AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369410 MtrunA17_Chr8g0334501 97.619 462 10 1 1 462 1 461 0.0 943
Msa1369410 MtrunA17_Chr7g0245051 80.047 426 81 1 40 461 32 457 0.0 739
Msa1369410 MtrunA17_Chr7g0245101 76.818 440 97 2 27 461 19 458 0.0 726
Msa1369410 MtrunA17_Chr4g0020521 51.187 379 182 1 64 442 35 410 3.22e-148 428
Msa1369410 MtrunA17_Chr5g0404601 51.938 387 183 2 56 441 24 408 7.33e-145 421
Msa1369410 MtrunA17_Chr1g0193531 52.703 370 172 2 64 433 30 396 3.58e-143 415
Msa1369410 MtrunA17_Chr1g0193611 51.081 370 179 1 64 433 33 400 5.55e-141 410
Msa1369410 MtrunA17_Chr7g0271511 49.618 393 185 3 41 433 47 426 1.60e-140 409
Msa1369410 MtrunA17_Chr3g0141751 49.602 377 182 3 58 432 21 391 1.67e-139 406
Msa1369410 MtrunA17_Chr1g0193551 52.162 370 173 3 64 433 36 401 1.89e-139 406
Msa1369410 MtrunA17_Chr1g0193601 51.081 370 179 1 64 433 33 400 4.01e-138 402
Msa1369410 MtrunA17_Chr4g0040121 47.959 392 199 3 50 436 23 414 4.41e-136 398
Msa1369410 MtrunA17_Chr2g0324441 46.579 380 200 2 57 433 34 413 2.10e-130 384
Msa1369410 MtrunA17_Chr1g0193541 46.237 372 161 4 64 433 32 366 4.94e-114 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369410 AT5G01930.1 67.615 457 129 4 7 461 8 447 0.0 654
Msa1369410 AT4G28320.1 47.848 395 196 2 58 442 36 430 4.10e-138 404
Msa1369410 AT2G20680.1 49.337 377 190 1 58 433 37 413 1.83e-135 397
Msa1369410 AT5G66460.1 49.471 378 188 1 64 441 32 406 4.45e-135 396
Msa1369410 AT3G10890.1 48.257 373 191 2 64 435 32 403 2.54e-133 391
Msa1369410 AT3G10900.1 48.930 374 188 3 64 435 30 402 1.24e-130 384
Msa1369410 AT1G02310.2 47.326 374 186 6 64 432 50 417 1.19e-121 362
Msa1369410 AT1G02310.1 47.326 374 186 6 64 432 30 397 1.26e-121 361
Msa1369410 AT3G30540.1 44.012 334 148 3 64 396 30 325 4.26e-95 290

Find 124 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTTGAGCATATGAATT+TGG 0.114525 tig0018782:+61628 None:intergenic
GACCAACCTTTCTATGTAAA+TGG 0.163607 tig0018782:-62615 Msa1369410:CDS
CCAAATTCCATCTTAACTTA+TGG 0.180101 tig0018782:-62792 Msa1369410:CDS
CCATAAGTTAAGATGGAATT+TGG 0.274969 tig0018782:+62792 None:intergenic
TAAATGGATTCAACACTTAC+TGG 0.284522 tig0018782:-62599 Msa1369410:CDS
GAAAGGAAATAACACATAAT+TGG 0.289737 tig0018782:+62904 None:intergenic
CAGAGCAGAGGGAGTTGAAT+AGG 0.306615 tig0018782:+61071 None:intergenic
CTCCTCTGGTGATACGTTAC+AGG 0.324607 tig0018782:-62015 Msa1369410:intron
GTTGGTCATTCACTGCAAAT+TGG 0.331406 tig0018782:+62631 None:intergenic
CAAATTCCATCTTAACTTAT+GGG 0.334308 tig0018782:-62791 Msa1369410:intron
TATTATCATTGGTTAACAAT+TGG 0.335350 tig0018782:-62362 Msa1369410:CDS
ATCAGAAACCACCAGGTTCT+AGG 0.336789 tig0018782:-61592 Msa1369410:CDS
CCCAAATTCATATGCTCAAC+AGG 0.348303 tig0018782:-61629 Msa1369410:CDS
ACTCACAAATATCACTTATA+AGG 0.349810 tig0018782:-62093 Msa1369410:CDS
TTGAATCCATTTACATAGAA+AGG 0.367924 tig0018782:+62609 None:intergenic
ATTATCATTGGTTAACAATT+GGG 0.370572 tig0018782:-62361 Msa1369410:CDS
GTATGACAGTTTGTAGGACT+TGG 0.375713 tig0018782:-62503 Msa1369410:CDS
AAGACTTCACAAATGGGATA+TGG 0.386757 tig0018782:+61389 None:intergenic
ATTCAACACTTACTGGTTGA+TGG 0.393983 tig0018782:-62592 Msa1369410:CDS
CTACTGGAGATTGGCCTAGA+AGG 0.395563 tig0018782:-61691 Msa1369410:CDS
CTGGGGTTGTAAGAAGAAAA+AGG 0.407765 tig0018782:-61038 Msa1369410:CDS
CAGTTGGTATGACAGTTTGT+AGG 0.408046 tig0018782:-62509 Msa1369410:CDS
TTGTGGCAGTTCTTTCCTGA+TGG 0.418500 tig0018782:-61184 Msa1369410:CDS
GTCAAGTGGGGCAATGCTGC+TGG 0.420167 tig0018782:-62312 Msa1369410:CDS
AATCAGACTCATATTATCAT+TGG 0.423314 tig0018782:-62373 Msa1369410:CDS
TCTCCATTGGCCATCATTGA+AGG 0.427709 tig0018782:+62479 None:intergenic
TCCATCCAAGACTTCACAAA+TGG 0.428524 tig0018782:+61382 None:intergenic
CCAATCTCCAGTAGGTGTTT+CGG 0.433449 tig0018782:+61700 None:intergenic
AGGGGCCATAAAATCCTTCT+AGG 0.439788 tig0018782:+61677 None:intergenic
AAGGAACCTTACCAAGAGTC+TGG 0.441773 tig0018782:+61541 None:intergenic
ATTTCTGAAGGGCTCTCCAT+TGG 0.442818 tig0018782:+62466 None:intergenic
GAGGATGCTGAAAAGTATCT+TGG 0.444822 tig0018782:-61349 Msa1369410:CDS
ATGACACTGAATATGAAGAT+TGG 0.449152 tig0018782:-62833 Msa1369410:CDS
TTATGATGAAGTAGTATTCA+AGG 0.449801 tig0018782:-62433 Msa1369410:CDS
AGAGCAGAGGGAGTTGAATA+GGG 0.450240 tig0018782:+61072 None:intergenic
CTGCTCTGAGAGATGCCACT+GGG 0.450365 tig0018782:-61056 Msa1369410:CDS
GTTAACAATTGGGAGGCATA+TGG 0.457775 tig0018782:-62351 Msa1369410:CDS
CCTGTTGAGCATATGAATTT+GGG 0.458492 tig0018782:+61629 None:intergenic
CCGAAACACCTACTGGAGAT+TGG 0.462360 tig0018782:-61700 Msa1369410:CDS
TGAAATCTCTGAGGTGTTGA+GGG 0.462829 tig0018782:+61658 None:intergenic
ATATCCCATTTGTGAAGTCT+TGG 0.463092 tig0018782:-61387 Msa1369410:CDS
AGTTAAGTTGGAATAAATAC+AGG 0.470036 tig0018782:-60982 Msa1369410:three_prime_UTR
GATATCATGCTTGAAATAGA+AGG 0.473952 tig0018782:+61115 None:intergenic
AGGATGAGGAGTAGTTAAGT+TGG 0.477048 tig0018782:-60994 Msa1369410:exon
GGGCAAGCCTTGTGGATTGA+AGG 0.483170 tig0018782:+61092 None:intergenic
AGGACTTGGGCCTTCAATGA+TGG 0.484180 tig0018782:-62489 Msa1369410:CDS
ATCCATTTACATAGAAAGGT+TGG 0.484246 tig0018782:+62613 None:intergenic
TCTGCTCTGAGAGATGCCAC+TGG 0.484589 tig0018782:-61057 Msa1369410:CDS
ATTCTAAACTCTACAAAGAA+AGG 0.486329 tig0018782:-61229 Msa1369410:CDS
ACATGCATACACACTCTGGC+TGG 0.489169 tig0018782:-62962 None:intergenic
TCCATGTAATCTGTTCCATC+AGG 0.489401 tig0018782:+61169 None:intergenic
CGTTGATCCGAAACACCTAC+TGG 0.492407 tig0018782:-61707 Msa1369410:CDS
CGATGCACCTCTGACTCCTC+TGG 0.493066 tig0018782:-62029 Msa1369410:CDS
AAGAAAGGAGGTAGTGGGGC+TGG 0.494489 tig0018782:-61214 Msa1369410:CDS
GGTGTATCTGCAAAAGATCC+TGG 0.494622 tig0018782:-61301 Msa1369410:CDS
CTCATATATATCCAGACTCT+TGG 0.494942 tig0018782:-61552 Msa1369410:intron
TACGTACCCATAAGTTAAGA+TGG 0.495593 tig0018782:+62785 None:intergenic
TGGCTGGGTAACATAACATA+TGG 0.496590 tig0018782:-62946 Msa1369410:exon
CTTCACTCACCACAAAATCC+AGG 0.501627 tig0018782:+62409 None:intergenic
CAGGAAAGAACTGCCACAAA+AGG 0.501942 tig0018782:+61188 None:intergenic
CTATATGTTGAATTATAACC+AGG 0.502559 tig0018782:+61283 None:intergenic
TATGACAGTTTGTAGGACTT+GGG 0.504511 tig0018782:-62502 Msa1369410:CDS
TGGCAGATGGTGCAAAAGAA+AGG 0.506336 tig0018782:-62657 Msa1369410:CDS
TGAAGTAGTATTCAAGGCCC+TGG 0.508682 tig0018782:-62427 Msa1369410:CDS
CCCATTTGTGAAGTCTTGGA+TGG 0.515184 tig0018782:-61383 Msa1369410:CDS
TTCAAACATGCATTCTCAGT+TGG 0.518806 tig0018782:-62525 Msa1369410:CDS
TTGTAGTAGCCTCTGAGAGT+TGG 0.519117 tig0018782:+62252 None:intergenic
TGACACTGAATATGAAGATT+GGG 0.520692 tig0018782:-62832 Msa1369410:CDS
ATCAAATGCAGTTGAGCTGA+AGG 0.526679 tig0018782:+62854 None:intergenic
TCCTGATGGAACAGATTACA+TGG 0.528541 tig0018782:-61170 Msa1369410:CDS
CTGAAATCTCTGAGGTGTTG+AGG 0.529947 tig0018782:+61657 None:intergenic
CCATCCAAGACTTCACAAAT+GGG 0.530333 tig0018782:+61383 None:intergenic
GCAAAGCACAGTATGTCAAG+TGG 0.532392 tig0018782:-62326 Msa1369410:CDS
TCTACAAAGAAAGGAGGTAG+TGG 0.533604 tig0018782:-61220 Msa1369410:CDS
CATCATCAGAGGTCAAGTTA+AGG 0.540046 tig0018782:+62289 None:intergenic
CTACAAAGAAAGGAGGTAGT+GGG 0.553421 tig0018782:-61219 Msa1369410:CDS
CATGCATACACACTCTGGCT+GGG 0.554834 tig0018782:-62961 Msa1369410:five_prime_UTR
AAAGTGATGGTGATTTCTGA+AGG 0.556976 tig0018782:+62454 None:intergenic
CGGACGAGTCGACAAGAGGA+AGG 0.559006 tig0018782:-62560 Msa1369410:CDS
GGCAAGCCTTGTGGATTGAA+GGG 0.560023 tig0018782:+61093 None:intergenic
CAAAGTCGACACCTAGAACC+TGG 0.561106 tig0018782:+61581 None:intergenic
AATTCATATGCTCAACAGGT+TGG 0.561704 tig0018782:-61625 Msa1369410:CDS
CAAAGCACAGTATGTCAAGT+GGG 0.561874 tig0018782:-62325 Msa1369410:CDS
TTAGGAATGGATAAAAGAGA+TGG 0.562372 tig0018782:-61746 Msa1369410:intron
TTCTTCGTTTATAAAAGAAG+TGG 0.564709 tig0018782:+60840 None:intergenic
GTGAAATGGAGGAAGCTGAA+TGG 0.564983 tig0018782:-62677 Msa1369410:CDS
AAATGTAGTCTACGAGGATG+AGG 0.567019 tig0018782:-61008 Msa1369410:CDS
GTGGCATCTCTCAGAGCAGA+GGG 0.567107 tig0018782:+61060 None:intergenic
CAATACATGCATACACACTC+TGG 0.570822 tig0018782:-62966 None:intergenic
TCTTCGTTTATAAAAGAAGT+GGG 0.571401 tig0018782:+60841 None:intergenic
TGGTTTAAGGAGTGAAATGG+AGG 0.578038 tig0018782:-62688 Msa1369410:intron
ATCATTGGTTAACAATTGGG+AGG 0.578607 tig0018782:-62358 Msa1369410:CDS
AACTCTCAGAGGCTACTACA+AGG 0.578621 tig0018782:-62250 Msa1369410:CDS
GTTGAATAGGGCAAGCCTTG+TGG 0.579100 tig0018782:+61084 None:intergenic
GACAAGAGGAAGGGTCACTC+AGG 0.585832 tig0018782:-62550 Msa1369410:CDS
GCTGCGGACGAGTCGACAAG+AGG 0.586696 tig0018782:-62564 Msa1369410:CDS
CTTCTAGGCCAATCTCCAGT+AGG 0.593952 tig0018782:+61692 None:intergenic
GGGCCTTCAATGATGGCCAA+TGG 0.595028 tig0018782:-62482 Msa1369410:CDS
CGTATCACCAGAGGAGTCAG+AGG 0.597961 tig0018782:+62022 None:intergenic
TTCTCACATCCAACTCTCAG+AGG 0.605503 tig0018782:-62261 Msa1369410:CDS
CTGGTTGATGGTATTTGCTG+CGG 0.606752 tig0018782:-62580 Msa1369410:CDS
GGAACAGATTACATGGATGA+TGG 0.606894 tig0018782:-61163 Msa1369410:CDS
CTAAACTCTACAAAGAAAGG+AGG 0.610072 tig0018782:-61226 Msa1369410:CDS
ACTACTTCATCATAAAGTGA+TGG 0.615191 tig0018782:+62441 None:intergenic
TGAAAAGTATCTTGGAATGC+CGG 0.623758 tig0018782:-61341 Msa1369410:CDS
AACAATTGGGAGGCATATGG+TGG 0.626650 tig0018782:-62348 Msa1369410:CDS
TTGGATGGAAGCCCACATAG+AGG 0.626696 tig0018782:-61368 Msa1369410:CDS
TTCACTCACCACAAAATCCA+GGG 0.626794 tig0018782:+62410 None:intergenic
AGTGGCATCTCTCAGAGCAG+AGG 0.630497 tig0018782:+61059 None:intergenic
GGACGAGTCGACAAGAGGAA+GGG 0.630959 tig0018782:-62559 Msa1369410:CDS
GAAATCTCTGAGGTGTTGAG+GGG 0.645814 tig0018782:+61659 None:intergenic
AAGTGATGGTGATTTCTGAA+GGG 0.650216 tig0018782:+62455 None:intergenic
TGCTCTGAGAGATGCCACTG+GGG 0.651417 tig0018782:-61055 Msa1369410:CDS
TACAAAGAAAGGAGGTAGTG+GGG 0.655170 tig0018782:-61218 Msa1369410:CDS
CTACTACAAGGACCATGTCA+AGG 0.659291 tig0018782:-62238 Msa1369410:intron
GGAGGAAGCTGAATGGCAGA+TGG 0.662800 tig0018782:-62670 Msa1369410:CDS
GCTAGGAACTTACCTTGACA+TGG 0.669271 tig0018782:+62226 None:intergenic
TGATATCCCTTCAATCCACA+AGG 0.672007 tig0018782:-61099 Msa1369410:CDS
AAAGCACAGTATGTCAAGTG+GGG 0.694927 tig0018782:-62324 Msa1369410:CDS
TACCTGTAACGTATCACCAG+AGG 0.699288 tig0018782:+62013 None:intergenic
GGGTTGAACTGAAATCTCTG+AGG 0.711750 tig0018782:+61649 None:intergenic
GAGGAGTCAGAGGTGCATCG+AGG 0.724283 tig0018782:+62032 None:intergenic
GTTGCAAAATGTAGTCTACG+AGG 0.776748 tig0018782:-61014 Msa1369410:CDS
AGTCGACACCTAGAACCTGG+TGG 0.780190 tig0018782:+61584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAATATATATGGTTTT+TGG - tig0018782:60912-60931 Msa1369410:three_prime_UTR 10.0%
!!! GGAAATTTTTATTAATAAAT+TGG + tig0018782:61730-61749 None:intergenic 10.0%
!!! AATAATTAATGTTTTTTCTA+CGG - tig0018782:62894-62913 Msa1369410:CDS 10.0%
!!! AATTAAATATATATGGTTTT+TGG - tig0018782:60912-60931 Msa1369410:three_prime_UTR 10.0%
!!! GGAAATTTTTATTAATAAAT+TGG + tig0018782:61730-61749 None:intergenic 10.0%
!!! AATAATTAATGTTTTTTCTA+CGG - tig0018782:62894-62913 Msa1369410:CDS 10.0%
!! ATTATTATTATTAGAGTCTT+AGG - tig0018782:60860-60879 Msa1369410:three_prime_UTR 15.0%
!! TGTTAATTCTAATTAACTTT+AGG - tig0018782:60884-60903 Msa1369410:three_prime_UTR 15.0%
!!! AATTAGTTTAAAAGAAAAAC+AGG + tig0018782:61447-61466 None:intergenic 15.0%
!!! GTTTTTCTTTTAAACTAATT+TGG - tig0018782:61447-61466 Msa1369410:intron 15.0%
!! TTAGATGTTTAAAGAAATAA+TGG + tig0018782:62164-62183 None:intergenic 15.0%
!!! ATTTTTTCAAAAACAAAAGT+TGG + tig0018782:62841-62860 None:intergenic 15.0%
!! TTTGAAAAAATCAAAAGTTA+AGG - tig0018782:62850-62869 Msa1369410:CDS 15.0%
!!! ATAATTAATGTTTTTTCTAC+GGG - tig0018782:62895-62914 Msa1369410:CDS 15.0%
!! ATTATTATTATTAGAGTCTT+AGG - tig0018782:60860-60879 Msa1369410:three_prime_UTR 15.0%
!! TGTTAATTCTAATTAACTTT+AGG - tig0018782:60884-60903 Msa1369410:three_prime_UTR 15.0%
!!! AATTAGTTTAAAAGAAAAAC+AGG + tig0018782:61447-61466 None:intergenic 15.0%
!!! GTTTTTCTTTTAAACTAATT+TGG - tig0018782:61447-61466 Msa1369410:intron 15.0%
!! TTAGATGTTTAAAGAAATAA+TGG + tig0018782:62164-62183 None:intergenic 15.0%
!!! ATTTTTTCAAAAACAAAAGT+TGG + tig0018782:62841-62860 None:intergenic 15.0%
!! TTTGAAAAAATCAAAAGTTA+AGG - tig0018782:62850-62869 Msa1369410:CDS 15.0%
!!! ATAATTAATGTTTTTTCTAC+GGG - tig0018782:62895-62914 Msa1369410:CDS 15.0%
!! GGCACTTAATTAAATATATA+TGG - tig0018782:60905-60924 Msa1369410:three_prime_UTR 20.0%
!!! TATATATGGTTTTTGGTTTA+AGG - tig0018782:60919-60938 Msa1369410:three_prime_UTR 20.0%
!!! TATTATCATTGGTTAACAAT+TGG - tig0018782:61258-61277 Msa1369410:CDS 20.0%
!!! ATTATCATTGGTTAACAATT+GGG - tig0018782:61259-61278 Msa1369410:CDS 20.0%
!! TGGAAAAAAATTAGAAAAGA+GGG + tig0018782:61751-61770 None:intergenic 20.0%
!! ATGGAAAAAAATTAGAAAAG+AGG + tig0018782:61752-61771 None:intergenic 20.0%
!! GCAATATTATTATTGTGTTT+GGG + tig0018782:61790-61809 None:intergenic 20.0%
!! TGCAATATTATTATTGTGTT+TGG + tig0018782:61791-61810 None:intergenic 20.0%
!! AATATATTCAATTGAGTTCA+AGG + tig0018782:61852-61871 None:intergenic 20.0%
!! CTCAATTGAATATATTCTTT+AGG - tig0018782:61856-61875 Msa1369410:intron 20.0%
!!! TTGAATATATTCTTTAGGAA+TGG - tig0018782:61861-61880 Msa1369410:intron 20.0%
!! ATGTTTAAAGAAATAATGGT+TGG + tig0018782:62160-62179 None:intergenic 20.0%
!!! AAAAACAATTATTTTGAGAC+AGG - tig0018782:62739-62758 Msa1369410:intron 20.0%
!!! AAAACAATTATTTTGAGACA+GGG - tig0018782:62740-62759 Msa1369410:intron 20.0%
!! GGCACTTAATTAAATATATA+TGG - tig0018782:60905-60924 Msa1369410:three_prime_UTR 20.0%
!!! TATATATGGTTTTTGGTTTA+AGG - tig0018782:60919-60938 Msa1369410:three_prime_UTR 20.0%
!!! TATTATCATTGGTTAACAAT+TGG - tig0018782:61258-61277 Msa1369410:CDS 20.0%
!!! ATTATCATTGGTTAACAATT+GGG - tig0018782:61259-61278 Msa1369410:CDS 20.0%
!! TGGAAAAAAATTAGAAAAGA+GGG + tig0018782:61751-61770 None:intergenic 20.0%
!! ATGGAAAAAAATTAGAAAAG+AGG + tig0018782:61752-61771 None:intergenic 20.0%
!! GCAATATTATTATTGTGTTT+GGG + tig0018782:61790-61809 None:intergenic 20.0%
!! TGCAATATTATTATTGTGTT+TGG + tig0018782:61791-61810 None:intergenic 20.0%
!! AATATATTCAATTGAGTTCA+AGG + tig0018782:61852-61871 None:intergenic 20.0%
!! CTCAATTGAATATATTCTTT+AGG - tig0018782:61856-61875 Msa1369410:intron 20.0%
!!! TTGAATATATTCTTTAGGAA+TGG - tig0018782:61861-61880 Msa1369410:intron 20.0%
!! ATGTTTAAAGAAATAATGGT+TGG + tig0018782:62160-62179 None:intergenic 20.0%
!!! AAAAACAATTATTTTGAGAC+AGG - tig0018782:62739-62758 Msa1369410:intron 20.0%
!!! AAAACAATTATTTTGAGACA+GGG - tig0018782:62740-62759 Msa1369410:intron 20.0%
! GAAAGGAAATAACACATAAT+TGG + tig0018782:60719-60738 None:intergenic 25.0%
! AATAGTGAGAAAAATGAGAA+AGG + tig0018782:60736-60755 None:intergenic 25.0%
! CAAATTCCATCTTAACTTAT+GGG - tig0018782:60829-60848 Msa1369410:three_prime_UTR 25.0%
! TTGAATCCATTTACATAGAA+AGG + tig0018782:61014-61033 None:intergenic 25.0%
! TTATGATGAAGTAGTATTCA+AGG - tig0018782:61187-61206 Msa1369410:CDS 25.0%
! AATCAGACTCATATTATCAT+TGG - tig0018782:61247-61266 Msa1369410:CDS 25.0%
! GATCAATCAAGAAATAGTAT+AGG + tig0018782:61475-61494 None:intergenic 25.0%
! ACTCACAAATATCACTTATA+AGG - tig0018782:61527-61546 Msa1369410:intron 25.0%
! TTGTTTCAAAGAGTTCAAAT+TGG + tig0018782:61680-61699 None:intergenic 25.0%
! TAATAAATTGGCGCTAAAAA+GGG + tig0018782:61718-61737 None:intergenic 25.0%
! TTAATAAATTGGCGCTAAAA+AGG + tig0018782:61719-61738 None:intergenic 25.0%
!!! TGGGTTTCTTTTTGAAAATA+TGG + tig0018782:61771-61790 None:intergenic 25.0%
! TCTTTAAACATCTAACATTC+AGG - tig0018782:62169-62188 Msa1369410:intron 25.0%
! CTATATGTTGAATTATAACC+AGG + tig0018782:62340-62359 None:intergenic 25.0%
! ATTCTAAACTCTACAAAGAA+AGG - tig0018782:62391-62410 Msa1369410:CDS 25.0%
!!! AGTTAAGTTGGAATAAATAC+AGG - tig0018782:62638-62657 Msa1369410:CDS 25.0%
! TCTTCGTTTATAAAAGAAGT+GGG + tig0018782:62782-62801 None:intergenic 25.0%
! TTCTTCGTTTATAAAAGAAG+TGG + tig0018782:62783-62802 None:intergenic 25.0%
! GAAAGGAAATAACACATAAT+TGG + tig0018782:60719-60738 None:intergenic 25.0%
! AATAGTGAGAAAAATGAGAA+AGG + tig0018782:60736-60755 None:intergenic 25.0%
! CAAATTCCATCTTAACTTAT+GGG - tig0018782:60829-60848 Msa1369410:three_prime_UTR 25.0%
! TTGAATCCATTTACATAGAA+AGG + tig0018782:61014-61033 None:intergenic 25.0%
! TTATGATGAAGTAGTATTCA+AGG - tig0018782:61187-61206 Msa1369410:CDS 25.0%
! AATCAGACTCATATTATCAT+TGG - tig0018782:61247-61266 Msa1369410:CDS 25.0%
! GATCAATCAAGAAATAGTAT+AGG + tig0018782:61475-61494 None:intergenic 25.0%
! ACTCACAAATATCACTTATA+AGG - tig0018782:61527-61546 Msa1369410:intron 25.0%
! TTGTTTCAAAGAGTTCAAAT+TGG + tig0018782:61680-61699 None:intergenic 25.0%
! TAATAAATTGGCGCTAAAAA+GGG + tig0018782:61718-61737 None:intergenic 25.0%
! TTAATAAATTGGCGCTAAAA+AGG + tig0018782:61719-61738 None:intergenic 25.0%
!!! TGGGTTTCTTTTTGAAAATA+TGG + tig0018782:61771-61790 None:intergenic 25.0%
! TCTTTAAACATCTAACATTC+AGG - tig0018782:62169-62188 Msa1369410:intron 25.0%
! CTATATGTTGAATTATAACC+AGG + tig0018782:62340-62359 None:intergenic 25.0%
! ATTCTAAACTCTACAAAGAA+AGG - tig0018782:62391-62410 Msa1369410:CDS 25.0%
!!! AGTTAAGTTGGAATAAATAC+AGG - tig0018782:62638-62657 Msa1369410:CDS 25.0%
! TCTTCGTTTATAAAAGAAGT+GGG + tig0018782:62782-62801 None:intergenic 25.0%
! TTCTTCGTTTATAAAAGAAG+TGG + tig0018782:62783-62802 None:intergenic 25.0%
ATGACACTGAATATGAAGAT+TGG - tig0018782:60787-60806 Msa1369410:three_prime_UTR 30.0%
TGACACTGAATATGAAGATT+GGG - tig0018782:60788-60807 Msa1369410:three_prime_UTR 30.0%
CCATAAGTTAAGATGGAATT+TGG + tig0018782:60831-60850 None:intergenic 30.0%
CCAAATTCCATCTTAACTTA+TGG - tig0018782:60828-60847 Msa1369410:three_prime_UTR 30.0%
!!! TTTTGGTTTAAGGAGTGAAA+TGG - tig0018782:60929-60948 Msa1369410:three_prime_UTR 30.0%
ATCCATTTACATAGAAAGGT+TGG + tig0018782:61010-61029 None:intergenic 30.0%
! TAAATGGATTCAACACTTAC+TGG - tig0018782:61021-61040 Msa1369410:CDS 30.0%
ACTACTTCATCATAAAGTGA+TGG + tig0018782:61182-61201 None:intergenic 30.0%
!!! AACAGGAAGCATTAAGTTTT+AGG + tig0018782:61430-61449 None:intergenic 30.0%
! AAGATCCAACAATTTTTGCT+TGG - tig0018782:61550-61569 Msa1369410:intron 30.0%
! AGATCCAACAATTTTTGCTT+GGG - tig0018782:61551-61570 Msa1369410:intron 30.0%
AATAAATTGGCGCTAAAAAG+GGG + tig0018782:61717-61736 None:intergenic 30.0%
TATTCAATTGAGTTCAAGGA+AGG + tig0018782:61848-61867 None:intergenic 30.0%
TTAGGAATGGATAAAAGAGA+TGG - tig0018782:61874-61893 Msa1369410:intron 30.0%
GATATCATGCTTGAAATAGA+AGG + tig0018782:62508-62527 None:intergenic 30.0%
ATGACACTGAATATGAAGAT+TGG - tig0018782:60787-60806 Msa1369410:three_prime_UTR 30.0%
TGACACTGAATATGAAGATT+GGG - tig0018782:60788-60807 Msa1369410:three_prime_UTR 30.0%
CCATAAGTTAAGATGGAATT+TGG + tig0018782:60831-60850 None:intergenic 30.0%
CCAAATTCCATCTTAACTTA+TGG - tig0018782:60828-60847 Msa1369410:three_prime_UTR 30.0%
!!! TTTTGGTTTAAGGAGTGAAA+TGG - tig0018782:60929-60948 Msa1369410:three_prime_UTR 30.0%
ATCCATTTACATAGAAAGGT+TGG + tig0018782:61010-61029 None:intergenic 30.0%
! TAAATGGATTCAACACTTAC+TGG - tig0018782:61021-61040 Msa1369410:CDS 30.0%
ACTACTTCATCATAAAGTGA+TGG + tig0018782:61182-61201 None:intergenic 30.0%
!!! AACAGGAAGCATTAAGTTTT+AGG + tig0018782:61430-61449 None:intergenic 30.0%
! AAGATCCAACAATTTTTGCT+TGG - tig0018782:61550-61569 Msa1369410:intron 30.0%
! AGATCCAACAATTTTTGCTT+GGG - tig0018782:61551-61570 Msa1369410:intron 30.0%
AATAAATTGGCGCTAAAAAG+GGG + tig0018782:61717-61736 None:intergenic 30.0%
TATTCAATTGAGTTCAAGGA+AGG + tig0018782:61848-61867 None:intergenic 30.0%
TTAGGAATGGATAAAAGAGA+TGG - tig0018782:61874-61893 Msa1369410:intron 30.0%
GATATCATGCTTGAAATAGA+AGG + tig0018782:62508-62527 None:intergenic 30.0%
TACGTACCCATAAGTTAAGA+TGG + tig0018782:60838-60857 None:intergenic 35.0%
GACCAACCTTTCTATGTAAA+TGG - tig0018782:61005-61024 Msa1369410:CDS 35.0%
! ATTCAACACTTACTGGTTGA+TGG - tig0018782:61028-61047 Msa1369410:CDS 35.0%
TTCAAACATGCATTCTCAGT+TGG - tig0018782:61095-61114 Msa1369410:CDS 35.0%
TATGACAGTTTGTAGGACTT+GGG - tig0018782:61118-61137 Msa1369410:CDS 35.0%
! AAGTGATGGTGATTTCTGAA+GGG + tig0018782:61168-61187 None:intergenic 35.0%
! AAAGTGATGGTGATTTCTGA+AGG + tig0018782:61169-61188 None:intergenic 35.0%
! ATCATTGGTTAACAATTGGG+AGG - tig0018782:61262-61281 Msa1369410:CDS 35.0%
TGAGAAAAAGTCATCATCAG+AGG + tig0018782:61345-61364 None:intergenic 35.0%
!! TTTTAGGTACATCTCAAGCT+AGG + tig0018782:61414-61433 None:intergenic 35.0%
ATAAATTGGCGCTAAAAAGG+GGG + tig0018782:61716-61735 None:intergenic 35.0%
!! ATTGGCCTAGAAGGATTTTA+TGG - tig0018782:61938-61957 Msa1369410:intron 35.0%
CCTGTTGAGCATATGAATTT+GGG + tig0018782:61994-62013 None:intergenic 35.0%
ACCTGTTGAGCATATGAATT+TGG + tig0018782:61995-62014 None:intergenic 35.0%
AATTCATATGCTCAACAGGT+TGG - tig0018782:61995-62014 Msa1369410:intron 35.0%
! TGATTTTATCAGAAACCACC+AGG - tig0018782:62021-62040 Msa1369410:CDS 35.0%
CTCATATATATCCAGACTCT+TGG - tig0018782:62068-62087 Msa1369410:CDS 35.0%
ATATATCCAGACTCTTGGTA+AGG - tig0018782:62073-62092 Msa1369410:CDS 35.0%
TACTTAAGTAGAAGCCATCA+AGG + tig0018782:62105-62124 None:intergenic 35.0%
GATTGTGAAATCCTTCAACA+AGG + tig0018782:62199-62218 None:intergenic 35.0%
AAGACTTCACAAATGGGATA+TGG + tig0018782:62234-62253 None:intergenic 35.0%
ATATCCCATTTGTGAAGTCT+TGG - tig0018782:62233-62252 Msa1369410:intron 35.0%
!! TGAAAAGTATCTTGGAATGC+CGG - tig0018782:62279-62298 Msa1369410:CDS 35.0%
CTAAACTCTACAAAGAAAGG+AGG - tig0018782:62394-62413 Msa1369410:CDS 35.0%
TACGTACCCATAAGTTAAGA+TGG + tig0018782:60838-60857 None:intergenic 35.0%
GACCAACCTTTCTATGTAAA+TGG - tig0018782:61005-61024 Msa1369410:CDS 35.0%
! ATTCAACACTTACTGGTTGA+TGG - tig0018782:61028-61047 Msa1369410:CDS 35.0%
TTCAAACATGCATTCTCAGT+TGG - tig0018782:61095-61114 Msa1369410:CDS 35.0%
TATGACAGTTTGTAGGACTT+GGG - tig0018782:61118-61137 Msa1369410:CDS 35.0%
! AAGTGATGGTGATTTCTGAA+GGG + tig0018782:61168-61187 None:intergenic 35.0%
! AAAGTGATGGTGATTTCTGA+AGG + tig0018782:61169-61188 None:intergenic 35.0%
! ATCATTGGTTAACAATTGGG+AGG - tig0018782:61262-61281 Msa1369410:CDS 35.0%
TGAGAAAAAGTCATCATCAG+AGG + tig0018782:61345-61364 None:intergenic 35.0%
!! TTTTAGGTACATCTCAAGCT+AGG + tig0018782:61414-61433 None:intergenic 35.0%
ATAAATTGGCGCTAAAAAGG+GGG + tig0018782:61716-61735 None:intergenic 35.0%
!! ATTGGCCTAGAAGGATTTTA+TGG - tig0018782:61938-61957 Msa1369410:intron 35.0%
CCTGTTGAGCATATGAATTT+GGG + tig0018782:61994-62013 None:intergenic 35.0%
ACCTGTTGAGCATATGAATT+TGG + tig0018782:61995-62014 None:intergenic 35.0%
AATTCATATGCTCAACAGGT+TGG - tig0018782:61995-62014 Msa1369410:intron 35.0%
! TGATTTTATCAGAAACCACC+AGG - tig0018782:62021-62040 Msa1369410:CDS 35.0%
CTCATATATATCCAGACTCT+TGG - tig0018782:62068-62087 Msa1369410:CDS 35.0%
ATATATCCAGACTCTTGGTA+AGG - tig0018782:62073-62092 Msa1369410:CDS 35.0%
TACTTAAGTAGAAGCCATCA+AGG + tig0018782:62105-62124 None:intergenic 35.0%
GATTGTGAAATCCTTCAACA+AGG + tig0018782:62199-62218 None:intergenic 35.0%
AAGACTTCACAAATGGGATA+TGG + tig0018782:62234-62253 None:intergenic 35.0%
ATATCCCATTTGTGAAGTCT+TGG - tig0018782:62233-62252 Msa1369410:intron 35.0%
!! TGAAAAGTATCTTGGAATGC+CGG - tig0018782:62279-62298 Msa1369410:CDS 35.0%
CTAAACTCTACAAAGAAAGG+AGG - tig0018782:62394-62413 Msa1369410:CDS 35.0%
TGGCTGGGTAACATAACATA+TGG - tig0018782:60674-60693 Msa1369410:three_prime_UTR 40.0%
ATCAAATGCAGTTGAGCTGA+AGG + tig0018782:60769-60788 None:intergenic 40.0%
TGGTTTAAGGAGTGAAATGG+AGG - tig0018782:60932-60951 Msa1369410:three_prime_UTR 40.0%
GTTGGTCATTCACTGCAAAT+TGG + tig0018782:60992-61011 None:intergenic 40.0%
! CAGTTGGTATGACAGTTTGT+AGG - tig0018782:61111-61130 Msa1369410:CDS 40.0%
GTATGACAGTTTGTAGGACT+TGG - tig0018782:61117-61136 Msa1369410:CDS 40.0%
TTCACTCACCACAAAATCCA+GGG + tig0018782:61213-61232 None:intergenic 40.0%
! GTTAACAATTGGGAGGCATA+TGG - tig0018782:61269-61288 Msa1369410:CDS 40.0%
CAAAGCACAGTATGTCAAGT+GGG - tig0018782:61295-61314 Msa1369410:CDS 40.0%
AAAGCACAGTATGTCAAGTG+GGG - tig0018782:61296-61315 Msa1369410:CDS 40.0%
CATCATCAGAGGTCAAGTTA+AGG + tig0018782:61334-61353 None:intergenic 40.0%
AGCTCCCAAGCAAAAATTGT+TGG + tig0018782:61558-61577 None:intergenic 40.0%
!! TGAAATCTCTGAGGTGTTGA+GGG + tig0018782:61965-61984 None:intergenic 40.0%
CCCAAATTCATATGCTCAAC+AGG - tig0018782:61991-62010 Msa1369410:intron 40.0%
TAAGTAGAAGCCATCAAGGA+AGG + tig0018782:62101-62120 None:intergenic 40.0%
ATTCAGGCTTACCTTGTTGA+AGG - tig0018782:62185-62204 Msa1369410:intron 40.0%
CCATCCAAGACTTCACAAAT+GGG + tig0018782:62240-62259 None:intergenic 40.0%
TCCATCCAAGACTTCACAAA+TGG + tig0018782:62241-62260 None:intergenic 40.0%
! CTTTTCAGCATCCTCTATGT+GGG + tig0018782:62266-62285 None:intergenic 40.0%
! ACTTTTCAGCATCCTCTATG+TGG + tig0018782:62267-62286 None:intergenic 40.0%
!! GAGGATGCTGAAAAGTATCT+TGG - tig0018782:62271-62290 Msa1369410:CDS 40.0%
CCAAACTCACCAAAAACAAC+CGG + tig0018782:62301-62320 None:intergenic 40.0%
TCTACAAAGAAAGGAGGTAG+TGG - tig0018782:62400-62419 Msa1369410:CDS 40.0%
CTACAAAGAAAGGAGGTAGT+GGG - tig0018782:62401-62420 Msa1369410:CDS 40.0%
TACAAAGAAAGGAGGTAGTG+GGG - tig0018782:62402-62421 Msa1369410:CDS 40.0%
TCCTGATGGAACAGATTACA+TGG - tig0018782:62450-62469 Msa1369410:CDS 40.0%
TCCATGTAATCTGTTCCATC+AGG + tig0018782:62454-62473 None:intergenic 40.0%
GGAACAGATTACATGGATGA+TGG - tig0018782:62457-62476 Msa1369410:CDS 40.0%
TGATATCCCTTCAATCCACA+AGG - tig0018782:62521-62540 Msa1369410:CDS 40.0%
! TTTTCTTCTTACAACCCCAG+TGG + tig0018782:62582-62601 None:intergenic 40.0%
CTGGGGTTGTAAGAAGAAAA+AGG - tig0018782:62582-62601 Msa1369410:CDS 40.0%
GTTGCAAAATGTAGTCTACG+AGG - tig0018782:62606-62625 Msa1369410:CDS 40.0%
AAATGTAGTCTACGAGGATG+AGG - tig0018782:62612-62631 Msa1369410:CDS 40.0%
AGGATGAGGAGTAGTTAAGT+TGG - tig0018782:62626-62645 Msa1369410:CDS 40.0%
TGGCTGGGTAACATAACATA+TGG - tig0018782:60674-60693 Msa1369410:three_prime_UTR 40.0%
ATCAAATGCAGTTGAGCTGA+AGG + tig0018782:60769-60788 None:intergenic 40.0%
TGGTTTAAGGAGTGAAATGG+AGG - tig0018782:60932-60951 Msa1369410:three_prime_UTR 40.0%
GTTGGTCATTCACTGCAAAT+TGG + tig0018782:60992-61011 None:intergenic 40.0%
! CAGTTGGTATGACAGTTTGT+AGG - tig0018782:61111-61130 Msa1369410:CDS 40.0%
GTATGACAGTTTGTAGGACT+TGG - tig0018782:61117-61136 Msa1369410:CDS 40.0%
TTCACTCACCACAAAATCCA+GGG + tig0018782:61213-61232 None:intergenic 40.0%
! GTTAACAATTGGGAGGCATA+TGG - tig0018782:61269-61288 Msa1369410:CDS 40.0%
CAAAGCACAGTATGTCAAGT+GGG - tig0018782:61295-61314 Msa1369410:CDS 40.0%
AAAGCACAGTATGTCAAGTG+GGG - tig0018782:61296-61315 Msa1369410:CDS 40.0%
CATCATCAGAGGTCAAGTTA+AGG + tig0018782:61334-61353 None:intergenic 40.0%
AGCTCCCAAGCAAAAATTGT+TGG + tig0018782:61558-61577 None:intergenic 40.0%
!! TGAAATCTCTGAGGTGTTGA+GGG + tig0018782:61965-61984 None:intergenic 40.0%
CCCAAATTCATATGCTCAAC+AGG - tig0018782:61991-62010 Msa1369410:intron 40.0%
TAAGTAGAAGCCATCAAGGA+AGG + tig0018782:62101-62120 None:intergenic 40.0%
ATTCAGGCTTACCTTGTTGA+AGG - tig0018782:62185-62204 Msa1369410:intron 40.0%
CCATCCAAGACTTCACAAAT+GGG + tig0018782:62240-62259 None:intergenic 40.0%
TCCATCCAAGACTTCACAAA+TGG + tig0018782:62241-62260 None:intergenic 40.0%
! CTTTTCAGCATCCTCTATGT+GGG + tig0018782:62266-62285 None:intergenic 40.0%
! ACTTTTCAGCATCCTCTATG+TGG + tig0018782:62267-62286 None:intergenic 40.0%
!! GAGGATGCTGAAAAGTATCT+TGG - tig0018782:62271-62290 Msa1369410:CDS 40.0%
CCAAACTCACCAAAAACAAC+CGG + tig0018782:62301-62320 None:intergenic 40.0%
TCTACAAAGAAAGGAGGTAG+TGG - tig0018782:62400-62419 Msa1369410:CDS 40.0%
CTACAAAGAAAGGAGGTAGT+GGG - tig0018782:62401-62420 Msa1369410:CDS 40.0%
TACAAAGAAAGGAGGTAGTG+GGG - tig0018782:62402-62421 Msa1369410:CDS 40.0%
TCCTGATGGAACAGATTACA+TGG - tig0018782:62450-62469 Msa1369410:CDS 40.0%
TCCATGTAATCTGTTCCATC+AGG + tig0018782:62454-62473 None:intergenic 40.0%
GGAACAGATTACATGGATGA+TGG - tig0018782:62457-62476 Msa1369410:CDS 40.0%
TGATATCCCTTCAATCCACA+AGG - tig0018782:62521-62540 Msa1369410:CDS 40.0%
! TTTTCTTCTTACAACCCCAG+TGG + tig0018782:62582-62601 None:intergenic 40.0%
CTGGGGTTGTAAGAAGAAAA+AGG - tig0018782:62582-62601 Msa1369410:CDS 40.0%
GTTGCAAAATGTAGTCTACG+AGG - tig0018782:62606-62625 Msa1369410:CDS 40.0%
AAATGTAGTCTACGAGGATG+AGG - tig0018782:62612-62631 Msa1369410:CDS 40.0%
AGGATGAGGAGTAGTTAAGT+TGG - tig0018782:62626-62645 Msa1369410:CDS 40.0%
GTGAAATGGAGGAAGCTGAA+TGG - tig0018782:60943-60962 Msa1369410:three_prime_UTR 45.0%
TGGCAGATGGTGCAAAAGAA+AGG - tig0018782:60963-60982 Msa1369410:three_prime_UTR 45.0%
!! CTGGTTGATGGTATTTGCTG+CGG - tig0018782:61040-61059 Msa1369410:CDS 45.0%
TCTCCATTGGCCATCATTGA+AGG + tig0018782:61144-61163 None:intergenic 45.0%
! ATTTCTGAAGGGCTCTCCAT+TGG + tig0018782:61157-61176 None:intergenic 45.0%
TGAAGTAGTATTCAAGGCCC+TGG - tig0018782:61193-61212 Msa1369410:CDS 45.0%
! ATTCAAGGCCCTGGATTTTG+TGG - tig0018782:61202-61221 Msa1369410:CDS 45.0%
CTTCACTCACCACAAAATCC+AGG + tig0018782:61214-61233 None:intergenic 45.0%
! AACAATTGGGAGGCATATGG+TGG - tig0018782:61272-61291 Msa1369410:CDS 45.0%
GCAAAGCACAGTATGTCAAG+TGG - tig0018782:61294-61313 Msa1369410:CDS 45.0%
TTCTCACATCCAACTCTCAG+AGG - tig0018782:61359-61378 Msa1369410:CDS 45.0%
! TTGTAGTAGCCTCTGAGAGT+TGG + tig0018782:61371-61390 None:intergenic 45.0%
AACTCTCAGAGGCTACTACA+AGG - tig0018782:61370-61389 Msa1369410:CDS 45.0%
CTACTACAAGGACCATGTCA+AGG - tig0018782:61382-61401 Msa1369410:CDS 45.0%
GCTAGGAACTTACCTTGACA+TGG + tig0018782:61397-61416 None:intergenic 45.0%
TACCTGTAACGTATCACCAG+AGG + tig0018782:61610-61629 None:intergenic 45.0%
CCAATCTCCAGTAGGTGTTT+CGG + tig0018782:61923-61942 None:intergenic 45.0%
AGGGGCCATAAAATCCTTCT+AGG + tig0018782:61946-61965 None:intergenic 45.0%
!! GAAATCTCTGAGGTGTTGAG+GGG + tig0018782:61964-61983 None:intergenic 45.0%
!! CTGAAATCTCTGAGGTGTTG+AGG + tig0018782:61966-61985 None:intergenic 45.0%
GGGTTGAACTGAAATCTCTG+AGG + tig0018782:61974-61993 None:intergenic 45.0%
ATCAGAAACCACCAGGTTCT+AGG - tig0018782:62028-62047 Msa1369410:CDS 45.0%
AAGGAACCTTACCAAGAGTC+TGG + tig0018782:62082-62101 None:intergenic 45.0%
TGGTAAGGTTCCTTCCTTGA+TGG - tig0018782:62088-62107 Msa1369410:CDS 45.0%
CCCATTTGTGAAGTCTTGGA+TGG - tig0018782:62237-62256 Msa1369410:intron 45.0%
!! CTTGGAATGCCGGTTGTTTT+TGG - tig0018782:62289-62308 Msa1369410:CDS 45.0%
!!! CCGGTTGTTTTTGGTGAGTT+TGG - tig0018782:62298-62317 Msa1369410:CDS 45.0%
GGTGTATCTGCAAAAGATCC+TGG - tig0018782:62319-62338 Msa1369410:CDS 45.0%
CAGGAAAGAACTGCCACAAA+AGG + tig0018782:62435-62454 None:intergenic 45.0%
TTGTGGCAGTTCTTTCCTGA+TGG - tig0018782:62436-62455 Msa1369410:CDS 45.0%
AGAGCAGAGGGAGTTGAATA+GGG + tig0018782:62551-62570 None:intergenic 45.0%
GTGAAATGGAGGAAGCTGAA+TGG - tig0018782:60943-60962 Msa1369410:three_prime_UTR 45.0%
TGGCAGATGGTGCAAAAGAA+AGG - tig0018782:60963-60982 Msa1369410:three_prime_UTR 45.0%
!! CTGGTTGATGGTATTTGCTG+CGG - tig0018782:61040-61059 Msa1369410:CDS 45.0%
TCTCCATTGGCCATCATTGA+AGG + tig0018782:61144-61163 None:intergenic 45.0%
! ATTTCTGAAGGGCTCTCCAT+TGG + tig0018782:61157-61176 None:intergenic 45.0%
TGAAGTAGTATTCAAGGCCC+TGG - tig0018782:61193-61212 Msa1369410:CDS 45.0%
! ATTCAAGGCCCTGGATTTTG+TGG - tig0018782:61202-61221 Msa1369410:CDS 45.0%
CTTCACTCACCACAAAATCC+AGG + tig0018782:61214-61233 None:intergenic 45.0%
! AACAATTGGGAGGCATATGG+TGG - tig0018782:61272-61291 Msa1369410:CDS 45.0%
GCAAAGCACAGTATGTCAAG+TGG - tig0018782:61294-61313 Msa1369410:CDS 45.0%
TTCTCACATCCAACTCTCAG+AGG - tig0018782:61359-61378 Msa1369410:CDS 45.0%
! TTGTAGTAGCCTCTGAGAGT+TGG + tig0018782:61371-61390 None:intergenic 45.0%
AACTCTCAGAGGCTACTACA+AGG - tig0018782:61370-61389 Msa1369410:CDS 45.0%
CTACTACAAGGACCATGTCA+AGG - tig0018782:61382-61401 Msa1369410:CDS 45.0%
GCTAGGAACTTACCTTGACA+TGG + tig0018782:61397-61416 None:intergenic 45.0%
TACCTGTAACGTATCACCAG+AGG + tig0018782:61610-61629 None:intergenic 45.0%
CCAATCTCCAGTAGGTGTTT+CGG + tig0018782:61923-61942 None:intergenic 45.0%
AGGGGCCATAAAATCCTTCT+AGG + tig0018782:61946-61965 None:intergenic 45.0%
!! GAAATCTCTGAGGTGTTGAG+GGG + tig0018782:61964-61983 None:intergenic 45.0%
!! CTGAAATCTCTGAGGTGTTG+AGG + tig0018782:61966-61985 None:intergenic 45.0%
GGGTTGAACTGAAATCTCTG+AGG + tig0018782:61974-61993 None:intergenic 45.0%
ATCAGAAACCACCAGGTTCT+AGG - tig0018782:62028-62047 Msa1369410:CDS 45.0%
AAGGAACCTTACCAAGAGTC+TGG + tig0018782:62082-62101 None:intergenic 45.0%
TGGTAAGGTTCCTTCCTTGA+TGG - tig0018782:62088-62107 Msa1369410:CDS 45.0%
CCCATTTGTGAAGTCTTGGA+TGG - tig0018782:62237-62256 Msa1369410:intron 45.0%
!! CTTGGAATGCCGGTTGTTTT+TGG - tig0018782:62289-62308 Msa1369410:CDS 45.0%
!!! CCGGTTGTTTTTGGTGAGTT+TGG - tig0018782:62298-62317 Msa1369410:CDS 45.0%
GGTGTATCTGCAAAAGATCC+TGG - tig0018782:62319-62338 Msa1369410:CDS 45.0%
CAGGAAAGAACTGCCACAAA+AGG + tig0018782:62435-62454 None:intergenic 45.0%
TTGTGGCAGTTCTTTCCTGA+TGG - tig0018782:62436-62455 Msa1369410:CDS 45.0%
AGAGCAGAGGGAGTTGAATA+GGG + tig0018782:62551-62570 None:intergenic 45.0%
AGGACTTGGGCCTTCAATGA+TGG - tig0018782:61131-61150 Msa1369410:CDS 50.0%
CTCCTCTGGTGATACGTTAC+AGG - tig0018782:61605-61624 Msa1369410:CDS 50.0%
CGTTGATCCGAAACACCTAC+TGG - tig0018782:61913-61932 Msa1369410:intron 50.0%
CCGAAACACCTACTGGAGAT+TGG - tig0018782:61920-61939 Msa1369410:intron 50.0%
CTTCTAGGCCAATCTCCAGT+AGG + tig0018782:61931-61950 None:intergenic 50.0%
!! CTACTGGAGATTGGCCTAGA+AGG - tig0018782:61929-61948 Msa1369410:intron 50.0%
CAAAGTCGACACCTAGAACC+TGG + tig0018782:62042-62061 None:intergenic 50.0%
TTGGATGGAAGCCCACATAG+AGG - tig0018782:62252-62271 Msa1369410:CDS 50.0%
! GGCAAGCCTTGTGGATTGAA+GGG + tig0018782:62530-62549 None:intergenic 50.0%
GTTGAATAGGGCAAGCCTTG+TGG + tig0018782:62539-62558 None:intergenic 50.0%
CAGAGCAGAGGGAGTTGAAT+AGG + tig0018782:62552-62571 None:intergenic 50.0%
AGGACTTGGGCCTTCAATGA+TGG - tig0018782:61131-61150 Msa1369410:CDS 50.0%
CTCCTCTGGTGATACGTTAC+AGG - tig0018782:61605-61624 Msa1369410:CDS 50.0%
CGTTGATCCGAAACACCTAC+TGG - tig0018782:61913-61932 Msa1369410:intron 50.0%
CCGAAACACCTACTGGAGAT+TGG - tig0018782:61920-61939 Msa1369410:intron 50.0%
CTTCTAGGCCAATCTCCAGT+AGG + tig0018782:61931-61950 None:intergenic 50.0%
!! CTACTGGAGATTGGCCTAGA+AGG - tig0018782:61929-61948 Msa1369410:intron 50.0%
CAAAGTCGACACCTAGAACC+TGG + tig0018782:62042-62061 None:intergenic 50.0%
TTGGATGGAAGCCCACATAG+AGG - tig0018782:62252-62271 Msa1369410:CDS 50.0%
! GGCAAGCCTTGTGGATTGAA+GGG + tig0018782:62530-62549 None:intergenic 50.0%
GTTGAATAGGGCAAGCCTTG+TGG + tig0018782:62539-62558 None:intergenic 50.0%
CAGAGCAGAGGGAGTTGAAT+AGG + tig0018782:62552-62571 None:intergenic 50.0%
GGAGGAAGCTGAATGGCAGA+TGG - tig0018782:60950-60969 Msa1369410:three_prime_UTR 55.0%
GGACGAGTCGACAAGAGGAA+GGG - tig0018782:61061-61080 Msa1369410:CDS 55.0%
GACAAGAGGAAGGGTCACTC+AGG - tig0018782:61070-61089 Msa1369410:CDS 55.0%
GGGCCTTCAATGATGGCCAA+TGG - tig0018782:61138-61157 Msa1369410:CDS 55.0%
CGTATCACCAGAGGAGTCAG+AGG + tig0018782:61601-61620 None:intergenic 55.0%
AGTCGACACCTAGAACCTGG+TGG + tig0018782:62039-62058 None:intergenic 55.0%
!! AAGAAAGGAGGTAGTGGGGC+TGG - tig0018782:62406-62425 Msa1369410:CDS 55.0%
! GGGCAAGCCTTGTGGATTGA+AGG + tig0018782:62531-62550 None:intergenic 55.0%
GTGGCATCTCTCAGAGCAGA+GGG + tig0018782:62563-62582 None:intergenic 55.0%
AGTGGCATCTCTCAGAGCAG+AGG + tig0018782:62564-62583 None:intergenic 55.0%
!! TCTGCTCTGAGAGATGCCAC+TGG - tig0018782:62563-62582 Msa1369410:CDS 55.0%
!! CTGCTCTGAGAGATGCCACT+GGG - tig0018782:62564-62583 Msa1369410:CDS 55.0%
!! TGCTCTGAGAGATGCCACTG+GGG - tig0018782:62565-62584 Msa1369410:CDS 55.0%
GGAGGAAGCTGAATGGCAGA+TGG - tig0018782:60950-60969 Msa1369410:three_prime_UTR 55.0%
GGACGAGTCGACAAGAGGAA+GGG - tig0018782:61061-61080 Msa1369410:CDS 55.0%
GACAAGAGGAAGGGTCACTC+AGG - tig0018782:61070-61089 Msa1369410:CDS 55.0%
GGGCCTTCAATGATGGCCAA+TGG - tig0018782:61138-61157 Msa1369410:CDS 55.0%
CGTATCACCAGAGGAGTCAG+AGG + tig0018782:61601-61620 None:intergenic 55.0%
AGTCGACACCTAGAACCTGG+TGG + tig0018782:62039-62058 None:intergenic 55.0%
!! AAGAAAGGAGGTAGTGGGGC+TGG - tig0018782:62406-62425 Msa1369410:CDS 55.0%
! GGGCAAGCCTTGTGGATTGA+AGG + tig0018782:62531-62550 None:intergenic 55.0%
GTGGCATCTCTCAGAGCAGA+GGG + tig0018782:62563-62582 None:intergenic 55.0%
AGTGGCATCTCTCAGAGCAG+AGG + tig0018782:62564-62583 None:intergenic 55.0%
!! TCTGCTCTGAGAGATGCCAC+TGG - tig0018782:62563-62582 Msa1369410:CDS 55.0%
!! CTGCTCTGAGAGATGCCACT+GGG - tig0018782:62564-62583 Msa1369410:CDS 55.0%
!! TGCTCTGAGAGATGCCACTG+GGG - tig0018782:62565-62584 Msa1369410:CDS 55.0%
CGGACGAGTCGACAAGAGGA+AGG - tig0018782:61060-61079 Msa1369410:CDS 60.0%
GTCAAGTGGGGCAATGCTGC+TGG - tig0018782:61308-61327 Msa1369410:CDS 60.0%
! GAGGAGTCAGAGGTGCATCG+AGG + tig0018782:61591-61610 None:intergenic 60.0%
CGATGCACCTCTGACTCCTC+TGG - tig0018782:61591-61610 Msa1369410:CDS 60.0%
! GTGGGGCTGGAAGCCTTTTG+TGG - tig0018782:62419-62438 Msa1369410:CDS 60.0%
CGGACGAGTCGACAAGAGGA+AGG - tig0018782:61060-61079 Msa1369410:CDS 60.0%
GTCAAGTGGGGCAATGCTGC+TGG - tig0018782:61308-61327 Msa1369410:CDS 60.0%
! GAGGAGTCAGAGGTGCATCG+AGG + tig0018782:61591-61610 None:intergenic 60.0%
CGATGCACCTCTGACTCCTC+TGG - tig0018782:61591-61610 Msa1369410:CDS 60.0%
! GTGGGGCTGGAAGCCTTTTG+TGG - tig0018782:62419-62438 Msa1369410:CDS 60.0%
GCTGCGGACGAGTCGACAAG+AGG - tig0018782:61056-61075 Msa1369410:CDS 65.0%
GCTGCGGACGAGTCGACAAG+AGG - tig0018782:61056-61075 Msa1369410:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0018782 gene 60662 62980 60662 ID=Msa1369410;Name=Msa1369410
tig0018782 mRNA 60662 62980 60662 ID=Msa1369410-mRNA-1;Parent=Msa1369410;Name=Msa1369410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=31|1|1|1|1|1|5|341|462
tig0018782 exon 60662 61435 60662 ID=Msa1369410-mRNA-1:exon:1085;Parent=Msa1369410-mRNA-1
tig0018782 exon 61553 61764 61553 ID=Msa1369410-mRNA-1:exon:1084;Parent=Msa1369410-mRNA-1
tig0018782 exon 62016 62138 62016 ID=Msa1369410-mRNA-1:exon:1083;Parent=Msa1369410-mRNA-1
tig0018782 exon 62239 62701 62239 ID=Msa1369410-mRNA-1:exon:1082;Parent=Msa1369410-mRNA-1
tig0018782 exon 62792 62980 62792 ID=Msa1369410-mRNA-1:exon:1081;Parent=Msa1369410-mRNA-1
tig0018782 five_prime_UTR 62950 62980 62950 ID=Msa1369410-mRNA-1:five_prime_utr;Parent=Msa1369410-mRNA-1
tig0018782 CDS 62792 62949 62792 ID=Msa1369410-mRNA-1:cds;Parent=Msa1369410-mRNA-1
tig0018782 CDS 62239 62701 62239 ID=Msa1369410-mRNA-1:cds;Parent=Msa1369410-mRNA-1
tig0018782 CDS 62016 62138 62016 ID=Msa1369410-mRNA-1:cds;Parent=Msa1369410-mRNA-1
tig0018782 CDS 61553 61764 61553 ID=Msa1369410-mRNA-1:cds;Parent=Msa1369410-mRNA-1
tig0018782 CDS 61003 61435 61003 ID=Msa1369410-mRNA-1:cds;Parent=Msa1369410-mRNA-1
tig0018782 three_prime_UTR 60662 61002 60662 ID=Msa1369410-mRNA-1:three_prime_utr;Parent=Msa1369410-mRNA-1
Gene Sequence

>Msa1369410

ATGGAAGCAATATTCAAGAGATTCCAATTATGTGTTATTTCCTTTCTCATTTTTCTCACTATTCTTACTCAAACCTTCAGCTCAACTGCATTTGATGACACTGAATATGAAGATTGGGAAAGCAATATTCATATACCAAATTCCATCTTAACTTATGGGAGTGAAATGGAGGAAGCTGAATGGCAGATGGTGCAAAAGAAAGGAAACCAATTTGCAGTGAATGACCAACCTTTCTATGTAAATGGATTCAACACTTACTGGTTGATGGTATTTGCTGCGGACGAGTCGACAAGAGGAAGGGTCACTCAGGTGTTCAAACATGCATTCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGAGAGCCCTTCAGAAATCACCATCACTTTATGATGAAGTAGTATTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAATACAGAATCAGACTCATATTATCATTGGTTAACAATTGGGAGGCATATGGTGGCAAAGCACAGTATGTCAAGTGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTTTTCTCACATCCAACTCTCAGAGGCTACTACAAGGACCATGTCAAGACTGTGCTCAATAGAGTTAACACACTCACAAATATCACTTATAAGGAAGATCCAACAATTTTTGCTTGGGAGCTAATGAATGAGCCTCGATGCACCTCTGACTCCTCTGGTGATACGTTACAGGAATGGATAAAAGAGATGGCATTCTATGTTAAGAGCGTTGATCCGAAACACCTACTGGAGATTGGCCTAGAAGGATTTTATGGCCCCTCAACACCTCAGAGATTTCAGTTCAACCCAAATTCATATGCTCAACAGGTTGGAACTGATTTTATCAGAAACCACCAGGTTCTAGGTGTCGACTTTGCTTCTGCTCATATATATCCAGACTCTTGGATTTCACAATCAGTTGCTGATAGCCATATCCCATTTGTGAAGTCTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCGGTTGTTTTTGGTGAGTTTGGTGTATCTGCAAAAGATCCTGGTTATAATTCAACATATAGAGATACATTTATAAATACTGTGTACAAGACAATTCTAAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTTTGTGGCAGTTCTTTCCTGATGGAACAGATTACATGGATGATGGTTATGCAATTGTTCTCTCAAAAGCTCCTTCTATTTCAAGCATGATATCCCTTCAATCCACAAGGCTTGCCCTATTCAACTCCCTCTGCTCTGAGAGATGCCACTGGGGTTGTAAGAAGAAAAAGGTGTTGCAAAATGTAGTCTACGAGGATGAGGAGTAG

Protein sequence

>Msa1369410

MEAIFKRFQLCVISFLIFLTILTQTFSSTAFDDTEYEDWESNIHIPNSILTYGSEMEEAEWQMVQKKGNQFAVNDQPFYVNGFNTYWLMVFAADESTRGRVTQVFKHAFSVGMTVCRTWAFNDGQWRALQKSPSLYDEVVFKALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRGYYKDHVKTVLNRVNTLTNITYKEDPTIFAWELMNEPRCTSDSSGDTLQEWIKEMAFYVKSVDPKHLLEIGLEGFYGPSTPQRFQFNPNSYAQQVGTDFIRNHQVLGVDFASAHIYPDSWISQSVADSHIPFVKSWMEAHIEDAEKYLGMPVVFGEFGVSAKDPGYNSTYRDTFINTVYKTILNSTKKGGSGAGSLLWQFFPDGTDYMDDGYAIVLSKAPSISSMISLQSTRLALFNSLCSERCHWGCKKKKVLQNVVYEDEE*