Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006040 | Msa0036160 | 0.825910 | 3.621827e-54 | -8.615850e-47 |
| Msa0011960 | Msa0036160 | 0.803364 | 3.610842e-49 | -8.615850e-47 |
| Msa0036160 | Msa0054750 | 0.811482 | 6.848548e-51 | -8.615850e-47 |
| Msa0036160 | Msa0084100 | 0.804307 | 2.300087e-49 | -8.615850e-47 |
| Msa0036160 | Msa0142420 | 0.804842 | 1.779378e-49 | -8.615850e-47 |
| Msa0036160 | Msa0267310 | 0.801499 | 8.748415e-49 | -8.615850e-47 |
| Msa0036160 | Msa0279220 | 0.805568 | 1.253824e-49 | -8.615850e-47 |
| Msa0036160 | Msa0279240 | 0.810189 | 1.304429e-50 | -8.615850e-47 |
| Msa0036160 | Msa0318980 | 0.811700 | 6.141033e-51 | -8.615850e-47 |
| Msa0036160 | Msa0345350 | 0.822813 | 1.937277e-53 | -8.615850e-47 |
| Msa0036160 | Msa0345390 | 0.809055 | 2.285737e-50 | -8.615850e-47 |
| Msa0036160 | Msa0347610 | 0.809462 | 1.870184e-50 | -8.615850e-47 |
| Msa0036160 | Msa0379160 | 0.802534 | 5.360212e-49 | -8.615850e-47 |
| Msa0036160 | Msa0379410 | 0.812616 | 3.876865e-51 | -8.615850e-47 |
| Msa0036160 | Msa0397540 | 0.818515 | 1.882752e-52 | -8.615850e-47 |
| Msa0036160 | Msa0442200 | 0.828931 | 6.833086e-55 | -8.615850e-47 |
| Msa0036160 | Msa0457510 | 0.801895 | 7.256521e-49 | -8.615850e-47 |
| Msa0036160 | Msa0472640 | 0.814896 | 1.219967e-51 | -8.615850e-47 |
| Msa0036160 | Msa0504450 | 0.827226 | 1.758143e-54 | -8.615850e-47 |
| Msa0036160 | Msa0536650 | 0.825545 | 4.421448e-54 | -8.615850e-47 |
| Msa0036160 | Msa0580420 | 0.811329 | 7.392437e-51 | -8.615850e-47 |
| Msa0036160 | Msa0592720 | 0.808935 | 2.425522e-50 | -8.615850e-47 |
| Msa0036160 | Msa0610430 | 0.805819 | 1.110425e-49 | -8.615850e-47 |
| Msa0036160 | Msa0632870 | 0.849077 | 4.076501e-60 | -8.615850e-47 |
| Msa0036160 | Msa0660490 | 0.823591 | 1.275525e-53 | -8.615850e-47 |
| Msa0036160 | Msa0661210 | 0.816583 | 5.132590e-52 | -8.615850e-47 |
| Msa0036160 | Msa0671740 | 0.817333 | 3.481360e-52 | -8.615850e-47 |
| Msa0036160 | Msa0692830 | 0.820175 | 7.881953e-53 | -8.615850e-47 |
| Msa0036160 | Msa0692950 | 0.808751 | 2.655233e-50 | -8.615850e-47 |
| Msa0036160 | Msa0738990 | 0.836531 | 8.859950e-57 | -8.615850e-47 |
| Msa0036160 | Msa0784860 | 0.813260 | 2.801236e-51 | -8.615850e-47 |
| Msa0036160 | Msa0795920 | 0.832375 | 9.799286e-56 | -8.615850e-47 |
| Msa0036160 | Msa0859380 | 0.844263 | 8.426635e-59 | -8.615850e-47 |
| Msa0036160 | Msa0870150 | 0.843419 | 1.417627e-58 | -8.615850e-47 |
| Msa0036160 | Msa0909110 | 0.811880 | 5.610822e-51 | -8.615850e-47 |
| Msa0036160 | Msa0935850 | 0.836881 | 7.214456e-57 | -8.615850e-47 |
| Msa0036160 | Msa0944550 | 0.815295 | 9.945129e-52 | -8.615850e-47 |
| Msa0036160 | Msa1009820 | 0.814751 | 1.313669e-51 | -8.615850e-47 |
| Msa0036160 | Msa1012830 | 0.818089 | 2.350608e-52 | -8.615850e-47 |
| Msa0036160 | Msa1051200 | 0.831259 | 1.846877e-55 | -8.615850e-47 |
| Msa0036160 | Msa1054410 | 0.803860 | 2.849867e-49 | -8.615850e-47 |
| Msa0036160 | Msa1082250 | 0.805415 | 1.350014e-49 | -8.615850e-47 |
| Msa0036160 | Msa1137700 | 0.819058 | 1.417345e-52 | -8.615850e-47 |
| Msa0036160 | Msa1170690 | 0.816922 | 4.306941e-52 | -8.615850e-47 |
| Msa0036160 | Msa1174870 | 0.841251 | 5.321785e-58 | -8.615850e-47 |
| Msa0036160 | Msa1224810 | 0.811877 | 5.619688e-51 | -8.615850e-47 |
| Msa0036160 | Msa1234690 | 0.827007 | 1.984627e-54 | -8.615850e-47 |
| Msa0036160 | Msa1234730 | 0.844470 | 7.410187e-59 | -8.615850e-47 |
| Msa0036160 | Msa1260130 | 0.817333 | 3.482602e-52 | -8.615850e-47 |
| Msa0036160 | Msa1262920 | 0.846663 | 1.885390e-59 | -8.615850e-47 |
| Msa0036160 | Msa1300050 | 0.811056 | 8.474358e-51 | -8.615850e-47 |
| Msa0036160 | Msa1302100 | 0.857253 | 1.851358e-62 | -8.615850e-47 |
| Msa0036160 | Msa1315110 | 0.848846 | 4.724868e-60 | -8.615850e-47 |
| Msa0036160 | Msa1359630 | 0.814166 | 1.769150e-51 | -8.615850e-47 |
| Msa0036160 | Msa1398800 | 0.803105 | 4.085261e-49 | -8.615850e-47 |
| Msa0036160 | Msa1403340 | 0.824840 | 6.491119e-54 | -8.615850e-47 |
| Msa0036160 | Msa1437170 | 0.831682 | 1.453111e-55 | -8.615850e-47 |
| Msa0036160 | Msa1465960 | 0.800033 | 1.742048e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036160 | MtrunA17_Chr1g0198321 | 93.991 | 699 | 41 | 1 | 1 | 699 | 1 | 698 | 0.0 | 1310 |
| Msa0036160 | MtrunA17_Chr1g0171321 | 44.177 | 747 | 343 | 16 | 4 | 688 | 2 | 736 | 0.0 | 549 |
| Msa0036160 | MtrunA17_Chr1g0181331 | 56.349 | 126 | 35 | 3 | 503 | 628 | 1 | 106 | 1.93e-37 | 135 |
| Msa0036160 | MtrunA17_Chr1g0148541 | 29.752 | 242 | 161 | 4 | 362 | 596 | 1137 | 1376 | 4.02e-26 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036160 | AT5G04670.2 | 34.854 | 789 | 379 | 22 | 4 | 689 | 2 | 758 | 2.13e-121 | 380 |
| Msa0036160 | AT5G04670.1 | 34.854 | 789 | 379 | 22 | 4 | 689 | 2 | 758 | 2.13e-121 | 380 |
| Msa0036160 | AT4G32620.2 | 28.669 | 293 | 184 | 7 | 328 | 607 | 1016 | 1296 | 4.18e-25 | 112 |
| Msa0036160 | AT4G32620.1 | 28.669 | 293 | 184 | 7 | 328 | 607 | 1016 | 1296 | 4.21e-25 | 112 |
Find 145 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCCTTATAAAGATTCTTAA+AGG | 0.187141 | 1_1:+64582761 | None:intergenic |
| TGCCTTTAAGAATCTTTATA+AGG | 0.215417 | 1_1:-64582763 | Msa0036160:CDS |
| AACAACAACAATCAACAATA+TGG | 0.240510 | 1_1:+64585079 | None:intergenic |
| GCAATTTATGACATGGATTC+AGG | 0.243207 | 1_1:-64582573 | Msa0036160:CDS |
| ACGTCTGGGTTTCTTATTAG+AGG | 0.290091 | 1_1:+64583118 | None:intergenic |
| TTGAGTCTGACAGGTGTTAT+AGG | 0.291885 | 1_1:-64582989 | Msa0036160:CDS |
| TTACTCATGTTCTTTGTTGA+AGG | 0.301868 | 1_1:+64583197 | None:intergenic |
| AACTTACCTTGCAAAACATT+TGG | 0.307504 | 1_1:+64581923 | None:intergenic |
| GGAAAGCTTATAGCAGAAAA+AGG | 0.328154 | 1_1:-64584715 | Msa0036160:CDS |
| TAGAAGCTGTACATGGTTAT+TGG | 0.339423 | 1_1:-64582377 | Msa0036160:CDS |
| TAATTATTATGATTAGAATA+AGG | 0.345172 | 1_1:+64580317 | None:intergenic |
| TTTAACATGGGTGTACCTAT+TGG | 0.349860 | 1_1:+64582842 | None:intergenic |
| CGGCAGTTATGGCCGGATTC+CGG | 0.351200 | 1_1:-64584812 | Msa0036160:CDS |
| TTGAGAACCGTTGTGATGTT+TGG | 0.356274 | 1_1:-64584554 | Msa0036160:CDS |
| ATATATTTCGCAGCAGGAAT+TGG | 0.357826 | 1_1:+64582720 | None:intergenic |
| AAGAGGGATACGATTCTTAC+AGG | 0.358780 | 1_1:-64584468 | Msa0036160:intron |
| CCGTCTATTTCAATAACTTC+AGG | 0.362349 | 1_1:+64583347 | None:intergenic |
| GTCTCACTGTGAATTCAATT+CGG | 0.365320 | 1_1:-64584943 | Msa0036160:five_prime_UTR |
| TGAATCAATTGTTGATGCTT+TGG | 0.367100 | 1_1:-64582487 | Msa0036160:CDS |
| GCCTTTAAGAATCTTTATAA+GGG | 0.372100 | 1_1:-64582762 | Msa0036160:CDS |
| AGGCAAACCACAACGGTGTT+TGG | 0.384459 | 1_1:-64584884 | Msa0036160:CDS |
| GATGCATAAACAGAACAAAT+AGG | 0.390898 | 1_1:+64584491 | None:intergenic |
| GAGAACTTCACCTAGGATAA+AGG | 0.391799 | 1_1:-64583231 | Msa0036160:CDS |
| AAACCTTGTTCTGAGGATAT+TGG | 0.398494 | 1_1:-64584605 | Msa0036160:CDS |
| TGAGTCTGACAGGTGTTATA+GGG | 0.399315 | 1_1:-64582988 | Msa0036160:CDS |
| AGTTTGCTAATCGTCAGAAT+TGG | 0.410244 | 1_1:-64582788 | Msa0036160:CDS |
| CTCAGAAGTTTCTTTCATGA+AGG | 0.418411 | 1_1:+64583391 | None:intergenic |
| TCAAAGTTAGCTGTTCGAAA+TGG | 0.419052 | 1_1:-64583293 | Msa0036160:CDS |
| TCGGAGATGTTGCCGGAATC+CGG | 0.421559 | 1_1:+64584800 | None:intergenic |
| TCGATCATCGGAGATGTTGC+CGG | 0.422081 | 1_1:+64584793 | None:intergenic |
| CGCTTCTATTTATTTGACTC+GGG | 0.424966 | 1_1:+64581951 | None:intergenic |
| GGAACAGAGAGAAAGAGAGG+GGG | 0.429627 | 1_1:+64585159 | None:intergenic |
| CATTATCTTATCAGCCTTGA+GGG | 0.431408 | 1_1:+64582878 | None:intergenic |
| GTAAAACTCATCACTGTTTG+TGG | 0.433346 | 1_1:+64582617 | None:intergenic |
| GAGGGAACAGAGAGAAAGAG+AGG | 0.436683 | 1_1:+64585156 | None:intergenic |
| AAAATGATCTCATTAATCAA+TGG | 0.437286 | 1_1:-64582822 | Msa0036160:CDS |
| TACGTTCAGGGCGGCAGTTA+TGG | 0.439176 | 1_1:-64584823 | Msa0036160:CDS |
| ACAATAACCGCAATCTTACA+TGG | 0.439837 | 1_1:+64584629 | None:intergenic |
| TCGCTTCTATTTATTTGACT+CGG | 0.443210 | 1_1:+64581950 | None:intergenic |
| AAATGATCTCATTAATCAAT+GGG | 0.445112 | 1_1:-64582821 | Msa0036160:CDS |
| CGGTTTCTTCCTTCGATCAT+CGG | 0.445749 | 1_1:+64584781 | None:intergenic |
| TCTCACTGTGAATTCAATTC+GGG | 0.445754 | 1_1:-64584942 | Msa0036160:five_prime_UTR |
| ATAATCATTCATCGCTGCTT+AGG | 0.449647 | 1_1:-64582338 | Msa0036160:CDS |
| CGTCCACCCTTTGAATCAAA+AGG | 0.450079 | 1_1:+64583164 | None:intergenic |
| TGGATTCAGGTGATGAAGAT+TGG | 0.451148 | 1_1:-64582560 | Msa0036160:CDS |
| GCAACTGTTAGTCAAACGTC+TGG | 0.453001 | 1_1:+64583103 | None:intergenic |
| GGGAACAGAGAGAAAGAGAG+GGG | 0.453525 | 1_1:+64585158 | None:intergenic |
| GACAGGTGTTATAGGGTAGA+AGG | 0.454707 | 1_1:-64582981 | Msa0036160:CDS |
| TCAGAAGAAACGCCCAAGTC+AGG | 0.458748 | 1_1:-64582945 | Msa0036160:CDS |
| TGAGACCATGCTCTTCCAAT+AGG | 0.459852 | 1_1:-64582857 | Msa0036160:CDS |
| TTCTGAGCTTCCTTTATCCT+AGG | 0.460176 | 1_1:+64583221 | None:intergenic |
| AAGATGCCATTCTCCTGACT+TGG | 0.460644 | 1_1:+64582932 | None:intergenic |
| CGTCTATTTCAATAACTTCA+GGG | 0.465966 | 1_1:+64583348 | None:intergenic |
| TGTGAATTCAATTCGGGAAG+AGG | 0.478611 | 1_1:-64584936 | Msa0036160:five_prime_UTR |
| ACTTCACATACGCCTGGTAC+TGG | 0.480829 | 1_1:+64582696 | None:intergenic |
| CATCTTGCAGTAAAGAAAGA+TGG | 0.486109 | 1_1:-64582915 | Msa0036160:CDS |
| ATGACTGAAGCAACTCAAGC+TGG | 0.488992 | 1_1:-64580396 | Msa0036160:CDS |
| CAGTTTCTTGATTGACTGGT+AGG | 0.489008 | 1_1:-64580348 | Msa0036160:exon |
| GTTCTGTTACTGCCAACGTT+GGG | 0.489791 | 1_1:-64583631 | Msa0036160:CDS |
| AGGACAGTTTCTTGATTGAC+TGG | 0.490167 | 1_1:-64580352 | Msa0036160:exon |
| ACAACAACAATCAACAATAT+GGG | 0.491111 | 1_1:+64585080 | None:intergenic |
| AGGGAACAGAGAGAAAGAGA+GGG | 0.493572 | 1_1:+64585157 | None:intergenic |
| GGAGTCGTCAAAGGCGGTGG+CGG | 0.494775 | 1_1:-64584863 | Msa0036160:CDS |
| TATCACTGCCATCGTTATGC+AGG | 0.495048 | 1_1:+64584747 | None:intergenic |
| CCGGACGTGTGTTACGTTCA+GGG | 0.496740 | 1_1:-64584835 | Msa0036160:CDS |
| CAGAGCAATGACATGTAAAA+CGG | 0.496775 | 1_1:-64582595 | Msa0036160:CDS |
| ATAAGAATCCGGTCGATTGA+AGG | 0.501681 | 1_1:+64582644 | None:intergenic |
| GAGGAAGCGGGAAAGAGAAG+AGG | 0.501729 | 1_1:+64585137 | None:intergenic |
| ACCGGACGTGTGTTACGTTC+AGG | 0.503995 | 1_1:-64584836 | Msa0036160:CDS |
| TTTGGAGTCGTCAAAGGCGG+TGG | 0.505206 | 1_1:-64584866 | Msa0036160:CDS |
| AGTGAAGGCTTGAGAACAAA+TGG | 0.505989 | 1_1:+64582001 | None:intergenic |
| TTCAGGGCGGCAGTTATGGC+CGG | 0.507992 | 1_1:-64584819 | Msa0036160:CDS |
| TACCGTTCCCTTCAATCGAC+CGG | 0.509691 | 1_1:-64582652 | Msa0036160:CDS |
| TTTGTGGATATATAAGAATC+CGG | 0.511130 | 1_1:+64582633 | None:intergenic |
| CGATGATCGAAGGAAGAAAC+CGG | 0.515874 | 1_1:-64584780 | Msa0036160:CDS |
| TGCATAACGATGGCAGTGAT+AGG | 0.520423 | 1_1:-64584745 | Msa0036160:CDS |
| TAAGAATCCGGTCGATTGAA+GGG | 0.524732 | 1_1:+64582645 | None:intergenic |
| TGACAGACTTTGCCTCTGAA+AGG | 0.525131 | 1_1:+64583069 | None:intergenic |
| TCATTATCTTATCAGCCTTG+AGG | 0.527722 | 1_1:+64582877 | None:intergenic |
| GGATTCAGGTGATGAAGATT+GGG | 0.529751 | 1_1:-64582559 | Msa0036160:CDS |
| TGGAGGATCTGTAGATGCAT+TGG | 0.533088 | 1_1:-64580376 | Msa0036160:CDS |
| GACCTCTTCTTTCGCAGTGA+AGG | 0.533503 | 1_1:+64581986 | None:intergenic |
| ACTGGAATATATTTCGCAGC+AGG | 0.536483 | 1_1:+64582714 | None:intergenic |
| GCGAAATATATTCCAGTACC+AGG | 0.540796 | 1_1:-64582708 | Msa0036160:CDS |
| CCCTGAACGTAACACACGTC+CGG | 0.545468 | 1_1:+64584835 | None:intergenic |
| TATTGTGAAACCTTGTTCTG+AGG | 0.546870 | 1_1:-64584612 | Msa0036160:CDS |
| GATGTTTGGACTCACATTCG+AGG | 0.547399 | 1_1:-64584540 | Msa0036160:CDS |
| TGCAGATTTAGCAGTCTACA+AGG | 0.562190 | 1_1:-64580436 | Msa0036160:CDS |
| TATTGATTGTTGAGTCTGAC+AGG | 0.562502 | 1_1:-64582998 | Msa0036160:CDS |
| ATCTTGCAGTAAAGAAAGAT+GGG | 0.562948 | 1_1:-64582914 | Msa0036160:CDS |
| CACCGTTGTGGTTTGCCTCG+TGG | 0.564346 | 1_1:+64584889 | None:intergenic |
| TTATGCAGGTTTGTCTTCGC+CGG | 0.564415 | 1_1:+64584761 | None:intergenic |
| CACAAGTTTAAACCTTTCAG+AGG | 0.565112 | 1_1:-64583081 | Msa0036160:CDS |
| GGTTCTGTTACTGCCAACGT+TGG | 0.565488 | 1_1:-64583632 | Msa0036160:CDS |
| AGGAAGCGGGAAAGAGAAGA+GGG | 0.566095 | 1_1:+64585138 | None:intergenic |
| TTCATTTACAGTAGCTGCTG+AGG | 0.566104 | 1_1:-64580541 | Msa0036160:intron |
| GTTGCTATTGATATTGAAGA+CGG | 0.567379 | 1_1:-64583461 | Msa0036160:CDS |
| TAAGAATCTTGTTAGCAAGA+AGG | 0.568720 | 1_1:-64582403 | Msa0036160:CDS |
| GTTTCAAGAACATGTTTCAG+AGG | 0.568874 | 1_1:-64582517 | Msa0036160:CDS |
| GTTTGCCTCGTGGCAACCGA+TGG | 0.568919 | 1_1:+64584899 | None:intergenic |
| AGATGCCATTCTCCTGACTT+GGG | 0.569885 | 1_1:+64582933 | None:intergenic |
| CACGTCTCTACATTCTGCAG+TGG | 0.569908 | 1_1:-64583534 | Msa0036160:CDS |
| ATCGATATTTAGAGAGAGAG+AGG | 0.571511 | 1_1:+64585118 | None:intergenic |
| AAACGCCCAAGTCAGGAGAA+TGG | 0.572896 | 1_1:-64582938 | Msa0036160:CDS |
| TTCAGAGGCAAAGTCTGTCA+TGG | 0.574366 | 1_1:-64583066 | Msa0036160:CDS |
| GGATCTGTAGATGCATTGGC+AGG | 0.577953 | 1_1:-64580372 | Msa0036160:CDS |
| TGTTCTGTTTATGCATCAAG+AGG | 0.580200 | 1_1:-64584485 | Msa0036160:CDS |
| AAAGGCGGTGGCGGAGACAC+CGG | 0.583024 | 1_1:-64584854 | Msa0036160:CDS |
| AGCCTTCACTGCGAAAGAAG+AGG | 0.583942 | 1_1:-64581988 | Msa0036160:CDS |
| TCAGAGACTTCACATACGCC+TGG | 0.587136 | 1_1:+64582690 | None:intergenic |
| CCTTTAAGAATCTTTATAAG+GGG | 0.590103 | 1_1:-64582761 | Msa0036160:CDS |
| AGCAGCTGCAAATGAATCAA+CGG | 0.591487 | 1_1:-64580505 | Msa0036160:CDS |
| TGTAGAGACGTGAAACATTG+AGG | 0.592452 | 1_1:+64583545 | None:intergenic |
| GTCTATTTCAATAACTTCAG+GGG | 0.592740 | 1_1:+64583349 | None:intergenic |
| GACGACTCCAAACACCGTTG+TGG | 0.593876 | 1_1:+64584877 | None:intergenic |
| ACGGTGTTTGGAGTCGTCAA+AGG | 0.595511 | 1_1:-64584872 | Msa0036160:CDS |
| GGTTGAAATGCCATCACCAT+CGG | 0.595783 | 1_1:-64584915 | Msa0036160:exon |
| GATTCAACGACAAAGGATGA+AGG | 0.598555 | 1_1:-64584654 | Msa0036160:CDS |
| ATGGTTATTGGATGAGAAAG+CGG | 0.601479 | 1_1:-64582365 | Msa0036160:CDS |
| TAAAACGGCAATTTATGACA+TGG | 0.604442 | 1_1:-64582580 | Msa0036160:CDS |
| GCAACATCTCCGATGATCGA+AGG | 0.609415 | 1_1:-64584790 | Msa0036160:CDS |
| CAACTGTTAGTCAAACGTCT+GGG | 0.609687 | 1_1:+64583104 | None:intergenic |
| CCTGAAGTTATTGAAATAGA+CGG | 0.609763 | 1_1:-64583347 | Msa0036160:CDS |
| CTCGTGGCAACCGATGGTGA+TGG | 0.611593 | 1_1:+64584905 | None:intergenic |
| ACGCTCGACGCATTCAGATG+AGG | 0.612215 | 1_1:-64583253 | Msa0036160:CDS |
| GTTGACTCAATGCACCCTCA+AGG | 0.616453 | 1_1:-64582892 | Msa0036160:CDS |
| GTTCTGTTTATGCATCAAGA+GGG | 0.617668 | 1_1:-64584484 | Msa0036160:CDS |
| GAATTCAACAGAACTCGGAT+CGG | 0.631609 | 1_1:+64584993 | None:intergenic |
| TGATCTCATTAATCAATGGG+TGG | 0.640024 | 1_1:-64582818 | Msa0036160:CDS |
| AAGGCTGTAGAAGCTGTACA+TGG | 0.640142 | 1_1:-64582384 | Msa0036160:CDS |
| ATCCGGTCGATTGAAGGGAA+CGG | 0.652409 | 1_1:+64582650 | None:intergenic |
| AAACCAATATCCTCAGAACA+AGG | 0.653855 | 1_1:+64584602 | None:intergenic |
| ACTATATTAATCATATAACC+CGG | 0.655191 | 1_1:-64580295 | Msa0036160:three_prime_UTR |
| GTGTACCTATTGGAAGAGCA+TGG | 0.656582 | 1_1:+64582852 | None:intergenic |
| GAGTTGAATTCAACAGAACT+CGG | 0.658279 | 1_1:+64584988 | None:intergenic |
| ACTGAAGCAACTCAAGCTGG+AGG | 0.660051 | 1_1:-64580393 | Msa0036160:CDS |
| AAACTGGCAAATCCCAACGT+TGG | 0.662902 | 1_1:+64583619 | None:intergenic |
| GAAGGATCCATGTAAGATTG+CGG | 0.664528 | 1_1:-64584636 | Msa0036160:CDS |
| GTGTTTGGAGTCGTCAAAGG+CGG | 0.675172 | 1_1:-64584869 | Msa0036160:CDS |
| AAGACAAACCTGCATAACGA+TGG | 0.678771 | 1_1:-64584755 | Msa0036160:CDS |
| AGATGAGGAGAACTTCACCT+AGG | 0.682586 | 1_1:-64583238 | Msa0036160:CDS |
| CATCACCATCGGTTGCCACG+AGG | 0.704977 | 1_1:-64584904 | Msa0036160:CDS |
| TGCCACGAGGCAAACCACAA+CGG | 0.717744 | 1_1:-64584891 | Msa0036160:CDS |
| TGTGAGTCCAAACATCACAA+CGG | 0.752344 | 1_1:+64584547 | None:intergenic |
| GACGTGTGTTACGTTCAGGG+CGG | 0.770842 | 1_1:-64584832 | Msa0036160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGTAAATTTTTTTTTGTA+GGG | + | chr1_1:64583752-64583771 | None:intergenic | 10.0% |
| !!! | ATAAGTAAATTTTTTTTTGT+AGG | + | chr1_1:64583753-64583772 | None:intergenic | 10.0% |
| !!! | AAACAAAATTTATTTTAGTA+GGG | + | chr1_1:64583785-64583804 | None:intergenic | 10.0% |
| !!! | TAAACAAAATTTATTTTAGT+AGG | + | chr1_1:64583786-64583805 | None:intergenic | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr1_1:64583814-64583833 | None:intergenic | 10.0% |
| !! | GGTTAAAAAAAAAAAAAAAA+AGG | + | chr1_1:64584246-64584265 | None:intergenic | 10.0% |
| !! | TAATTATTATGATTAGAATA+AGG | + | chr1_1:64585024-64585043 | None:intergenic | 10.0% |
| !! | TGCATTAAAAACATAATATA+AGG | + | chr1_1:64581021-64581040 | None:intergenic | 15.0% |
| !!! | TTTTATTTATTTTTTGACAG+TGG | - | chr1_1:64581120-64581139 | Msa0036160:intron | 15.0% |
| !!! | TTTTGTCAATTTAATATCTT+TGG | - | chr1_1:64581150-64581169 | Msa0036160:intron | 15.0% |
| !! | ATTTATGGTAAAAAAATAAG+TGG | - | chr1_1:64581273-64581292 | Msa0036160:intron | 15.0% |
| !! | TTTATGGTAAAAAAATAAGT+GGG | - | chr1_1:64581274-64581293 | Msa0036160:intron | 15.0% |
| !!! | TTTAATATTTTTCCTGTAAA+TGG | - | chr1_1:64581307-64581326 | Msa0036160:intron | 15.0% |
| !!! | TTAATATTTTTCCTGTAAAT+GGG | - | chr1_1:64581308-64581327 | Msa0036160:intron | 15.0% |
| !!! | TTTGATTTCTTTTTCAATTT+CGG | - | chr1_1:64583150-64583169 | Msa0036160:CDS | 15.0% |
| !! | TATTATTTCATATTGTTAAC+AGG | - | chr1_1:64583441-64583460 | Msa0036160:CDS | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1_1:64584136-64584155 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr1_1:64583945-64583964 | Msa0036160:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr1_1:64583980-64583999 | Msa0036160:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr1_1:64584064-64584083 | Msa0036160:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr1_1:64584136-64584155 | Msa0036160:intron | 15.0% |
| !! | AAAAAAAAAAAGGAAGATAT+AGG | + | chr1_1:64584236-64584255 | None:intergenic | 15.0% |
| !! | AAACGATATAAACAAAAAAT+AGG | + | chr1_1:64584414-64584433 | None:intergenic | 15.0% |
| !!! | TCCTATGTTTTTTATTTTGT+TGG | - | chr1_1:64580930-64580949 | Msa0036160:intron | 20.0% |
| !! | ACCAACAAAATAAAAAACAT+AGG | + | chr1_1:64580934-64580953 | None:intergenic | 20.0% |
| !! | TGTAATGAATTGTAAATTGA+TGG | - | chr1_1:64581077-64581096 | Msa0036160:intron | 20.0% |
| !! | AAATAAATAAATGTAGGGAT+AGG | + | chr1_1:64581232-64581251 | None:intergenic | 20.0% |
| !! | TTATGGTAAAAAAATAAGTG+GGG | - | chr1_1:64581275-64581294 | Msa0036160:intron | 20.0% |
| !! | TTACAGGAAAAATATTAAAC+AGG | + | chr1_1:64581306-64581325 | None:intergenic | 20.0% |
| !!! | CAATGTATGATATTGATTTT+TGG | - | chr1_1:64581512-64581531 | Msa0036160:intron | 20.0% |
| !! | GATTTATAATTCATTGAGAT+TGG | - | chr1_1:64581553-64581572 | Msa0036160:intron | 20.0% |
| !! | TAAGTTGTATATATTACGAA+AGG | - | chr1_1:64581582-64581601 | Msa0036160:intron | 20.0% |
| !!! | TAATGAGATCATTTTAACAT+GGG | + | chr1_1:64582511-64582530 | None:intergenic | 20.0% |
| !!! | TTAATGAGATCATTTTAACA+TGG | + | chr1_1:64582512-64582531 | None:intergenic | 20.0% |
| !! | AAAATGATCTCATTAATCAA+TGG | - | chr1_1:64582516-64582535 | Msa0036160:CDS | 20.0% |
| !! | AAATGATCTCATTAATCAAT+GGG | - | chr1_1:64582517-64582536 | Msa0036160:CDS | 20.0% |
| !! | ATGAAAAAACTGTGATTTAT+TGG | - | chr1_1:64582910-64582929 | Msa0036160:CDS | 20.0% |
| !! | AAAAAAAACCAAAACTATGA+CGG | + | chr1_1:64583288-64583307 | None:intergenic | 20.0% |
| !!! | ACTCATATTCTTTTGTTTAT+AGG | - | chr1_1:64583648-64583667 | Msa0036160:intron | 20.0% |
| !!! | CTCATATTCTTTTGTTTATA+GGG | - | chr1_1:64583649-64583668 | Msa0036160:intron | 20.0% |
| !!! | TATAGGGTTAATTATGTTTT+TGG | - | chr1_1:64583665-64583684 | Msa0036160:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr1_1:64584034-64584053 | None:intergenic | 20.0% |
| !! | AATTCAAGCAATATAAACAA+GGG | + | chr1_1:64584210-64584229 | None:intergenic | 20.0% |
| !! | AAATTCAAGCAATATAAACA+AGG | + | chr1_1:64584211-64584230 | None:intergenic | 20.0% |
| !! | ACTATATTAATCATATAACC+CGG | - | chr1_1:64585043-64585062 | Msa0036160:five_prime_UTR | 20.0% |
| !! | ATAAAAAAATAAGAAGAGCT+AGG | + | chr1_1:64585094-64585113 | None:intergenic | 20.0% |
| ! | ACAACAACAATCAACAATAT+GGG | + | chr1_1:64580261-64580280 | None:intergenic | 25.0% |
| ! | AACAACAACAATCAACAATA+TGG | + | chr1_1:64580262-64580281 | None:intergenic | 25.0% |
| ! | ACAAACTTTAGCATAATTCA+AGG | + | chr1_1:64580909-64580928 | None:intergenic | 25.0% |
| !!! | ATGAGCGTTATTTGTTTTTT+TGG | + | chr1_1:64581399-64581418 | None:intergenic | 25.0% |
| ! | TCAATAGTTGTTATCTACTA+AGG | - | chr1_1:64581454-64581473 | Msa0036160:intron | 25.0% |
| ! | CAATAGTTGTTATCTACTAA+GGG | - | chr1_1:64581455-64581474 | Msa0036160:intron | 25.0% |
| ! | AATAGTTGTTATCTACTAAG+GGG | - | chr1_1:64581456-64581475 | Msa0036160:intron | 25.0% |
| ! | ATGAGTTTAATGTTCTTTCA+GGG | - | chr1_1:64581685-64581704 | Msa0036160:intron | 25.0% |
| ! | GAAAAATCTACACAAAACAA+TGG | + | chr1_1:64581766-64581785 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAGATATATGTTC+AGG | - | chr1_1:64581824-64581843 | Msa0036160:intron | 25.0% |
| !!! | ATTTTTTCTTGCATGTAATC+TGG | - | chr1_1:64581849-64581868 | Msa0036160:intron | 25.0% |
| !!! | GAATTACCTTTTGATTCAAA+GGG | - | chr1_1:64582168-64582187 | Msa0036160:intron | 25.0% |
| !! | TGCCTTTAAGAATCTTTATA+AGG | - | chr1_1:64582575-64582594 | Msa0036160:CDS | 25.0% |
| !! | GCCTTTAAGAATCTTTATAA+GGG | - | chr1_1:64582576-64582595 | Msa0036160:CDS | 25.0% |
| !! | CCTTTAAGAATCTTTATAAG+GGG | - | chr1_1:64582577-64582596 | Msa0036160:CDS | 25.0% |
| ! | TTTGTGGATATATAAGAATC+CGG | + | chr1_1:64582708-64582727 | None:intergenic | 25.0% |
| !!! | AATTGAGCATTGAAATGTTT+CGG | + | chr1_1:64583068-64583087 | None:intergenic | 25.0% |
| !! | TTTATTAGTTTGAGCTGTTA+AGG | - | chr1_1:64583183-64583202 | Msa0036160:CDS | 25.0% |
| !!! | GTTTTTGGTATTTTAACTTG+TGG | - | chr1_1:64583520-64583539 | Msa0036160:CDS | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr1_1:64584010-64584029 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr1_1:64584075-64584094 | Msa0036160:intron | 25.0% |
| !! | ACAAGGGTTAATTATGTTTT+TGG | + | chr1_1:64584194-64584213 | None:intergenic | 25.0% |
| !! | ACTAATAATCTAGAGTTTGA+CGG | - | chr1_1:64584290-64584309 | Msa0036160:intron | 25.0% |
| !! | TAAATGTTTTCAAACTCCTT+TGG | + | chr1_1:64584362-64584381 | None:intergenic | 25.0% |
| ! | CATTTAATGATAAAGAGTGA+TGG | - | chr1_1:64584376-64584395 | Msa0036160:intron | 25.0% |
| ! | ATAAACAAAAAATAGGCAGT+GGG | + | chr1_1:64584407-64584426 | None:intergenic | 25.0% |
| ! | TATAAACAAAAAATAGGCAG+TGG | + | chr1_1:64584408-64584427 | None:intergenic | 25.0% |
| ! | AAAGAAAAAAAAATAGGCCA+AGG | + | chr1_1:64584504-64584523 | None:intergenic | 25.0% |
| ! | GAGGGAAAAGAAAAAAAAAT+AGG | + | chr1_1:64584510-64584529 | None:intergenic | 25.0% |
| ! | TGAAATATGAGATCTTGAAT+TGG | - | chr1_1:64584571-64584590 | Msa0036160:CDS | 25.0% |
| !!! | CCAAAAACAATAAAAGTATC+TGG | + | chr1_1:64584633-64584652 | None:intergenic | 25.0% |
| !! | CCAGATACTTTTATTGTTTT+TGG | - | chr1_1:64584630-64584649 | Msa0036160:CDS | 25.0% |
| !!! | TGTTTTTGGATTATTGTTTC+TGG | - | chr1_1:64584644-64584663 | Msa0036160:CDS | 25.0% |
| ! | TCTTAATACAGTATCTTGTT+TGG | - | chr1_1:64584675-64584694 | Msa0036160:CDS | 25.0% |
| !!! | TTTGAGTTGACTACAAAAAA+AGG | - | chr1_1:64584702-64584721 | Msa0036160:CDS | 25.0% |
| ! | ATTGTATATGTGTCTATAGA+TGG | - | chr1_1:64584749-64584768 | Msa0036160:CDS | 25.0% |
| ! | TACTGTAAATGAATAGATCA+GGG | + | chr1_1:64584790-64584809 | None:intergenic | 25.0% |
| ! | ACAACGAAAGTGAAATTTTC+AGG | - | chr1_1:64580662-64580681 | Msa0036160:intron | 30.0% |
| !! | GTTTTCGTGTTTCTTGTTTA+TGG | - | chr1_1:64580759-64580778 | Msa0036160:intron | 30.0% |
| GATGCATAAACAGAACAAAT+AGG | + | chr1_1:64580850-64580869 | None:intergenic | 30.0% | |
| ! | ATATTTTTCCTGTAAATGGG+TGG | - | chr1_1:64581311-64581330 | Msa0036160:intron | 30.0% |
| GTAAGATCAAGGTGTAAATT+AGG | + | chr1_1:64581660-64581679 | None:intergenic | 30.0% | |
| ACTCATGTTATGTAAGATCA+AGG | + | chr1_1:64581671-64581690 | None:intergenic | 30.0% | |
| CATGAGTTTAATGTTCTTTC+AGG | - | chr1_1:64581684-64581703 | Msa0036160:intron | 30.0% | |
| ! | GTTGCTATTGATATTGAAGA+CGG | - | chr1_1:64581877-64581896 | Msa0036160:intron | 30.0% |
| !! | TGATCTATCAGATTTTGAGA+TGG | - | chr1_1:64581903-64581922 | Msa0036160:intron | 30.0% |
| GTCTATTTCAATAACTTCAG+GGG | + | chr1_1:64581992-64582011 | None:intergenic | 30.0% | |
| CGTCTATTTCAATAACTTCA+GGG | + | chr1_1:64581993-64582012 | None:intergenic | 30.0% | |
| CCTGAAGTTATTGAAATAGA+CGG | - | chr1_1:64581991-64582010 | Msa0036160:CDS | 30.0% | |
| TTACTCATGTTCTTTGTTGA+AGG | + | chr1_1:64582144-64582163 | None:intergenic | 30.0% | |
| !! | CGAATTACCTTTTGATTCAA+AGG | - | chr1_1:64582167-64582186 | Msa0036160:intron | 30.0% |
| ATCTTGCAGTAAAGAAAGAT+GGG | - | chr1_1:64582424-64582443 | Msa0036160:CDS | 30.0% | |
| CCCCTTATAAAGATTCTTAA+AGG | + | chr1_1:64582580-64582599 | None:intergenic | 30.0% | |
| TAAAACGGCAATTTATGACA+TGG | - | chr1_1:64582758-64582777 | Msa0036160:CDS | 30.0% | |
| TGAATCAATTGTTGATGCTT+TGG | - | chr1_1:64582851-64582870 | Msa0036160:CDS | 30.0% | |
| TAAGAATCTTGTTAGCAAGA+AGG | - | chr1_1:64582935-64582954 | Msa0036160:CDS | 30.0% | |
| ! | TGTCTATTTCGATTTTCCAA+AGG | + | chr1_1:64583113-64583132 | None:intergenic | 30.0% |
| !! | TCGAAATAGACAAGTTTTGT+TGG | - | chr1_1:64583121-64583140 | Msa0036160:CDS | 30.0% |
| TCGCTTCTATTTATTTGACT+CGG | + | chr1_1:64583391-64583410 | None:intergenic | 30.0% | |
| ! | GAAAATCCAAATGTTTTGCA+AGG | - | chr1_1:64583409-64583428 | Msa0036160:CDS | 30.0% |
| AACTTACCTTGCAAAACATT+TGG | + | chr1_1:64583418-64583437 | None:intergenic | 30.0% | |
| TATATTTGTGTTGCATAAGG+TGG | + | chr1_1:64583597-64583616 | None:intergenic | 30.0% | |
| CTGTATATTTGTGTTGCATA+AGG | + | chr1_1:64583600-64583619 | None:intergenic | 30.0% | |
| ! | TACAAGGTCACAATTTTGTA+GGG | + | chr1_1:64583692-64583711 | None:intergenic | 30.0% |
| ! | TTACAAGGTCACAATTTTGT+AGG | + | chr1_1:64583693-64583712 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr1_1:64584151-64584170 | None:intergenic | 30.0% | |
| ! | CAAGTTTAGAACACTATGAA+AGG | - | chr1_1:64583848-64583867 | Msa0036160:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr1_1:64583983-64584002 | Msa0036160:intron | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr1_1:64584106-64584125 | Msa0036160:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr1_1:64584107-64584126 | Msa0036160:intron | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr1_1:64584151-64584170 | Msa0036160:intron | 30.0% | |
| ! | CTAATAATCTAGAGTTTGAC+GGG | - | chr1_1:64584291-64584310 | Msa0036160:intron | 30.0% |
| ATCCAATCCCAAAAAATCTT+CGG | + | chr1_1:64584334-64584353 | None:intergenic | 30.0% | |
| TTAATGATAAAGAGTGATGG+TGG | - | chr1_1:64584379-64584398 | Msa0036160:intron | 30.0% | |
| TAATGATAAAGAGTGATGGT+GGG | - | chr1_1:64584380-64584399 | Msa0036160:intron | 30.0% | |
| ! | TCATTACATGAAGCATTAGA+GGG | + | chr1_1:64584528-64584547 | None:intergenic | 30.0% |
| ! | ATCATTACATGAAGCATTAG+AGG | + | chr1_1:64584529-64584548 | None:intergenic | 30.0% |
| CTACTGTAAATGAATAGATC+AGG | + | chr1_1:64584791-64584810 | None:intergenic | 30.0% | |
| ATCGATATTTAGAGAGAGAG+AGG | + | chr1_1:64580223-64580242 | None:intergenic | 35.0% | |
| GAGTTGAATTCAACAGAACT+CGG | + | chr1_1:64580353-64580372 | None:intergenic | 35.0% | |
| GTCTCACTGTGAATTCAATT+CGG | - | chr1_1:64580395-64580414 | Msa0036160:CDS | 35.0% | |
| TCTCACTGTGAATTCAATTC+GGG | - | chr1_1:64580396-64580415 | Msa0036160:CDS | 35.0% | |
| GGAAAGCTTATAGCAGAAAA+AGG | - | chr1_1:64580623-64580642 | Msa0036160:intron | 35.0% | |
| !! | TTTTCAGGATTCAACGACAA+AGG | - | chr1_1:64580677-64580696 | Msa0036160:intron | 35.0% |
| ACAATAACCGCAATCTTACA+TGG | + | chr1_1:64580712-64580731 | None:intergenic | 35.0% | |
| TATTGTGAAACCTTGTTCTG+AGG | - | chr1_1:64580726-64580745 | Msa0036160:intron | 35.0% | |
| !! | AAACCTTGTTCTGAGGATAT+TGG | - | chr1_1:64580733-64580752 | Msa0036160:intron | 35.0% |
| AAACCAATATCCTCAGAACA+AGG | + | chr1_1:64580739-64580758 | None:intergenic | 35.0% | |
| TGTTCTGTTTATGCATCAAG+AGG | - | chr1_1:64580853-64580872 | Msa0036160:intron | 35.0% | |
| GTTCTGTTTATGCATCAAGA+GGG | - | chr1_1:64580854-64580873 | Msa0036160:intron | 35.0% | |
| AATCTATTTAATTCCCCTCG+AGG | - | chr1_1:64581052-64581071 | Msa0036160:intron | 35.0% | |
| AATTCATTACAAACCTCGAG+GGG | + | chr1_1:64581068-64581087 | None:intergenic | 35.0% | |
| CAATTCATTACAAACCTCGA+GGG | + | chr1_1:64581069-64581088 | None:intergenic | 35.0% | |
| ACAATTCATTACAAACCTCG+AGG | + | chr1_1:64581070-64581089 | None:intergenic | 35.0% | |
| GCAGGGATAAGATTTGAAAA+AGG | - | chr1_1:64581336-64581355 | Msa0036160:intron | 35.0% | |
| AAGAGCAAGAGTAAATCAAG+TGG | + | chr1_1:64581490-64581509 | None:intergenic | 35.0% | |
| !!! | TTGGGATTTGCCAGTTTTTT+GGG | - | chr1_1:64581725-64581744 | Msa0036160:intron | 35.0% |
| CTCAGAAGTTTCTTTCATGA+AGG | + | chr1_1:64581950-64581969 | None:intergenic | 35.0% | |
| CCGTCTATTTCAATAACTTC+AGG | + | chr1_1:64581994-64582013 | None:intergenic | 35.0% | |
| TCAAAGTTAGCTGTTCGAAA+TGG | - | chr1_1:64582045-64582064 | Msa0036160:intron | 35.0% | |
| !! | TTACCTTTTGATTCAAAGGG+TGG | - | chr1_1:64582171-64582190 | Msa0036160:intron | 35.0% |
| CACAAGTTTAAACCTTTCAG+AGG | - | chr1_1:64582257-64582276 | Msa0036160:intron | 35.0% | |
| ! | TATTGATTGTTGAGTCTGAC+AGG | - | chr1_1:64582340-64582359 | Msa0036160:CDS | 35.0% |
| CATCTTGCAGTAAAGAAAGA+TGG | - | chr1_1:64582423-64582442 | Msa0036160:CDS | 35.0% | |
| CATTATCTTATCAGCCTTGA+GGG | + | chr1_1:64582463-64582482 | None:intergenic | 35.0% | |
| TCATTATCTTATCAGCCTTG+AGG | + | chr1_1:64582464-64582483 | None:intergenic | 35.0% | |
| TTTAACATGGGTGTACCTAT+TGG | + | chr1_1:64582499-64582518 | None:intergenic | 35.0% | |
| TGATCTCATTAATCAATGGG+TGG | - | chr1_1:64582520-64582539 | Msa0036160:CDS | 35.0% | |
| !! | AGTTTGCTAATCGTCAGAAT+TGG | - | chr1_1:64582550-64582569 | Msa0036160:CDS | 35.0% |
| ATATATTTCGCAGCAGGAAT+TGG | + | chr1_1:64582621-64582640 | None:intergenic | 35.0% | |
| GTAAAACTCATCACTGTTTG+TGG | + | chr1_1:64582724-64582743 | None:intergenic | 35.0% | |
| CAGAGCAATGACATGTAAAA+CGG | - | chr1_1:64582743-64582762 | Msa0036160:CDS | 35.0% | |
| GCAATTTATGACATGGATTC+AGG | - | chr1_1:64582765-64582784 | Msa0036160:CDS | 35.0% | |
| GTTTCAAGAACATGTTTCAG+AGG | - | chr1_1:64582821-64582840 | Msa0036160:CDS | 35.0% | |
| ! | TTTTCATCACAACAGTCATC+TGG | + | chr1_1:64582897-64582916 | None:intergenic | 35.0% |
| TAGAAGCTGTACATGGTTAT+TGG | - | chr1_1:64582961-64582980 | Msa0036160:CDS | 35.0% | |
| ATGGTTATTGGATGAGAAAG+CGG | - | chr1_1:64582973-64582992 | Msa0036160:CDS | 35.0% | |
| ATAATCATTCATCGCTGCTT+AGG | - | chr1_1:64583000-64583019 | Msa0036160:CDS | 35.0% | |
| ! | TTATCTGACCGTCATAGTTT+TGG | - | chr1_1:64583277-64583296 | Msa0036160:CDS | 35.0% |
| CGCTTCTATTTATTTGACTC+GGG | + | chr1_1:64583390-64583409 | None:intergenic | 35.0% | |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr1_1:64584166-64584185 | Msa0036160:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr1_1:64584167-64584186 | Msa0036160:intron | 35.0% |
| AAAATCTTCGGGCATACTTT+AGG | + | chr1_1:64584322-64584341 | None:intergenic | 35.0% | |
| !!! | AAGTATGCCCGAAGATTTTT+TGG | - | chr1_1:64584323-64584342 | Msa0036160:intron | 35.0% |
| !!! | AGTATGCCCGAAGATTTTTT+GGG | - | chr1_1:64584324-64584343 | Msa0036160:intron | 35.0% |
| TCCAATCCCAAAAAATCTTC+GGG | + | chr1_1:64584333-64584352 | None:intergenic | 35.0% | |
| ! | TCTTTTCTGCAATGAAAACC+GGG | + | chr1_1:64585064-64585083 | None:intergenic | 35.0% |
| ! | CTCTTTTCTGCAATGAAAAC+CGG | + | chr1_1:64585065-64585084 | None:intergenic | 35.0% |
| ATTTAGAGAGAGAGAGGAAG+CGG | + | chr1_1:64580217-64580236 | None:intergenic | 40.0% | |
| GAATTCAACAGAACTCGGAT+CGG | + | chr1_1:64580348-64580367 | None:intergenic | 40.0% | |
| TGTGAATTCAATTCGGGAAG+AGG | - | chr1_1:64580402-64580421 | Msa0036160:CDS | 40.0% | |
| AAGACAAACCTGCATAACGA+TGG | - | chr1_1:64580583-64580602 | Msa0036160:intron | 40.0% | |
| ! | GATGGCAGTGATAGGTTTTA+CGG | - | chr1_1:64580601-64580620 | Msa0036160:intron | 40.0% |
| ! | ATGGCAGTGATAGGTTTTAC+GGG | - | chr1_1:64580602-64580621 | Msa0036160:intron | 40.0% |
| GATTCAACGACAAAGGATGA+AGG | - | chr1_1:64580684-64580703 | Msa0036160:intron | 40.0% | |
| GAAGGATCCATGTAAGATTG+CGG | - | chr1_1:64580702-64580721 | Msa0036160:intron | 40.0% | |
| TTGAGAACCGTTGTGATGTT+TGG | - | chr1_1:64580784-64580803 | Msa0036160:intron | 40.0% | |
| TGTGAGTCCAAACATCACAA+CGG | + | chr1_1:64580794-64580813 | None:intergenic | 40.0% | |
| AAGAGGGATACGATTCTTAC+AGG | - | chr1_1:64580870-64580889 | Msa0036160:intron | 40.0% | |
| GTAAATTGATGGAAACTGCG+TGG | - | chr1_1:64581088-64581107 | Msa0036160:intron | 40.0% | |
| GTTGTTATCTACTAAGGGGT+TGG | - | chr1_1:64581460-64581479 | Msa0036160:intron | 40.0% | |
| AGCAAGAGTAAATCAAGTGG+TGG | + | chr1_1:64581487-64581506 | None:intergenic | 40.0% | |
| !!! | GTTGGGATTTGCCAGTTTTT+TGG | - | chr1_1:64581724-64581743 | Msa0036160:intron | 40.0% |
| !!! | TGGGATTTGCCAGTTTTTTG+GGG | - | chr1_1:64581726-64581745 | Msa0036160:intron | 40.0% |
| TGTAGAGACGTGAAACATTG+AGG | + | chr1_1:64581796-64581815 | None:intergenic | 40.0% | |
| GAGAACTTCACCTAGGATAA+AGG | - | chr1_1:64582107-64582126 | Msa0036160:intron | 40.0% | |
| TTCTGAGCTTCCTTTATCCT+AGG | + | chr1_1:64582120-64582139 | None:intergenic | 40.0% | |
| !! | CTTTTGATTCAAAGGGTGGA+CGG | - | chr1_1:64582175-64582194 | Msa0036160:intron | 40.0% |
| !! | TTTTGATTCAAAGGGTGGAC+GGG | - | chr1_1:64582176-64582195 | Msa0036160:intron | 40.0% |
| ACGTCTGGGTTTCTTATTAG+AGG | + | chr1_1:64582223-64582242 | None:intergenic | 40.0% | |
| CAACTGTTAGTCAAACGTCT+GGG | + | chr1_1:64582237-64582256 | None:intergenic | 40.0% | |
| ! | TTGAGTCTGACAGGTGTTAT+AGG | - | chr1_1:64582349-64582368 | Msa0036160:CDS | 40.0% |
| ! | TGAGTCTGACAGGTGTTATA+GGG | - | chr1_1:64582350-64582369 | Msa0036160:CDS | 40.0% |
| ACTGGAATATATTTCGCAGC+AGG | + | chr1_1:64582627-64582646 | None:intergenic | 40.0% | |
| GCGAAATATATTCCAGTACC+AGG | - | chr1_1:64582630-64582649 | Msa0036160:CDS | 40.0% | |
| TAAGAATCCGGTCGATTGAA+GGG | + | chr1_1:64582696-64582715 | None:intergenic | 40.0% | |
| ATAAGAATCCGGTCGATTGA+AGG | + | chr1_1:64582697-64582716 | None:intergenic | 40.0% | |
| TGGATTCAGGTGATGAAGAT+TGG | - | chr1_1:64582778-64582797 | Msa0036160:CDS | 40.0% | |
| GGATTCAGGTGATGAAGATT+GGG | - | chr1_1:64582779-64582798 | Msa0036160:CDS | 40.0% | |
| AAAGCAAGCAGTGCAACAAT+GGG | + | chr1_1:64583043-64583062 | None:intergenic | 40.0% | |
| TAAAGCAAGCAGTGCAACAA+TGG | + | chr1_1:64583044-64583063 | None:intergenic | 40.0% | |
| CTGTTAAGGCGATGTATATC+TGG | - | chr1_1:64583197-64583216 | Msa0036160:CDS | 40.0% | |
| ! | TAGTCTCTTGAACTCTGGAA+GGG | - | chr1_1:64583220-64583239 | Msa0036160:CDS | 40.0% |
| AGTGAAGGCTTGAGAACAAA+TGG | + | chr1_1:64583340-64583359 | None:intergenic | 40.0% | |
| ! | TTTAACCCTCCCGTTTTCAA+AGG | - | chr1_1:64584259-64584278 | Msa0036160:intron | 40.0% |
| ! | TGTCTGCTTCCTTTGAAAAC+GGG | + | chr1_1:64584271-64584290 | None:intergenic | 40.0% |
| ! | GTGTCTGCTTCCTTTGAAAA+CGG | + | chr1_1:64584272-64584291 | None:intergenic | 40.0% |
| !! | GTTTTCAAACTCCTTTGGAG+AGG | + | chr1_1:64584357-64584376 | None:intergenic | 40.0% |
| TCACAACTCAGATTGTTCCT+TGG | - | chr1_1:64584484-64584503 | Msa0036160:CDS | 40.0% | |
| TTCATTTACAGTAGCTGCTG+AGG | - | chr1_1:64584797-64584816 | Msa0036160:CDS | 40.0% | |
| AGCAGCTGCAAATGAATCAA+CGG | - | chr1_1:64584833-64584852 | Msa0036160:CDS | 40.0% | |
| TGCAGATTTAGCAGTCTACA+AGG | - | chr1_1:64584902-64584921 | Msa0036160:CDS | 40.0% | |
| AGGACAGTTTCTTGATTGAC+TGG | - | chr1_1:64584986-64585005 | Msa0036160:five_prime_UTR | 40.0% | |
| CAGTTTCTTGATTGACTGGT+AGG | - | chr1_1:64584990-64585009 | Msa0036160:five_prime_UTR | 40.0% | |
| ! | CGGTTTTCATTGCAGAAAAG+AGG | - | chr1_1:64585063-64585082 | Msa0036160:five_prime_UTR | 40.0% |
| TTTAGAGAGAGAGAGGAAGC+GGG | + | chr1_1:64580216-64580235 | None:intergenic | 45.0% | |
| GGTTGAAATGCCATCACCAT+CGG | - | chr1_1:64580423-64580442 | Msa0036160:CDS | 45.0% | |
| CGGTTTCTTCCTTCGATCAT+CGG | + | chr1_1:64580560-64580579 | None:intergenic | 45.0% | |
| CGATGATCGAAGGAAGAAAC+CGG | - | chr1_1:64580558-64580577 | Msa0036160:intron | 45.0% | |
| TTATGCAGGTTTGTCTTCGC+CGG | + | chr1_1:64580580-64580599 | None:intergenic | 45.0% | |
| TATCACTGCCATCGTTATGC+AGG | + | chr1_1:64580594-64580613 | None:intergenic | 45.0% | |
| TGCATAACGATGGCAGTGAT+AGG | - | chr1_1:64580593-64580612 | Msa0036160:intron | 45.0% | |
| GATGTTTGGACTCACATTCG+AGG | - | chr1_1:64580798-64580817 | Msa0036160:intron | 45.0% | |
| GTTCTGTTACTGCCAACGTT+GGG | - | chr1_1:64581707-64581726 | Msa0036160:intron | 45.0% | |
| AAACTGGCAAATCCCAACGT+TGG | + | chr1_1:64581722-64581741 | None:intergenic | 45.0% | |
| ACCTTGTCACCCCAAAAAAC+TGG | + | chr1_1:64581738-64581757 | None:intergenic | 45.0% | |
| AGATGAGGAGAACTTCACCT+AGG | - | chr1_1:64582100-64582119 | Msa0036160:intron | 45.0% | |
| CGTCCACCCTTTGAATCAAA+AGG | + | chr1_1:64582177-64582196 | None:intergenic | 45.0% | |
| GCAACTGTTAGTCAAACGTC+TGG | + | chr1_1:64582238-64582257 | None:intergenic | 45.0% | |
| TGACAGACTTTGCCTCTGAA+AGG | + | chr1_1:64582272-64582291 | None:intergenic | 45.0% | |
| TTCAGAGGCAAAGTCTGTCA+TGG | - | chr1_1:64582272-64582291 | Msa0036160:intron | 45.0% | |
| ! | GACAGGTGTTATAGGGTAGA+AGG | - | chr1_1:64582357-64582376 | Msa0036160:CDS | 45.0% |
| AGATGCCATTCTCCTGACTT+GGG | + | chr1_1:64582408-64582427 | None:intergenic | 45.0% | |
| AAGATGCCATTCTCCTGACT+TGG | + | chr1_1:64582409-64582428 | None:intergenic | 45.0% | |
| TGAGACCATGCTCTTCCAAT+AGG | - | chr1_1:64582481-64582500 | Msa0036160:CDS | 45.0% | |
| GTGTACCTATTGGAAGAGCA+TGG | + | chr1_1:64582489-64582508 | None:intergenic | 45.0% | |
| AAGGCTGTAGAAGCTGTACA+TGG | - | chr1_1:64582954-64582973 | Msa0036160:CDS | 45.0% | |
| ! | ATCGCTGCTTAGGATTTTCC+AGG | - | chr1_1:64583010-64583029 | Msa0036160:CDS | 45.0% |
| GCAACAATGGGAAAGTTACC+TGG | + | chr1_1:64583031-64583050 | None:intergenic | 45.0% | |
| TCTGGTAGTCTCTTGAACTC+TGG | - | chr1_1:64583215-64583234 | Msa0036160:CDS | 45.0% | |
| GTAGTCTCTTGAACTCTGGA+AGG | - | chr1_1:64583219-64583238 | Msa0036160:CDS | 45.0% | |
| ! | TGCTTCCTTTGAAAACGGGA+GGG | + | chr1_1:64584267-64584286 | None:intergenic | 45.0% |
| !!! | GCCCGAAGATTTTTTGGGAT+TGG | - | chr1_1:64584329-64584348 | Msa0036160:intron | 45.0% |
| ATGACTGAAGCAACTCAAGC+TGG | - | chr1_1:64584942-64584961 | Msa0036160:five_prime_UTR | 45.0% | |
| TGGAGGATCTGTAGATGCAT+TGG | - | chr1_1:64584962-64584981 | Msa0036160:five_prime_UTR | 45.0% | |
| !! | TAAATAAATAAATAAATGTA+GGG | + | chr1_1:64581237-64581256 | None:intergenic | 5.0% |
| !! | ATAAATAAATAAATAAATGT+AGG | + | chr1_1:64581238-64581257 | None:intergenic | 5.0% |
| !! | TTATTGTAATTTATTATTTA+TGG | - | chr1_1:64581258-64581277 | Msa0036160:intron | 5.0% |
| !! | AAACAATAAAATAAAATTAA+CGG | + | chr1_1:64583504-64583523 | None:intergenic | 5.0% |
| !!! | TAATTTTATTTTATTGTTTT+TGG | - | chr1_1:64583505-64583524 | Msa0036160:CDS | 5.0% |
| GAGGGAACAGAGAGAAAGAG+AGG | + | chr1_1:64580185-64580204 | None:intergenic | 50.0% | |
| AGGAAGCGGGAAAGAGAAGA+GGG | + | chr1_1:64580203-64580222 | None:intergenic | 50.0% | |
| AGGCAAACCACAACGGTGTT+TGG | - | chr1_1:64580454-64580473 | Msa0036160:CDS | 50.0% | |
| ! | ACGGTGTTTGGAGTCGTCAA+AGG | - | chr1_1:64580466-64580485 | Msa0036160:CDS | 50.0% |
| ! | GTGTTTGGAGTCGTCAAAGG+CGG | - | chr1_1:64580469-64580488 | Msa0036160:CDS | 50.0% |
| TCGATCATCGGAGATGTTGC+CGG | + | chr1_1:64580548-64580567 | None:intergenic | 50.0% | |
| GCAACATCTCCGATGATCGA+AGG | - | chr1_1:64580548-64580567 | Msa0036160:intron | 50.0% | |
| TCCTGTAAATGGGTGGATGC+AGG | - | chr1_1:64581318-64581337 | Msa0036160:intron | 50.0% | |
| CCTGTAAATGGGTGGATGCA+GGG | - | chr1_1:64581319-64581338 | Msa0036160:intron | 50.0% | |
| GGTTCTGTTACTGCCAACGT+TGG | - | chr1_1:64581706-64581725 | Msa0036160:intron | 50.0% | |
| !!! | GCCAGTTTTTTGGGGTGACA+AGG | - | chr1_1:64581734-64581753 | Msa0036160:intron | 50.0% |
| CACGTCTCTACATTCTGCAG+TGG | - | chr1_1:64581804-64581823 | Msa0036160:intron | 50.0% | |
| !! | GGAAAAAAGTAGCGCTGGTG+TGG | - | chr1_1:64582197-64582216 | Msa0036160:intron | 50.0% |
| TCAGAAGAAACGCCCAAGTC+AGG | - | chr1_1:64582393-64582412 | Msa0036160:CDS | 50.0% | |
| AAACGCCCAAGTCAGGAGAA+TGG | - | chr1_1:64582400-64582419 | Msa0036160:CDS | 50.0% | |
| ! | GTTGACTCAATGCACCCTCA+AGG | - | chr1_1:64582446-64582465 | Msa0036160:CDS | 50.0% |
| ACTTCACATACGCCTGGTAC+TGG | + | chr1_1:64582645-64582664 | None:intergenic | 50.0% | |
| TCAGAGACTTCACATACGCC+TGG | + | chr1_1:64582651-64582670 | None:intergenic | 50.0% | |
| TACCGTTCCCTTCAATCGAC+CGG | - | chr1_1:64582686-64582705 | Msa0036160:CDS | 50.0% | |
| ATCCGGTCGATTGAAGGGAA+CGG | + | chr1_1:64582691-64582710 | None:intergenic | 50.0% | |
| CCAAAGGAGAGAATTGCACG+AGG | + | chr1_1:64583097-64583116 | None:intergenic | 50.0% | |
| CCTCGTGCAATTCTCTCCTT+TGG | - | chr1_1:64583094-64583113 | Msa0036160:CDS | 50.0% | |
| ! | TTGAACTCTGGAAGGGCTCT+AGG | - | chr1_1:64583227-64583246 | Msa0036160:CDS | 50.0% |
| AGCCTTCACTGCGAAAGAAG+AGG | - | chr1_1:64583350-64583369 | Msa0036160:CDS | 50.0% | |
| GACCTCTTCTTTCGCAGTGA+AGG | + | chr1_1:64583355-64583374 | None:intergenic | 50.0% | |
| ! | CTGCTTCCTTTGAAAACGGG+AGG | + | chr1_1:64584268-64584287 | None:intergenic | 50.0% |
| TGGGATTGGATCCTCTCCAA+AGG | - | chr1_1:64584343-64584362 | Msa0036160:intron | 50.0% | |
| GTGTCTATAGATGGACGTCG+TGG | - | chr1_1:64584758-64584777 | Msa0036160:CDS | 50.0% | |
| ACTGAAGCAACTCAAGCTGG+AGG | - | chr1_1:64584945-64584964 | Msa0036160:five_prime_UTR | 50.0% | |
| ! | GGATCTGTAGATGCATTGGC+AGG | - | chr1_1:64584966-64584985 | Msa0036160:five_prime_UTR | 50.0% |
| GAGGAAGCGGGAAAGAGAAG+AGG | + | chr1_1:64580204-64580223 | None:intergenic | 55.0% | |
| TGCCACGAGGCAAACCACAA+CGG | - | chr1_1:64580447-64580466 | Msa0036160:CDS | 55.0% | |
| GACGACTCCAAACACCGTTG+TGG | + | chr1_1:64580464-64580483 | None:intergenic | 55.0% | |
| ! | TTTGGAGTCGTCAAAGGCGG+TGG | - | chr1_1:64580472-64580491 | Msa0036160:CDS | 55.0% |
| ACCGGACGTGTGTTACGTTC+AGG | - | chr1_1:64580502-64580521 | Msa0036160:CDS | 55.0% | |
| CCCTGAACGTAACACACGTC+CGG | + | chr1_1:64580506-64580525 | None:intergenic | 55.0% | |
| CCGGACGTGTGTTACGTTCA+GGG | - | chr1_1:64580503-64580522 | Msa0036160:CDS | 55.0% | |
| GACGTGTGTTACGTTCAGGG+CGG | - | chr1_1:64580506-64580525 | Msa0036160:CDS | 55.0% | |
| TACGTTCAGGGCGGCAGTTA+TGG | - | chr1_1:64580515-64580534 | Msa0036160:CDS | 55.0% | |
| TCGGAGATGTTGCCGGAATC+CGG | + | chr1_1:64580541-64580560 | None:intergenic | 55.0% | |
| CCCTGCATCCACCCATTTAC+AGG | + | chr1_1:64581322-64581341 | None:intergenic | 55.0% | |
| ACGCTCGACGCATTCAGATG+AGG | - | chr1_1:64582085-64582104 | Msa0036160:intron | 55.0% | |
| GGACGGGAAAAAAGTAGCGC+TGG | - | chr1_1:64582192-64582211 | Msa0036160:intron | 55.0% | |
| CTCGTGGCAACCGATGGTGA+TGG | + | chr1_1:64580436-64580455 | None:intergenic | 60.0% | |
| ! | CATCACCATCGGTTGCCACG+AGG | - | chr1_1:64580434-64580453 | Msa0036160:CDS | 60.0% |
| GTTTGCCTCGTGGCAACCGA+TGG | + | chr1_1:64580442-64580461 | None:intergenic | 60.0% | |
| ! | CACCGTTGTGGTTTGCCTCG+TGG | + | chr1_1:64580452-64580471 | None:intergenic | 60.0% |
| TTCAGGGCGGCAGTTATGGC+CGG | - | chr1_1:64580519-64580538 | Msa0036160:CDS | 60.0% | |
| CGGCAGTTATGGCCGGATTC+CGG | - | chr1_1:64580526-64580545 | Msa0036160:CDS | 60.0% | |
| GGAGTCGTCAAAGGCGGTGG+CGG | - | chr1_1:64580475-64580494 | Msa0036160:CDS | 65.0% | |
| !! | AAAGGCGGTGGCGGAGACAC+CGG | - | chr1_1:64580484-64580503 | Msa0036160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64580182 | 64585178 | 64580182 | ID=Msa0036160;Name=Msa0036160 |
| chr1_1 | mRNA | 64580182 | 64585178 | 64580182 | ID=Msa0036160-mRNA-1;Parent=Msa0036160;Name=Msa0036160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=248|1|1|1|1|1|4|174|699 |
| chr1_1 | exon | 64580182 | 64580552 | 64580182 | ID=Msa0036160-mRNA-1:exon:20687;Parent=Msa0036160-mRNA-1 |
| chr1_1 | exon | 64581930 | 64582044 | 64581930 | ID=Msa0036160-mRNA-1:exon:20686;Parent=Msa0036160-mRNA-1 |
| chr1_1 | exon | 64582329 | 64583654 | 64582329 | ID=Msa0036160-mRNA-1:exon:20685;Parent=Msa0036160-mRNA-1 |
| chr1_1 | exon | 64584469 | 64585178 | 64584469 | ID=Msa0036160-mRNA-1:exon:20684;Parent=Msa0036160-mRNA-1 |
| chr1_1 | five_prime_UTR | 64584931 | 64585178 | 64584931 | ID=Msa0036160-mRNA-1:five_prime_utr;Parent=Msa0036160-mRNA-1 |
| chr1_1 | CDS | 64584469 | 64584930 | 64584469 | ID=Msa0036160-mRNA-1:cds;Parent=Msa0036160-mRNA-1 |
| chr1_1 | CDS | 64582329 | 64583654 | 64582329 | ID=Msa0036160-mRNA-1:cds;Parent=Msa0036160-mRNA-1 |
| chr1_1 | CDS | 64581930 | 64582044 | 64581930 | ID=Msa0036160-mRNA-1:cds;Parent=Msa0036160-mRNA-1 |
| chr1_1 | CDS | 64580356 | 64580552 | 64580356 | ID=Msa0036160-mRNA-1:cds;Parent=Msa0036160-mRNA-1 |
| chr1_1 | three_prime_UTR | 64580182 | 64580355 | 64580182 | ID=Msa0036160-mRNA-1:three_prime_utr;Parent=Msa0036160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
