Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270840 | KEH17803.1 | 96.916 | 454 | 14 | 0 | 1 | 454 | 12 | 465 | 0.0 | 926 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270840 | sp|Q9LZV3|MAN6_ARATH | 70.657 | 426 | 118 | 2 | 30 | 453 | 27 | 447 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270840 | A0A072TLS6 | 96.916 | 454 | 14 | 0 | 1 | 454 | 12 | 465 | 0.0 | 926 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa1270840 | 0.814180 | 1.756896e-51 | -8.615850e-47 |
| Msa0017750 | Msa1270840 | 0.805739 | 1.154270e-49 | -8.615850e-47 |
| Msa0036550 | Msa1270840 | 0.808374 | 3.196234e-50 | -8.615850e-47 |
| Msa0036860 | Msa1270840 | 0.804841 | 1.779995e-49 | -8.615850e-47 |
| Msa0039640 | Msa1270840 | 0.854863 | 9.272574e-62 | -8.615850e-47 |
| Msa0053000 | Msa1270840 | 0.826155 | 3.168192e-54 | -8.615850e-47 |
| Msa0058230 | Msa1270840 | 0.802678 | 5.005054e-49 | -8.615850e-47 |
| Msa0058370 | Msa1270840 | 0.809390 | 1.937573e-50 | -8.615850e-47 |
| Msa0081080 | Msa1270840 | 0.813224 | 2.852470e-51 | -8.615850e-47 |
| Msa0087280 | Msa1270840 | 0.854880 | 9.163991e-62 | -8.615850e-47 |
| Msa0098050 | Msa1270840 | 0.811193 | 7.912056e-51 | -8.615850e-47 |
| Msa0104570 | Msa1270840 | 0.834286 | 3.272969e-56 | -8.615850e-47 |
| Msa0626980 | Msa1270840 | 0.811868 | 5.645246e-51 | -8.615850e-47 |
| Msa0627360 | Msa1270840 | 0.814267 | 1.680887e-51 | -8.615850e-47 |
| Msa0673940 | Msa1270840 | 0.817006 | 4.123344e-52 | -8.615850e-47 |
| Msa0716700 | Msa1270840 | 0.818737 | 1.676790e-52 | -8.615850e-47 |
| Msa0764770 | Msa1270840 | 0.844965 | 5.450355e-59 | -8.615850e-47 |
| Msa0772420 | Msa1270840 | 0.824681 | 7.073863e-54 | -8.615850e-47 |
| Msa0799170 | Msa1270840 | 0.873167 | 1.813017e-67 | -8.615850e-47 |
| Msa0837610 | Msa1270840 | 0.863721 | 2.033131e-64 | -8.615850e-47 |
| Msa0130710 | Msa1270840 | 0.800349 | 1.502817e-48 | -8.615850e-47 |
| Msa0133920 | Msa1270840 | 0.860457 | 2.038044e-63 | -8.615850e-47 |
| Msa0140640 | Msa1270840 | 0.802614 | 5.159990e-49 | -8.615850e-47 |
| Msa0145850 | Msa1270840 | 0.821870 | 3.208166e-53 | -8.615850e-47 |
| Msa0150590 | Msa1270840 | 0.842345 | 2.736935e-58 | -8.615850e-47 |
| Msa0154760 | Msa1270840 | 0.862355 | 5.373596e-64 | -8.615850e-47 |
| Msa0176600 | Msa1270840 | 0.817180 | 3.769938e-52 | -8.615850e-47 |
| Msa0228680 | Msa1270840 | 0.806863 | 6.690844e-50 | -8.615850e-47 |
| Msa1227760 | Msa1270840 | 0.969452 | 3.830926e-130 | -8.615850e-47 |
| Msa1255710 | Msa1270840 | 0.801429 | 9.042277e-49 | -8.615850e-47 |
| Msa1257740 | Msa1270840 | 0.816651 | 4.954973e-52 | -8.615850e-47 |
| Msa1270840 | Msa1296860 | 0.804284 | 2.325556e-49 | -8.615850e-47 |
| Msa1270840 | Msa1307990 | 0.871357 | 7.266980e-67 | -8.615850e-47 |
| Msa1270840 | Msa1329140 | 0.805448 | 1.328472e-49 | -8.615850e-47 |
| Msa1270840 | Msa1329190 | 0.820049 | 8.419995e-53 | -8.615850e-47 |
| Msa1270840 | Msa1329220 | 0.824251 | 8.933417e-54 | -8.615850e-47 |
| Msa1270840 | Msa1363690 | 0.823274 | 1.512656e-53 | -8.615850e-47 |
| Msa1270840 | Msa1369030 | 0.842693 | 2.213274e-58 | -8.615850e-47 |
| Msa1270840 | Msa1369410 | 0.993123 | 1.314763e-197 | -8.615850e-47 |
| Msa1270840 | Msa1395720 | 0.801314 | 9.544115e-49 | -8.615850e-47 |
| Msa1270840 | Msa1396550 | 0.825265 | 5.149544e-54 | -8.615850e-47 |
| Msa1270840 | Msa1429010 | 0.832248 | 1.053511e-55 | -8.615850e-47 |
| Msa1270840 | Msa1432960 | 0.806298 | 8.804035e-50 | -8.615850e-47 |
| Msa1033420 | Msa1270840 | 0.800306 | 1.533553e-48 | -8.615850e-47 |
| Msa1060300 | Msa1270840 | 0.819154 | 1.348030e-52 | -8.615850e-47 |
| Msa1105540 | Msa1270840 | 0.814012 | 1.912976e-51 | -8.615850e-47 |
| Msa1105580 | Msa1270840 | 0.826279 | 2.960462e-54 | -8.615850e-47 |
| Msa0316630 | Msa1270840 | 0.801789 | 7.628014e-49 | -8.615850e-47 |
| Msa0336520 | Msa1270840 | 0.812396 | 4.330388e-51 | -8.615850e-47 |
| Msa1188930 | Msa1270840 | 0.801588 | 8.389881e-49 | -8.615850e-47 |
| Msa1191550 | Msa1270840 | 0.990757 | 3.567330e-184 | -8.615850e-47 |
| Msa0518680 | Msa1270840 | 0.811057 | 8.469770e-51 | -8.615850e-47 |
| Msa0530660 | Msa1270840 | 0.812848 | 3.448982e-51 | -8.615850e-47 |
| Msa0548100 | Msa1270840 | 0.812406 | 4.307429e-51 | -8.615850e-47 |
| Msa0587180 | Msa1270840 | 0.814947 | 1.188249e-51 | -8.615850e-47 |
| Msa0844400 | Msa1270840 | 0.801866 | 7.354455e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270840 | MtrunA17_Chr8g0334501 | 97.494 | 439 | 10 | 1 | 16 | 454 | 24 | 461 | 0.0 | 897 |
| Msa1270840 | MtrunA17_Chr7g0245051 | 77.955 | 440 | 91 | 2 | 18 | 453 | 20 | 457 | 0.0 | 739 |
| Msa1270840 | MtrunA17_Chr7g0245101 | 76.818 | 440 | 97 | 2 | 19 | 453 | 19 | 458 | 0.0 | 726 |
| Msa1270840 | MtrunA17_Chr4g0020521 | 51.187 | 379 | 182 | 1 | 56 | 434 | 35 | 410 | 5.55e-148 | 427 |
| Msa1270840 | MtrunA17_Chr5g0404601 | 51.938 | 387 | 183 | 2 | 48 | 433 | 24 | 408 | 6.79e-145 | 421 |
| Msa1270840 | MtrunA17_Chr1g0193531 | 52.703 | 370 | 172 | 2 | 56 | 425 | 30 | 396 | 5.25e-143 | 414 |
| Msa1270840 | MtrunA17_Chr1g0193611 | 51.081 | 370 | 179 | 1 | 56 | 425 | 33 | 400 | 7.54e-141 | 409 |
| Msa1270840 | MtrunA17_Chr7g0271511 | 49.618 | 393 | 185 | 3 | 33 | 425 | 47 | 426 | 1.50e-140 | 409 |
| Msa1270840 | MtrunA17_Chr1g0193551 | 52.022 | 371 | 174 | 3 | 55 | 425 | 35 | 401 | 1.81e-139 | 405 |
| Msa1270840 | MtrunA17_Chr3g0141751 | 49.602 | 377 | 182 | 3 | 50 | 424 | 21 | 391 | 4.13e-139 | 405 |
| Msa1270840 | MtrunA17_Chr1g0193601 | 51.081 | 370 | 179 | 1 | 56 | 425 | 33 | 400 | 2.81e-138 | 402 |
| Msa1270840 | MtrunA17_Chr4g0040121 | 47.959 | 392 | 199 | 3 | 42 | 428 | 23 | 414 | 2.49e-136 | 399 |
| Msa1270840 | MtrunA17_Chr2g0324441 | 46.579 | 380 | 200 | 2 | 49 | 425 | 34 | 413 | 1.98e-130 | 384 |
| Msa1270840 | MtrunA17_Chr1g0193541 | 46.237 | 372 | 161 | 4 | 56 | 425 | 32 | 366 | 7.83e-114 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270840 | AT5G01930.1 | 70.657 | 426 | 118 | 2 | 30 | 453 | 27 | 447 | 0.0 | 652 |
| Msa1270840 | AT4G28320.1 | 47.848 | 395 | 196 | 2 | 50 | 434 | 36 | 430 | 2.60e-138 | 404 |
| Msa1270840 | AT2G20680.1 | 49.337 | 377 | 190 | 1 | 50 | 425 | 37 | 413 | 1.02e-135 | 397 |
| Msa1270840 | AT5G66460.1 | 49.340 | 379 | 189 | 1 | 55 | 433 | 31 | 406 | 6.07e-135 | 395 |
| Msa1270840 | AT3G10890.1 | 48.257 | 373 | 191 | 2 | 56 | 427 | 32 | 403 | 2.70e-133 | 390 |
| Msa1270840 | AT3G10900.1 | 48.930 | 374 | 188 | 3 | 56 | 427 | 30 | 402 | 1.47e-130 | 384 |
| Msa1270840 | AT1G02310.1 | 47.326 | 374 | 186 | 6 | 56 | 424 | 30 | 397 | 1.07e-121 | 361 |
| Msa1270840 | AT1G02310.2 | 47.326 | 374 | 186 | 6 | 56 | 424 | 50 | 417 | 1.66e-121 | 361 |
| Msa1270840 | AT3G30540.1 | 44.012 | 334 | 148 | 3 | 56 | 388 | 30 | 325 | 3.78e-95 | 290 |
Find 123 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGAGCATATGAATT+TGG | 0.114525 | 8_3:-4192210 | None:intergenic |
| GACCAACCTTTCTATGTAAA+TGG | 0.163607 | 8_3:+4191223 | Msa1270840:CDS |
| CCAAATTCCATCTTAACTTA+TGG | 0.180101 | 8_3:+4191046 | Msa1270840:CDS |
| CCATAAGTTAAGATGGAATT+TGG | 0.274969 | 8_3:-4191046 | None:intergenic |
| TAAATGGATTCAACACTTAC+TGG | 0.284522 | 8_3:+4191239 | Msa1270840:CDS |
| CAGAGCAGAGGGAGTTGAAT+AGG | 0.306615 | 8_3:-4192767 | None:intergenic |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 8_3:+4191823 | Msa1270840:CDS |
| GTTGGTCATTCACTGCAAAT+TGG | 0.331406 | 8_3:-4191207 | None:intergenic |
| CAAATTCCATCTTAACTTAT+GGG | 0.334308 | 8_3:+4191047 | Msa1270840:CDS |
| TATTATCATTGGTTAACAAT+TGG | 0.335350 | 8_3:+4191476 | Msa1270840:CDS |
| ATCAGAAACCACCAGGTTCT+AGG | 0.336789 | 8_3:+4192246 | Msa1270840:CDS |
| CCCAAATTCATATGCTCAAC+AGG | 0.348303 | 8_3:+4192209 | Msa1270840:CDS |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 8_3:+4191745 | Msa1270840:CDS |
| TTGAATCCATTTACATAGAA+AGG | 0.367924 | 8_3:-4191229 | None:intergenic |
| ATTATCATTGGTTAACAATT+GGG | 0.370572 | 8_3:+4191477 | Msa1270840:CDS |
| GTATGACAGTTTGTAGGACT+TGG | 0.375713 | 8_3:+4191335 | Msa1270840:CDS |
| AAGACTTCACAAATGGGATA+TGG | 0.386757 | 8_3:-4192449 | None:intergenic |
| ATTCAACACTTACTGGTTGA+TGG | 0.393983 | 8_3:+4191246 | Msa1270840:CDS |
| CTACTGGAGATTGGCCTAGA+AGG | 0.395563 | 8_3:+4192147 | Msa1270840:CDS |
| CTGGGGTTGTAAGAAGAAAA+AGG | 0.407765 | 8_3:+4192800 | Msa1270840:CDS |
| CAGTTGGTATGACAGTTTGT+AGG | 0.408046 | 8_3:+4191329 | Msa1270840:CDS |
| TTGTGGCAGTTCTTTCCTGA+TGG | 0.418500 | 8_3:+4192654 | Msa1270840:CDS |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 8_3:+4191526 | Msa1270840:CDS |
| AATCAGACTCATATTATCAT+TGG | 0.423314 | 8_3:+4191465 | Msa1270840:CDS |
| TCTCCATTGGCCATCATTGA+AGG | 0.427709 | 8_3:-4191359 | None:intergenic |
| TCCATCCAAGACTTCACAAA+TGG | 0.428524 | 8_3:-4192456 | None:intergenic |
| CCAATCTCCAGTAGGTGTTT+CGG | 0.433449 | 8_3:-4192138 | None:intergenic |
| AGGGGCCATAAAATCCTTCT+AGG | 0.439788 | 8_3:-4192161 | None:intergenic |
| AAGGAACCTTACCAAGAGTC+TGG | 0.441773 | 8_3:-4192297 | None:intergenic |
| CAACACAGAGACAAATAAAC+AGG | 0.442797 | 8_3:+4190435 | Msa1270840:CDS |
| ATTTCTGAAGGGCTCTCCAT+TGG | 0.442818 | 8_3:-4191372 | None:intergenic |
| GAGGATGCTGAAAAGTATCT+TGG | 0.444822 | 8_3:+4192489 | Msa1270840:CDS |
| ATGACACTGAATATGAAGAT+TGG | 0.449152 | 8_3:+4191005 | Msa1270840:CDS |
| TTATGATGAAGTAGTATTCA+AGG | 0.449801 | 8_3:+4191405 | Msa1270840:CDS |
| AGAGCAGAGGGAGTTGAATA+GGG | 0.450240 | 8_3:-4192766 | None:intergenic |
| CTGCTCTGAGAGATGCCACT+GGG | 0.450365 | 8_3:+4192782 | Msa1270840:CDS |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 8_3:+4191487 | Msa1270840:CDS |
| CCTGTTGAGCATATGAATTT+GGG | 0.458492 | 8_3:-4192209 | None:intergenic |
| CCGAAACACCTACTGGAGAT+TGG | 0.462360 | 8_3:+4192138 | Msa1270840:CDS |
| TGAAATCTCTGAGGTGTTGA+GGG | 0.462829 | 8_3:-4192180 | None:intergenic |
| ATATCCCATTTGTGAAGTCT+TGG | 0.463092 | 8_3:+4192451 | Msa1270840:CDS |
| AGTTAAGTTGGAATAAATAC+AGG | 0.470036 | 8_3:+4192856 | Msa1270840:exon |
| GATATCATGCTTGAAATAGA+AGG | 0.473952 | 8_3:-4192723 | None:intergenic |
| AGGATGAGGAGTAGTTAAGT+TGG | 0.477048 | 8_3:+4192844 | Msa1270840:exon |
| GGGCAAGCCTTGTGGATTGA+AGG | 0.483170 | 8_3:-4192746 | None:intergenic |
| AGGACTTGGGCCTTCAATGA+TGG | 0.484180 | 8_3:+4191349 | Msa1270840:CDS |
| ATCCATTTACATAGAAAGGT+TGG | 0.484246 | 8_3:-4191225 | None:intergenic |
| TCTGCTCTGAGAGATGCCAC+TGG | 0.484589 | 8_3:+4192781 | Msa1270840:CDS |
| ATTCTAAACTCTACAAAGAA+AGG | 0.486329 | 8_3:+4192609 | Msa1270840:CDS |
| TCCATGTAATCTGTTCCATC+AGG | 0.489401 | 8_3:-4192669 | None:intergenic |
| CGTTGATCCGAAACACCTAC+TGG | 0.492407 | 8_3:+4192131 | Msa1270840:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 8_3:+4191809 | Msa1270840:CDS |
| AAGAAAGGAGGTAGTGGGGC+TGG | 0.494489 | 8_3:+4192624 | Msa1270840:CDS |
| GGTGTATCTGCAAAAGATCC+TGG | 0.494622 | 8_3:+4192537 | Msa1270840:CDS |
| CTCATATATATCCAGACTCT+TGG | 0.494942 | 8_3:+4192286 | Msa1270840:CDS |
| TACGTACCCATAAGTTAAGA+TGG | 0.495593 | 8_3:-4191053 | None:intergenic |
| GTTTATTTGTCTCTGTGTTG+TGG | 0.498510 | 8_3:-4190432 | None:intergenic |
| CTTCACTCACCACAAAATCC+AGG | 0.501627 | 8_3:-4191429 | None:intergenic |
| CAGGAAAGAACTGCCACAAA+AGG | 0.501942 | 8_3:-4192650 | None:intergenic |
| CTATATGTTGAATTATAACC+AGG | 0.502559 | 8_3:-4192555 | None:intergenic |
| TATGACAGTTTGTAGGACTT+GGG | 0.504511 | 8_3:+4191336 | Msa1270840:CDS |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 8_3:+4191181 | Msa1270840:CDS |
| TGAAGTAGTATTCAAGGCCC+TGG | 0.508682 | 8_3:+4191411 | Msa1270840:CDS |
| GTGGCCATGTAGCCAGCTGC+AGG | 0.509593 | 8_3:-4190413 | None:intergenic |
| CCCATTTGTGAAGTCTTGGA+TGG | 0.515184 | 8_3:+4192455 | Msa1270840:CDS |
| ATCACCTGCAGCTGGCTACA+TGG | 0.517739 | 8_3:+4190409 | Msa1270840:CDS |
| TTCAAACATGCATTCTCAGT+TGG | 0.518806 | 8_3:+4191313 | Msa1270840:CDS |
| TTGTAGTAGCCTCTGAGAGT+TGG | 0.519117 | 8_3:-4191586 | None:intergenic |
| TGACACTGAATATGAAGATT+GGG | 0.520692 | 8_3:+4191006 | Msa1270840:CDS |
| TCCTGATGGAACAGATTACA+TGG | 0.528541 | 8_3:+4192668 | Msa1270840:CDS |
| CTGAAATCTCTGAGGTGTTG+AGG | 0.529947 | 8_3:-4192181 | None:intergenic |
| CCATCCAAGACTTCACAAAT+GGG | 0.530333 | 8_3:-4192455 | None:intergenic |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 8_3:+4191512 | Msa1270840:CDS |
| TCTACAAAGAAAGGAGGTAG+TGG | 0.533604 | 8_3:+4192618 | Msa1270840:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 8_3:-4191549 | None:intergenic |
| ATGGATCAATCACCTGCAGC+TGG | 0.548822 | 8_3:+4190401 | Msa1270840:CDS |
| CTACAAAGAAAGGAGGTAGT+GGG | 0.553421 | 8_3:+4192619 | Msa1270840:CDS |
| AAAGTGATGGTGATTTCTGA+AGG | 0.556976 | 8_3:-4191384 | None:intergenic |
| CGGACGAGTCGACAAGAGGA+AGG | 0.559006 | 8_3:+4191278 | Msa1270840:CDS |
| GGCAAGCCTTGTGGATTGAA+GGG | 0.560023 | 8_3:-4192745 | None:intergenic |
| CAAAGTCGACACCTAGAACC+TGG | 0.561106 | 8_3:-4192257 | None:intergenic |
| AATTCATATGCTCAACAGGT+TGG | 0.561704 | 8_3:+4192213 | Msa1270840:CDS |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 8_3:+4191513 | Msa1270840:CDS |
| TTAGGAATGGATAAAAGAGA+TGG | 0.562372 | 8_3:+4192092 | Msa1270840:intron |
| TTCTTCGTTTATAAAAGAAG+TGG | 0.564709 | 8_3:-4192998 | None:intergenic |
| GTGAAATGGAGGAAGCTGAA+TGG | 0.564983 | 8_3:+4191161 | Msa1270840:CDS |
| AAATGTAGTCTACGAGGATG+AGG | 0.567019 | 8_3:+4192830 | Msa1270840:CDS |
| GTGGCATCTCTCAGAGCAGA+GGG | 0.567107 | 8_3:-4192778 | None:intergenic |
| TCTTCGTTTATAAAAGAAGT+GGG | 0.571401 | 8_3:-4192997 | None:intergenic |
| TGGTTTAAGGAGTGAAATGG+AGG | 0.578038 | 8_3:+4191150 | Msa1270840:intron |
| ATCATTGGTTAACAATTGGG+AGG | 0.578607 | 8_3:+4191480 | Msa1270840:CDS |
| AACTCTCAGAGGCTACTACA+AGG | 0.578621 | 8_3:+4191588 | Msa1270840:CDS |
| GTTGAATAGGGCAAGCCTTG+TGG | 0.579100 | 8_3:-4192754 | None:intergenic |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 8_3:+4191288 | Msa1270840:CDS |
| GCTGCGGACGAGTCGACAAG+AGG | 0.586696 | 8_3:+4191274 | Msa1270840:CDS |
| CTTCTAGGCCAATCTCCAGT+AGG | 0.593952 | 8_3:-4192146 | None:intergenic |
| GGGCCTTCAATGATGGCCAA+TGG | 0.595028 | 8_3:+4191356 | Msa1270840:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 8_3:-4191816 | None:intergenic |
| TTCTCACATCCAACTCTCAG+AGG | 0.605503 | 8_3:+4191577 | Msa1270840:CDS |
| CTGGTTGATGGTATTTGCTG+CGG | 0.606752 | 8_3:+4191258 | Msa1270840:CDS |
| GGAACAGATTACATGGATGA+TGG | 0.606894 | 8_3:+4192675 | Msa1270840:CDS |
| CTAAACTCTACAAAGAAAGG+AGG | 0.610072 | 8_3:+4192612 | Msa1270840:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 8_3:-4191397 | None:intergenic |
| TGAAAAGTATCTTGGAATGC+CGG | 0.623758 | 8_3:+4192497 | Msa1270840:CDS |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 8_3:+4191490 | Msa1270840:CDS |
| TTGGATGGAAGCCCACATAG+AGG | 0.626696 | 8_3:+4192470 | Msa1270840:CDS |
| TTCACTCACCACAAAATCCA+GGG | 0.626794 | 8_3:-4191428 | None:intergenic |
| AGTGGCATCTCTCAGAGCAG+AGG | 0.630497 | 8_3:-4192779 | None:intergenic |
| GGACGAGTCGACAAGAGGAA+GGG | 0.630959 | 8_3:+4191279 | Msa1270840:CDS |
| GAAATCTCTGAGGTGTTGAG+GGG | 0.645814 | 8_3:-4192179 | None:intergenic |
| AAGTGATGGTGATTTCTGAA+GGG | 0.650216 | 8_3:-4191383 | None:intergenic |
| TGCTCTGAGAGATGCCACTG+GGG | 0.651417 | 8_3:+4192783 | Msa1270840:CDS |
| TACAAAGAAAGGAGGTAGTG+GGG | 0.655170 | 8_3:+4192620 | Msa1270840:CDS |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 8_3:+4191600 | Msa1270840:CDS |
| GGAGGAAGCTGAATGGCAGA+TGG | 0.662800 | 8_3:+4191168 | Msa1270840:CDS |
| GCTAGGAACTTACCTTGACA+TGG | 0.669271 | 8_3:-4191612 | None:intergenic |
| TGATATCCCTTCAATCCACA+AGG | 0.672007 | 8_3:+4192739 | Msa1270840:CDS |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 8_3:+4191514 | Msa1270840:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 8_3:-4191825 | None:intergenic |
| GGGTTGAACTGAAATCTCTG+AGG | 0.711750 | 8_3:-4192189 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 8_3:-4191806 | None:intergenic |
| GTTGCAAAATGTAGTCTACG+AGG | 0.776748 | 8_3:+4192824 | Msa1270840:CDS |
| AGTCGACACCTAGAACCTGG+TGG | 0.780190 | 8_3:-4192254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAATATATATGGTTTT+TGG | + | chr8_3:4191130-4191149 | Msa1270840:intron | 10.0% |
| !!! | GGAAATTTTTATTAATAAAT+TGG | - | chr8_3:4191948-4191967 | None:intergenic | 10.0% |
| !!! | AATAATTAATGTTTTTTCTA+CGG | + | chr8_3:4193112-4193131 | Msa1270840:three_prime_UTR | 10.0% |
| !! | ATATATATATAATCACAATG+TGG | + | chr8_3:4190847-4190866 | Msa1270840:intron | 15.0% |
| !! | ATTATTATTATTAGAGTCTT+AGG | + | chr8_3:4191078-4191097 | Msa1270840:intron | 15.0% |
| !! | TGTTAATTCTAATTAACTTT+AGG | + | chr8_3:4191102-4191121 | Msa1270840:intron | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | - | chr8_3:4191665-4191684 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | + | chr8_3:4191665-4191684 | Msa1270840:intron | 15.0% |
| !! | TTAGATGTTTAAAGAAATAA+TGG | - | chr8_3:4192382-4192401 | None:intergenic | 15.0% |
| !!! | ATTTTTTCAAAAACAAAAGT+TGG | - | chr8_3:4193059-4193078 | None:intergenic | 15.0% |
| !! | TTTGAAAAAATCAAAAGTTA+AGG | + | chr8_3:4193068-4193087 | Msa1270840:three_prime_UTR | 15.0% |
| !!! | ATAATTAATGTTTTTTCTAC+GGG | + | chr8_3:4193113-4193132 | Msa1270840:three_prime_UTR | 15.0% |
| !! | AGATGTTTATCTTAGATATA+AGG | + | chr8_3:4190554-4190573 | Msa1270840:intron | 20.0% |
| !! | GATGTTTATCTTAGATATAA+GGG | + | chr8_3:4190555-4190574 | Msa1270840:intron | 20.0% |
| !! | GGCACTTAATTAAATATATA+TGG | + | chr8_3:4191123-4191142 | Msa1270840:intron | 20.0% |
| !!! | TATATATGGTTTTTGGTTTA+AGG | + | chr8_3:4191137-4191156 | Msa1270840:intron | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | + | chr8_3:4191476-4191495 | Msa1270840:CDS | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | + | chr8_3:4191477-4191496 | Msa1270840:CDS | 20.0% |
| !! | TGGAAAAAAATTAGAAAAGA+GGG | - | chr8_3:4191969-4191988 | None:intergenic | 20.0% |
| !! | ATGGAAAAAAATTAGAAAAG+AGG | - | chr8_3:4191970-4191989 | None:intergenic | 20.0% |
| !! | GCAATATTATTATTGTGTTT+GGG | - | chr8_3:4192008-4192027 | None:intergenic | 20.0% |
| !! | TGCAATATTATTATTGTGTT+TGG | - | chr8_3:4192009-4192028 | None:intergenic | 20.0% |
| !! | AATATATTCAATTGAGTTCA+AGG | - | chr8_3:4192070-4192089 | None:intergenic | 20.0% |
| !! | CTCAATTGAATATATTCTTT+AGG | + | chr8_3:4192074-4192093 | Msa1270840:intron | 20.0% |
| !!! | TTGAATATATTCTTTAGGAA+TGG | + | chr8_3:4192079-4192098 | Msa1270840:intron | 20.0% |
| !! | ATGTTTAAAGAAATAATGGT+TGG | - | chr8_3:4192378-4192397 | None:intergenic | 20.0% |
| !!! | AAAAACAATTATTTTGAGAC+AGG | + | chr8_3:4192957-4192976 | Msa1270840:three_prime_UTR | 20.0% |
| !!! | AAAACAATTATTTTGAGACA+GGG | + | chr8_3:4192958-4192977 | Msa1270840:three_prime_UTR | 20.0% |
| ! | TTTATCTTAGATATAAGGGA+TGG | + | chr8_3:4190559-4190578 | Msa1270840:intron | 25.0% |
| ! | GGATAAAATACAATACAAGA+GGG | - | chr8_3:4190607-4190626 | None:intergenic | 25.0% |
| ! | TGGATAAAATACAATACAAG+AGG | - | chr8_3:4190608-4190627 | None:intergenic | 25.0% |
| ! | GAAAATCTAGAAAGAACTTA+GGG | - | chr8_3:4190633-4190652 | None:intergenic | 25.0% |
| ! | AGAAAATCTAGAAAGAACTT+AGG | - | chr8_3:4190634-4190653 | None:intergenic | 25.0% |
| ! | TATGTATACCATTATTAAGC+CGG | - | chr8_3:4190727-4190746 | None:intergenic | 25.0% |
| !! | TTTTCTTAGCTTCAAAGTTA+GGG | + | chr8_3:4190754-4190773 | Msa1270840:intron | 25.0% |
| ! | GAAAGGAAATAACACATAAT+TGG | - | chr8_3:4190937-4190956 | None:intergenic | 25.0% |
| ! | AATAGTGAGAAAAATGAGAA+AGG | - | chr8_3:4190954-4190973 | None:intergenic | 25.0% |
| ! | CAAATTCCATCTTAACTTAT+GGG | + | chr8_3:4191047-4191066 | Msa1270840:CDS | 25.0% |
| ! | TTGAATCCATTTACATAGAA+AGG | - | chr8_3:4191232-4191251 | None:intergenic | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | + | chr8_3:4191405-4191424 | Msa1270840:CDS | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | + | chr8_3:4191465-4191484 | Msa1270840:CDS | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | - | chr8_3:4191693-4191712 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | + | chr8_3:4191745-4191764 | Msa1270840:CDS | 25.0% |
| ! | TTGTTTCAAAGAGTTCAAAT+TGG | - | chr8_3:4191898-4191917 | None:intergenic | 25.0% |
| ! | TAATAAATTGGCGCTAAAAA+GGG | - | chr8_3:4191936-4191955 | None:intergenic | 25.0% |
| ! | TTAATAAATTGGCGCTAAAA+AGG | - | chr8_3:4191937-4191956 | None:intergenic | 25.0% |
| !!! | TGGGTTTCTTTTTGAAAATA+TGG | - | chr8_3:4191989-4192008 | None:intergenic | 25.0% |
| ! | TCTTTAAACATCTAACATTC+AGG | + | chr8_3:4192387-4192406 | Msa1270840:intron | 25.0% |
| ! | CTATATGTTGAATTATAACC+AGG | - | chr8_3:4192558-4192577 | None:intergenic | 25.0% |
| ! | ATTCTAAACTCTACAAAGAA+AGG | + | chr8_3:4192609-4192628 | Msa1270840:CDS | 25.0% |
| !!! | AGTTAAGTTGGAATAAATAC+AGG | + | chr8_3:4192856-4192875 | Msa1270840:exon | 25.0% |
| ! | TCTTCGTTTATAAAAGAAGT+GGG | - | chr8_3:4193000-4193019 | None:intergenic | 25.0% |
| ! | TTCTTCGTTTATAAAAGAAG+TGG | - | chr8_3:4193001-4193020 | None:intergenic | 25.0% |
| ! | AGTTCTTTCTAGATTTTCTG+TGG | + | chr8_3:4190635-4190654 | Msa1270840:intron | 30.0% |
| !! | CTAACTTTGAAGCTAAGAAA+AGG | - | chr8_3:4190755-4190774 | None:intergenic | 30.0% |
| ! | CTTTTCTTAGCTTCAAAGTT+AGG | + | chr8_3:4190753-4190772 | Msa1270840:intron | 30.0% |
| ATGACACTGAATATGAAGAT+TGG | + | chr8_3:4191005-4191024 | Msa1270840:CDS | 30.0% | |
| TGACACTGAATATGAAGATT+GGG | + | chr8_3:4191006-4191025 | Msa1270840:CDS | 30.0% | |
| CCATAAGTTAAGATGGAATT+TGG | - | chr8_3:4191049-4191068 | None:intergenic | 30.0% | |
| CCAAATTCCATCTTAACTTA+TGG | + | chr8_3:4191046-4191065 | Msa1270840:CDS | 30.0% | |
| !!! | TTTTGGTTTAAGGAGTGAAA+TGG | + | chr8_3:4191147-4191166 | Msa1270840:intron | 30.0% |
| ATCCATTTACATAGAAAGGT+TGG | - | chr8_3:4191228-4191247 | None:intergenic | 30.0% | |
| ! | TAAATGGATTCAACACTTAC+TGG | + | chr8_3:4191239-4191258 | Msa1270840:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | - | chr8_3:4191400-4191419 | None:intergenic | 30.0% | |
| !!! | AACAGGAAGCATTAAGTTTT+AGG | - | chr8_3:4191648-4191667 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | + | chr8_3:4191768-4191787 | Msa1270840:CDS | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | + | chr8_3:4191769-4191788 | Msa1270840:CDS | 30.0% |
| AATAAATTGGCGCTAAAAAG+GGG | - | chr8_3:4191935-4191954 | None:intergenic | 30.0% | |
| TATTCAATTGAGTTCAAGGA+AGG | - | chr8_3:4192066-4192085 | None:intergenic | 30.0% | |
| TTAGGAATGGATAAAAGAGA+TGG | + | chr8_3:4192092-4192111 | Msa1270840:intron | 30.0% | |
| GATATCATGCTTGAAATAGA+AGG | - | chr8_3:4192726-4192745 | None:intergenic | 30.0% | |
| GTTTATTTGTCTCTGTGTTG+TGG | - | chr8_3:4190435-4190454 | None:intergenic | 35.0% | |
| CAACACAGAGACAAATAAAC+AGG | + | chr8_3:4190435-4190454 | Msa1270840:CDS | 35.0% | |
| CAGAGACAAATAAACAGGTA+TGG | + | chr8_3:4190440-4190459 | Msa1270840:intron | 35.0% | |
| TCTAGAAAGAACTTAGGGAA+TGG | - | chr8_3:4190628-4190647 | None:intergenic | 35.0% | |
| CTAATTCCTAAGGTTCAAGT+GGG | - | chr8_3:4190663-4190682 | None:intergenic | 35.0% | |
| TATGTCAGTCCTAATTCCTA+AGG | - | chr8_3:4190673-4190692 | None:intergenic | 35.0% | |
| TTATTAAGCCGGCAAAACAA+GGG | - | chr8_3:4190716-4190735 | None:intergenic | 35.0% | |
| ATTATTAAGCCGGCAAAACA+AGG | - | chr8_3:4190717-4190736 | None:intergenic | 35.0% | |
| !!! | TTGTTTTGCCGGCTTAATAA+TGG | + | chr8_3:4190716-4190735 | Msa1270840:intron | 35.0% |
| TACGTACCCATAAGTTAAGA+TGG | - | chr8_3:4191056-4191075 | None:intergenic | 35.0% | |
| GACCAACCTTTCTATGTAAA+TGG | + | chr8_3:4191223-4191242 | Msa1270840:CDS | 35.0% | |
| ! | ATTCAACACTTACTGGTTGA+TGG | + | chr8_3:4191246-4191265 | Msa1270840:CDS | 35.0% |
| TTCAAACATGCATTCTCAGT+TGG | + | chr8_3:4191313-4191332 | Msa1270840:CDS | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | + | chr8_3:4191336-4191355 | Msa1270840:CDS | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | - | chr8_3:4191386-4191405 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | - | chr8_3:4191387-4191406 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | + | chr8_3:4191480-4191499 | Msa1270840:CDS | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | - | chr8_3:4191563-4191582 | None:intergenic | 35.0% | |
| !! | TTTTAGGTACATCTCAAGCT+AGG | - | chr8_3:4191632-4191651 | None:intergenic | 35.0% |
| ATAAATTGGCGCTAAAAAGG+GGG | - | chr8_3:4191934-4191953 | None:intergenic | 35.0% | |
| !! | ATTGGCCTAGAAGGATTTTA+TGG | + | chr8_3:4192156-4192175 | Msa1270840:CDS | 35.0% |
| CCTGTTGAGCATATGAATTT+GGG | - | chr8_3:4192212-4192231 | None:intergenic | 35.0% | |
| ACCTGTTGAGCATATGAATT+TGG | - | chr8_3:4192213-4192232 | None:intergenic | 35.0% | |
| AATTCATATGCTCAACAGGT+TGG | + | chr8_3:4192213-4192232 | Msa1270840:CDS | 35.0% | |
| ! | TGATTTTATCAGAAACCACC+AGG | + | chr8_3:4192239-4192258 | Msa1270840:CDS | 35.0% |
| CTCATATATATCCAGACTCT+TGG | + | chr8_3:4192286-4192305 | Msa1270840:CDS | 35.0% | |
| ATATATCCAGACTCTTGGTA+AGG | + | chr8_3:4192291-4192310 | Msa1270840:intron | 35.0% | |
| TACTTAAGTAGAAGCCATCA+AGG | - | chr8_3:4192323-4192342 | None:intergenic | 35.0% | |
| GATTGTGAAATCCTTCAACA+AGG | - | chr8_3:4192417-4192436 | None:intergenic | 35.0% | |
| AAGACTTCACAAATGGGATA+TGG | - | chr8_3:4192452-4192471 | None:intergenic | 35.0% | |
| ATATCCCATTTGTGAAGTCT+TGG | + | chr8_3:4192451-4192470 | Msa1270840:CDS | 35.0% | |
| !! | TGAAAAGTATCTTGGAATGC+CGG | + | chr8_3:4192497-4192516 | Msa1270840:CDS | 35.0% |
| CTAAACTCTACAAAGAAAGG+AGG | + | chr8_3:4192612-4192631 | Msa1270840:CDS | 35.0% | |
| CCTAATTCCTAAGGTTCAAG+TGG | - | chr8_3:4190664-4190683 | None:intergenic | 40.0% | |
| CCACTTGAACCTTAGGAATT+AGG | + | chr8_3:4190661-4190680 | Msa1270840:intron | 40.0% | |
| CAGAGTGTGTATGCATGTAT+TGG | - | chr8_3:4190874-4190893 | None:intergenic | 40.0% | |
| CAATACATGCATACACACTC+TGG | + | chr8_3:4190872-4190891 | Msa1270840:intron | 40.0% | |
| TGGCTGGGTAACATAACATA+TGG | + | chr8_3:4190892-4190911 | Msa1270840:intron | 40.0% | |
| ATCAAATGCAGTTGAGCTGA+AGG | - | chr8_3:4190987-4191006 | None:intergenic | 40.0% | |
| TGGTTTAAGGAGTGAAATGG+AGG | + | chr8_3:4191150-4191169 | Msa1270840:intron | 40.0% | |
| GTTGGTCATTCACTGCAAAT+TGG | - | chr8_3:4191210-4191229 | None:intergenic | 40.0% | |
| ! | CAGTTGGTATGACAGTTTGT+AGG | + | chr8_3:4191329-4191348 | Msa1270840:CDS | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | + | chr8_3:4191335-4191354 | Msa1270840:CDS | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | - | chr8_3:4191431-4191450 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | + | chr8_3:4191487-4191506 | Msa1270840:CDS | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | + | chr8_3:4191513-4191532 | Msa1270840:CDS | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | + | chr8_3:4191514-4191533 | Msa1270840:CDS | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | - | chr8_3:4191552-4191571 | None:intergenic | 40.0% | |
| AGCTCCCAAGCAAAAATTGT+TGG | - | chr8_3:4191776-4191795 | None:intergenic | 40.0% | |
| !! | TGAAATCTCTGAGGTGTTGA+GGG | - | chr8_3:4192183-4192202 | None:intergenic | 40.0% |
| CCCAAATTCATATGCTCAAC+AGG | + | chr8_3:4192209-4192228 | Msa1270840:CDS | 40.0% | |
| TAAGTAGAAGCCATCAAGGA+AGG | - | chr8_3:4192319-4192338 | None:intergenic | 40.0% | |
| ATTCAGGCTTACCTTGTTGA+AGG | + | chr8_3:4192403-4192422 | Msa1270840:intron | 40.0% | |
| CCATCCAAGACTTCACAAAT+GGG | - | chr8_3:4192458-4192477 | None:intergenic | 40.0% | |
| TCCATCCAAGACTTCACAAA+TGG | - | chr8_3:4192459-4192478 | None:intergenic | 40.0% | |
| ! | CTTTTCAGCATCCTCTATGT+GGG | - | chr8_3:4192484-4192503 | None:intergenic | 40.0% |
| ! | ACTTTTCAGCATCCTCTATG+TGG | - | chr8_3:4192485-4192504 | None:intergenic | 40.0% |
| !! | GAGGATGCTGAAAAGTATCT+TGG | + | chr8_3:4192489-4192508 | Msa1270840:CDS | 40.0% |
| CCAAACTCACCAAAAACAAC+CGG | - | chr8_3:4192519-4192538 | None:intergenic | 40.0% | |
| TCTACAAAGAAAGGAGGTAG+TGG | + | chr8_3:4192618-4192637 | Msa1270840:CDS | 40.0% | |
| CTACAAAGAAAGGAGGTAGT+GGG | + | chr8_3:4192619-4192638 | Msa1270840:CDS | 40.0% | |
| TACAAAGAAAGGAGGTAGTG+GGG | + | chr8_3:4192620-4192639 | Msa1270840:CDS | 40.0% | |
| TCCTGATGGAACAGATTACA+TGG | + | chr8_3:4192668-4192687 | Msa1270840:CDS | 40.0% | |
| TCCATGTAATCTGTTCCATC+AGG | - | chr8_3:4192672-4192691 | None:intergenic | 40.0% | |
| GGAACAGATTACATGGATGA+TGG | + | chr8_3:4192675-4192694 | Msa1270840:CDS | 40.0% | |
| TGATATCCCTTCAATCCACA+AGG | + | chr8_3:4192739-4192758 | Msa1270840:CDS | 40.0% | |
| ! | TTTTCTTCTTACAACCCCAG+TGG | - | chr8_3:4192800-4192819 | None:intergenic | 40.0% |
| CTGGGGTTGTAAGAAGAAAA+AGG | + | chr8_3:4192800-4192819 | Msa1270840:CDS | 40.0% | |
| GTTGCAAAATGTAGTCTACG+AGG | + | chr8_3:4192824-4192843 | Msa1270840:CDS | 40.0% | |
| AAATGTAGTCTACGAGGATG+AGG | + | chr8_3:4192830-4192849 | Msa1270840:CDS | 40.0% | |
| AGGATGAGGAGTAGTTAAGT+TGG | + | chr8_3:4192844-4192863 | Msa1270840:exon | 40.0% | |
| !!! | TACTCCTACCCTTGTTTTGC+CGG | + | chr8_3:4190705-4190724 | Msa1270840:intron | 45.0% |
| GTGAAATGGAGGAAGCTGAA+TGG | + | chr8_3:4191161-4191180 | Msa1270840:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | + | chr8_3:4191181-4191200 | Msa1270840:CDS | 45.0% | |
| !! | CTGGTTGATGGTATTTGCTG+CGG | + | chr8_3:4191258-4191277 | Msa1270840:CDS | 45.0% |
| TCTCCATTGGCCATCATTGA+AGG | - | chr8_3:4191362-4191381 | None:intergenic | 45.0% | |
| ! | ATTTCTGAAGGGCTCTCCAT+TGG | - | chr8_3:4191375-4191394 | None:intergenic | 45.0% |
| TGAAGTAGTATTCAAGGCCC+TGG | + | chr8_3:4191411-4191430 | Msa1270840:CDS | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | + | chr8_3:4191420-4191439 | Msa1270840:CDS | 45.0% |
| CTTCACTCACCACAAAATCC+AGG | - | chr8_3:4191432-4191451 | None:intergenic | 45.0% | |
| ! | AACAATTGGGAGGCATATGG+TGG | + | chr8_3:4191490-4191509 | Msa1270840:CDS | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | + | chr8_3:4191512-4191531 | Msa1270840:CDS | 45.0% | |
| TTCTCACATCCAACTCTCAG+AGG | + | chr8_3:4191577-4191596 | Msa1270840:CDS | 45.0% | |
| ! | TTGTAGTAGCCTCTGAGAGT+TGG | - | chr8_3:4191589-4191608 | None:intergenic | 45.0% |
| AACTCTCAGAGGCTACTACA+AGG | + | chr8_3:4191588-4191607 | Msa1270840:CDS | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | + | chr8_3:4191600-4191619 | Msa1270840:CDS | 45.0% | |
| GCTAGGAACTTACCTTGACA+TGG | - | chr8_3:4191615-4191634 | None:intergenic | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | - | chr8_3:4191828-4191847 | None:intergenic | 45.0% | |
| CCAATCTCCAGTAGGTGTTT+CGG | - | chr8_3:4192141-4192160 | None:intergenic | 45.0% | |
| AGGGGCCATAAAATCCTTCT+AGG | - | chr8_3:4192164-4192183 | None:intergenic | 45.0% | |
| !! | GAAATCTCTGAGGTGTTGAG+GGG | - | chr8_3:4192182-4192201 | None:intergenic | 45.0% |
| !! | CTGAAATCTCTGAGGTGTTG+AGG | - | chr8_3:4192184-4192203 | None:intergenic | 45.0% |
| GGGTTGAACTGAAATCTCTG+AGG | - | chr8_3:4192192-4192211 | None:intergenic | 45.0% | |
| ATCAGAAACCACCAGGTTCT+AGG | + | chr8_3:4192246-4192265 | Msa1270840:CDS | 45.0% | |
| AAGGAACCTTACCAAGAGTC+TGG | - | chr8_3:4192300-4192319 | None:intergenic | 45.0% | |
| TGGTAAGGTTCCTTCCTTGA+TGG | + | chr8_3:4192306-4192325 | Msa1270840:intron | 45.0% | |
| CCCATTTGTGAAGTCTTGGA+TGG | + | chr8_3:4192455-4192474 | Msa1270840:CDS | 45.0% | |
| !! | CTTGGAATGCCGGTTGTTTT+TGG | + | chr8_3:4192507-4192526 | Msa1270840:CDS | 45.0% |
| !!! | CCGGTTGTTTTTGGTGAGTT+TGG | + | chr8_3:4192516-4192535 | Msa1270840:CDS | 45.0% |
| GGTGTATCTGCAAAAGATCC+TGG | + | chr8_3:4192537-4192556 | Msa1270840:CDS | 45.0% | |
| CAGGAAAGAACTGCCACAAA+AGG | - | chr8_3:4192653-4192672 | None:intergenic | 45.0% | |
| TTGTGGCAGTTCTTTCCTGA+TGG | + | chr8_3:4192654-4192673 | Msa1270840:CDS | 45.0% | |
| AGAGCAGAGGGAGTTGAATA+GGG | - | chr8_3:4192769-4192788 | None:intergenic | 45.0% | |
| ATGGATCAATCACCTGCAGC+TGG | + | chr8_3:4190401-4190420 | Msa1270840:CDS | 50.0% | |
| GTGGAACCCACTTGAACCTT+AGG | + | chr8_3:4190654-4190673 | Msa1270840:intron | 50.0% | |
| TAAGCCGGCAAAACAAGGGT+AGG | - | chr8_3:4190712-4190731 | None:intergenic | 50.0% | |
| ACATGCATACACACTCTGGC+TGG | + | chr8_3:4190876-4190895 | Msa1270840:intron | 50.0% | |
| CATGCATACACACTCTGGCT+GGG | + | chr8_3:4190877-4190896 | Msa1270840:intron | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | + | chr8_3:4191349-4191368 | Msa1270840:CDS | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | + | chr8_3:4191823-4191842 | Msa1270840:CDS | 50.0% | |
| CGTTGATCCGAAACACCTAC+TGG | + | chr8_3:4192131-4192150 | Msa1270840:CDS | 50.0% | |
| CCGAAACACCTACTGGAGAT+TGG | + | chr8_3:4192138-4192157 | Msa1270840:CDS | 50.0% | |
| CTTCTAGGCCAATCTCCAGT+AGG | - | chr8_3:4192149-4192168 | None:intergenic | 50.0% | |
| !! | CTACTGGAGATTGGCCTAGA+AGG | + | chr8_3:4192147-4192166 | Msa1270840:CDS | 50.0% |
| CAAAGTCGACACCTAGAACC+TGG | - | chr8_3:4192260-4192279 | None:intergenic | 50.0% | |
| TTGGATGGAAGCCCACATAG+AGG | + | chr8_3:4192470-4192489 | Msa1270840:CDS | 50.0% | |
| ! | GGCAAGCCTTGTGGATTGAA+GGG | - | chr8_3:4192748-4192767 | None:intergenic | 50.0% |
| GTTGAATAGGGCAAGCCTTG+TGG | - | chr8_3:4192757-4192776 | None:intergenic | 50.0% | |
| CAGAGCAGAGGGAGTTGAAT+AGG | - | chr8_3:4192770-4192789 | None:intergenic | 50.0% | |
| ATCACCTGCAGCTGGCTACA+TGG | + | chr8_3:4190409-4190428 | Msa1270840:CDS | 55.0% | |
| GGAGGAAGCTGAATGGCAGA+TGG | + | chr8_3:4191168-4191187 | Msa1270840:CDS | 55.0% | |
| GGACGAGTCGACAAGAGGAA+GGG | + | chr8_3:4191279-4191298 | Msa1270840:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | + | chr8_3:4191288-4191307 | Msa1270840:CDS | 55.0% | |
| GGGCCTTCAATGATGGCCAA+TGG | + | chr8_3:4191356-4191375 | Msa1270840:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | - | chr8_3:4191819-4191838 | None:intergenic | 55.0% | |
| AGTCGACACCTAGAACCTGG+TGG | - | chr8_3:4192257-4192276 | None:intergenic | 55.0% | |
| !! | AAGAAAGGAGGTAGTGGGGC+TGG | + | chr8_3:4192624-4192643 | Msa1270840:CDS | 55.0% |
| ! | GGGCAAGCCTTGTGGATTGA+AGG | - | chr8_3:4192749-4192768 | None:intergenic | 55.0% |
| GTGGCATCTCTCAGAGCAGA+GGG | - | chr8_3:4192781-4192800 | None:intergenic | 55.0% | |
| AGTGGCATCTCTCAGAGCAG+AGG | - | chr8_3:4192782-4192801 | None:intergenic | 55.0% | |
| !! | TCTGCTCTGAGAGATGCCAC+TGG | + | chr8_3:4192781-4192800 | Msa1270840:CDS | 55.0% |
| !! | CTGCTCTGAGAGATGCCACT+GGG | + | chr8_3:4192782-4192801 | Msa1270840:CDS | 55.0% |
| !! | TGCTCTGAGAGATGCCACTG+GGG | + | chr8_3:4192783-4192802 | Msa1270840:CDS | 55.0% |
| CGGACGAGTCGACAAGAGGA+AGG | + | chr8_3:4191278-4191297 | Msa1270840:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | + | chr8_3:4191526-4191545 | Msa1270840:CDS | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | - | chr8_3:4191809-4191828 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | + | chr8_3:4191809-4191828 | Msa1270840:CDS | 60.0% | |
| ! | GTGGGGCTGGAAGCCTTTTG+TGG | + | chr8_3:4192637-4192656 | Msa1270840:CDS | 60.0% |
| GTGGCCATGTAGCCAGCTGC+AGG | - | chr8_3:4190416-4190435 | None:intergenic | 65.0% | |
| GCTGCGGACGAGTCGACAAG+AGG | + | chr8_3:4191274-4191293 | Msa1270840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 4190401 | 4193198 | 4190401 | ID=Msa1270840;Name=Msa1270840 |
| chr8_3 | mRNA | 4190401 | 4193198 | 4190401 | ID=Msa1270840-mRNA-1;Parent=Msa1270840;Name=Msa1270840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.8|0.66|0.83|1|1|6|341|454 |
| chr8_3 | exon | 4190401 | 4190456 | 4190401 | ID=Msa1270840-mRNA-1:exon:1407;Parent=Msa1270840-mRNA-1 |
| chr8_3 | exon | 4190991 | 4191068 | 4190991 | ID=Msa1270840-mRNA-1:exon:1408;Parent=Msa1270840-mRNA-1 |
| chr8_3 | exon | 4191159 | 4191621 | 4191159 | ID=Msa1270840-mRNA-1:exon:1409;Parent=Msa1270840-mRNA-1 |
| chr8_3 | exon | 4191722 | 4191844 | 4191722 | ID=Msa1270840-mRNA-1:exon:1410;Parent=Msa1270840-mRNA-1 |
| chr8_3 | exon | 4192096 | 4192307 | 4192096 | ID=Msa1270840-mRNA-1:exon:1411;Parent=Msa1270840-mRNA-1 |
| chr8_3 | exon | 4192425 | 4193198 | 4192425 | ID=Msa1270840-mRNA-1:exon:1412;Parent=Msa1270840-mRNA-1 |
| chr8_3 | CDS | 4190401 | 4190456 | 4190401 | ID=Msa1270840-mRNA-1:cds;Parent=Msa1270840-mRNA-1 |
| chr8_3 | CDS | 4190991 | 4191068 | 4190991 | ID=Msa1270840-mRNA-1:cds;Parent=Msa1270840-mRNA-1 |
| chr8_3 | CDS | 4191159 | 4191621 | 4191159 | ID=Msa1270840-mRNA-1:cds;Parent=Msa1270840-mRNA-1 |
| chr8_3 | CDS | 4191722 | 4191844 | 4191722 | ID=Msa1270840-mRNA-1:cds;Parent=Msa1270840-mRNA-1 |
| chr8_3 | CDS | 4192096 | 4192307 | 4192096 | ID=Msa1270840-mRNA-1:cds;Parent=Msa1270840-mRNA-1 |
| chr8_3 | CDS | 4192425 | 4192857 | 4192425 | ID=Msa1270840-mRNA-1:cds;Parent=Msa1270840-mRNA-1 |
| chr8_3 | three_prime_UTR | 4192858 | 4193198 | 4192858 | ID=Msa1270840-mRNA-1:three_prime_utr;Parent=Msa1270840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
