG 0.561704 8_1:-36135585 Msa1191550:CDS
CAAAGCACAGTATGTCAAGT+GGG 0.561874 8_1:-36136285 Msa1191550:CDS
TTAGGAATGGATAAAAGAGA+TGG 0.562372 8_1:-36135706 Msa1191550:intron
TTCTTCGTTTATAAAAGAAG+TGG 0.564709 8_1:+36134700 None:intergenic
GTGAAATGGAGGAAGCTGAA+TGG 0.564983 8_1:-36136637 Msa1191550:CDS
AAATGTAGTCTACGAGGATG+AGG 0.567019 8_1:-36134968 Msa1191550:CDS
GTGGCATCTCTCAGAGCAGA+GGG 0.567107 8_1:+36135020 None:intergenic
CAATACATGCATACACACTC+TGG 0.570822 8_1:-36136926 None:intergenic
TCTTCGTTTATAAAAGAAGT+GGG 0.571401 8_1:+36134701 None:intergenic
TGGTTTAAGGAGTGAAATGG+AGG 0.578038 8_1:-36136648 Msa1191550:intron
ATCATTGGTTAACAATTGGG+AGG 0.578607 8_1:-36136318 Msa1191550:CDS
AACTCTCAGAGGCTACTACA+AGG 0.578621 8_1:-36136210 Msa1191550:CDS
GTTGAATAGGGCAAGCCTTG+TGG 0.579100 8_1:+36135044 None:intergenic
GACAAGAGGAAGGGTCACTC+AGG 0.585832 8_1:-36136510 Msa1191550:CDS
GCTGCGGACGAGTCGACAAG+AGG 0.586696 8_1:-36136524 Msa1191550:CDS
CTTCTAGGCCAATCTCCAGT+AGG 0.593952 8_1:+36135652 None:intergenic
GGGCCTTCAATGATGGCCAA+TGG 0.595028 8_1:-36136442 Msa1191550:CDS
CGTATCACCAGAGGAGTCAG+AGG 0.597961 8_1:+36135982 None:intergenic
TTCTCACATCCAACTCTCAG+AGG 0.605503 8_1:-36136221 Msa1191550:CDS
CTGGTTGATGGTATTTGCTG+CGG 0.606752 8_1:-36136540 Msa1191550:CDS
GGAACAGATTACATGGATGA+TGG 0.606894 8_1:-36135123 Msa1191550:CDS
CTAAACTCTACAAAGAAAGG+AGG 0.610072 8_1:-36135186 Msa1191550:CDS
ACTACTTCATCATAAAGTGA+TGG 0.615191 8_1:+36136401 None:intergenic
TGAAAAGTATCTTGGAATGC+CGG 0.623758 8_1:-36135301 Msa1191550:CDS
AACAATTGGGAGGCATATGG+TGG 0.626650 8_1:-36136308 Msa1191550:CDS
TTGGATGGAAGCCCACATAG+AGG 0.626696 8_1:-36135328 Msa1191550:CDS
TTCACTCACCACAAAATCCA+GGG 0.626794 8_1:+36136370 None:intergenic
AGTGGCATCTCTCAGAGCAG+AGG 0.630497 8_1:+36135019 None:intergenic
GGACGAGTCGACAAGAGGAA+GGG 0.630959 8_1:-36136519 Msa1191550:CDS
GAAATCTCTGAGGTGTTGAG+GGG 0.645814 8_1:+36135619 None:intergenic
AAGTGATGGTGATTTCTGAA+GGG 0.650216 8_1:+36136415 None:intergenic
TGCTCTGAGAGATGCCACTG+GGG 0.651417 8_1:-36135015 Msa1191550:CDS
TACAAAGAAAGGAGGTAGTG+GGG 0.655170 8_1:-36135178 Msa1191550:CDS
CTACTACAAGGACCATGTCA+AGG 0.659291 8_1:-36136198 Msa1191550:intron
GGAGGAAGCTGAATGGCAGA+TGG 0.662800 8_1:-36136630 Msa1191550:CDS
GCTAGGAACTTACCTTGACA+TGG 0.669271 8_1:+36136186 None:intergenic
TGATATCCCTTCAATCCACA+AGG 0.672007 8_1:-36135059 Msa1191550:CDS
AAAGCACAGTATGTCAAGTG+GGG 0.694927 8_1:-36136284 Msa1191550:CDS
TACCTGTAACGTATCACCAG+AGG 0.699288 8_1:+36135973 None:intergenic
GGGTTGAACTGAAATCTCTG+AGG 0.711750 8_1:+36135609 None:intergenic
GAGGAGTCAGAGGTGCATCG+AGG 0.724283 8_1:+36135992 None:intergenic
GTTGCAAAATGTAGTCTACG+AGG 0.776748 8_1:-36134974 Msa1191550:CDS
AGTCGACACCTAGAACCTGG+TGG 0.780190 8_1:+36135544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAATATATATGGTTTT+TGG - chr8_1:36134807-36134826 Msa1191550:three_prime_UTR 10.0%
!!! GGAAATTTTTATTAATAAAT+TGG + chr8_1:36135625-36135644 None:intergenic 10.0%
!!! AATAATTAATGTTTTTTCTA+CGG - chr8_1:36136889-36136908 Msa1191550:CDS 10.0%
!!! AATTAAATATATATGGTTTT+TGG - chr8_1:36134807-36134826 Msa1191550:three_prime_UTR 10.0%
!!! GGAAATTTTTATTAATAAAT+TGG + chr8_1:36135625-36135644 None:intergenic 10.0%
!!! AATAATTAATGTTTTTTCTA+CGG - chr8_1:36136889-36136908 Msa1191550:CDS 10.0%
!! ATTATTATTATTAGAGTCTT+AGG - chr8_1:36134755-36134774 Msa1191550:three_prime_UTR 15.0%
!! TGTTAATTCTAATTAACTTT+AGG - chr8_1:36134779-36134798 Msa1191550:three_prime_UTR 15.0%
!!! AATTAGTTTAAAAGAAAAAC+AGG + chr8_1:36135342-36135361 None:intergenic 15.0%
!!! GTTTTTCTTTTAAACTAATT+TGG - chr8_1:36135342-36135361 Msa1191550:CDS 15.0%
!! TTAGATGTTTAAAGAAATAA+TGG + chr8_1:36136059-36136078 None:intergenic 15.0%
!! NNNNNNNNTGGAATAAATAC+AGG - chr8_1:36136633-36136652 Msa1191550:CDS 15.0%
!!! ATTTTTTCAAAAACAAAAGT+TGG + chr8_1:36136836-36136855 None:intergenic 15.0%
!! TTTGAAAAAATCAAAAGTTA+AGG - chr8_1:36136845-36136864 Msa1191550:CDS 15.0%
!!! ATAATTAATGTTTTTTCTAC+GGG - chr8_1:36136890-36136909 Msa1191550:CDS 15.0%
!! ATTATTATTATTAGAGTCTT+AGG - chr8_1:36134755-36134774 Msa1191550:three_prime_UTR 15.0%
!! TGTTAATTCTAATTAACTTT+AGG - chr8_1:36134779-36134798 Msa1191550:three_prime_UTR 15.0%
!!! AATTAGTTTAAAAGAAAAAC+AGG + chr8_1:36135342-36135361 None:intergenic 15.0%
!!! GTTTTTCTTTTAAACTAATT+TGG - chr8_1:36135342-36135361 Msa1191550:CDS 15.0%
!! TTAGATGTTTAAAGAAATAA+TGG + chr8_1:36136059-36136078 None:intergenic 15.0%
!! NNNNNNNNTGGAATAAATAC+AGG - chr8_1:36136633-36136652 Msa1191550:CDS 15.0%
!!! ATTTTTTCAAAAACAAAAGT+TGG + chr8_1:36136836-36136855 None:intergenic 15.0%
!! TTTGAAAAAATCAAAAGTTA+AGG - chr8_1:36136845-36136864 Msa1191550:CDS 15.0%
!!! ATAATTAATGTTTTTTCTAC+GGG - chr8_1:36136890-36136909 Msa1191550:CDS 15.0%
!! GGCACTTAATTAAATATATA+TGG - chr8_1:36134800-36134819 Msa1191550:three_prime_UTR 20.0%
!!! TATATATGGTTTTTGGTTTA+AGG - chr8_1:36134814-36134833 Msa1191550:three_prime_UTR 20.0%
!!! TATTATCATTGGTTAACAAT+TGG - chr8_1:36135153-36135172 Msa1191550:CDS 20.0%
!!! ATTATCATTGGTTAACAATT+GGG - chr8_1:36135154-36135173 Msa1191550:CDS 20.0%
!! TGGAAAAAAATTAGAAAAGA+GGG + chr8_1:36135646-36135665 None:intergenic 20.0%
!! ATGGAAAAAAATTAGAAAAG+AGG + chr8_1:36135647-36135666 None:intergenic 20.0%
!! GCAATATTATTATTGTGTTT+GGG + chr8_1:36135685-36135704 None:intergenic 20.0%
!! TGCAATATTATTATTGTGTT+TGG + chr8_1:36135686-36135705 None:intergenic 20.0%
!! AATATATTCAATTGAGTTCA+AGG + chr8_1:36135747-36135766 None:intergenic 20.0%
!! CTCAATTGAATATATTCTTT+AGG - chr8_1:36135751-36135770 Msa1191550:intron 20.0%
!!! TTGAATATATTCTTTAGGAA+TGG - chr8_1:36135756-36135775 Msa1191550:intron 20.0%
!! ATGTTTAAAGAAATAATGGT+TGG + chr8_1:36136055-36136074 None:intergenic 20.0%
!!! AAAAACAATTATTTTGAGAC+AGG - chr8_1:36136734-36136753 Msa1191550:intron 20.0%
!!! AAAACAATTATTTTGAGACA+GGG - chr8_1:36136735-36136754 Msa1191550:intron 20.0%
!! GGCACTTAATTAAATATATA+TGG - chr8_1:36134800-36134819 Msa1191550:three_prime_UTR 20.0%
!!! TATATATGGTTTTTGGTTTA+AGG - chr8_1:36134814-36134833 Msa1191550:three_prime_UTR 20.0%
!!! TATTATCATTGGTTAACAAT+TGG - chr8_1:36135153-36135172 Msa1191550:CDS 20.0%
!!! ATTATCATTGGTTAACAATT+GGG - chr8_1:36135154-36135173 Msa1191550:CDS 20.0%
!! TGGAAAAAAATTAGAAAAGA+GGG + chr8_1:36135646-36135665 None:intergenic 20.0%
!! ATGGAAAAAAATTAGAAAAG+AGG + chr8_1:36135647-36135666 None:intergenic 20.0%
!! GCAATATTATTATTGTGTTT+GGG + chr8_1:36135685-36135704 None:intergenic 20.0%
!! TGCAATATTATTATTGTGTT+TGG + chr8_1:36135686-36135705 None:intergenic 20.0%
!! AATATATTCAATTGAGTTCA+AGG + chr8_1:36135747-36135766 None:intergenic 20.0%
!! CTCAATTGAATATATTCTTT+AGG - chr8_1:36135751-36135770 Msa1191550:intron 20.0%
!!! TTGAATATATTCTTTAGGAA+TGG - chr8_1:36135756-36135775 Msa1191550:intron 20.0%
!! ATGTTTAAAGAAATAATGGT+TGG + chr8_1:36136055-36136074 None:intergenic 20.0%
!!! AAAAACAATTATTTTGAGAC+AGG - chr8_1:36136734-36136753 Msa1191550:intron 20.0%
!!! AAAACAATTATTTTGAGACA+GGG - chr8_1:36136735-36136754 Msa1191550:intron 20.0%
! GAAAGGAAATAACACATAAT+TGG + chr8_1:36134614-36134633 None:intergenic 25.0%
! AATAGTGAGAAAAATGAGAA+AGG + chr8_1:36134631-36134650 None:intergenic 25.0%
! CAAATTCCATCTTAACTTAT+GGG - chr8_1:36134724-36134743 Msa1191550:three_prime_UTR 25.0%
! TTGAATCCATTTACATAGAA+AGG + chr8_1:36134909-36134928 None:intergenic 25.0%
! TTATGATGAAGTAGTATTCA+AGG - chr8_1:36135082-36135101 Msa1191550:CDS 25.0%
! AATCAGACTCATATTATCAT+TGG - chr8_1:36135142-36135161 Msa1191550:CDS 25.0%
! GATCAATCAAGAAATAGTAT+AGG + chr8_1:36135370-36135389 None:intergenic 25.0%
! ACTCACAAATATCACTTATA+AGG - chr8_1:36135422-36135441 Msa1191550:intron 25.0%
! TTGTTTCAAAGAGTTCAAAT+TGG + chr8_1:36135575-36135594 None:intergenic 25.0%
! TAATAAATTGGCGCTAAAAA+GGG + chr8_1:36135613-36135632 None:intergenic 25.0%
! TTAATAAATTGGCGCTAAAA+AGG + chr8_1:36135614-36135633 None:intergenic 25.0%
!!! TGGGTTTCTTTTTGAAAATA+TGG + chr8_1:36135666-36135685 None:intergenic 25.0%
! TCTTTAAACATCTAACATTC+AGG - chr8_1:36136064-36136083 Msa1191550:CDS 25.0%
! CTATATGTTGAATTATAACC+AGG + chr8_1:36136235-36136254 None:intergenic 25.0%
! ATTCTAAACTCTACAAAGAA+AGG - chr8_1:36136286-36136305 Msa1191550:CDS 25.0%
! TCTTCGTTTATAAAAGAAGT+GGG + chr8_1:36136777-36136796 None:intergenic 25.0%
! TTCTTCGTTTATAAAAGAAG+TGG + chr8_1:36136778-36136797 None:intergenic 25.0%
! GAAAGGAAATAACACATAAT+TGG + chr8_1:36134614-36134633 None:intergenic 25.0%
! AATAGTGAGAAAAATGAGAA+AGG + chr8_1:36134631-36134650 None:intergenic 25.0%
! CAAATTCCATCTTAACTTAT+GGG - chr8_1:36134724-36134743 Msa1191550:three_prime_UTR 25.0%
! TTGAATCCATTTACATAGAA+AGG + chr8_1:36134909-36134928 None:intergenic 25.0%
! TTATGATGAAGTAGTATTCA+AGG - chr8_1:36135082-36135101 Msa1191550:CDS 25.0%
! AATCAGACTCATATTATCAT+TGG - chr8_1:36135142-36135161 Msa1191550:CDS 25.0%
! GATCAATCAAGAAATAGTAT+AGG + chr8_1:36135370-36135389 None:intergenic 25.0%
! ACTCACAAATATCACTTATA+AGG - chr8_1:36135422-36135441 Msa1191550:intron 25.0%
! TTGTTTCAAAGAGTTCAAAT+TGG + chr8_1:36135575-36135594 None:intergenic 25.0%
! TAATAAATTGGCGCTAAAAA+GGG + chr8_1:36135613-36135632 None:intergenic 25.0%
! TTAATAAATTGGCGCTAAAA+AGG + chr8_1:36135614-36135633 None:intergenic 25.0%
!!! TGGGTTTCTTTTTGAAAATA+TGG + chr8_1:36135666-36135685 None:intergenic 25.0%
! TCTTTAAACATCTAACATTC+AGG - chr8_1:36136064-36136083 Msa1191550:CDS 25.0%
! CTATATGTTGAATTATAACC+AGG + chr8_1:36136235-36136254 None:intergenic 25.0%
! ATTCTAAACTCTACAAAGAA+AGG - chr8_1:36136286-36136305 Msa1191550:CDS 25.0%
! TCTTCGTTTATAAAAGAAGT+GGG + chr8_1:36136777-36136796 None:intergenic 25.0%
! TTCTTCGTTTATAAAAGAAG+TGG + chr8_1:36136778-36136797 None:intergenic 25.0%
ATGACACTGAATATGAAGAT+TGG - chr8_1:36134682-36134701 Msa1191550:three_prime_UTR 30.0%
TGACACTGAATATGAAGATT+GGG - chr8_1:36134683-36134702 Msa1191550:three_prime_UTR 30.0%
CCATAAGTTAAGATGGAATT+TGG + chr8_1:36134726-36134745 None:intergenic 30.0%
CCAAATTCCATCTTAACTTA+TGG - chr8_1:36134723-36134742 Msa1191550:three_prime_UTR 30.0%
!!! TTTTGGTTTAAGGAGTGAAA+TGG - chr8_1:36134824-36134843 Msa1191550:three_prime_UTR 30.0%
ATCCATTTACATAGAAAGGT+TGG + chr8_1:36134905-36134924 None:intergenic 30.0%
! TAAATGGATTCAACACTTAC+TGG - chr8_1:36134916-36134935 Msa1191550:intron 30.0%
ACTACTTCATCATAAAGTGA+TGG + chr8_1:36135077-36135096 None:intergenic 30.0%
!!! AACAGGAAGCATTAAGTTTT+AGG + chr8_1:36135325-36135344 None:intergenic 30.0%
! AAGATCCAACAATTTTTGCT+TGG - chr8_1:36135445-36135464 Msa1191550:intron 30.0%
! AGATCCAACAATTTTTGCTT+GGG - chr8_1:36135446-36135465 Msa1191550:intron 30.0%
AATAAATTGGCGCTAAAAAG+GGG + chr8_1:36135612-36135631 None:intergenic 30.0%
TATTCAATTGAGTTCAAGGA+AGG + chr8_1:36135743-36135762 None:intergenic 30.0%
TTAGGAATGGATAAAAGAGA+TGG - chr8_1:36135769-36135788 Msa1191550:intron 30.0%
GATATCATGCTTGAAATAGA+AGG + chr8_1:36136403-36136422 None:intergenic 30.0%
ATGACACTGAATATGAAGAT+TGG - chr8_1:36134682-36134701 Msa1191550:three_prime_UTR 30.0%
TGACACTGAATATGAAGATT+GGG - chr8_1:36134683-36134702 Msa1191550:three_prime_UTR 30.0%
CCATAAGTTAAGATGGAATT+TGG + chr8_1:36134726-36134745 None:intergenic 30.0%
CCAAATTCCATCTTAACTTA+TGG - chr8_1:36134723-36134742 Msa1191550:three_prime_UTR 30.0%
!!! TTTTGGTTTAAGGAGTGAAA+TGG - chr8_1:36134824-36134843 Msa1191550:three_prime_UTR 30.0%
ATCCATTTACATAGAAAGGT+TGG + chr8_1:36134905-36134924 None:intergenic 30.0%
! TAAATGGATTCAACACTTAC+TGG - chr8_1:36134916-36134935 Msa1191550:intron 30.0%
ACTACTTCATCATAAAGTGA+TGG + chr8_1:36135077-36135096 None:intergenic 30.0%
!!! AACAGGAAGCATTAAGTTTT+AGG + chr8_1:36135325-36135344 None:intergenic 30.0%
! AAGATCCAACAATTTTTGCT+TGG - chr8_1:36135445-36135464 Msa1191550:intron 30.0%
! AGATCCAACAATTTTTGCTT+GGG - chr8_1:36135446-36135465 Msa1191550:intron 30.0%
AATAAATTGGCGCTAAAAAG+GGG + chr8_1:36135612-36135631 None:intergenic 30.0%
TATTCAATTGAGTTCAAGGA+AGG + chr8_1:36135743-36135762 None:intergenic 30.0%
TTAGGAATGGATAAAAGAGA+TGG - chr8_1:36135769-36135788 Msa1191550:intron 30.0%
GATATCATGCTTGAAATAGA+AGG + chr8_1:36136403-36136422 None:intergenic 30.0%
TACGTACCCATAAGTTAAGA+TGG + chr8_1:36134733-36134752 None:intergenic 35.0%
GACCAACCTTTCTATGTAAA+TGG - chr8_1:36134900-36134919 Msa1191550:intron 35.0%
! ATTCAACACTTACTGGTTGA+TGG - chr8_1:36134923-36134942 Msa1191550:intron 35.0%
TTCAAACATGCATTCTCAGT+TGG - chr8_1:36134990-36135009 Msa1191550:CDS 35.0%
TATGACAGTTTGTAGGACTT+GGG - chr8_1:36135013-36135032 Msa1191550:CDS 35.0%
! AAGTGATGGTGATTTCTGAA+GGG + chr8_1:36135063-36135082 None:intergenic 35.0%
! AAAGTGATGGTGATTTCTGA+AGG + chr8_1:36135064-36135083 None:intergenic 35.0%
! ATCATTGGTTAACAATTGGG+AGG - chr8_1:36135157-36135176 Msa1191550:CDS 35.0%
TGAGAAAAAGTCATCATCAG+AGG + chr8_1:36135240-36135259 None:intergenic 35.0%
!! TTTTAGGTACATCTCAAGCT+AGG + chr8_1:36135309-36135328 None:intergenic 35.0%
ATAAATTGGCGCTAAAAAGG+GGG + chr8_1:36135611-36135630 None:intergenic 35.0%
!! ATTGGCCTAGAAGGATTTTA+TGG - chr8_1:36135833-36135852 Msa1191550:intron 35.0%
CCTGTTGAGCATATGAATTT+GGG + chr8_1:36135889-36135908 None:intergenic 35.0%
ACCTGTTGAGCATATGAATT+TGG + chr8_1:36135890-36135909 None:intergenic 35.0%
AATTCATATGCTCAACAGGT+TGG - chr8_1:36135890-36135909 Msa1191550:intron 35.0%
! TGATTTTATCAGAAACCACC+AGG - chr8_1:36135916-36135935 Msa1191550:intron 35.0%
CTCATATATATCCAGACTCT+TGG - chr8_1:36135963-36135982 Msa1191550:intron 35.0%
ATATATCCAGACTCTTGGTA+AGG - chr8_1:36135968-36135987 Msa1191550:intron 35.0%
TACTTAAGTAGAAGCCATCA+AGG + chr8_1:36136000-36136019 None:intergenic 35.0%
GATTGTGAAATCCTTCAACA+AGG + chr8_1:36136094-36136113 None:intergenic 35.0%
AAGACTTCACAAATGGGATA+TGG + chr8_1:36136129-36136148 None:intergenic 35.0%
ATATCCCATTTGTGAAGTCT+TGG - chr8_1:36136128-36136147 Msa1191550:intron 35.0%
!! TGAAAAGTATCTTGGAATGC+CGG - chr8_1:36136174-36136193 Msa1191550:intron 35.0%
CTAAACTCTACAAAGAAAGG+AGG - chr8_1:36136289-36136308 Msa1191550:CDS 35.0%
TACGTACCCATAAGTTAAGA+TGG + chr8_1:36134733-36134752 None:intergenic 35.0%
GACCAACCTTTCTATGTAAA+TGG - chr8_1:36134900-36134919 Msa1191550:intron 35.0%
! ATTCAACACTTACTGGTTGA+TGG - chr8_1:36134923-36134942 Msa1191550:intron 35.0%
TTCAAACATGCATTCTCAGT+TGG - chr8_1:36134990-36135009 Msa1191550:CDS 35.0%
TATGACAGTTTGTAGGACTT+GGG - chr8_1:36135013-36135032 Msa1191550:CDS 35.0%
! AAGTGATGGTGATTTCTGAA+GGG + chr8_1:36135063-36135082 None:intergenic 35.0%
! AAAGTGATGGTGATTTCTGA+AGG + chr8_1:36135064-36135083 None:intergenic 35.0%
! ATCATTGGTTAACAATTGGG+AGG - chr8_1:36135157-36135176 Msa1191550:CDS 35.0%
TGAGAAAAAGTCATCATCAG+AGG + chr8_1:36135240-36135259 None:intergenic 35.0%
!! TTTTAGGTACATCTCAAGCT+AGG + chr8_1:36135309-36135328 None:intergenic 35.0%
ATAAATTGGCGCTAAAAAGG+GGG + chr8_1:36135611-36135630 None:intergenic 35.0%
!! ATTGGCCTAGAAGGATTTTA+TGG - chr8_1:36135833-36135852 Msa1191550:intron 35.0%
CCTGTTGAGCATATGAATTT+GGG + chr8_1:36135889-36135908 None:intergenic 35.0%
ACCTGTTGAGCATATGAATT+TGG + chr8_1:36135890-36135909 None:intergenic 35.0%
AATTCATATGCTCAACAGGT+TGG - chr8_1:36135890-36135909 Msa1191550:intron 35.0%
! TGATTTTATCAGAAACCACC+AGG - chr8_1:36135916-36135935 Msa1191550:intron 35.0%
CTCATATATATCCAGACTCT+TGG - chr8_1:36135963-36135982 Msa1191550:intron 35.0%
ATATATCCAGACTCTTGGTA+AGG - chr8_1:36135968-36135987 Msa1191550:intron 35.0%
TACTTAAGTAGAAGCCATCA+AGG + chr8_1:36136000-36136019 None:intergenic 35.0%
GATTGTGAAATCCTTCAACA+AGG + chr8_1:36136094-36136113 None:intergenic 35.0%
AAGACTTCACAAATGGGATA+TGG + chr8_1:36136129-36136148 None:intergenic 35.0%
ATATCCCATTTGTGAAGTCT+TGG - chr8_1:36136128-36136147 Msa1191550:intron 35.0%
!! TGAAAAGTATCTTGGAATGC+CGG - chr8_1:36136174-36136193 Msa1191550:intron 35.0%
CTAAACTCTACAAAGAAAGG+AGG - chr8_1:36136289-36136308 Msa1191550:CDS 35.0%
TGGCTGGGTAACATAACATA+TGG - chr8_1:36134569-36134588 Msa1191550:three_prime_UTR 40.0%
ATCAAATGCAGTTGAGCTGA+AGG + chr8_1:36134664-36134683 None:intergenic 40.0%
TGGTTTAAGGAGTGAAATGG+AGG - chr8_1:36134827-36134846 Msa1191550:three_prime_UTR 40.0%
GTTGGTCATTCACTGCAAAT+TGG + chr8_1:36134887-36134906 None:intergenic 40.0%
! CAGTTGGTATGACAGTTTGT+AGG - chr8_1:36135006-36135025 Msa1191550:CDS 40.0%
GTATGACAGTTTGTAGGACT+TGG - chr8_1:36135012-36135031 Msa1191550:CDS 40.0%
TTCACTCACCACAAAATCCA+GGG + chr8_1:36135108-36135127 None:intergenic 40.0%
! GTTAACAATTGGGAGGCATA+TGG - chr8_1:36135164-36135183 Msa1191550:CDS 40.0%
CAAAGCACAGTATGTCAAGT+GGG - chr8_1:36135190-36135209 Msa1191550:CDS 40.0%
AAAGCACAGTATGTCAAGTG+GGG - chr8_1:36135191-36135210 Msa1191550:CDS 40.0%
CATCATCAGAGGTCAAGTTA+AGG + chr8_1:36135229-36135248 None:intergenic 40.0%
AGCTCCCAAGCAAAAATTGT+TGG + chr8_1:36135453-36135472 None:intergenic 40.0%
!! TGAAATCTCTGAGGTGTTGA+GGG + chr8_1:36135860-36135879 None:intergenic 40.0%
CCCAAATTCATATGCTCAAC+AGG - chr8_1:36135886-36135905 Msa1191550:intron 40.0%
TAAGTAGAAGCCATCAAGGA+AGG + chr8_1:36135996-36136015 None:intergenic 40.0%
ATTCAGGCTTACCTTGTTGA+AGG - chr8_1:36136080-36136099 Msa1191550:intron 40.0%
CCATCCAAGACTTCACAAAT+GGG + chr8_1:36136135-36136154 None:intergenic 40.0%
TCCATCCAAGACTTCACAAA+TGG + chr8_1:36136136-36136155 None:intergenic 40.0%
! CTTTTCAGCATCCTCTATGT+GGG + chr8_1:36136161-36136180 None:intergenic 40.0%
! ACTTTTCAGCATCCTCTATG+TGG + chr8_1:36136162-36136181 None:intergenic 40.0%
!! GAGGATGCTGAAAAGTATCT+TGG - chr8_1:36136166-36136185 Msa1191550:intron 40.0%
CCAAACTCACCAAAAACAAC+CGG + chr8_1:36136196-36136215 None:intergenic 40.0%
TCTACAAAGAAAGGAGGTAG+TGG - chr8_1:36136295-36136314 Msa1191550:CDS 40.0%
CTACAAAGAAAGGAGGTAGT+GGG - chr8_1:36136296-36136315 Msa1191550:CDS 40.0%
TACAAAGAAAGGAGGTAGTG+GGG - chr8_1:36136297-36136316 Msa1191550:CDS 40.0%
TCCTGATGGAACAGATTACA+TGG - chr8_1:36136345-36136364 Msa1191550:CDS 40.0%
TCCATGTAATCTGTTCCATC+AGG + chr8_1:36136349-36136368 None:intergenic 40.0%
GGAACAGATTACATGGATGA+TGG - chr8_1:36136352-36136371 Msa1191550:CDS 40.0%
TGATATCCCTTCAATCCACA+AGG - chr8_1:36136416-36136435 Msa1191550:CDS 40.0%
! TTTTCTTCTTACAACCCCAG+TGG + chr8_1:36136477-36136496 None:intergenic 40.0%
CTGGGGTTGTAAGAAGAAAA+AGG - chr8_1:36136477-36136496 Msa1191550:CDS 40.0%
GTTGCAAAATGTAGTCTACG+AGG - chr8_1:36136501-36136520 Msa1191550:CDS 40.0%
AAATGTAGTCTACGAGGATG+AGG - chr8_1:36136507-36136526 Msa1191550:CDS 40.0%
TGGCTGGGTAACATAACATA+TGG - chr8_1:36134569-36134588 Msa1191550:three_prime_UTR 40.0%
ATCAAATGCAGTTGAGCTGA+AGG + chr8_1:36134664-36134683 None:intergenic 40.0%
TGGTTTAAGGAGTGAAATGG+AGG - chr8_1:36134827-36134846 Msa1191550:three_prime_UTR 40.0%
GTTGGTCATTCACTGCAAAT+TGG + chr8_1:36134887-36134906 None:intergenic 40.0%
! CAGTTGGTATGACAGTTTGT+AGG - chr8_1:36135006-36135025 Msa1191550:CDS 40.0%
GTATGACAGTTTGTAGGACT+TGG - chr8_1:36135012-36135031 Msa1191550:CDS 40.0%
TTCACTCACCACAAAATCCA+GGG + chr8_1:36135108-36135127 None:intergenic 40.0%
! GTTAACAATTGGGAGGCATA+TGG - chr8_1:36135164-36135183 Msa1191550:CDS 40.0%
CAAAGCACAGTATGTCAAGT+GGG - chr8_1:36135190-36135209 Msa1191550:CDS 40.0%
AAAGCACAGTATGTCAAGTG+GGG - chr8_1:36135191-36135210 Msa1191550:CDS 40.0%
CATCATCAGAGGTCAAGTTA+AGG + chr8_1:36135229-36135248 None:intergenic 40.0%
AGCTCCCAAGCAAAAATTGT+TGG + chr8_1:36135453-36135472 None:intergenic 40.0%
!! TGAAATCTCTGAGGTGTTGA+GGG + chr8_1:36135860-36135879 None:intergenic 40.0%
CCCAAATTCATATGCTCAAC+AGG - chr8_1:36135886-36135905 Msa1191550:intron 40.0%
TAAGTAGAAGCCATCAAGGA+AGG + chr8_1:36135996-36136015 None:intergenic 40.0%
ATTCAGGCTTACCTTGTTGA+AGG - chr8_1:36136080-36136099 Msa1191550:intron 40.0%
CCATCCAAGACTTCACAAAT+GGG + chr8_1:36136135-36136154 None:intergenic 40.0%
TCCATCCAAGACTTCACAAA+TGG + chr8_1:36136136-36136155 None:intergenic 40.0%
! CTTTTCAGCATCCTCTATGT+GGG + chr8_1:36136161-36136180 None:intergenic 40.0%
! ACTTTTCAGCATCCTCTATG+TGG + chr8_1:36136162-36136181 None:intergenic 40.0%
!! GAGGATGCTGAAAAGTATCT+TGG - chr8_1:36136166-36136185 Msa1191550:intron 40.0%
CCAAACTCACCAAAAACAAC+CGG + chr8_1:36136196-36136215 None:intergenic 40.0%
TCTACAAAGAAAGGAGGTAG+TGG - chr8_1:36136295-36136314 Msa1191550:CDS 40.0%
CTACAAAGAAAGGAGGTAGT+GGG - chr8_1:36136296-36136315 Msa1191550:CDS 40.0%
TACAAAGAAAGGAGGTAGTG+GGG - chr8_1:36136297-36136316 Msa1191550:CDS 40.0%
TCCTGATGGAACAGATTACA+TGG - chr8_1:36136345-36136364 Msa1191550:CDS 40.0%
TCCATGTAATCTGTTCCATC+AGG + chr8_1:36136349-36136368 None:intergenic 40.0%
GGAACAGATTACATGGATGA+TGG - chr8_1:36136352-36136371 Msa1191550:CDS 40.0%
TGATATCCCTTCAATCCACA+AGG - chr8_1:36136416-36136435 Msa1191550:CDS 40.0%
! TTTTCTTCTTACAACCCCAG+TGG + chr8_1:36136477-36136496 None:intergenic 40.0%
CTGGGGTTGTAAGAAGAAAA+AGG - chr8_1:36136477-36136496 Msa1191550:CDS 40.0%
GTTGCAAAATGTAGTCTACG+AGG - chr8_1:36136501-36136520 Msa1191550:CDS 40.0%
AAATGTAGTCTACGAGGATG+AGG - chr8_1:36136507-36136526 Msa1191550:CDS 40.0%
GTGAAATGGAGGAAGCTGAA+TGG - chr8_1:36134838-36134857 Msa1191550:intron 45.0%
TGGCAGATGGTGCAAAAGAA+AGG - chr8_1:36134858-36134877 Msa1191550:intron 45.0%
!! CTGGTTGATGGTATTTGCTG+CGG - chr8_1:36134935-36134954 Msa1191550:intron 45.0%
TCTCCATTGGCCATCATTGA+AGG + chr8_1:36135039-36135058 None:intergenic 45.0%
! ATTTCTGAAGGGCTCTCCAT+TGG + chr8_1:36135052-36135071 None:intergenic 45.0%
TGAAGTAGTATTCAAGGCCC+TGG - chr8_1:36135088-36135107 Msa1191550:CDS 45.0%
! ATTCAAGGCCCTGGATTTTG+TGG - chr8_1:36135097-36135116 Msa1191550:CDS 45.0%
CTTCACTCACCACAAAATCC+AGG + chr8_1:36135109-36135128 None:intergenic 45.0%
! AACAATTGGGAGGCATATGG+TGG - chr8_1:36135167-36135186 Msa1191550:CDS 45.0%
GCAAAGCACAGTATGTCAAG+TGG - chr8_1:36135189-36135208 Msa1191550:CDS 45.0%
TTCTCACATCCAACTCTCAG+AGG - chr8_1:36135254-36135273 Msa1191550:CDS 45.0%
! TTGTAGTAGCCTCTGAGAGT+TGG + chr8_1:36135266-36135285 None:intergenic 45.0%
AACTCTCAGAGGCTACTACA+AGG - chr8_1:36135265-36135284 Msa1191550:CDS 45.0%
CTACTACAAGGACCATGTCA+AGG - chr8_1:36135277-36135296 Msa1191550:CDS 45.0%
GCTAGGAACTTACCTTGACA+TGG + chr8_1:36135292-36135311 None:intergenic 45.0%
TACCTGTAACGTATCACCAG+AGG + chr8_1:36135505-36135524 None:intergenic 45.0%
CCAATCTCCAGTAGGTGTTT+CGG + chr8_1:36135818-36135837 None:intergenic 45.0%
AGGGGCCATAAAATCCTTCT+AGG + chr8_1:36135841-36135860 None:intergenic 45.0%
!! GAAATCTCTGAGGTGTTGAG+GGG + chr8_1:36135859-36135878 None:intergenic 45.0%
!! CTGAAATCTCTGAGGTGTTG+AGG + chr8_1:36135861-36135880 None:intergenic 45.0%
GGGTTGAACTGAAATCTCTG+AGG + chr8_1:36135869-36135888 None:intergenic 45.0%
ATCAGAAACCACCAGGTTCT+AGG - chr8_1:36135923-36135942 Msa1191550:intron 45.0%
AAGGAACCTTACCAAGAGTC+TGG + chr8_1:36135977-36135996 None:intergenic 45.0%
TGGTAAGGTTCCTTCCTTGA+TGG - chr8_1:36135983-36136002 Msa1191550:CDS 45.0%
CCCATTTGTGAAGTCTTGGA+TGG - chr8_1:36136132-36136151 Msa1191550:intron 45.0%
!! CTTGGAATGCCGGTTGTTTT+TGG - chr8_1:36136184-36136203 Msa1191550:intron 45.0%
!!! CCGGTTGTTTTTGGTGAGTT+TGG - chr8_1:36136193-36136212 Msa1191550:intron 45.0%
GGTGTATCTGCAAAAGATCC+TGG - chr8_1:36136214-36136233 Msa1191550:CDS 45.0%
CAGGAAAGAACTGCCACAAA+AGG + chr8_1:36136330-36136349 None:intergenic 45.0%
TTGTGGCAGTTCTTTCCTGA+TGG - chr8_1:36136331-36136350 Msa1191550:CDS 45.0%
AGAGCAGAGGGAGTTGAATA+GGG + chr8_1:36136446-36136465 None:intergenic 45.0%
GTGAAATGGAGGAAGCTGAA+TGG - chr8_1:36134838-36134857 Msa1191550:intron 45.0%
TGGCAGATGGTGCAAAAGAA+AGG - chr8_1:36134858-36134877 Msa1191550:intron 45.0%
!! CTGGTTGATGGTATTTGCTG+CGG - chr8_1:36134935-36134954 Msa1191550:intron 45.0%
TCTCCATTGGCCATCATTGA+AGG + chr8_1:36135039-36135058 None:intergenic 45.0%
! ATTTCTGAAGGGCTCTCCAT+TGG + chr8_1:36135052-36135071 None:intergenic 45.0%
TGAAGTAGTATTCAAGGCCC+TGG - chr8_1:36135088-36135107 Msa1191550:CDS 45.0%
! ATTCAAGGCCCTGGATTTTG+TGG - chr8_1:36135097-36135116 Msa1191550:CDS 45.0%
CTTCACTCACCACAAAATCC+AGG + chr8_1:36135109-36135128 None:intergenic 45.0%
! AACAATTGGGAGGCATATGG+TGG - chr8_1:36135167-36135186 Msa1191550:CDS 45.0%
GCAAAGCACAGTATGTCAAG+TGG - chr8_1:36135189-36135208 Msa1191550:CDS 45.0%
TTCTCACATCCAACTCTCAG+AGG - chr8_1:36135254-36135273 Msa1191550:CDS 45.0%
! TTGTAGTAGCCTCTGAGAGT+TGG + chr8_1:36135266-36135285 None:intergenic 45.0%
AACTCTCAGAGGCTACTACA+AGG - chr8_1:36135265-36135284 Msa1191550:CDS 45.0%
CTACTACAAGGACCATGTCA+AGG - chr8_1:36135277-36135296 Msa1191550:CDS 45.0%
GCTAGGAACTTACCTTGACA+TGG + chr8_1:36135292-36135311 None:intergenic 45.0%
TACCTGTAACGTATCACCAG+AGG + chr8_1:36135505-36135524 None:intergenic 45.0%
CCAATCTCCAGTAGGTGTTT+CGG + chr8_1:36135818-36135837 None:intergenic 45.0%
AGGGGCCATAAAATCCTTCT+AGG + chr8_1:36135841-36135860 None:intergenic 45.0%
!! GAAATCTCTGAGGTGTTGAG+GGG + chr8_1:36135859-36135878 None:intergenic 45.0%
!! CTGAAATCTCTGAGGTGTTG+AGG + chr8_1:36135861-36135880 None:intergenic 45.0%
GGGTTGAACTGAAATCTCTG+AGG + chr8_1:36135869-36135888 None:intergenic 45.0%
ATCAGAAACCACCAGGTTCT+AGG - chr8_1:36135923-36135942 Msa1191550:intron 45.0%
AAGGAACCTTACCAAGAGTC+TGG + chr8_1:36135977-36135996 None:intergenic 45.0%
TGGTAAGGTTCCTTCCTTGA+TGG - chr8_1:36135983-36136002 Msa1191550:CDS 45.0%
CCCATTTGTGAAGTCTTGGA+TGG - chr8_1:36136132-36136151 Msa1191550:intron 45.0%
!! CTTGGAATGCCGGTTGTTTT+TGG - chr8_1:36136184-36136203 Msa1191550:intron 45.0%
!!! CCGGTTGTTTTTGGTGAGTT+TGG - chr8_1:36136193-36136212 Msa1191550:intron 45.0%
GGTGTATCTGCAAAAGATCC+TGG - chr8_1:36136214-36136233 Msa1191550:CDS 45.0%
CAGGAAAGAACTGCCACAAA+AGG + chr8_1:36136330-36136349 None:intergenic 45.0%
TTGTGGCAGTTCTTTCCTGA+TGG - chr8_1:36136331-36136350 Msa1191550:CDS 45.0%
AGAGCAGAGGGAGTTGAATA+GGG + chr8_1:36136446-36136465 None:intergenic 45.0%
AGGACTTGGGCCTTCAATGA+TGG - chr8_1:36135026-36135045 Msa1191550:CDS 50.0%
CTCCTCTGGTGATACGTTAC+AGG - chr8_1:36135500-36135519 Msa1191550:intron 50.0%
CGTTGATCCGAAACACCTAC+TGG - chr8_1:36135808-36135827 Msa1191550:intron 50.0%
CCGAAACACCTACTGGAGAT+TGG - chr8_1:36135815-36135834 Msa1191550:intron 50.0%
CTTCTAGGCCAATCTCCAGT+AGG + chr8_1:36135826-36135845 None:intergenic 50.0%
!! CTACTGGAGATTGGCCTAGA+AGG - chr8_1:36135824-36135843 Msa1191550:intron 50.0%
CAAAGTCGACACCTAGAACC+TGG + chr8_1:36135937-36135956 None:intergenic 50.0%
TTGGATGGAAGCCCACATAG+AGG - chr8_1:36136147-36136166 Msa1191550:intron 50.0%
! GGCAAGCCTTGTGGATTGAA+GGG + chr8_1:36136425-36136444 None:intergenic 50.0%
GTTGAATAGGGCAAGCCTTG+TGG + chr8_1:36136434-36136453 None:intergenic 50.0%
CAGAGCAGAGGGAGTTGAAT+AGG + chr8_1:36136447-36136466 None:intergenic 50.0%
AGGACTTGGGCCTTCAATGA+TGG - chr8_1:36135026-36135045 Msa1191550:CDS 50.0%
CTCCTCTGGTGATACGTTAC+AGG - chr8_1:36135500-36135519 Msa1191550:intron 50.0%
CGTTGATCCGAAACACCTAC+TGG - chr8_1:36135808-36135827 Msa1191550:intron 50.0%
CCGAAACACCTACTGGAGAT+TGG - chr8_1:36135815-36135834 Msa1191550:intron 50.0%
CTTCTAGGCCAATCTCCAGT+AGG + chr8_1:36135826-36135845 None:intergenic 50.0%
!! CTACTGGAGATTGGCCTAGA+AGG - chr8_1:36135824-36135843 Msa1191550:intron 50.0%
CAAAGTCGACACCTAGAACC+TGG + chr8_1:36135937-36135956 None:intergenic 50.0%
TTGGATGGAAGCCCACATAG+AGG - chr8_1:36136147-36136166 Msa1191550:intron 50.0%
! GGCAAGCCTTGTGGATTGAA+GGG + chr8_1:36136425-36136444 None:intergenic 50.0%
GTTGAATAGGGCAAGCCTTG+TGG + chr8_1:36136434-36136453 None:intergenic 50.0%
CAGAGCAGAGGGAGTTGAAT+AGG + chr8_1:36136447-36136466 None:intergenic 50.0%
GGAGGAAGCTGAATGGCAGA+TGG - chr8_1:36134845-36134864 Msa1191550:intron 55.0%
GGACGAGTCGACAAGAGGAA+GGG - chr8_1:36134956-36134975 Msa1191550:intron 55.0%
GACAAGAGGAAGGGTCACTC+AGG - chr8_1:36134965-36134984 Msa1191550:CDS 55.0%
GGGCCTTCAATGATGGCCAA+TGG - chr8_1:36135033-36135052 Msa1191550:CDS 55.0%
CGTATCACCAGAGGAGTCAG+AGG + chr8_1:36135496-36135515 None:intergenic 55.0%
AGTCGACACCTAGAACCTGG+TGG + chr8_1:36135934-36135953 None:intergenic 55.0%
!! AAGAAAGGAGGTAGTGGGGC+TGG - chr8_1:36136301-36136320 Msa1191550:CDS 55.0%
! GGGCAAGCCTTGTGGATTGA+AGG + chr8_1:36136426-36136445 None:intergenic 55.0%
GTGGCATCTCTCAGAGCAGA+GGG + chr8_1:36136458-36136477 None:intergenic 55.0%
AGTGGCATCTCTCAGAGCAG+AGG + chr8_1:36136459-36136478 None:intergenic 55.0%
!! TCTGCTCTGAGAGATGCCAC+TGG - chr8_1:36136458-36136477 Msa1191550:CDS 55.0%
!! CTGCTCTGAGAGATGCCACT+GGG - chr8_1:36136459-36136478 Msa1191550:CDS 55.0%
!! TGCTCTGAGAGATGCCACTG+GGG - chr8_1:36136460-36136479 Msa1191550:CDS 55.0%
GGAGGAAGCTGAATGGCAGA+TGG - chr8_1:36134845-36134864 Msa1191550:intron 55.0%
GGACGAGTCGACAAGAGGAA+GGG - chr8_1:36134956-36134975 Msa1191550:intron 55.0%
GACAAGAGGAAGGGTCACTC+AGG - chr8_1:36134965-36134984 Msa1191550:CDS 55.0%
GGGCCTTCAATGATGGCCAA+TGG - chr8_1:36135033-36135052 Msa1191550:CDS 55.0%
CGTATCACCAGAGGAGTCAG+AGG + chr8_1:36135496-36135515 None:intergenic 55.0%
AGTCGACACCTAGAACCTGG+TGG + chr8_1:36135934-36135953 None:intergenic 55.0%
!! AAGAAAGGAGGTAGTGGGGC+TGG - chr8_1:36136301-36136320 Msa1191550:CDS 55.0%
! GGGCAAGCCTTGTGGATTGA+AGG + chr8_1:36136426-36136445 None:intergenic 55.0%
GTGGCATCTCTCAGAGCAGA+GGG + chr8_1:36136458-36136477 None:intergenic 55.0%
AGTGGCATCTCTCAGAGCAG+AGG + chr8_1:36136459-36136478 None:intergenic 55.0%
!! TCTGCTCTGAGAGATGCCAC+TGG - chr8_1:36136458-36136477 Msa1191550:CDS 55.0%
!! CTGCTCTGAGAGATGCCACT+GGG - chr8_1:36136459-36136478 Msa1191550:CDS 55.0%
!! TGCTCTGAGAGATGCCACTG+GGG - chr8_1:36136460-36136479 Msa1191550:CDS 55.0%
CGGACGAGTCGACAAGAGGA+AGG - chr8_1:36134955-36134974 Msa1191550:intron 60.0%
GTCAAGTGGGGCAATGCTGC+TGG - chr8_1:36135203-36135222 Msa1191550:CDS 60.0%
! GAGGAGTCAGAGGTGCATCG+AGG + chr8_1:36135486-36135505 None:intergenic 60.0%
CGATGCACCTCTGACTCCTC+TGG - chr8_1:36135486-36135505 Msa1191550:intron 60.0%
! GTGGGGCTGGAAGCCTTTTG+TGG - chr8_1:36136314-36136333 Msa1191550:CDS 60.0%
CGGACGAGTCGACAAGAGGA+AGG - chr8_1:36134955-36134974 Msa1191550:intron 60.0%
GTCAAGTGGGGCAATGCTGC+TGG - chr8_1:36135203-36135222 Msa1191550:CDS 60.0%
! GAGGAGTCAGAGGTGCATCG+AGG + chr8_1:36135486-36135505 None:intergenic 60.0%
CGATGCACCTCTGACTCCTC+TGG - chr8_1:36135486-36135505 Msa1191550:intron 60.0%
! GTGGGGCTGGAAGCCTTTTG+TGG - chr8_1:36136314-36136333 Msa1191550:CDS 60.0%
GCTGCGGACGAGTCGACAAG+AGG - chr8_1:36134951-36134970 Msa1191550:intron 65.0%
GCTGCGGACGAGTCGACAAG+AGG - chr8_1:36134951-36134970 Msa1191550:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 36134557 36136940 36134557 ID=Msa1191550;Name=Msa1191550
chr8_1 mRNA 36134557 36136940 36134557 ID=Msa1191550-mRNA-1;Parent=Msa1191550;Name=Msa1191550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=31|1|1|1|0.8|0.66|6|306|462
chr8_1 exon 36134557 36134856 36134557 ID=Msa1191550-mRNA-1:exon:11947;Parent=Msa1191550-mRNA-1
chr8_1 exon 36134957 36135395 36134957 ID=Msa1191550-mRNA-1:exon:11946;Parent=Msa1191550-mRNA-1
chr8_1 exon 36135513 36135724 36135513 ID=Msa1191550-mRNA-1:exon:11945;Parent=Msa1191550-mRNA-1
chr8_1 exon 36135976 36136098 36135976 ID=Msa1191550-mRNA-1:exon:11944;Parent=Msa1191550-mRNA-1
chr8_1 exon 36136199 36136661 36136199 ID=Msa1191550-mRNA-1:exon:11943;Parent=Msa1191550-mRNA-1
chr8_1 exon 36136752 36136940 36136752 ID=Msa1191550-mRNA-1:exon:11942;Parent=Msa1191550-mRNA-1
chr8_1 five_prime_UTR 36136910 36136940 36136910 ID=Msa1191550-mRNA-1:five_prime_utr;Parent=Msa1191550-mRNA-1
chr8_1 CDS 36136752 36136909 36136752 ID=Msa1191550-mRNA-1:cds;Parent=Msa1191550-mRNA-1
chr8_1 CDS 36136199 36136661 36136199 ID=Msa1191550-mRNA-1:cds;Parent=Msa1191550-mRNA-1
chr8_1 CDS 36135976 36136098 36135976 ID=Msa1191550-mRNA-1:cds;Parent=Msa1191550-mRNA-1
chr8_1 CDS 36135513 36135724 36135513 ID=Msa1191550-mRNA-1:cds;Parent=Msa1191550-mRNA-1
chr8_1 CDS 36134963 36135395 36134963 ID=Msa1191550-mRNA-1:cds;Parent=Msa1191550-mRNA-1
chr8_1 three_prime_UTR 36134957 36134962 36134957 ID=Msa1191550-mRNA-1:three_prime_utr;Parent=Msa1191550-mRNA-1
chr8_1 three_prime_UTR 36134557 36134856 36134557 ID=Msa1191550-mRNA-1:three_prime_utr;Parent=Msa1191550-mRNA-1
Gene Sequence

>Msa1191550

ATGGAAGCAATATTCAAGAGATTCCAATTATGTGTTATTTCCTTTCTCATTTTTCTCACTATTCTTACTCAAACCTTCAGCTCAACTGCATTTGATGACACTGAATATGAAGATTGGGAAAGCAATATTCATATACCAAATTCCATCTTAACTTATGGGAGTGAAATGGAGGAAGCTGAATGGCAGATGGTGCAAAAGAAAGGAAACCAATTTGCAGTGAATGACCAACCTTTCTATGTAAATGGATTCAACACTTACTGGTTGATGGTATTTGCTGCGGACGAGTCGACAAGAGGAAGGGTCACTCAGGTGTTCAAACATGCATTCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGAGAGCCCTTCAGAAATCACCATCACTTTATGATGAAGTAGTATTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAATACAGAATCAGACTCATATTATCATTGGTTAACAATTGGGAGGCATATGGTGGCAAAGCACAGTATGTCAAGTGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTTTTCTCACATCCAACTCTCAGAGGCTACTACAAGGACCATGTCAAGACTGTGCTCAATAGAGTTAACACACTCACAAATATCACTTATAAGGAAGATCCAACAATTTTTGCTTGGGAGCTAATGAATGAGCCTCGATGCACCTCTGACTCCTCTGGTGATACGTTACAGGAATGGATAAAAGAGATGGCATTCTATGTTAAGAGCGTTGATCCGAAACACCTACTGGAGATTGGCCTAGAAGGATTTTATGGCCCCTCAACACCTCAGAGATTTCAGTTCAACCCAAATTCATATGCTCAACAGGTTGGAACTGATTTTATCAGAAACCACCAGGTTCTAGGTGTCGACTTTGCTTCTGCTCATATATATCCAGACTCTTGGATTTCACAATCAGTTGCTGATAGCCATATCCCATTTGTGAAGTCTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCGGTTGTTTTTGGTGAGTTTGGTGTATCTGCAAAAGATCCTGGTTATAATTCAACATATAGAGATACATTTATAAATACTGTGTACAAGACAATTCTAAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTTTGTGGCAGTTCTTTCCTGATGGAACAGATTACATGGATGATGGTTATGCAATTGTTCTCTCAAAAGCTCCTTCTATTTCAAGCATGATATCCCTTCAATCCACAAGGCTTGCCCTATTCAACTCCCTCTGCTCTGAGAGATGCCACTGGGGTTGTAAGAAGAAAAAGGTGTTGCAAAATGTAGTCTACGAGGATGAGGAGTAG

Protein sequence

>Msa1191550

MEAIFKRFQLCVISFLIFLTILTQTFSSTAFDDTEYEDWESNIHIPNSILTYGSEMEEAEWQMVQKKGNQFAVNDQPFYVNGFNTYWLMVFAADESTRGRVTQVFKHAFSVGMTVCRTWAFNDGQWRALQKSPSLYDEVVFKALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRGYYKDHVKTVLNRVNTLTNITYKEDPTIFAWELMNEPRCTSDSSGDTLQEWIKEMAFYVKSVDPKHLLEIGLEGFYGPSTPQRFQFNPNSYAQQVGTDFIRNHQVLGVDFASAHIYPDSWISQSVADSHIPFVKSWMEAHIEDAEKYLGMPVVFGEFGVSAKDPGYNSTYRDTFINTVYKTILNSTKKGGSGAGSLLWQFFPDGTDYMDDGYAIVLSKAPSISSMISLQSTRLALFNSLCSERCHWGCKKKKVLQNVVYEDEE*