Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034490 | sp|Q40153|LE14B_LITER | 62.737 | 475 | 149 | 2 | 13 | 461 | 1 | 473 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034490 | Msa0083030 | 0.850853 | 1.298297e-60 | -8.615850e-47 |
| Msa0034490 | Msa0554740 | 0.858669 | 7.030284e-63 | -8.615850e-47 |
| Msa0034490 | Msa0626820 | 0.856957 | 2.263353e-62 | -8.615850e-47 |
| Msa0034490 | Msa0664950 | 0.829140 | 6.081903e-55 | -8.615850e-47 |
| Msa0034490 | Msa1382160 | 0.807967 | 3.902505e-50 | -8.615850e-47 |
| Msa0034490 | Msa1416350 | 0.881745 | 1.859854e-70 | -8.615850e-47 |
| Msa0034490 | Msa1453080 | 0.811031 | 8.578797e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034490 | MtrunA17_Chr1g0196321 | 93.131 | 495 | 8 | 1 | 1 | 469 | 1 | 495 | 0.0 | 947 |
| Msa0034490 | MtrunA17_Chr2g0286731 | 64.220 | 436 | 126 | 3 | 49 | 458 | 32 | 463 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0034490 | AT4G03020.1 | 67.835 | 485 | 125 | 4 | 10 | 465 | 10 | 492 | 0.0 | 669 |
| Msa0034490 | AT4G03020.2 | 67.835 | 485 | 125 | 4 | 10 | 465 | 10 | 492 | 0.0 | 669 |
| Msa0034490 | AT4G03020.3 | 67.835 | 485 | 125 | 4 | 10 | 465 | 10 | 492 | 0.0 | 669 |
| Msa0034490 | AT2G43770.1 | 21.970 | 396 | 211 | 11 | 72 | 439 | 13 | 338 | 5.89e-12 | 67.4 |
Find 116 sgRNAs with CRISPR-Local
Find 368 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTCTGCTTTGGGTAAT+TGG | 0.178793 | 1_1:+62511435 | None:intergenic |
| AATCTCTTACAGGTGATTTA+TGG | 0.181919 | 1_1:+62506179 | None:intergenic |
| ATGTGCAAATTGTTACAAAA+AGG | 0.220757 | 1_1:+62511397 | None:intergenic |
| CTATGCTCGTTAGCTCTTCT+TGG | 0.255220 | 1_1:-62506135 | Msa0034490:CDS |
| AGCAGATATTTACCTGTAAA+TGG | 0.272385 | 1_1:-62509889 | Msa0034490:CDS |
| ATATGATCTTGAAACAAATA+AGG | 0.306324 | 1_1:-62509098 | Msa0034490:CDS |
| TAGCACTGGAAAATCTAAAA+AGG | 0.311940 | 1_1:-62510100 | Msa0034490:CDS |
| ATATGGTGTTTGACATAATA+AGG | 0.315445 | 1_1:-62505938 | Msa0034490:three_prime_UTR |
| GACGATGGAGGATACTCTTT+TGG | 0.318718 | 1_1:-62509193 | Msa0034490:CDS |
| TTCATGGAATCTTCTGCTTT+GGG | 0.326986 | 1_1:+62511428 | None:intergenic |
| GTTCATGGAATCTTCTGCTT+TGG | 0.330166 | 1_1:+62511427 | None:intergenic |
| CCTTCCCCGTCCTGAACAAT+TGG | 0.339582 | 1_1:+62509942 | None:intergenic |
| GTTGATATTGAAGTTGTATA+TGG | 0.348324 | 1_1:-62505955 | Msa0034490:three_prime_UTR |
| TTTAAATAGCTCAGATGCTT+TGG | 0.350837 | 1_1:-62510268 | Msa0034490:five_prime_UTR |
| AGCATCTTCACCGGGGAAAC+AGG | 0.359807 | 1_1:+62509979 | None:intergenic |
| ACGTATGTCCCAAAGTTTGA+TGG | 0.361310 | 1_1:+62507891 | None:intergenic |
| TGCACTTTACGTTGACCAAA+TGG | 0.380038 | 1_1:-62510193 | Msa0034490:CDS |
| TGCCAACTACAATCTCTTAC+AGG | 0.382540 | 1_1:+62506169 | None:intergenic |
| TTCCAGTGCTAGAATCTTCA+AGG | 0.382938 | 1_1:+62510112 | None:intergenic |
| ATAGTTATGTACGCTATATC+TGG | 0.384746 | 1_1:-62510216 | Msa0034490:exon |
| ACTGATTTAACTGACATCAT+AGG | 0.385029 | 1_1:+62506014 | None:intergenic |
| CTTACTAGATGGCTTTGATC+AGG | 0.388290 | 1_1:+62509610 | None:intergenic |
| GGCCAGAAGTATATCTATAC+TGG | 0.393179 | 1_1:-62506846 | Msa0034490:CDS |
| ATACAGACCATATACCTCTT+AGG | 0.393989 | 1_1:+62511325 | None:intergenic |
| ATCCAGTATAGATATACTTC+TGG | 0.402582 | 1_1:+62506844 | None:intergenic |
| ATAGGCCAAGGACCATTTAC+AGG | 0.415805 | 1_1:+62509877 | None:intergenic |
| GGCCGCGAATCCAATTGTTC+AGG | 0.416503 | 1_1:-62509952 | Msa0034490:CDS |
| CGTATGCTCGACTAGGCATT+TGG | 0.426545 | 1_1:+62509851 | None:intergenic |
| TACTCATAGCATAACCCATT+TGG | 0.431168 | 1_1:+62510178 | None:intergenic |
| AGATCAGACCATCAAACTTT+GGG | 0.433353 | 1_1:-62507899 | Msa0034490:CDS |
| GGGATGGAGATGTTGTAAAA+TGG | 0.435817 | 1_1:-62506114 | Msa0034490:CDS |
| AAGATCAGACCATCAAACTT+TGG | 0.439366 | 1_1:-62507900 | Msa0034490:CDS |
| TATGCTCGTTAGCTCTTCTT+GGG | 0.443104 | 1_1:-62506134 | Msa0034490:CDS |
| GATGGGAGGGAATTAGTTGC+AGG | 0.457956 | 1_1:-62509145 | Msa0034490:CDS |
| AATTTCAGTAACCGTGTTCG+TGG | 0.462360 | 1_1:-62507192 | Msa0034490:intron |
| ATGTGTTTATGTATATGATT+TGG | 0.470295 | 1_1:-62506811 | Msa0034490:intron |
| ATCGTACACATTGTAAATGT+TGG | 0.472091 | 1_1:-62509469 | Msa0034490:CDS |
| ATTTACCTGTAAATGGTCCT+TGG | 0.479935 | 1_1:-62509882 | Msa0034490:CDS |
| CGGCCTGCCAGCATCTTCAC+CGG | 0.481898 | 1_1:+62509970 | None:intergenic |
| CAGTCAGTGGCTACGTATAG+AGG | 0.482615 | 1_1:-62507093 | Msa0034490:CDS |
| GCACTTTACGTTGACCAAAT+GGG | 0.482739 | 1_1:-62510192 | Msa0034490:CDS |
| CGAATCCAATTGTTCAGGAC+GGG | 0.482995 | 1_1:-62509947 | Msa0034490:CDS |
| ATCCTTGAAGATTCTAGCAC+TGG | 0.486362 | 1_1:-62510114 | Msa0034490:CDS |
| TCCCCGGTGAAGATGCTGGC+AGG | 0.486810 | 1_1:-62509973 | Msa0034490:CDS |
| CTCGTTAGCTCTTCTTGGGA+TGG | 0.489305 | 1_1:-62506130 | Msa0034490:CDS |
| TGAATGGGATTACAGGTGGA+TGG | 0.490487 | 1_1:-62507157 | Msa0034490:CDS |
| GTCCTGAACAATTGGATTCG+CGG | 0.491213 | 1_1:+62509950 | None:intergenic |
| ATTATTTATGTACAAGATTG+TGG | 0.493007 | 1_1:+62505901 | None:intergenic |
| CTCTGATGTGGCAGCCTCGT+CGG | 0.495084 | 1_1:-62506077 | Msa0034490:CDS |
| GAAAGAGTTGCCTGTTTCCC+CGG | 0.495375 | 1_1:-62509989 | Msa0034490:CDS |
| TATACAATGTGGACAAAGGT+TGG | 0.499477 | 1_1:-62509696 | Msa0034490:CDS |
| CTGCTAGTACATGATGGGTC+TGG | 0.500073 | 1_1:-62510015 | Msa0034490:CDS |
| TTACTAGATGGCTTTGATCA+GGG | 0.501289 | 1_1:+62509611 | None:intergenic |
| GGACGCTATTTCATTTCAAA+CGG | 0.501559 | 1_1:-62507925 | Msa0034490:CDS |
| CATCAACTGCTAGTACATGA+TGG | 0.505267 | 1_1:-62510021 | Msa0034490:CDS |
| CAAGAAGAGCTAACGAGCAT+AGG | 0.505730 | 1_1:+62506136 | None:intergenic |
| CACCTGTAAGAGATTGTAGT+TGG | 0.509483 | 1_1:-62506171 | Msa0034490:CDS |
| TGTCCCATCAAAACCCCTGC+CGG | 0.512728 | 1_1:+62507985 | None:intergenic |
| GTAACCGTGTTCGTGGATAT+AGG | 0.517492 | 1_1:-62507185 | Msa0034490:CDS |
| CCAATTGTTCAGGACGGGGA+AGG | 0.517976 | 1_1:-62509942 | Msa0034490:CDS |
| TGTTTCCCCGGTGAAGATGC+TGG | 0.519063 | 1_1:-62509977 | Msa0034490:CDS |
| AATGCTAAAGACAAGCCGGC+AGG | 0.520946 | 1_1:-62508000 | Msa0034490:CDS |
| TTTATTGATACCCGTGGAGA+TGG | 0.521044 | 1_1:-62507946 | Msa0034490:CDS |
| TTTAGTGGTCACCTAAAAGC+TGG | 0.522377 | 1_1:+62507030 | None:intergenic |
| CAATAAATGTAATGCCCTCA+AGG | 0.532155 | 1_1:+62507962 | None:intergenic |
| AAGAGCATACCTGGTAACAT+TGG | 0.534358 | 1_1:+62507858 | None:intergenic |
| GTTGTAAAATGGCAATCTGC+TGG | 0.535124 | 1_1:-62506103 | Msa0034490:CDS |
| TGCTAAAGACAAGCCGGCAG+GGG | 0.535291 | 1_1:-62507998 | Msa0034490:CDS |
| GACTCTAGTGATACTGAAGA+TGG | 0.540581 | 1_1:-62510144 | Msa0034490:CDS |
| CAAGAGTGCGTAAGACTGAA+TGG | 0.543044 | 1_1:+62507070 | None:intergenic |
| GATGATTCATTACAGGTGAG+TGG | 0.544157 | 1_1:-62506226 | Msa0034490:intron |
| CGACTAGGCATTTGGTCGAT+AGG | 0.547791 | 1_1:+62509859 | None:intergenic |
| TACTAGATGGCTTTGATCAG+GGG | 0.548826 | 1_1:+62509612 | None:intergenic |
| GCAGGAGATCCACGATGGGT+TGG | 0.550911 | 1_1:-62509230 | Msa0034490:intron |
| ATCTGCTGGGAGCTCTGATG+TGG | 0.552704 | 1_1:-62506089 | Msa0034490:CDS |
| GGCCTGCCAGCATCTTCACC+GGG | 0.553632 | 1_1:+62509971 | None:intergenic |
| AAGAAGAGCTAACGAGCATA+GGG | 0.554781 | 1_1:+62506137 | None:intergenic |
| ATGCTAAAGACAAGCCGGCA+GGG | 0.560101 | 1_1:-62507999 | Msa0034490:CDS |
| TTTGCAGGATTGACAAACAC+AGG | 0.564708 | 1_1:-62510307 | Msa0034490:intron |
| CTTAAATGCTAAAGACAAGC+CGG | 0.577168 | 1_1:-62508004 | Msa0034490:CDS |
| ACATTTACAATGTGTACGAT+AGG | 0.581114 | 1_1:+62509472 | None:intergenic |
| ATCAACTGCTAGTACATGAT+GGG | 0.581257 | 1_1:-62510020 | Msa0034490:CDS |
| TTGTAAAATGGCAATCTGCT+GGG | 0.586915 | 1_1:-62506102 | Msa0034490:CDS |
| GAAATAGCGTCCATCTCCAC+GGG | 0.592069 | 1_1:+62507936 | None:intergenic |
| TGAAATAGCGTCCATCTCCA+CGG | 0.592795 | 1_1:+62507935 | None:intergenic |
| ATGAGGTGTTGATTTCAACT+TGG | 0.593854 | 1_1:+62510041 | None:intergenic |
| AAATGTCATCCAATGTTACC+AGG | 0.595793 | 1_1:-62507867 | Msa0034490:intron |
| AGACCATATACCTCTTAGGA+TGG | 0.598422 | 1_1:+62511329 | None:intergenic |
| AAAATATACAATGTGGACAA+AGG | 0.599948 | 1_1:-62509700 | Msa0034490:CDS |
| AGCCTCGTCGGTTAAGAAGA+GGG | 0.600390 | 1_1:-62506065 | Msa0034490:CDS |
| CAGCCTCGTCGGTTAAGAAG+AGG | 0.601348 | 1_1:-62506066 | Msa0034490:CDS |
| GAATTAGTTGCAGGAACTAG+TGG | 0.606878 | 1_1:-62509136 | Msa0034490:CDS |
| TTCTAACTAAGAGTTTGAGA+TGG | 0.609877 | 1_1:-62509657 | Msa0034490:CDS |
| CTAACGAGCATAGGGTGGAA+AGG | 0.614104 | 1_1:+62506145 | None:intergenic |
| TAGTACATGATGGGTCTGGA+AGG | 0.615748 | 1_1:-62510011 | Msa0034490:CDS |
| GCGAATCCAATTGTTCAGGA+CGG | 0.617169 | 1_1:-62509948 | Msa0034490:CDS |
| TTGCAGGATTGACAAACACA+GGG | 0.621645 | 1_1:-62510306 | Msa0034490:intron |
| TGAGACACGTATGCTCGACT+AGG | 0.624491 | 1_1:+62509844 | None:intergenic |
| AACTCCTATATCCACGAACA+CGG | 0.626589 | 1_1:+62507181 | None:intergenic |
| GGCATTTGGTCGATAGGCCA+AGG | 0.629750 | 1_1:+62509865 | None:intergenic |
| GAATCCAATTGTTCAGGACG+GGG | 0.630776 | 1_1:-62509946 | Msa0034490:CDS |
| GTGTACGATAGGTGACATGC+TGG | 0.632627 | 1_1:+62509483 | None:intergenic |
| TGCTATGAGTAGATTAGACG+TGG | 0.632706 | 1_1:-62510166 | Msa0034490:CDS |
| AAGAGCTAACGAGCATAGGG+TGG | 0.635204 | 1_1:+62506140 | None:intergenic |
| TCATGTACTAGCAGTTGATG+AGG | 0.637096 | 1_1:+62510024 | None:intergenic |
| ATTACATTTATTGATACCCG+TGG | 0.637357 | 1_1:-62507952 | Msa0034490:CDS |
| CAAAAGATGACAGCGATCAG+CGG | 0.644029 | 1_1:+62509912 | None:intergenic |
| AATATGCAGGAGATCCACGA+TGG | 0.665955 | 1_1:-62509235 | Msa0034490:intron |
| TCATCCTTGTGATCAGTCAG+TGG | 0.674274 | 1_1:-62507106 | Msa0034490:CDS |
| GTAGCCACTGACTGATCACA+AGG | 0.680555 | 1_1:+62507102 | None:intergenic |
| CATAACTATTCAAATCAACA+CGG | 0.685486 | 1_1:+62510230 | None:intergenic |
| ATATGCAGGAGATCCACGAT+GGG | 0.686383 | 1_1:-62509234 | Msa0034490:intron |
| AGAGTCACTAGCAAATGTGA+CGG | 0.704087 | 1_1:-62509434 | Msa0034490:intron |
| TACCCTCTTCTTAACCGACG+AGG | 0.713771 | 1_1:+62506063 | None:intergenic |
| GCCTGCCAGCATCTTCACCG+GGG | 0.715871 | 1_1:+62509972 | None:intergenic |
| TGCAGGATTGACAAACACAG+GGG | 0.728226 | 1_1:-62510305 | Msa0034490:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAAATTAATTTATTTTTC+AGG | - | chr1_1:62507640-62507659 | Msa0034490:intron | 10.0% |
| !!! | CTAAATTAATTTATTTTTCA+GGG | - | chr1_1:62507641-62507660 | Msa0034490:intron | 10.0% |
| !! | AAGAAAAATAATTGATTAAA+AGG | + | chr1_1:62507815-62507834 | None:intergenic | 10.0% |
| !! | AAAAAAATAATTAATGTAGT+TGG | + | chr1_1:62508688-62508707 | None:intergenic | 10.0% |
| !! | AAATAAATTATAAAACTTGA+GGG | + | chr1_1:62510703-62510722 | None:intergenic | 10.0% |
| !! | AAAATAAATTATAAAACTTG+AGG | + | chr1_1:62510704-62510723 | None:intergenic | 10.0% |
| !! | AATAATCACATAGATTAAAT+GGG | + | chr1_1:62506206-62506225 | None:intergenic | 15.0% |
| !! | TAATAATCACATAGATTAAA+TGG | + | chr1_1:62506207-62506226 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTCTTATCTATA+TGG | - | chr1_1:62506998-62507017 | Msa0034490:intron | 15.0% |
| !! | CTAAATAGATGTAATATTTA+TGG | + | chr1_1:62508341-62508360 | None:intergenic | 15.0% |
| !! | AAAAAGATGTATAGTAAATA+GGG | + | chr1_1:62508721-62508740 | None:intergenic | 15.0% |
| !!! | AGATTTTATGTTTTTATCAT+CGG | - | chr1_1:62510611-62510630 | Msa0034490:intron | 15.0% |
| !! | AAATAGTATAATCTATAACT+AGG | - | chr1_1:62510645-62510664 | Msa0034490:intron | 15.0% |
| !! | AATAGTATAATCTATAACTA+GGG | - | chr1_1:62510646-62510665 | Msa0034490:intron | 15.0% |
| !! | AATAAATTATAAAACTTGAG+GGG | + | chr1_1:62510702-62510721 | None:intergenic | 15.0% |
| !! | TTGATAAATTATTCAATCAT+TGG | + | chr1_1:62510756-62510775 | None:intergenic | 15.0% |
| !!! | AAAAGATGAAATTTAAGATT+TGG | - | chr1_1:62510810-62510829 | Msa0034490:intron | 15.0% |
| !!! | TGTAATGTATTATTTTTAAG+CGG | - | chr1_1:62511050-62511069 | Msa0034490:intron | 15.0% |
| !!! | GAATTTGATTCTGTAAATTT+TGG | + | chr1_1:62506137-62506156 | None:intergenic | 20.0% |
| !!! | AAGTTAGTTAGTTTGTTATT+TGG | - | chr1_1:62506745-62506764 | Msa0034490:intron | 20.0% |
| !!! | AGTTAGTTAGTTTGTTATTT+GGG | - | chr1_1:62506746-62506765 | Msa0034490:intron | 20.0% |
| !! | ATATGATCTTGAAACAAATA+AGG | - | chr1_1:62508276-62508295 | Msa0034490:intron | 20.0% |
| !! | TAAATTATAGATTCAGACAA+TGG | + | chr1_1:62508380-62508399 | None:intergenic | 20.0% |
| !! | TTGTCTGAATCTATAATTTA+TGG | - | chr1_1:62508380-62508399 | Msa0034490:intron | 20.0% |
| !! | GACAAAAAAAATTCTCAAAA+GGG | + | chr1_1:62508638-62508657 | None:intergenic | 20.0% |
| !! | AAAAGATGTATAGTAAATAG+GGG | + | chr1_1:62508720-62508739 | None:intergenic | 20.0% |
| !! | GAAAAAGATGTATAGTAAAT+AGG | + | chr1_1:62508722-62508741 | None:intergenic | 20.0% |
| !! | TCTAATGTACAAAATTGTTT+AGG | - | chr1_1:62509331-62509350 | Msa0034490:intron | 20.0% |
| !! | TTCATATAATTCAACAGATA+TGG | + | chr1_1:62509557-62509576 | None:intergenic | 20.0% |
| !! | TAAATTAGACGACTTATATT+AGG | - | chr1_1:62509761-62509780 | Msa0034490:intron | 20.0% |
| !! | AATTATGTTGTAAAATTGTG+AGG | - | chr1_1:62509876-62509895 | Msa0034490:CDS | 20.0% |
| !!! | AAACTCTGTATTTTTCATTT+TGG | + | chr1_1:62509960-62509979 | None:intergenic | 20.0% |
| !! | ACTGAAATTTAGAGAAAAAT+CGG | + | chr1_1:62510171-62510190 | None:intergenic | 20.0% |
| !! | CTTGAGCATATTAAAATTAT+TGG | - | chr1_1:62510448-62510467 | Msa0034490:intron | 20.0% |
| !! | ATGTGTTTATGTATATGATT+TGG | - | chr1_1:62510563-62510582 | Msa0034490:intron | 20.0% |
| !! | ATAGTATAATCTATAACTAG+GGG | - | chr1_1:62510647-62510666 | Msa0034490:intron | 20.0% |
| !! | ATTATTTATGTACAAGATTG+TGG | + | chr1_1:62511476-62511495 | None:intergenic | 20.0% |
| ! | TGTGCAAATTGTTACAAAAA+GGG | + | chr1_1:62505979-62505998 | None:intergenic | 25.0% |
| ! | ATGTGCAAATTGTTACAAAA+AGG | + | chr1_1:62505980-62505999 | None:intergenic | 25.0% |
| !!! | AATTTTTGGTTTGTCTGATA+TGG | + | chr1_1:62506025-62506044 | None:intergenic | 25.0% |
| ! | ATGCACAAATACATATTAAG+AGG | + | chr1_1:62506241-62506260 | None:intergenic | 25.0% |
| !!! | AATTTTATGCATTGAGTTGT+CGG | - | chr1_1:62506609-62506628 | Msa0034490:intron | 25.0% |
| ! | ATTCATAGTTTACTGATAAG+TGG | - | chr1_1:62506637-62506656 | Msa0034490:intron | 25.0% |
| ! | TTCATAGTTTACTGATAAGT+GGG | - | chr1_1:62506638-62506657 | Msa0034490:intron | 25.0% |
| !!! | GAATTGGTTAGTTTGTTATT+TGG | - | chr1_1:62506790-62506809 | Msa0034490:intron | 25.0% |
| !!! | TATCTTTTTACGTTTTAACC+AGG | - | chr1_1:62506964-62506983 | Msa0034490:intron | 25.0% |
| ! | AAATTGTTAAAACAACAACC+TGG | + | chr1_1:62506985-62507004 | None:intergenic | 25.0% |
| ! | AAAATGTATGACGAAACAAT+AGG | + | chr1_1:62507045-62507064 | None:intergenic | 25.0% |
| ! | CATAACTATTCAAATCAACA+CGG | + | chr1_1:62507147-62507166 | None:intergenic | 25.0% |
| ! | AAACTATAGATGCATACATA+GGG | + | chr1_1:62507616-62507635 | None:intergenic | 25.0% |
| ! | AAAACTATAGATGCATACAT+AGG | + | chr1_1:62507617-62507636 | None:intergenic | 25.0% |
| !!! | CCACATTGTATATTTTTATG+CGG | + | chr1_1:62507670-62507689 | None:intergenic | 25.0% |
| ! | AAAATATACAATGTGGACAA+AGG | - | chr1_1:62507674-62507693 | Msa0034490:intron | 25.0% |
| !! | AACTGTCATAGTTTTTCTTA+TGG | - | chr1_1:62507839-62507858 | Msa0034490:intron | 25.0% |
| ! | TTTCAGTTCTTATAATATGC+AGG | - | chr1_1:62508126-62508145 | Msa0034490:intron | 25.0% |
| !! | CTATTTAGCTTCATATGATT+TGG | - | chr1_1:62508353-62508372 | Msa0034490:intron | 25.0% |
| !! | TGGAGAAATCATTTTCATAT+TGG | - | chr1_1:62508563-62508582 | Msa0034490:intron | 25.0% |
| !! | GGAGAAATCATTTTCATATT+GGG | - | chr1_1:62508564-62508583 | Msa0034490:intron | 25.0% |
| !! | AAATCATTTTCATATTGGGA+TGG | - | chr1_1:62508568-62508587 | Msa0034490:intron | 25.0% |
| !! | TCAAAAGGGTCTTATAATTA+GGG | + | chr1_1:62508624-62508643 | None:intergenic | 25.0% |
| ! | GGACAAAAAAAATTCTCAAA+AGG | + | chr1_1:62508639-62508658 | None:intergenic | 25.0% |
| !!! | ATTTTATCCTTTAAGAGAGA+GGG | + | chr1_1:62508785-62508804 | None:intergenic | 25.0% |
| !!! | AATTTTATCCTTTAAGAGAG+AGG | + | chr1_1:62508786-62508805 | None:intergenic | 25.0% |
| !!! | ATTCCCGTTATTTTTTCAAA+AGG | - | chr1_1:62508858-62508877 | Msa0034490:intron | 25.0% |
| !!! | TTCCCGTTATTTTTTCAAAA+GGG | - | chr1_1:62508859-62508878 | Msa0034490:intron | 25.0% |
| !! | ACCATAGGTTTTCTAAATTT+TGG | - | chr1_1:62508917-62508936 | Msa0034490:intron | 25.0% |
| ! | ACCAAAATTTAGAAAACCTA+TGG | + | chr1_1:62508921-62508940 | None:intergenic | 25.0% |
| ! | TCTATGTGAAATCAAAAGTT+GGG | + | chr1_1:62509109-62509128 | None:intergenic | 25.0% |
| ! | TTCTATGTGAAATCAAAAGT+TGG | + | chr1_1:62509110-62509129 | None:intergenic | 25.0% |
| ! | ATCTCATACTTATATTGTCA+AGG | - | chr1_1:62509159-62509178 | Msa0034490:CDS | 25.0% |
| ! | CAGAAAGTTTATATTGTAGT+TGG | - | chr1_1:62509264-62509283 | Msa0034490:intron | 25.0% |
| ! | GTATACTTGTGAATTATCTA+TGG | - | chr1_1:62509903-62509922 | Msa0034490:CDS | 25.0% |
| ! | GAAAATGAAGAATGATGAAA+AGG | + | chr1_1:62510379-62510398 | None:intergenic | 25.0% |
| ! | TCCAAATATGAAAATCAAAG+GGG | + | chr1_1:62510413-62510432 | None:intergenic | 25.0% |
| ! | GTCCAAATATGAAAATCAAA+GGG | + | chr1_1:62510414-62510433 | None:intergenic | 25.0% |
| ! | TGTCCAAATATGAAAATCAA+AGG | + | chr1_1:62510415-62510434 | None:intergenic | 25.0% |
| ! | AATTTGAAGAAAACAACATC+AGG | + | chr1_1:62510499-62510518 | None:intergenic | 25.0% |
| ! | TAGTATAATCTATAACTAGG+GGG | - | chr1_1:62510648-62510667 | Msa0034490:intron | 25.0% |
| !! | CTAATATTTTCATGCAGAAA+TGG | + | chr1_1:62510780-62510799 | None:intergenic | 25.0% |
| !! | ATGAAATTTAAGATTTGGAG+TGG | - | chr1_1:62510815-62510834 | Msa0034490:intron | 25.0% |
| ! | TAAAATTTGGTTATGAACAG+CGG | + | chr1_1:62511006-62511025 | None:intergenic | 25.0% |
| ! | GAGATACTGCTTATAAAATT+TGG | + | chr1_1:62511019-62511038 | None:intergenic | 25.0% |
| !!! | CAAGGCATTGTATTTTTATT+GGG | + | chr1_1:62511112-62511131 | None:intergenic | 25.0% |
| !! | AAACTTTGATGATTCATTAC+AGG | - | chr1_1:62511141-62511160 | Msa0034490:intron | 25.0% |
| ! | GTTGATATTGAAGTTGTATA+TGG | - | chr1_1:62511419-62511438 | Msa0034490:five_prime_UTR | 25.0% |
| ! | ATATGGTGTTTGACATAATA+AGG | - | chr1_1:62511436-62511455 | Msa0034490:five_prime_UTR | 25.0% |
| AAAGTGAAAGTCAACTGAAA+GGG | + | chr1_1:62506171-62506190 | None:intergenic | 30.0% | |
| TAAAGTGAAAGTCAACTGAA+AGG | + | chr1_1:62506172-62506191 | None:intergenic | 30.0% | |
| AACAGTGACTAAAAATTCAC+AGG | + | chr1_1:62506303-62506322 | None:intergenic | 30.0% | |
| ATACTAGTGTATCAATATGG+GGG | + | chr1_1:62506551-62506570 | None:intergenic | 30.0% | |
| CATACTAGTGTATCAATATG+GGG | + | chr1_1:62506552-62506571 | None:intergenic | 30.0% | |
| GCATACTAGTGTATCAATAT+GGG | + | chr1_1:62506553-62506572 | None:intergenic | 30.0% | |
| TGCATACTAGTGTATCAATA+TGG | + | chr1_1:62506554-62506573 | None:intergenic | 30.0% | |
| TTGATACACTAGTATGCATA+TGG | - | chr1_1:62506556-62506575 | Msa0034490:intron | 30.0% | |
| TATGCATATGGTATTCACTA+GGG | - | chr1_1:62506568-62506587 | Msa0034490:intron | 30.0% | |
| !! | ATTTTATGCATTGAGTTGTC+GGG | - | chr1_1:62506610-62506629 | Msa0034490:intron | 30.0% |
| !!! | GTTTTGAGTTGTTAGAGAAT+TGG | - | chr1_1:62506774-62506793 | Msa0034490:intron | 30.0% |
| ! | TAGAGAGTATGTGCATAAAT+AGG | - | chr1_1:62506819-62506838 | Msa0034490:CDS | 30.0% |
| AAACACATGATATTTGATCC+CGG | + | chr1_1:62506929-62506948 | None:intergenic | 30.0% | |
| !!! | CGTCATACATTTTATTTTGC+AGG | - | chr1_1:62507052-62507071 | Msa0034490:CDS | 30.0% |
| TTTAAATAGCTCAGATGCTT+TGG | - | chr1_1:62507106-62507125 | Msa0034490:CDS | 30.0% | |
| ATAGTTATGTACGCTATATC+TGG | - | chr1_1:62507158-62507177 | Msa0034490:CDS | 30.0% | |
| ! | TAGCACTGGAAAATCTAAAA+AGG | - | chr1_1:62507274-62507293 | Msa0034490:intron | 30.0% |
| AGCAGATATTTACCTGTAAA+TGG | - | chr1_1:62507485-62507504 | Msa0034490:intron | 30.0% | |
| CCGCATAAAAATATACAATG+TGG | - | chr1_1:62507667-62507686 | Msa0034490:intron | 30.0% | |
| TTCTAACTAAGAGTTTGAGA+TGG | - | chr1_1:62507717-62507736 | Msa0034490:intron | 30.0% | |
| CATTTGCATTCTTCAATTTC+AGG | - | chr1_1:62507862-62507881 | Msa0034490:intron | 30.0% | |
| ACATTTACAATGTGTACGAT+AGG | + | chr1_1:62507905-62507924 | None:intergenic | 30.0% | |
| ATCGTACACATTGTAAATGT+TGG | - | chr1_1:62507905-62507924 | Msa0034490:CDS | 30.0% | |
| CCAAAGATCATAATTCAATG+TGG | + | chr1_1:62507969-62507988 | None:intergenic | 30.0% | |
| CCACATTGAATTATGATCTT+TGG | - | chr1_1:62507966-62507985 | Msa0034490:CDS | 30.0% | |
| TCCAATTTGTATCTATTCCT+CGG | + | chr1_1:62508032-62508051 | None:intergenic | 30.0% | |
| !!! | TTTTCTAAGATGTCTGTAAC+TGG | - | chr1_1:62508052-62508071 | Msa0034490:intron | 30.0% |
| ATGAAAAGAACACCATCAAA+CGG | + | chr1_1:62508093-62508112 | None:intergenic | 30.0% | |
| ! | GATTTTTCATCAAATGACGA+TGG | - | chr1_1:62508166-62508185 | Msa0034490:intron | 30.0% |
| ! | TCTGTGAAATTTTCAACAGA+TGG | - | chr1_1:62508211-62508230 | Msa0034490:intron | 30.0% |
| ! | CTGTGAAATTTTCAACAGAT+GGG | - | chr1_1:62508212-62508231 | Msa0034490:intron | 30.0% |
| ! | CTCAAAAGGGTCTTATAATT+AGG | + | chr1_1:62508625-62508644 | None:intergenic | 30.0% |
| ATGTAGTTGGAAATAGCAAA+GGG | + | chr1_1:62508675-62508694 | None:intergenic | 30.0% | |
| AATGTAGTTGGAAATAGCAA+AGG | + | chr1_1:62508676-62508695 | None:intergenic | 30.0% | |
| ! | AATAACGGGAATTAAGATAG+TGG | + | chr1_1:62508850-62508869 | None:intergenic | 30.0% |
| GTAGTATTTACACATACCAT+AGG | - | chr1_1:62508902-62508921 | Msa0034490:intron | 30.0% | |
| AGTTTCATCAGCAAAACATA+CGG | + | chr1_1:62508974-62508993 | None:intergenic | 30.0% | |
| AGGTATGTTCTACAATAAGA+TGG | - | chr1_1:62509034-62509053 | Msa0034490:intron | 30.0% | |
| TGTACAAAATTGTTTAGGTC+TGG | - | chr1_1:62509336-62509355 | Msa0034490:intron | 30.0% | |
| GTACAAAATTGTTTAGGTCT+GGG | - | chr1_1:62509337-62509356 | Msa0034490:intron | 30.0% | |
| ATTACATTTATTGATACCCG+TGG | - | chr1_1:62509422-62509441 | Msa0034490:intron | 30.0% | |
| TGGGAAAGATAAAATTCATG+TGG | - | chr1_1:62509633-62509652 | Msa0034490:CDS | 30.0% | |
| AGTAAAATACACCTTGTTCA+TGG | - | chr1_1:62509688-62509707 | Msa0034490:CDS | 30.0% | |
| ACTCTAAATTTCCATGAACA+AGG | + | chr1_1:62509702-62509721 | None:intergenic | 30.0% | |
| !! | AACTCTAGTTAACTTGTATC+TGG | - | chr1_1:62509736-62509755 | Msa0034490:intron | 30.0% |
| CTAATGCATAATAGAGATAC+AGG | - | chr1_1:62509825-62509844 | Msa0034490:CDS | 30.0% | |
| ! | GTATAGAATTAGCTTAGTCT+CGG | + | chr1_1:62510116-62510135 | None:intergenic | 30.0% |
| !!! | TGGATATAGGAGTTTTGAAT+GGG | - | chr1_1:62510202-62510221 | Msa0034490:CDS | 30.0% |
| TGAAGAATGATGAAAAGGTA+AGG | + | chr1_1:62510374-62510393 | None:intergenic | 30.0% | |
| !! | TCCCCTTTGATTTTCATATT+TGG | - | chr1_1:62510409-62510428 | Msa0034490:intron | 30.0% |
| TTTCTTCAAATTTACAGCAC+TGG | - | chr1_1:62510507-62510526 | Msa0034490:intron | 30.0% | |
| ATCCAGTATAGATATACTTC+TGG | + | chr1_1:62510533-62510552 | None:intergenic | 30.0% | |
| !! | TAGTAGTTTGCTGATTGTTT+AGG | + | chr1_1:62510887-62510906 | None:intergenic | 30.0% |
| !!! | GAGTATTAGAGTTTTGTTCA+TGG | - | chr1_1:62510952-62510971 | Msa0034490:intron | 30.0% |
| !!! | GCAAGGCATTGTATTTTTAT+TGG | + | chr1_1:62511113-62511132 | None:intergenic | 30.0% |
| TCAAAGTTTCTTATTGAGCA+AGG | + | chr1_1:62511130-62511149 | None:intergenic | 30.0% | |
| AATCTCTTACAGGTGATTTA+TGG | + | chr1_1:62511198-62511217 | None:intergenic | 30.0% | |
| ! | ACTGATTTAACTGACATCAT+AGG | + | chr1_1:62511363-62511382 | None:intergenic | 30.0% |
| ! | AATCTTCTGCTTTGGGTAAT+TGG | + | chr1_1:62505942-62505961 | None:intergenic | 35.0% |
| TTCATGGAATCTTCTGCTTT+GGG | + | chr1_1:62505949-62505968 | None:intergenic | 35.0% | |
| CAAAAAGGGAAACATGTTCA+TGG | + | chr1_1:62505965-62505984 | None:intergenic | 35.0% | |
| ACCAAAAATTCCATCCTAAG+AGG | - | chr1_1:62506035-62506054 | Msa0034490:CDS | 35.0% | |
| ! | ACCTCTTAGGATGGAATTTT+TGG | + | chr1_1:62506039-62506058 | None:intergenic | 35.0% |
| ! | ATTCCATCCTAAGAGGTATA+TGG | - | chr1_1:62506042-62506061 | Msa0034490:CDS | 35.0% |
| ATACAGACCATATACCTCTT+AGG | + | chr1_1:62506052-62506071 | None:intergenic | 35.0% | |
| AAGTGAAAGTCAACTGAAAG+GGG | + | chr1_1:62506170-62506189 | None:intergenic | 35.0% | |
| !! | TGTTGATGATGTTGTGGAAA+GGG | - | chr1_1:62506319-62506338 | Msa0034490:intron | 35.0% |
| ! | ATGTTGTGGAAAGGGTTTTT+GGG | - | chr1_1:62506327-62506346 | Msa0034490:intron | 35.0% |
| AAACAACGACTGAAAAGAAG+TGG | - | chr1_1:62506394-62506413 | Msa0034490:intron | 35.0% | |
| AGAAAACCATCCCCATTATA+AGG | - | chr1_1:62506496-62506515 | Msa0034490:intron | 35.0% | |
| TGGTTCTTTCGCCTTATAAT+GGG | + | chr1_1:62506510-62506529 | None:intergenic | 35.0% | |
| GTATGCATATGGTATTCACT+AGG | - | chr1_1:62506567-62506586 | Msa0034490:intron | 35.0% | |
| TAGTTTACTGATAAGTGGGT+AGG | - | chr1_1:62506642-62506661 | Msa0034490:intron | 35.0% | |
| TGCATAAATAGGAGAACACA+AGG | - | chr1_1:62506830-62506849 | Msa0034490:CDS | 35.0% | |
| TGATATTTGATCCCGGATTA+CGG | + | chr1_1:62506922-62506941 | None:intergenic | 35.0% | |
| ATCAACACGGAAAAATGTTG+TGG | + | chr1_1:62507134-62507153 | None:intergenic | 35.0% | |
| TACTCATAGCATAACCCATT+TGG | + | chr1_1:62507199-62507218 | None:intergenic | 35.0% | |
| !! | ATGAGGTGTTGATTTCAACT+TGG | + | chr1_1:62507336-62507355 | None:intergenic | 35.0% |
| ATCAACTGCTAGTACATGAT+GGG | - | chr1_1:62507354-62507373 | Msa0034490:intron | 35.0% | |
| ATTTACCTGTAAATGGTCCT+TGG | - | chr1_1:62507492-62507511 | Msa0034490:intron | 35.0% | |
| !!! | ATGGTTCACTTTTTGTTGCT+GGG | - | chr1_1:62507564-62507583 | Msa0034490:intron | 35.0% |
| TAAAAGTGAGAATGCTTACC+TGG | + | chr1_1:62507592-62507611 | None:intergenic | 35.0% | |
| TATACAATGTGGACAAAGGT+TGG | - | chr1_1:62507678-62507697 | Msa0034490:intron | 35.0% | |
| !! | TTACTAGATGGCTTTGATCA+GGG | + | chr1_1:62507766-62507785 | None:intergenic | 35.0% |
| AAAGCCATCTAGTAAGTAAC+TGG | - | chr1_1:62507771-62507790 | Msa0034490:intron | 35.0% | |
| GTTTCCAGTTACTTACTAGA+TGG | + | chr1_1:62507778-62507797 | None:intergenic | 35.0% | |
| TCCGAGGAATAGATACAAAT+TGG | - | chr1_1:62508028-62508047 | Msa0034490:intron | 35.0% | |
| ! | TTTTCATCAAATGACGATGG+AGG | - | chr1_1:62508169-62508188 | Msa0034490:intron | 35.0% |
| ! | TGAAATTTTCAACAGATGGG+AGG | - | chr1_1:62508215-62508234 | Msa0034490:intron | 35.0% |
| ! | GAAATTTTCAACAGATGGGA+GGG | - | chr1_1:62508216-62508235 | Msa0034490:intron | 35.0% |
| ATTTATGGTGCAGTTTGAAG+CGG | - | chr1_1:62508395-62508414 | Msa0034490:intron | 35.0% | |
| ! | AGTTTGCTTAGCTGCATAAT+AGG | - | chr1_1:62508446-62508465 | Msa0034490:intron | 35.0% |
| GACACTGTCAATAGATTAAG+TGG | + | chr1_1:62508479-62508498 | None:intergenic | 35.0% | |
| ! | AAGGGTCTTATAATTAGGGA+CGG | + | chr1_1:62508620-62508639 | None:intergenic | 35.0% |
| ! | GCAAAGGGGTCTTATAAAAA+GGG | + | chr1_1:62508660-62508679 | None:intergenic | 35.0% |
| ! | AGCAAAGGGGTCTTATAAAA+AGG | + | chr1_1:62508661-62508680 | None:intergenic | 35.0% |
| TGTAGTTGGAAATAGCAAAG+GGG | + | chr1_1:62508674-62508693 | None:intergenic | 35.0% | |
| !! | GGCCCTTTTGAAAAAATAAC+GGG | + | chr1_1:62508864-62508883 | None:intergenic | 35.0% |
| !! | GGGCCCTTTTGAAAAAATAA+CGG | + | chr1_1:62508865-62508884 | None:intergenic | 35.0% |
| TTCAAAAGGGCCCTATAATT+AGG | - | chr1_1:62508872-62508891 | Msa0034490:intron | 35.0% | |
| TCAAAAGGGCCCTATAATTA+GGG | - | chr1_1:62508873-62508892 | Msa0034490:intron | 35.0% | |
| !! | TTGGTTTTCATTTTACGTGC+AGG | - | chr1_1:62508936-62508955 | Msa0034490:intron | 35.0% |
| ! | GTATGTTTTGCTGATGAAAC+TGG | - | chr1_1:62508973-62508992 | Msa0034490:intron | 35.0% |
| CACTTCCAGAGTAAATAAGA+TGG | + | chr1_1:62508999-62509018 | None:intergenic | 35.0% | |
| AAGTGATGATAGTTTCTGCA+AGG | - | chr1_1:62509014-62509033 | Msa0034490:intron | 35.0% | |
| CAAAAGTTGGGATACTCAAA+AGG | + | chr1_1:62509097-62509116 | None:intergenic | 35.0% | |
| ! | GTAATGAACACCTTTTACAC+AGG | - | chr1_1:62509130-62509149 | Msa0034490:CDS | 35.0% |
| AGATTGAACTCCTGTGTAAA+AGG | + | chr1_1:62509143-62509162 | None:intergenic | 35.0% | |
| CTTAAATGCTAAAGACAAGC+CGG | - | chr1_1:62509370-62509389 | Msa0034490:intron | 35.0% | |
| CAATAAATGTAATGCCCTCA+AGG | + | chr1_1:62509415-62509434 | None:intergenic | 35.0% | |
| ! | GGACGCTATTTCATTTCAAA+CGG | - | chr1_1:62509449-62509468 | Msa0034490:CDS | 35.0% |
| AAGATCAGACCATCAAACTT+TGG | - | chr1_1:62509474-62509493 | Msa0034490:CDS | 35.0% | |
| AGATCAGACCATCAAACTTT+GGG | - | chr1_1:62509475-62509494 | Msa0034490:CDS | 35.0% | |
| AAATGTCATCCAATGTTACC+AGG | - | chr1_1:62509507-62509526 | Msa0034490:intron | 35.0% | |
| CAACAGATATGGATACCAAA+AGG | + | chr1_1:62509546-62509565 | None:intergenic | 35.0% | |
| ACCTTATAGAAATGTGTGCT+CGG | + | chr1_1:62509856-62509875 | None:intergenic | 35.0% | |
| !!! | GTGGATATAGGAGTTTTGAA+TGG | - | chr1_1:62510201-62510220 | Msa0034490:CDS | 35.0% |
| ! | TGATTCAAGTCTTTTGCTTG+TGG | + | chr1_1:62510251-62510270 | None:intergenic | 35.0% |
| TTGTAAAATGGCAATCTGCT+GGG | - | chr1_1:62511272-62511291 | Msa0034490:intron | 35.0% | |
| GTTCATGGAATCTTCTGCTT+TGG | + | chr1_1:62505950-62505969 | None:intergenic | 40.0% | |
| AGACCATATACCTCTTAGGA+TGG | + | chr1_1:62506048-62506067 | None:intergenic | 40.0% | |
| !! | AGTCACTGTTGATGATGTTG+TGG | - | chr1_1:62506313-62506332 | Msa0034490:intron | 40.0% |
| !! | CTGTTGATGATGTTGTGGAA+AGG | - | chr1_1:62506318-62506337 | Msa0034490:intron | 40.0% |
| ! | GATGTTGTGGAAAGGGTTTT+TGG | - | chr1_1:62506326-62506345 | Msa0034490:intron | 40.0% |
| ! | TGTTGTGGAAAGGGTTTTTG+GGG | - | chr1_1:62506328-62506347 | Msa0034490:intron | 40.0% |
| GGTTCTTTCGCCTTATAATG+GGG | + | chr1_1:62506509-62506528 | None:intergenic | 40.0% | |
| GTGGTTCTTTCGCCTTATAA+TGG | + | chr1_1:62506511-62506530 | None:intergenic | 40.0% | |
| AGACACAATTGACCGTAATC+CGG | - | chr1_1:62506907-62506926 | Msa0034490:intron | 40.0% | |
| TTTGCAGGATTGACAAACAC+AGG | - | chr1_1:62507067-62507086 | Msa0034490:CDS | 40.0% | |
| TTGCAGGATTGACAAACACA+GGG | - | chr1_1:62507068-62507087 | Msa0034490:CDS | 40.0% | |
| TGCACTTTACGTTGACCAAA+TGG | - | chr1_1:62507181-62507200 | Msa0034490:CDS | 40.0% | |
| GCACTTTACGTTGACCAAAT+GGG | - | chr1_1:62507182-62507201 | Msa0034490:CDS | 40.0% | |
| TGCTATGAGTAGATTAGACG+TGG | - | chr1_1:62507208-62507227 | Msa0034490:intron | 40.0% | |
| GACTCTAGTGATACTGAAGA+TGG | - | chr1_1:62507230-62507249 | Msa0034490:intron | 40.0% | |
| ATCCTTGAAGATTCTAGCAC+TGG | - | chr1_1:62507260-62507279 | Msa0034490:intron | 40.0% | |
| TTCCAGTGCTAGAATCTTCA+AGG | + | chr1_1:62507265-62507284 | None:intergenic | 40.0% | |
| ! | TCATGTACTAGCAGTTGATG+AGG | + | chr1_1:62507353-62507372 | None:intergenic | 40.0% |
| CATCAACTGCTAGTACATGA+TGG | - | chr1_1:62507353-62507372 | Msa0034490:intron | 40.0% | |
| !!! | GATGGTTCACTTTTTGTTGC+TGG | - | chr1_1:62507563-62507582 | Msa0034490:intron | 40.0% |
| !! | TACTAGATGGCTTTGATCAG+GGG | + | chr1_1:62507765-62507784 | None:intergenic | 40.0% |
| !! | CTTACTAGATGGCTTTGATC+AGG | + | chr1_1:62507767-62507786 | None:intergenic | 40.0% |
| AGAGTCACTAGCAAATGTGA+CGG | - | chr1_1:62507940-62507959 | Msa0034490:CDS | 40.0% | |
| !! | GTTTTGAATGCTATGATCCG+AGG | - | chr1_1:62508012-62508031 | Msa0034490:CDS | 40.0% |
| CTGTAACTGGTGTATGTACA+AGG | - | chr1_1:62508065-62508084 | Msa0034490:intron | 40.0% | |
| ATGTACAAGGTTCCGTTTGA+TGG | - | chr1_1:62508078-62508097 | Msa0034490:intron | 40.0% | |
| ATGAAAAATCCAACCCATCG+TGG | + | chr1_1:62508156-62508175 | None:intergenic | 40.0% | |
| GAATTAGTTGCAGGAACTAG+TGG | - | chr1_1:62508238-62508257 | Msa0034490:intron | 40.0% | |
| ! | TTTATGGTGCAGTTTGAAGC+GGG | - | chr1_1:62508396-62508415 | Msa0034490:intron | 40.0% |
| ! | CATATTGGGATGGCTCTATA+TGG | - | chr1_1:62508578-62508597 | Msa0034490:intron | 40.0% |
| AAACCAACCCTCTCTCTTAA+AGG | - | chr1_1:62508775-62508794 | Msa0034490:intron | 40.0% | |
| ! | TATCCTTTAAGAGAGAGGGT+TGG | + | chr1_1:62508781-62508800 | None:intergenic | 40.0% |
| TACCTCCGTCCCTAATTATA+GGG | + | chr1_1:62508612-62508631 | None:intergenic | 40.0% | |
| ! | ACTGGCCATCTTATTTACTC+TGG | - | chr1_1:62508991-62509010 | Msa0034490:intron | 40.0% |
| AGTTGGGATACTCAAAAGGA+GGG | + | chr1_1:62509093-62509112 | None:intergenic | 40.0% | |
| AAGTTGGGATACTCAAAAGG+AGG | + | chr1_1:62509094-62509113 | None:intergenic | 40.0% | |
| !! | GTTGTTTTGTTCTTTCCCTC+TGG | - | chr1_1:62509288-62509307 | Msa0034490:intron | 40.0% |
| TTTATTGATACCCGTGGAGA+TGG | - | chr1_1:62509428-62509447 | Msa0034490:intron | 40.0% | |
| ACGTATGTCCCAAAGTTTGA+TGG | + | chr1_1:62509486-62509505 | None:intergenic | 40.0% | |
| ! | AAGAGCATACCTGGTAACAT+TGG | + | chr1_1:62509519-62509538 | None:intergenic | 40.0% |
| ! | AAAGGCTAAAAGAGCATACC+TGG | + | chr1_1:62509528-62509547 | None:intergenic | 40.0% |
| !! | GGTATGCTCTTTTAGCCTTT+TGG | - | chr1_1:62509528-62509547 | Msa0034490:intron | 40.0% |
| AACCATAAGTCTGTGACTGA+TGG | - | chr1_1:62509787-62509806 | Msa0034490:intron | 40.0% | |
| ACCATAAGTCTGTGACTGAT+GGG | - | chr1_1:62509788-62509807 | Msa0034490:intron | 40.0% | |
| TCCGAGCACACATTTCTATA+AGG | - | chr1_1:62509852-62509871 | Msa0034490:CDS | 40.0% | |
| GACACAGAATCATCGTTGAT+TGG | + | chr1_1:62510028-62510047 | None:intergenic | 40.0% | |
| AGGAACAGACAACATTAGCT+AGG | + | chr1_1:62510091-62510110 | None:intergenic | 40.0% | |
| ! | GAATTAGCTTAGTCTCGGAT+AGG | + | chr1_1:62510111-62510130 | None:intergenic | 40.0% |
| TACGATTGTTCGCAATGCAA+AGG | - | chr1_1:62510133-62510152 | Msa0034490:CDS | 40.0% | |
| AATTTCAGTAACCGTGTTCG+TGG | - | chr1_1:62510182-62510201 | Msa0034490:CDS | 40.0% | |
| AACTCCTATATCCACGAACA+CGG | + | chr1_1:62510196-62510215 | None:intergenic | 40.0% | |
| !!! | GGAGTTTTGAATGGGATTAC+AGG | - | chr1_1:62510210-62510229 | Msa0034490:CDS | 40.0% |
| !! | GTTTTGAATGGGATTACAGG+TGG | - | chr1_1:62510213-62510232 | Msa0034490:CDS | 40.0% |
| ! | TTCAAGTCTTTTGCTTGTGG+CGG | + | chr1_1:62510248-62510267 | None:intergenic | 40.0% |
| !! | GCTTTTTCTCTCCAGCTTTT+AGG | - | chr1_1:62510333-62510352 | Msa0034490:intron | 40.0% |
| TTTAGTGGTCACCTAAAAGC+TGG | + | chr1_1:62510347-62510366 | None:intergenic | 40.0% | |
| !! | CTTTTAGGTGACCACTAAAC+TGG | - | chr1_1:62510348-62510367 | Msa0034490:intron | 40.0% |
| AAAAGGTAAGGCCAGTTTAG+TGG | + | chr1_1:62510362-62510381 | None:intergenic | 40.0% | |
| ! | GGCCAGAAGTATATCTATAC+TGG | - | chr1_1:62510528-62510547 | Msa0034490:intron | 40.0% |
| AATCTATAACTAGGGGGAAG+AGG | - | chr1_1:62510654-62510673 | Msa0034490:intron | 40.0% | |
| ATCTATAACTAGGGGGAAGA+GGG | - | chr1_1:62510655-62510674 | Msa0034490:intron | 40.0% | |
| TCTCCTTGAACTTTGATTCC+TGG | - | chr1_1:62510975-62510994 | Msa0034490:intron | 40.0% | |
| GATGATTCATTACAGGTGAG+TGG | - | chr1_1:62511148-62511167 | Msa0034490:intron | 40.0% | |
| CACCTGTAAGAGATTGTAGT+TGG | - | chr1_1:62511203-62511222 | Msa0034490:intron | 40.0% | |
| TGCCAACTACAATCTCTTAC+AGG | + | chr1_1:62511208-62511227 | None:intergenic | 40.0% | |
| AAGAAGAGCTAACGAGCATA+GGG | + | chr1_1:62511240-62511259 | None:intergenic | 40.0% | |
| ! | TATGCTCGTTAGCTCTTCTT+GGG | - | chr1_1:62511240-62511259 | Msa0034490:intron | 40.0% |
| GGGATGGAGATGTTGTAAAA+TGG | - | chr1_1:62511260-62511279 | Msa0034490:intron | 40.0% | |
| GTTGTAAAATGGCAATCTGC+TGG | - | chr1_1:62511271-62511290 | Msa0034490:intron | 40.0% | |
| !!! | AAGGGTTTTTGGGGTCATAG+AGG | - | chr1_1:62506337-62506356 | Msa0034490:intron | 45.0% |
| !!! | GTTTTTGGGGTCATAGAGGT+GGG | - | chr1_1:62506341-62506360 | Msa0034490:intron | 45.0% |
| !!! | TTTTTGGGGTCATAGAGGTG+GGG | - | chr1_1:62506342-62506361 | Msa0034490:intron | 45.0% |
| ACGACTGAAAAGAAGTGGCT+TGG | - | chr1_1:62506399-62506418 | Msa0034490:intron | 45.0% | |
| CGACTGAAAAGAAGTGGCTT+GGG | - | chr1_1:62506400-62506419 | Msa0034490:intron | 45.0% | |
| ! | CTTTCGCCTTATAATGGGGA+TGG | + | chr1_1:62506505-62506524 | None:intergenic | 45.0% |
| !! | AGTTTGTTGGGCTTCAACTG+CGG | - | chr1_1:62506672-62506691 | Msa0034490:intron | 45.0% |
| GACACAATTGACCGTAATCC+GGG | - | chr1_1:62506908-62506927 | Msa0034490:intron | 45.0% | |
| TGCAGGATTGACAAACACAG+GGG | - | chr1_1:62507069-62507088 | Msa0034490:CDS | 45.0% | |
| !! | TAGTACATGATGGGTCTGGA+AGG | - | chr1_1:62507363-62507382 | Msa0034490:intron | 45.0% |
| GTCCTGAACAATTGGATTCG+CGG | + | chr1_1:62507427-62507446 | None:intergenic | 45.0% | |
| GCGAATCCAATTGTTCAGGA+CGG | - | chr1_1:62507426-62507445 | Msa0034490:intron | 45.0% | |
| CGAATCCAATTGTTCAGGAC+GGG | - | chr1_1:62507427-62507446 | Msa0034490:intron | 45.0% | |
| GAATCCAATTGTTCAGGACG+GGG | - | chr1_1:62507428-62507447 | Msa0034490:intron | 45.0% | |
| CAAAAGATGACAGCGATCAG+CGG | + | chr1_1:62507465-62507484 | None:intergenic | 45.0% | |
| ATAGGCCAAGGACCATTTAC+AGG | + | chr1_1:62507500-62507519 | None:intergenic | 45.0% | |
| ! | GTGTCTCAGTTTTCAGCTGA+TGG | - | chr1_1:62507545-62507564 | Msa0034490:intron | 45.0% |
| ! | ACTTTTTGTTGCTGGGTTCC+AGG | - | chr1_1:62507571-62507590 | Msa0034490:intron | 45.0% |
| AATATGCAGGAGATCCACGA+TGG | - | chr1_1:62508139-62508158 | Msa0034490:intron | 45.0% | |
| ATATGCAGGAGATCCACGAT+GGG | - | chr1_1:62508140-62508159 | Msa0034490:intron | 45.0% | |
| ! | GACGATGGAGGATACTCTTT+TGG | - | chr1_1:62508181-62508200 | Msa0034490:intron | 45.0% |
| !! | GCTTCGAATTTTAGCGCACA+CGG | - | chr1_1:62508303-62508322 | Msa0034490:intron | 45.0% |
| ! | GGTCTTATAATTAGGGACGG+AGG | + | chr1_1:62508617-62508636 | None:intergenic | 45.0% |
| AAGGGCCCTATAATTAGGGA+CGG | - | chr1_1:62508877-62508896 | Msa0034490:intron | 45.0% | |
| CTACCTCCGTCCCTAATTAT+AGG | + | chr1_1:62508611-62508630 | None:intergenic | 45.0% | |
| !! | GTTTTGATGGGACACCTTGA+GGG | - | chr1_1:62509398-62509417 | Msa0034490:intron | 45.0% |
| TGAAATAGCGTCCATCTCCA+CGG | + | chr1_1:62509442-62509461 | None:intergenic | 45.0% | |
| ACCCATCAGTCACAGACTTA+TGG | + | chr1_1:62509792-62509811 | None:intergenic | 45.0% | |
| ! | AAGTCTGTGACTGATGGGTA+TGG | - | chr1_1:62509793-62509812 | Msa0034490:intron | 45.0% |
| TTTGTGTCAGCTTGTCTGTC+TGG | - | chr1_1:62510050-62510069 | Msa0034490:CDS | 45.0% | |
| GTAACCGTGTTCGTGGATAT+AGG | - | chr1_1:62510189-62510208 | Msa0034490:CDS | 45.0% | |
| TGAATGGGATTACAGGTGGA+TGG | - | chr1_1:62510217-62510236 | Msa0034490:exon | 45.0% | |
| ! | TCAAGTCTTTTGCTTGTGGC+GGG | + | chr1_1:62510247-62510266 | None:intergenic | 45.0% |
| TCATCCTTGTGATCAGTCAG+TGG | - | chr1_1:62510268-62510287 | Msa0034490:five_prime_UTR | 45.0% | |
| ! | CAAGAGTGCGTAAGACTGAA+TGG | + | chr1_1:62510307-62510326 | None:intergenic | 45.0% |
| AAGCTGGAGAGAAAAAGCAG+CGG | + | chr1_1:62510331-62510350 | None:intergenic | 45.0% | |
| AGGCCAGGAATCAAAGTTCA+AGG | + | chr1_1:62510981-62511000 | None:intergenic | 45.0% | |
| CAAGAAGAGCTAACGAGCAT+AGG | + | chr1_1:62511241-62511260 | None:intergenic | 45.0% | |
| ! | CTATGCTCGTTAGCTCTTCT+TGG | - | chr1_1:62511239-62511258 | Msa0034490:intron | 45.0% |
| !!! | TAATTTATTTATCATTTTTA+TGG | - | chr1_1:62508543-62508562 | Msa0034490:intron | 5.0% |
| !!! | GGTTTTTGGGGTCATAGAGG+TGG | - | chr1_1:62506340-62506359 | Msa0034490:intron | 50.0% |
| GGAGCTTCGTAGAACAAGTG+TGG | + | chr1_1:62506530-62506549 | None:intergenic | 50.0% | |
| ! | GTAGGTCGCTCGAGTTTGTT+GGG | - | chr1_1:62506660-62506679 | Msa0034490:intron | 50.0% |
| ! | GTTTGTTGGGCTTCAACTGC+GGG | - | chr1_1:62506673-62506692 | Msa0034490:intron | 50.0% |
| !! | CTGCTAGTACATGATGGGTC+TGG | - | chr1_1:62507359-62507378 | Msa0034490:intron | 50.0% |
| GAAAGAGTTGCCTGTTTCCC+CGG | - | chr1_1:62507385-62507404 | Msa0034490:intron | 50.0% | |
| CGACTAGGCATTTGGTCGAT+AGG | + | chr1_1:62507518-62507537 | None:intergenic | 50.0% | |
| CGTATGCTCGACTAGGCATT+TGG | + | chr1_1:62507526-62507545 | None:intergenic | 50.0% | |
| TGAGACACGTATGCTCGACT+AGG | + | chr1_1:62507533-62507552 | None:intergenic | 50.0% | |
| GTGTACGATAGGTGACATGC+TGG | + | chr1_1:62507894-62507913 | None:intergenic | 50.0% | |
| GATGGGAGGGAATTAGTTGC+AGG | - | chr1_1:62508229-62508248 | Msa0034490:intron | 50.0% | |
| GTTCTTTCCCTCTGGACTTC+AGG | - | chr1_1:62509296-62509315 | Msa0034490:intron | 50.0% | |
| ! | TTCCCTCTGGACTTCAGGTT+AGG | - | chr1_1:62509301-62509320 | Msa0034490:intron | 50.0% |
| ! | TCCCTCTGGACTTCAGGTTA+GGG | - | chr1_1:62509302-62509321 | Msa0034490:intron | 50.0% |
| TCCCTAACCTGAAGTCCAGA+GGG | + | chr1_1:62509306-62509325 | None:intergenic | 50.0% | |
| AATGCTAAAGACAAGCCGGC+AGG | - | chr1_1:62509374-62509393 | Msa0034490:intron | 50.0% | |
| ATGCTAAAGACAAGCCGGCA+GGG | - | chr1_1:62509375-62509394 | Msa0034490:intron | 50.0% | |
| !! | GGTTTTGATGGGACACCTTG+AGG | - | chr1_1:62509397-62509416 | Msa0034490:intron | 50.0% |
| GAAATAGCGTCCATCTCCAC+GGG | + | chr1_1:62509441-62509460 | None:intergenic | 50.0% | |
| ! | TGCTAGAGCACTTCTGCTGA+TGG | - | chr1_1:62509613-62509632 | Msa0034490:intron | 50.0% |
| ! | GCTAGAGCACTTCTGCTGAT+GGG | - | chr1_1:62509614-62509633 | Msa0034490:intron | 50.0% |
| ! | GTAGCCACTGACTGATCACA+AGG | + | chr1_1:62510275-62510294 | None:intergenic | 50.0% |
| CAGTCAGTGGCTACGTATAG+AGG | - | chr1_1:62510281-62510300 | Msa0034490:five_prime_UTR | 50.0% | |
| TATAACTAGGGGGAAGAGGG+AGG | - | chr1_1:62510658-62510677 | Msa0034490:intron | 50.0% | |
| TTTGGTTATGAACAGCGGCG+AGG | + | chr1_1:62511001-62511020 | None:intergenic | 50.0% | |
| CTAACGAGCATAGGGTGGAA+AGG | + | chr1_1:62511232-62511251 | None:intergenic | 50.0% | |
| AAGAGCTAACGAGCATAGGG+TGG | + | chr1_1:62511237-62511256 | None:intergenic | 50.0% | |
| ! | CTCGTTAGCTCTTCTTGGGA+TGG | - | chr1_1:62511244-62511263 | Msa0034490:intron | 50.0% |
| ! | AGCCTCGTCGGTTAAGAAGA+GGG | - | chr1_1:62511309-62511328 | Msa0034490:intron | 50.0% |
| TACCCTCTTCTTAACCGACG+AGG | + | chr1_1:62511314-62511333 | None:intergenic | 50.0% | |
| GGTAGGTCGCTCGAGTTTGT+TGG | - | chr1_1:62506659-62506678 | Msa0034490:intron | 55.0% | |
| AGCATCTTCACCGGGGAAAC+AGG | + | chr1_1:62507398-62507417 | None:intergenic | 55.0% | |
| TGTTTCCCCGGTGAAGATGC+TGG | - | chr1_1:62507397-62507416 | Msa0034490:intron | 55.0% | |
| GGCCGCGAATCCAATTGTTC+AGG | - | chr1_1:62507422-62507441 | Msa0034490:intron | 55.0% | |
| CCTTCCCCGTCCTGAACAAT+TGG | + | chr1_1:62507435-62507454 | None:intergenic | 55.0% | |
| CCAATTGTTCAGGACGGGGA+AGG | - | chr1_1:62507432-62507451 | Msa0034490:intron | 55.0% | |
| GGCATTTGGTCGATAGGCCA+AGG | + | chr1_1:62507512-62507531 | None:intergenic | 55.0% | |
| ! | ATGGTGCAGTTTGAAGCGGG+TGG | - | chr1_1:62508399-62508418 | Msa0034490:intron | 55.0% |
| GGCCCTATAATTAGGGACGG+AGG | - | chr1_1:62508880-62508899 | Msa0034490:intron | 55.0% | |
| GTCCCTAACCTGAAGTCCAG+AGG | + | chr1_1:62509307-62509326 | None:intergenic | 55.0% | |
| TGCTAAAGACAAGCCGGCAG+GGG | - | chr1_1:62509376-62509395 | Msa0034490:intron | 55.0% | |
| !! | AAGCCGGCAGGGGTTTTGAT+GGG | - | chr1_1:62509386-62509405 | Msa0034490:intron | 55.0% |
| TGTCCCATCAAAACCCCTGC+CGG | + | chr1_1:62509392-62509411 | None:intergenic | 55.0% | |
| ! | ATCTGCTGGGAGCTCTGATG+TGG | - | chr1_1:62511285-62511304 | Msa0034490:intron | 55.0% |
| ! | CAGCCTCGTCGGTTAAGAAG+AGG | - | chr1_1:62511308-62511327 | Msa0034490:intron | 55.0% |
| GCAGGAGATCCACGATGGGT+TGG | - | chr1_1:62508144-62508163 | Msa0034490:intron | 60.0% | |
| !! | CAAGCCGGCAGGGGTTTTGA+TGG | - | chr1_1:62509385-62509404 | Msa0034490:intron | 60.0% |
| CTAGGGGGAAGAGGGAGGAT+AGG | - | chr1_1:62510663-62510682 | Msa0034490:intron | 60.0% | |
| TTATGAACAGCGGCGAGGCC+AGG | + | chr1_1:62510996-62511015 | None:intergenic | 60.0% | |
| CTCTGATGTGGCAGCCTCGT+CGG | - | chr1_1:62511297-62511316 | Msa0034490:intron | 60.0% | |
| TCCCCGGTGAAGATGCTGGC+AGG | - | chr1_1:62507401-62507420 | Msa0034490:intron | 65.0% | |
| GCCTGCCAGCATCTTCACCG+GGG | + | chr1_1:62507405-62507424 | None:intergenic | 65.0% | |
| GGCCTGCCAGCATCTTCACC+GGG | + | chr1_1:62507406-62507425 | None:intergenic | 65.0% | |
| CGGCCTGCCAGCATCTTCAC+CGG | + | chr1_1:62507407-62507426 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 62505871 | 62511525 | 62505871 | ID=Msa0034490;Name=Msa0034490 |
| chr1_1 | mRNA | 62505871 | 62511525 | 62505871 | ID=Msa0034490-mRNA-1;Parent=Msa0034490;Name=Msa0034490-mRNA-1;_AED=0.16;_eAED=0.16;_QI=276|0.87|1|1|0.75|0.77|9|159|469 |
| chr1_1 | exon | 62505871 | 62506233 | 62505871 | ID=Msa0034490-mRNA-1:exon:19777;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62506812 | 62506872 | 62506812 | ID=Msa0034490-mRNA-1:exon:19776;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62507042 | 62507206 | 62507042 | ID=Msa0034490-mRNA-1:exon:19775;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62507868 | 62508043 | 62507868 | ID=Msa0034490-mRNA-1:exon:19774;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62509072 | 62509248 | 62509072 | ID=Msa0034490-mRNA-1:exon:19773;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62509435 | 62509512 | 62509435 | ID=Msa0034490-mRNA-1:exon:19772;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62509615 | 62509734 | 62509615 | ID=Msa0034490-mRNA-1:exon:19771;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62509804 | 62510322 | 62509804 | ID=Msa0034490-mRNA-1:exon:19770;Parent=Msa0034490-mRNA-1 |
| chr1_1 | exon | 62511340 | 62511525 | 62511340 | ID=Msa0034490-mRNA-1:exon:19769;Parent=Msa0034490-mRNA-1 |
| chr1_1 | five_prime_UTR | 62511340 | 62511525 | 62511340 | ID=Msa0034490-mRNA-1:five_prime_utr;Parent=Msa0034490-mRNA-1 |
| chr1_1 | five_prime_UTR | 62510233 | 62510322 | 62510233 | ID=Msa0034490-mRNA-1:five_prime_utr;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62509804 | 62510232 | 62509804 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62509615 | 62509734 | 62509615 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62509435 | 62509512 | 62509435 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62509072 | 62509248 | 62509072 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62507868 | 62508043 | 62507868 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62507042 | 62507206 | 62507042 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62506812 | 62506872 | 62506812 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | CDS | 62506030 | 62506233 | 62506030 | ID=Msa0034490-mRNA-1:cds;Parent=Msa0034490-mRNA-1 |
| chr1_1 | three_prime_UTR | 62505871 | 62506029 | 62505871 | ID=Msa0034490-mRNA-1:three_prime_utr;Parent=Msa0034490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
