AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0085590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085590 MtrunA17_Chr1g0201151 97.053 543 9 1 1 536 104 646 0.0 1082
Msa0085590 MtrunA17_Chr1g0201151 34.589 292 172 7 14 303 29 303 6.12e-42 159
Msa0085590 MtrunA17_Chr6g0465631 66.667 522 164 4 1 522 1 512 0.0 692
Msa0085590 MtrunA17_Chr6g0466451 66.475 522 165 4 1 522 1 512 0.0 690
Msa0085590 MtrunA17_Chr6g0465751 64.486 535 171 6 1 529 99 620 0.0 664
Msa0085590 MtrunA17_Chr6g0465751 35.417 288 163 7 16 301 26 292 2.10e-45 169
Msa0085590 MtrunA17_Chr6g0466501 63.687 537 172 6 1 531 99 618 0.0 655
Msa0085590 MtrunA17_Chr6g0466501 35.172 290 165 7 14 301 24 292 2.06e-45 169
Msa0085590 MtrunA17_Chr6g0465691 63.687 537 172 6 1 531 17 536 0.0 654
Msa0085590 MtrunA17_Chr0c09g0493511 63.128 537 179 6 1 531 17 540 0.0 645
Msa0085590 MtrunA17_Chr4g0044541 58.131 535 199 13 1 520 108 632 0.0 577
Msa0085590 MtrunA17_Chr4g0044541 34.375 288 169 6 16 301 35 304 1.70e-45 169
Msa0085590 MtrunA17_Chr4g0044541 34.392 189 106 3 106 293 34 205 4.61e-26 112
Msa0085590 MtrunA17_Chr1g0153181 54.745 548 229 11 1 536 106 646 0.0 547
Msa0085590 MtrunA17_Chr1g0153181 36.207 290 165 6 14 301 31 302 1.34e-48 178
Msa0085590 MtrunA17_Chr3g0134141 56.514 545 204 12 1 536 98 618 0.0 531
Msa0085590 MtrunA17_Chr3g0134141 34.483 290 170 6 14 301 23 294 2.33e-42 160
Msa0085590 MtrunA17_Chr7g0265341 42.243 535 276 10 1 516 144 664 2.16e-120 369
Msa0085590 MtrunA17_Chr7g0265341 36.207 290 167 4 15 303 70 342 8.41e-47 173
Msa0085590 MtrunA17_Chr1g0179701 41.645 377 201 7 1 371 136 499 6.29e-87 279
Msa0085590 MtrunA17_Chr1g0179701 33.887 301 178 7 3 301 51 332 7.07e-43 160
Msa0085590 MtrunA17_Chr1g0179701 33.824 204 115 5 101 302 58 243 2.40e-21 97.8
Msa0085590 MtrunA17_Chr6g0465741 76.271 59 14 0 462 520 40 98 8.83e-24 96.3
Msa0085590 MtrunA17_Chr1g0153871 24.113 282 204 6 16 293 98 373 3.95e-23 102
Msa0085590 MtrunA17_Chr6g0466551 61.250 80 31 0 457 536 34 113 4.59e-23 95.1
Msa0085590 MtrunA17_Chr6g0466541 38.650 163 64 5 140 302 2 128 3.80e-22 92.0
Msa0085590 MtrunA17_Chr6g0466541 37.584 149 69 4 48 196 1 125 6.59e-21 88.6
Msa0085590 MtrunA17_Chr3g0133651 25.000 308 212 11 17 318 95 389 1.84e-20 94.0
Msa0085590 MtrunA17_Chr3g0133651 32.044 181 103 8 16 181 188 363 1.92e-15 78.6
Msa0085590 MtrunA17_Chr4g0045221 26.370 292 179 11 16 280 117 399 1.52e-18 88.2
Msa0085590 MtrunA17_Chr4g0045221 28.643 199 122 7 95 289 113 295 4.28e-13 71.6
Msa0085590 MtrunA17_Chr8g0344491 27.273 308 170 10 6 279 57 344 7.12e-18 86.3
Msa0085590 MtrunA17_Chr3g0139111 24.658 292 193 5 7 280 52 334 1.36e-17 85.5
Msa0085590 MtrunA17_Chr4g0074711 23.509 285 204 9 17 294 76 353 1.44e-17 85.1
Msa0085590 MtrunA17_Chr4g0070231 24.832 298 184 7 7 280 38 319 6.66e-17 82.8
Msa0085590 MtrunA17_Chr3g0110211 29.570 186 110 5 109 291 28 195 9.77e-17 82.0
Msa0085590 MtrunA17_Chr3g0110211 28.495 186 123 5 8 188 18 198 6.97e-16 79.7
Msa0085590 MtrunA17_Chr3g0110211 36.667 90 55 2 16 103 113 202 3.03e-13 71.6
Msa0085590 MtrunA17_Chr2g0288251 23.077 286 205 9 17 294 62 340 1.06e-16 82.4
Msa0085590 MtrunA17_Chr3g0116631 31.771 192 119 5 103 291 106 288 1.44e-15 77.4
Msa0085590 MtrunA17_Chr3g0116631 28.177 181 122 5 15 188 109 288 7.92e-11 63.2
Msa0085590 MtrunA17_Chr5g0411091 34.595 185 108 7 107 288 97 271 1.97e-13 71.6
Msa0085590 MtrunA17_Chr3g0101061 25.098 255 133 11 108 320 42 280 7.64e-13 70.9
Msa0085590 MtrunA17_Chr3g0101061 28.324 173 106 6 15 171 40 210 9.83e-11 64.3
Msa0085590 MtrunA17_Chr1g0181111 29.208 202 114 5 17 196 86 280 8.12e-13 68.9
Msa0085590 MtrunA17_Chr4g0058151 30.645 186 116 5 108 291 124 298 1.00e-12 68.9
Msa0085590 MtrunA17_Chr7g0267571 29.885 174 103 7 14 171 108 278 1.16e-12 68.9
Msa0085590 MtrunA17_Chr7g0259641 32.124 193 112 10 16 195 586 772 2.39e-12 69.7
Msa0085590 MtrunA17_Chr7g0259641 29.362 235 143 10 78 299 553 777 3.21e-12 69.3
Msa0085590 MtrunA17_Chr7g0268551 27.011 348 203 15 106 446 16 319 2.43e-12 68.9
Msa0085590 MtrunA17_Chr4g0031091 37.805 82 50 1 9 89 27 108 3.53e-12 63.2
Msa0085590 MtrunA17_Chr1g0177101 28.649 185 114 5 108 285 110 283 7.73e-12 66.6
Msa0085590 MtrunA17_Chr1g0177101 28.235 170 107 6 14 171 107 273 2.77e-11 64.7
Msa0085590 MtrunA17_Chr2g0290191 25.287 174 121 4 108 275 6 176 1.32e-11 67.0
Msa0085590 MtrunA17_Chr4g0068631 25.128 195 124 6 105 293 87 265 2.90e-11 66.2
Msa0085590 MtrunA17_Chr3g0087481 31.217 189 119 6 90 275 45 225 3.01e-11 63.5
Msa0085590 MtrunA17_Chr8g0360551 27.801 241 151 7 45 278 10 234 3.74e-11 65.5
Msa0085590 MtrunA17_Chr4g0026301 22.941 340 213 11 17 338 112 420 3.98e-11 65.5
Msa0085590 MtrunA17_Chr8g0335981 23.273 275 178 8 10 276 210 459 4.81e-11 65.5
Msa0085590 MtrunA17_Chr3g0119311 37.838 74 45 1 17 89 38 111 8.45e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0085590 AT1G71770.1 56.831 549 215 12 1 530 132 677 0.0 598
Msa0085590 AT1G71770.1 33.681 288 176 5 16 303 60 332 8.73e-44 165
Msa0085590 AT1G71770.2 56.831 549 215 12 1 530 132 677 0.0 598
Msa0085590 AT1G71770.2 33.681 288 176 5 16 303 60 332 8.73e-44 165
Msa0085590 AT1G22760.1 57.944 535 193 12 1 516 122 643 0.0 580
Msa0085590 AT1G22760.1 33.681 288 176 5 16 303 50 322 2.60e-42 160
Msa0085590 AT1G22760.1 31.720 186 110 2 106 291 49 217 3.27e-22 101
Msa0085590 AT4G34110.1 54.917 539 220 12 1 535 110 629 0.0 543
Msa0085590 AT4G34110.1 34.138 290 173 5 13 301 34 306 5.39e-45 168
Msa0085590 AT1G49760.1 54.741 559 220 16 1 536 119 667 0.0 536
Msa0085590 AT1G49760.1 33.219 292 177 5 11 301 41 315 8.50e-47 174
Msa0085590 AT1G49760.2 54.741 559 220 16 1 536 119 667 0.0 536
Msa0085590 AT1G49760.2 33.219 292 177 5 11 301 41 315 8.50e-47 174
Msa0085590 AT2G23350.1 53.028 545 219 15 13 536 132 660 0.0 528
Msa0085590 AT2G23350.1 34.471 293 174 4 16 307 47 322 3.16e-45 169
Msa0085590 AT1G34140.1 49.118 397 167 8 1 370 17 405 7.98e-113 341
Msa0085590 AT2G36660.1 37.356 522 293 9 1 521 98 586 2.74e-99 313
Msa0085590 AT2G36660.1 35.294 289 167 6 14 301 23 292 3.09e-44 166
Msa0085590 AT2G36660.1 28.421 190 118 2 103 291 21 193 7.80e-19 90.5
Msa0085590 AT3G16380.1 42.941 340 183 5 1 337 95 426 3.24e-80 261
Msa0085590 AT3G16380.1 34.589 292 165 7 15 300 21 292 8.67e-41 155
Msa0085590 AT3G16380.1 34.197 193 111 4 102 293 17 194 6.22e-23 102
Msa0085590 AT1G47490.1 26.471 272 183 10 17 278 103 367 5.00e-22 99.4
Msa0085590 AT1G47490.1 34.615 182 97 7 17 181 199 375 7.46e-18 86.7
Msa0085590 AT1G49600.3 27.273 319 188 13 11 302 110 411 6.77e-21 95.9
Msa0085590 AT1G49600.2 27.273 319 188 13 11 302 110 411 6.77e-21 95.9
Msa0085590 AT1G49600.1 27.972 286 170 11 17 280 121 392 2.36e-20 94.4
Msa0085590 AT1G49600.1 30.870 230 125 9 16 221 214 433 1.52e-15 79.3
Msa0085590 AT1G47500.1 26.909 275 182 12 17 280 105 371 3.44e-20 93.6
Msa0085590 AT1G47500.1 34.426 183 98 7 16 181 200 377 1.69e-17 85.5
Msa0085590 AT3G19130.1 27.986 293 178 13 13 280 102 386 9.53e-20 92.4
Msa0085590 AT3G19130.1 32.178 202 103 8 16 188 203 399 1.43e-16 82.4
Msa0085590 AT1G54080.1 27.526 287 174 9 6 273 58 329 2.44e-18 87.8
Msa0085590 AT1G54080.1 28.571 175 105 5 107 280 64 219 1.26e-12 70.5
Msa0085590 AT1G17370.2 27.835 291 177 10 6 278 49 324 3.31e-17 84.3
Msa0085590 AT3G14100.1 27.758 281 169 8 6 267 54 319 4.44e-17 84.0
Msa0085590 AT3G14100.1 27.473 182 112 5 107 287 60 222 2.38e-12 69.3
Msa0085590 AT1G54080.2 27.491 291 173 10 6 273 58 333 5.18e-17 84.0
Msa0085590 AT1G17370.1 27.211 294 178 10 6 278 49 327 6.94e-17 83.6
Msa0085590 AT5G19350.1 22.414 290 200 9 16 286 25 308 2.91e-16 81.6
Msa0085590 AT5G54900.1 23.826 298 193 11 16 296 61 341 5.36e-16 80.5
Msa0085590 AT1G11650.2 23.381 278 199 7 7 276 51 322 1.21e-15 79.3
Msa0085590 AT4G00830.2 24.372 398 246 13 17 391 118 483 3.53e-15 78.6
Msa0085590 AT4G00830.1 24.372 398 246 13 17 391 118 483 3.53e-15 78.6
Msa0085590 AT4G00830.6 24.372 398 246 13 17 391 118 483 3.53e-15 78.6
Msa0085590 AT2G18510.1 27.273 187 115 5 108 291 27 195 4.65e-15 77.4
Msa0085590 AT2G18510.1 25.668 187 129 5 8 189 18 199 1.78e-13 72.4
Msa0085590 AT2G18510.1 36.667 90 55 2 16 103 113 202 7.77e-13 70.5
Msa0085590 AT4G24770.1 32.979 188 111 6 108 292 152 327 7.73e-15 76.3
Msa0085590 AT4G24770.2 32.979 188 111 6 108 292 152 327 7.73e-15 76.3
Msa0085590 AT4G00830.3 24.874 398 236 14 17 391 118 475 1.51e-14 76.6
Msa0085590 AT4G00830.5 24.874 398 236 14 17 391 118 475 1.51e-14 76.6
Msa0085590 AT1G01080.1 29.843 191 118 6 1 177 95 283 2.16e-14 74.3
Msa0085590 AT1G01080.1 28.333 180 122 5 103 278 105 281 8.69e-11 63.5
Msa0085590 AT4G00830.4 24.311 399 245 14 17 391 118 483 4.84e-14 75.1
Msa0085590 AT1G01080.3 30.978 184 111 6 1 170 95 276 5.65e-14 73.2
Msa0085590 AT4G27000.1 23.368 291 197 9 16 294 81 357 5.69e-14 74.3
Msa0085590 AT1G01080.2 29.688 192 118 6 1 177 95 284 7.55e-14 72.8
Msa0085590 AT2G35410.1 27.957 186 119 5 108 287 97 273 1.37e-13 72.0
Msa0085590 AT3G52150.2 31.319 182 95 6 108 275 78 243 2.29e-13 70.5
Msa0085590 AT3G52150.1 31.319 182 95 6 108 275 78 243 2.29e-13 70.5
Msa0085590 AT1G11650.1 22.692 260 187 7 7 258 51 304 3.69e-13 70.9
Msa0085590 AT5G50250.1 30.890 191 119 6 103 291 110 289 6.62e-13 69.7
Msa0085590 AT5G55550.5 26.531 245 139 11 108 338 8 225 7.29e-13 71.2
Msa0085590 AT5G55550.4 26.531 245 139 11 108 338 8 225 7.29e-13 71.2
Msa0085590 AT5G55550.9 26.531 245 139 11 108 338 8 225 7.29e-13 71.2
Msa0085590 AT5G55550.7 26.531 245 139 11 108 338 8 225 7.29e-13 71.2
Msa0085590 AT5G55550.1 26.531 245 139 11 108 338 8 225 7.29e-13 71.2
Msa0085590 AT5G55550.2 26.531 245 139 11 108 338 8 225 9.63e-13 70.9
Msa0085590 AT5G55550.3 26.531 245 139 11 108 338 8 225 9.63e-13 70.9
Msa0085590 AT5G55550.6 26.531 245 139 11 108 338 8 225 9.63e-13 70.9
Msa0085590 AT5G55550.11 26.531 245 139 11 108 338 8 225 9.63e-13 70.9
Msa0085590 AT5G47620.1 28.177 181 105 8 108 275 8 176 1.71e-12 70.1
Msa0085590 AT5G47620.2 28.177 181 105 8 108 275 8 176 1.71e-12 70.1
Msa0085590 AT5G47620.5 28.177 181 105 8 108 275 8 176 1.71e-12 70.1
Msa0085590 AT3G19350.1 48.485 66 33 1 451 516 23 87 1.83e-12 64.3
Msa0085590 AT1G45100.1 23.864 264 175 6 11 267 60 304 3.78e-12 68.9
Msa0085590 AT1G17640.2 26.230 183 119 5 108 288 68 236 3.79e-12 68.6
Msa0085590 AT1G17640.1 26.230 183 119 5 108 288 68 236 3.79e-12 68.6
Msa0085590 AT1G17640.3 26.230 183 119 5 108 288 68 236 3.79e-12 68.6
Msa0085590 AT4G26650.2 25.405 185 112 6 108 275 14 189 6.39e-12 68.2
Msa0085590 AT4G26650.1 25.405 185 112 6 108 275 17 192 7.11e-12 68.2
Msa0085590 AT5G41690.1 26.943 193 126 4 108 286 70 261 7.90e-12 68.2
Msa0085590 AT5G41690.3 26.943 193 126 4 108 286 70 261 7.90e-12 68.2
Msa0085590 AT5G41690.2 26.943 193 126 4 108 286 70 261 7.90e-12 68.2
Msa0085590 AT4G19610.1 30.636 173 109 5 6 169 595 765 9.14e-12 68.6
Msa0085590 AT3G52380.1 28.351 194 110 6 15 189 116 299 1.40e-11 66.2
Msa0085590 AT3G52380.1 28.495 186 127 5 108 290 118 300 7.35e-11 64.3
Msa0085590 AT3G46020.1 34.737 95 61 1 210 303 7 101 1.43e-11 61.6
Msa0085590 AT4G36960.1 29.762 168 105 6 16 176 4 165 1.79e-11 66.6
Msa0085590 AT4G36960.2 29.762 168 105 6 16 176 4 165 1.79e-11 66.6
Msa0085590 AT4G13850.3 41.333 75 43 1 14 87 34 108 2.01e-11 62.4
Msa0085590 AT4G13850.2 41.333 75 43 1 14 87 34 108 2.46e-11 62.4
Msa0085590 AT4G13850.1 41.333 75 43 1 14 87 34 108 2.74e-11 62.4
Msa0085590 AT5G03580.1 39.241 79 47 1 104 182 15 92 5.56e-11 60.1
Msa0085590 AT2G47310.1 24.528 212 148 4 92 299 96 299 7.77e-11 65.1

Find 197 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAAGCTATTATTATTT+TGG 0.118284 1_2:+65768615 Msa0085590:three_prime_UTR
CCGCTGGCTGCAGGGCTTCC+TGG 0.125743 1_2:+65767372 Msa0085590:CDS
CCCTGTCTTTGGAGCTGATA+TGG 0.234302 1_2:-65767546 None:intergenic
CATACCATGCGCTGATTGTC+TGG 0.263859 1_2:-65767892 None:intergenic
CATTTGTCCTAACCCTTTCC+TGG 0.268295 1_2:-65766042 None:intergenic
CCACCTCAGCCTGCTGGATT+TGG 0.272099 1_2:+65767465 Msa0085590:CDS
CGCTCAGGTTGTTTCAATTA+GGG 0.273509 1_2:+65764680 Msa0085590:five_prime_UTR
TCGCTCAGGTTGTTTCAATT+AGG 0.283695 1_2:+65764679 Msa0085590:five_prime_UTR
CGCTGGCTGCAGGGCTTCCT+GGG 0.283699 1_2:+65767373 Msa0085590:CDS
CCGATGACATTTGATGGTTC+TGG 0.284750 1_2:+65767796 Msa0085590:CDS
GTTCGCGAATGCGTCACTTT+AGG 0.296196 1_2:+65764599 Msa0085590:five_prime_UTR
CACATACACATTAGTGAACT+TGG 0.296288 1_2:-65766071 None:intergenic
GGGCTTCCTGGGTACCATCC+AGG 0.299327 1_2:+65767384 Msa0085590:CDS
ATCCATGCCATTTCGATTGT+TGG 0.315102 1_2:-65767755 None:intergenic
GCTGCAGTTGAGAAGTTAAA+TGG 0.330381 1_2:+65766244 Msa0085590:CDS
ACTGCAGCTGCAGCTGAATC+TGG 0.332361 1_2:-65766229 None:intergenic
GGAATGGCACCGCTGGCTGC+AGG 0.341384 1_2:+65767363 Msa0085590:CDS
TACCGCTTTATTTGCTTCCT+CGG 0.346237 1_2:-65766713 None:intergenic
TTGGAACTGTAACATCTTGC+AGG 0.347871 1_2:+65766461 Msa0085590:CDS
CAGCCCACCAATAACTTATC+TGG 0.350131 1_2:-65768682 None:intergenic
CCCTGGTGGAATGGCACCGC+TGG 0.351683 1_2:+65767356 Msa0085590:CDS
CAACCAAGGGTATAGATATA+TGG 0.354482 1_2:+65767732 Msa0085590:CDS
CATGGTCATAGCAAGGGTTC+TGG 0.362998 1_2:+65766670 Msa0085590:CDS
AAAGGTCTCTGAGGCATTGC+AGG 0.369465 1_2:+65768461 Msa0085590:CDS
AGAGAGGAAGGCTCAATTGC+AGG 0.371884 1_2:+65766882 Msa0085590:CDS
ACCTTTGCAGTATGTTGGTT+TGG 0.374003 1_2:-65768366 None:intergenic
CATGCCATCCAACTGTTTGA+TGG 0.376643 1_2:-65765975 None:intergenic
GCCCCTCAGCAGTTGTATTA+CGG 0.376872 1_2:+65767420 Msa0085590:CDS
TGAGAAAACATGATACGAAT+AGG 0.384527 1_2:-65765752 None:intergenic
TGGCCCTGTACTTTCTTGTA+AGG 0.384907 1_2:+65765877 Msa0085590:CDS
CGGATAGGTGCTCGACGAAA+TGG 0.388336 1_2:+65767582 Msa0085590:CDS
ATGTTGCCGATGACATTTGA+TGG 0.389353 1_2:+65767790 Msa0085590:CDS
TAGACCTGAATGATATGAAC+TGG 0.391809 1_2:+65768838 Msa0085590:three_prime_UTR
GGCTTCCTGGGTACCATCCA+GGG 0.399660 1_2:+65767385 Msa0085590:CDS
GACAGTAATGGTCAGTCAAA+AGG 0.400879 1_2:+65765908 Msa0085590:CDS
GGGGCAAGTCTTGGTGCCCC+TGG 0.404417 1_2:-65767402 None:intergenic
GCAACACCAGGCCGCATTCC+AGG 0.405751 1_2:-65767507 None:intergenic
AAGCCCAGTTCATATCATTC+AGG 0.407397 1_2:-65768842 None:intergenic
TTCCAGCAGCAGATCTTGCC+TGG 0.414251 1_2:+65767489 Msa0085590:CDS
AGAGATTCAAGGACATGTTT+TGG 0.414309 1_2:+65768711 Msa0085590:three_prime_UTR
CAGGAAAGGGTTAGGACAAA+TGG 0.422143 1_2:+65766043 Msa0085590:CDS
CCGGTCAATGCTGCCGTCGC+CGG 0.426455 1_2:-65764570 None:intergenic
ATGATAAACAAGTCTATGTT+GGG 0.427846 1_2:+65766005 Msa0085590:CDS
CTCCAAAGACAGGGTCAAAA+CGG 0.427897 1_2:+65767555 Msa0085590:CDS
CTCAACGTGATCCAAGTGTT+CGG 0.429454 1_2:+65765771 Msa0085590:CDS
CTCAACTTCACTCCTCTGAA+TGG 0.432562 1_2:+65765725 Msa0085590:five_prime_UTR
TGATATGGCATAACAAAATT+CGG 0.436617 1_2:-65767531 None:intergenic
AATTCTTTCCTGCTCGAACT+TGG 0.439587 1_2:-65766344 None:intergenic
GATTCTGCTGCACATGTTGG+AGG 0.441316 1_2:-65767608 None:intergenic
TTCGCCACCAGGAAAGGGTT+AGG 0.441421 1_2:+65766035 Msa0085590:CDS
AAAGCCTTTGTTTGTTGCTG+TGG 0.442545 1_2:+65766846 Msa0085590:CDS
TGGCCATATATCTATACCCT+TGG 0.446363 1_2:-65767735 None:intergenic
ATCTTGCCTGGAATGCGGCC+TGG 0.447751 1_2:+65767501 Msa0085590:CDS
GTTGCATTATTAGGTGATGT+TGG 0.448677 1_2:+65766642 Msa0085590:intron
GCCATATCAGCTCCAAAGAC+AGG 0.451036 1_2:+65767545 Msa0085590:CDS
CAAGTCTTGGTGCCCCTGGA+TGG 0.453330 1_2:-65767398 None:intergenic
TGCTTCCTCGGGAGTAGAAA+AGG 0.455695 1_2:-65766701 None:intergenic
ACAGTCATGAAAGATGCAAA+TGG 0.458938 1_2:+65766169 Msa0085590:CDS
CCCTGTACTTTCTTGTAAGG+TGG 0.459223 1_2:+65765880 Msa0085590:CDS
TTGTTTCAATTAGGGTCTGT+AGG 0.459272 1_2:+65764688 Msa0085590:five_prime_UTR
GTCTCCGAATGTGGTGGCTC+CGG 0.462851 1_2:+65764551 Msa0085590:five_prime_UTR
GACAGGGATGTTGCTTGAAA+TGG 0.465292 1_2:+65768389 Msa0085590:CDS
AATGATAAACAAGTCTATGT+TGG 0.465684 1_2:+65766004 Msa0085590:CDS
CCTGGACGCTGATTATCAAT+AGG 0.467031 1_2:-65767832 None:intergenic
TTCATACCACCTCAGCCTGC+TGG 0.468479 1_2:+65767459 Msa0085590:CDS
TCCAAAGACAGGGTCAAAAC+GGG 0.471481 1_2:+65767556 Msa0085590:CDS
GTCGCCGGAGCCACCACATT+CGG 0.473001 1_2:-65764555 None:intergenic
CCGGCGACGGCAGCATTGAC+CGG 0.477791 1_2:+65764570 Msa0085590:five_prime_UTR
GTCCTTCATGAAGCTGCATC+GGG 0.478100 1_2:+65768483 Msa0085590:CDS
ACCGCTTTATTTGCTTCCTC+GGG 0.479649 1_2:-65766712 None:intergenic
AATGGGAAATCTAGATGCTT+CGG 0.480445 1_2:+65766187 Msa0085590:CDS
GCCAGCGGTGCCATTCCACC+AGG 0.481094 1_2:-65767357 None:intergenic
CTGTCACCTTTGCAGTATGT+TGG 0.481467 1_2:-65768371 None:intergenic
TAGCAAGGGTTCTGGTTTCG+TGG 0.481599 1_2:+65766678 Msa0085590:CDS
TCAACTTCACTCCTCTGAAT+GGG 0.482554 1_2:+65765726 Msa0085590:five_prime_UTR
GAATGTGGTGGCTCCGGCGA+CGG 0.484230 1_2:+65764557 Msa0085590:five_prime_UTR
AACTGCTGAGGGGCAAGTCT+TGG 0.488367 1_2:-65767411 None:intergenic
TATATGGCCAACAATCGAAA+TGG 0.488751 1_2:+65767748 Msa0085590:CDS
TTCCAGGCAAGATCTGCTGC+TGG 0.488761 1_2:-65767491 None:intergenic
GCACTAGTTATCTTGCCAAA+GGG 0.490127 1_2:-65766145 None:intergenic
GTTGAGAAGTTCCTTTGCAT+TGG 0.492750 1_2:-65765708 None:intergenic
CAACATACTGCAAAGGTGAC+AGG 0.494098 1_2:+65768372 Msa0085590:CDS
GAATGGCACCGCTGGCTGCA+GGG 0.495319 1_2:+65767364 Msa0085590:CDS
CAGACTAGGCGATCCTCTCT+TGG 0.498348 1_2:+65764714 Msa0085590:five_prime_UTR
TGTTTCAATTAGGGTCTGTA+GGG 0.499273 1_2:+65764689 Msa0085590:five_prime_UTR
CAATGTGTTCATTAAGAACC+TGG 0.502190 1_2:+65765808 Msa0085590:CDS
CCTATTGATAATCAGCGTCC+AGG 0.504071 1_2:+65767832 Msa0085590:CDS
AATCCGTTCCCCTGGTGGAA+TGG 0.506540 1_2:+65767347 Msa0085590:CDS
TGTGATCAATTGATGTGTCC+AGG 0.506638 1_2:-65765826 None:intergenic
CGCATTCGCGAACAGTCCTC+CGG 0.507005 1_2:-65764589 None:intergenic
GATCCAAGTGTTCGGAAAAG+TGG 0.507647 1_2:+65765779 Msa0085590:CDS
TCTGTTTAGCCAAGTCGCTC+AGG 0.509218 1_2:+65764665 Msa0085590:five_prime_UTR
CTTGATTCTGCTGCACATGT+TGG 0.509410 1_2:-65767611 None:intergenic
GTCCAGTTGAATGAAATGAA+TGG 0.510076 1_2:+65766808 Msa0085590:intron
TTTGCTCAAATCCGTTCCCC+TGG 0.511063 1_2:+65767339 Msa0085590:CDS
AGTGTTCGGAAAAGTGGATC+GGG 0.517337 1_2:+65765785 Msa0085590:CDS
ATACCATGCGCTGATTGTCT+GGG 0.517628 1_2:-65767891 None:intergenic
GGTCCTTCATGAAGCTGCAT+CGG 0.518569 1_2:+65768482 Msa0085590:CDS
ACAGTAATGGTCAGTCAAAA+GGG 0.518664 1_2:+65765909 Msa0085590:CDS
TCAAATGTCATCGGCAACAT+TGG 0.519004 1_2:-65767787 None:intergenic
GGCTGAGGTGGTATGAAGCC+AGG 0.520624 1_2:-65767453 None:intergenic
TGTCAACTTCACCAATGCTC+AGG 0.521040 1_2:+65764746 Msa0085590:five_prime_UTR
CATATATCTATACCCTTGGT+TGG 0.521460 1_2:-65767731 None:intergenic
TCTGAAGTTGGTGATCAGCT+TGG 0.524358 1_2:+65768507 Msa0085590:CDS
GCGAATGCGTCACTTTAGGT+TGG 0.526945 1_2:+65764603 Msa0085590:five_prime_UTR
GAATGAAATGAATGGAAAGT+TGG 0.530915 1_2:+65766816 Msa0085590:CDS
GTGCCATTCCACCAGGGGAA+CGG 0.531086 1_2:-65767350 None:intergenic
GCCACCTTACAAGAAAGTAC+AGG 0.531089 1_2:-65765881 None:intergenic
TGCACTAGTTATCTTGCCAA+AGG 0.533023 1_2:-65766146 None:intergenic
CAGTCATGAAAGATGCAAAT+GGG 0.535240 1_2:+65766170 Msa0085590:CDS
CCAAATCCAGCAGGCTGAGG+TGG 0.536975 1_2:-65767465 None:intergenic
GGCTGATATGTAGAGATTCA+AGG 0.536980 1_2:+65768700 Msa0085590:three_prime_UTR
TTGCCAGATAAGTTATTGGT+GGG 0.540316 1_2:+65768679 Msa0085590:three_prime_UTR
TGCTGGAAACCAAATCCAGC+AGG 0.541904 1_2:-65767474 None:intergenic
TATTACGGTCAAGGCACACC+TGG 0.547147 1_2:+65767435 Msa0085590:CDS
AGCAGATATGAGAAATTGCA+AGG 0.548808 1_2:+65766367 Msa0085590:CDS
TTTGCCAGATAAGTTATTGG+TGG 0.549894 1_2:+65768678 Msa0085590:three_prime_UTR
GGTGCCCCTGGATGGTACCC+AGG 0.551085 1_2:-65767390 None:intergenic
AATGGTCAGTCAAAAGGGTA+TGG 0.555474 1_2:+65765914 Msa0085590:CDS
TTGAAACAACCTGAGCGACT+TGG 0.559301 1_2:-65764674 None:intergenic
CGAATAGGTTTCCCATTCAG+AGG 0.559642 1_2:-65765737 None:intergenic
GCTTCCTGGGTACCATCCAG+GGG 0.561102 1_2:+65767386 Msa0085590:CDS
GACAGGGTCAAAACGGGCAA+CGG 0.561682 1_2:+65767562 Msa0085590:CDS
ACATACACATTAGTGAACTT+GGG 0.561743 1_2:-65766070 None:intergenic
ACAAAATTCGGAGCAACACC+AGG 0.561825 1_2:-65767519 None:intergenic
CTTTAGGTTGGCGATCTCGA+AGG 0.562125 1_2:+65764615 Msa0085590:five_prime_UTR
CCAGGAAGCCCTGCAGCCAG+CGG 0.562572 1_2:-65767372 None:intergenic
GCTCAAATCCGTTCCCCTGG+TGG 0.562712 1_2:+65767342 Msa0085590:CDS
TTTAGGTTGGCGATCTCGAA+GGG 0.563880 1_2:+65764616 Msa0085590:five_prime_UTR
CGAAATGGCATGGATCTAGC+AGG 0.564881 1_2:+65767763 Msa0085590:CDS
GGATTCACATGGTCATAGCA+AGG 0.565505 1_2:+65766663 Msa0085590:CDS
AATTGAAATTATCAGATGCT+CGG 0.569025 1_2:+65768309 Msa0085590:intron
TAAGATGAATCACTTCGGAT+TGG 0.570286 1_2:-65768413 None:intergenic
GGCCAACAATCGAAATGGCA+TGG 0.570608 1_2:+65767753 Msa0085590:CDS
TATGTTGGTTTGGTGTAAGA+CGG 0.571900 1_2:-65768356 None:intergenic
TTCAATAAGATGAATCACTT+CGG 0.573383 1_2:-65768418 None:intergenic
AAACTCACCATCCTGAGCAT+TGG 0.573445 1_2:-65764757 None:intergenic
TTGCATCGTAACTCCAACCA+AGG 0.573794 1_2:+65767718 Msa0085590:CDS
GGTCAAAACGGGCAACGGAT+AGG 0.575047 1_2:+65767567 Msa0085590:CDS
GACCGTAATACAACTGCTGA+GGG 0.575479 1_2:-65767422 None:intergenic
ATCCCGATGCAGCTTCATGA+AGG 0.575668 1_2:-65768485 None:intergenic
GAGGCAAGTGATGTAGACCC+TGG 0.581109 1_2:-65767850 None:intergenic
AAGTGTTCGGAAAAGTGGAT+CGG 0.582522 1_2:+65765784 Msa0085590:CDS
CAGCAGTTGTATTACGGTCA+AGG 0.584506 1_2:+65767426 Msa0085590:CDS
TGGAACTGTAACATCTTGCA+GGG 0.587771 1_2:+65766462 Msa0085590:CDS
AAACCAAATCCAGCAGGCTG+AGG 0.590059 1_2:-65767468 None:intergenic
TGAAGTAATTTCAGCTGCAG+TGG 0.592647 1_2:+65768549 Msa0085590:exon
GACATAAGCGTAACCAAGAG+AGG 0.592663 1_2:-65764727 None:intergenic
CCAGAACCATCAAATGTCAT+CGG 0.594053 1_2:-65767796 None:intergenic
CCATATCAGCTCCAAAGACA+GGG 0.596118 1_2:+65767546 Msa0085590:CDS
AACATACTGCAAAGGTGACA+GGG 0.597579 1_2:+65768373 Msa0085590:CDS
GTTGAAAGCCAAGTTCGAGC+AGG 0.598139 1_2:+65766336 Msa0085590:CDS
CTATTGATAATCAGCGTCCA+GGG 0.600399 1_2:+65767833 Msa0085590:CDS
CACTAGTTATCTTGCCAAAG+GGG 0.600793 1_2:-65766144 None:intergenic
GCTGCATCGGGATCTGAAGT+TGG 0.602004 1_2:+65768495 Msa0085590:CDS
TTCTGAAGCATCAACTGATG+AGG 0.602081 1_2:+65766102 Msa0085590:CDS
GATTCACATGGTCATAGCAA+GGG 0.602587 1_2:+65766664 Msa0085590:CDS
TCAGCGCAAAGAAGAGAGGA+AGG 0.604652 1_2:+65766870 Msa0085590:CDS
TTGGTGTAAGACGGTCCACA+AGG 0.604765 1_2:-65768347 None:intergenic
AAAGAGTGCCATCAAACAGT+TGG 0.606237 1_2:+65765967 Msa0085590:CDS
AGCAGATCTTGCCTGGAATG+CGG 0.606792 1_2:+65767496 Msa0085590:CDS
GATGGTTCAGTCTCCGAATG+TGG 0.608912 1_2:+65764542 Msa0085590:five_prime_UTR
AGACCTGAATGATATGAACT+GGG 0.611208 1_2:+65768839 Msa0085590:three_prime_UTR
CAGCGGTGCCATTCCACCAG+GGG 0.613136 1_2:-65767355 None:intergenic
CCACCTTACAAGAAAGTACA+GGG 0.613727 1_2:-65765880 None:intergenic
AACTTCACCAATGCTCAGGA+TGG 0.614190 1_2:+65764750 Msa0085590:five_prime_UTR
TGAAATGAATGGAAAGTTGG+TGG 0.617759 1_2:+65766819 Msa0085590:CDS
TGAGCCACAGCAACAAACAA+AGG 0.620998 1_2:-65766850 None:intergenic
GGTTCAGTCTCCGAATGTGG+TGG 0.623008 1_2:+65764545 Msa0085590:five_prime_UTR
AGTGCCATCAAACAGTTGGA+TGG 0.623280 1_2:+65765971 Msa0085590:CDS
TGGCTCAGCGCAAAGAAGAG+AGG 0.624005 1_2:+65766866 Msa0085590:CDS
GGGTCTGTAGGGATCAGACT+AGG 0.624207 1_2:+65764700 Msa0085590:five_prime_UTR
TGACCGTAATACAACTGCTG+AGG 0.627393 1_2:-65767423 None:intergenic
AACTGCTATCAATGATGACA+AGG 0.629314 1_2:+65766267 Msa0085590:CDS
TCAATTGAGATTCTTCGTAG+AGG 0.631198 1_2:+65768793 Msa0085590:three_prime_UTR
TGAACATCTATATCCCCTTG+TGG 0.633882 1_2:+65768332 Msa0085590:CDS
GGTGTAAGACGGTCCACAAG+GGG 0.633898 1_2:-65768345 None:intergenic
ACATTCGGAGACTGAACCAT+CGG 0.635247 1_2:-65764540 None:intergenic
TTGTCCTAACCCTTTCCTGG+TGG 0.635698 1_2:-65766039 None:intergenic
ACCAAACCAACATACTGCAA+AGG 0.637186 1_2:+65768365 Msa0085590:CDS
GAAATGAATGGAAAGTTGGT+GGG 0.639653 1_2:+65766820 Msa0085590:CDS
TACCATGCGCTGATTGTCTG+GGG 0.640655 1_2:-65767890 None:intergenic
GCAGATATGAGAAATTGCAA+GGG 0.641236 1_2:+65766368 Msa0085590:CDS
GGACACATCAATTGATCACA+AGG 0.641302 1_2:+65765829 Msa0085590:CDS
TAGGTGATGTTGGATTCACA+TGG 0.645055 1_2:+65766652 Msa0085590:intron
TACCCCAGACAATCAGCGCA+TGG 0.646578 1_2:+65767888 Msa0085590:CDS
GGTAGCAGAAGCTAAAGCAG+AGG 0.647511 1_2:-65767869 None:intergenic
CCAGCGGTGCCATTCCACCA+GGG 0.647668 1_2:-65767356 None:intergenic
CTCGAAGGGAGTGTGAACGA+AGG 0.652910 1_2:+65764630 Msa0085590:five_prime_UTR
CAGATATGAGAAATTGCAAG+GGG 0.668625 1_2:+65766369 Msa0085590:CDS
TGGTGTAAGACGGTCCACAA+GGG 0.670946 1_2:-65768346 None:intergenic
AAGGTGGCTCTTGACAGTAA+TGG 0.676259 1_2:+65765896 Msa0085590:CDS
TCCCGAGGAAGCAAATAAAG+CGG 0.679076 1_2:+65766711 Msa0085590:CDS
GCGACGGCAGCATTGACCGG+AGG 0.692922 1_2:+65764573 Msa0085590:five_prime_UTR
TGCATCGTAACTCCAACCAA+GGG 0.699834 1_2:+65767719 Msa0085590:CDS
ACCGTAATACAACTGCTGAG+GGG 0.736849 1_2:-65767421 None:intergenic
TATTTGTGGGGAGAGCTCAG+AGG 0.742211 1_2:+65766293 Msa0085590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTCTTAAAATTTTA+TGG - chr1_2:65765074-65765093 None:intergenic 10.0%
!!! TATTAATTTGTATTATTTGA+CGG + chr1_2:65765484-65765503 Msa0085590:intron 10.0%
!! TAGTTATTAAAAATATCTTA+TGG + chr1_2:65765638-65765657 Msa0085590:intron 10.0%
!! AAAGTAAATAAATGTTTAAA+GGG - chr1_2:65767230-65767249 None:intergenic 10.0%
!! GTTTGAATAATTTAATTAAA+GGG - chr1_2:65768021-65768040 None:intergenic 10.0%
!! TGTTTGAATAATTTAATTAA+AGG - chr1_2:65768022-65768041 None:intergenic 10.0%
!!! TTAATTGTTTCTTGTTAATT+TGG + chr1_2:65764830-65764849 Msa0085590:intron 15.0%
!! CATCCATAATAATTAATATA+TGG + chr1_2:65765588-65765607 Msa0085590:intron 15.0%
!! CATCCATATATTAATTATTA+TGG - chr1_2:65765594-65765613 None:intergenic 15.0%
!! CATAATAATTAATATATGGA+TGG + chr1_2:65765592-65765611 Msa0085590:intron 15.0%
!! AAAAATCAAGAAACAAAAAT+AGG - chr1_2:65765682-65765701 None:intergenic 15.0%
!! AAATTATATGTTGCATTATT+AGG + chr1_2:65766633-65766652 Msa0085590:intron 15.0%
!! AAAAATGAATATTTCAACAA+AGG - chr1_2:65767013-65767032 None:intergenic 15.0%
!!! TATTCATTTTTGCTTATAAT+TGG + chr1_2:65767076-65767095 Msa0085590:intron 15.0%
!! GAAAGTAAATAAATGTTTAA+AGG - chr1_2:65767231-65767250 None:intergenic 15.0%
!! AGTTTATTCATAAAATCAAT+GGG + chr1_2:65767283-65767302 Msa0085590:intron 15.0%
!! TTATAAATTAACTGATACAA+AGG - chr1_2:65768251-65768270 None:intergenic 15.0%
!!! TTGATAAGCTATTATTATTT+TGG + chr1_2:65768615-65768634 Msa0085590:three_prime_UTR 15.0%
!!! TGATAAGCTATTATTATTTT+GGG + chr1_2:65768616-65768635 Msa0085590:three_prime_UTR 15.0%
!! TCTAATAAGTCATTCTATAT+AGG - chr1_2:65765274-65765293 None:intergenic 20.0%
!! AATAGATACAACTATAAACA+AGG - chr1_2:65765388-65765407 None:intergenic 20.0%
!! ATAAATACATAAAAATGGGT+TGG - chr1_2:65765422-65765441 None:intergenic 20.0%
!! ATAAAATTGACCAGTAAAAA+AGG - chr1_2:65766593-65766612 None:intergenic 20.0%
!! AATAAATGTTTAAAGGGAAA+CGG - chr1_2:65767224-65767243 None:intergenic 20.0%
!! GAGTTTATTCATAAAATCAA+TGG + chr1_2:65767282-65767301 Msa0085590:intron 20.0%
!! TCATATGCATAATTTAAACA+CGG + chr1_2:65768114-65768133 Msa0085590:intron 20.0%
!!! ACTTGTTTTCTATTTTTTCT+TGG + chr1_2:65768182-65768201 Msa0085590:intron 20.0%
!!! GATAAGCTATTATTATTTTG+GGG + chr1_2:65768617-65768636 Msa0085590:three_prime_UTR 20.0%
! ATGTTCCTTTCTCAAATTAT+CGG - chr1_2:65764968-65764987 None:intergenic 25.0%
! ATCAATGTAATCATAAGTGT+CGG + chr1_2:65765098-65765117 Msa0085590:intron 25.0%
! AATCCATATGAACAATTGTA+AGG + chr1_2:65765345-65765364 Msa0085590:intron 25.0%
!! TTTTAACGGCATATTAATGT+TGG + chr1_2:65765441-65765460 Msa0085590:intron 25.0%
! TTTAACGGCATATTAATGTT+GGG + chr1_2:65765442-65765461 Msa0085590:intron 25.0%
!!! TTTGTTTCTTGATTTTTCAG+CGG + chr1_2:65765685-65765704 Msa0085590:intron 25.0%
! AATGATAAACAAGTCTATGT+TGG + chr1_2:65766004-65766023 Msa0085590:CDS 25.0%
! ATGATAAACAAGTCTATGTT+GGG + chr1_2:65766005-65766024 Msa0085590:CDS 25.0%
!! AAAGATCTATTTTCTGAGTT+TGG + chr1_2:65766442-65766461 Msa0085590:CDS 25.0%
! AATAAATATATGCAGAGAGA+CGG - chr1_2:65766512-65766531 None:intergenic 25.0%
! GTATATAATGCACACAAAAA+AGG - chr1_2:65766560-65766579 None:intergenic 25.0%
! ATAAATGTTTAAAGGGAAAC+GGG - chr1_2:65767223-65767242 None:intergenic 25.0%
! TTATTCATAAAATCAATGGG+TGG + chr1_2:65767286-65767305 Msa0085590:intron 25.0%
!!! TAACAAGTTATTTTCTCTGT+AGG + chr1_2:65767311-65767330 Msa0085590:intron 25.0%
! TGATATGGCATAACAAAATT+CGG - chr1_2:65767534-65767553 None:intergenic 25.0%
!!! CATTTGGTATTTTTACATGT+AGG + chr1_2:65767924-65767943 Msa0085590:intron 25.0%
! ATTGTTTCCTTAGAGTAAAT+TGG + chr1_2:65767955-65767974 Msa0085590:intron 25.0%
! ATTAAAGGGTTAAAATTGTG+AGG - chr1_2:65768007-65768026 None:intergenic 25.0%
!! GTGTGAGAAATGTAATTTTT+CGG + chr1_2:65768278-65768297 Msa0085590:intron 25.0%
! AATTGAAATTATCAGATGCT+CGG + chr1_2:65768309-65768328 Msa0085590:intron 25.0%
! TTCAATAAGATGAATCACTT+CGG - chr1_2:65768421-65768440 None:intergenic 25.0%
!! ATTTTTGCCAGATAAGTTAT+TGG + chr1_2:65768675-65768694 Msa0085590:three_prime_UTR 25.0%
! CTAGAAGCTAAAAATGAAAA+TGG - chr1_2:65768754-65768773 None:intergenic 25.0%
!! ATGGTGTTATGTATTTGTGT+CGG - chr1_2:65765055-65765074 None:intergenic 30.0%
ATTGTACAAAGCTAAGTGTT+GGG + chr1_2:65765226-65765245 Msa0085590:intron 30.0%
CATCCTTACAATTGTTCATA+TGG - chr1_2:65765351-65765370 None:intergenic 30.0%
ATGAACAATTGTAAGGATGA+AGG + chr1_2:65765352-65765371 Msa0085590:intron 30.0%
TTAACGGCATATTAATGTTG+GGG + chr1_2:65765443-65765462 Msa0085590:intron 30.0%
!! ATATTAATGTTGGGGGTATT+AGG + chr1_2:65765451-65765470 Msa0085590:intron 30.0%
! AAATTTGTGCACAGATTTTG+TGG - chr1_2:65765529-65765548 None:intergenic 30.0%
! ACTGTTGTTATCATAGGTTT+TGG + chr1_2:65765615-65765634 Msa0085590:intron 30.0%
TGAGAAAACATGATACGAAT+AGG - chr1_2:65765755-65765774 None:intergenic 30.0%
ACATACACATTAGTGAACTT+GGG - chr1_2:65766073-65766092 None:intergenic 30.0%
!!! TGATGACAAGGTTTTATTTG+TGG + chr1_2:65766279-65766298 Msa0085590:CDS 30.0%
!!! GATGACAAGGTTTTATTTGT+GGG + chr1_2:65766280-65766299 Msa0085590:CDS 30.0%
!!! ATGACAAGGTTTTATTTGTG+GGG + chr1_2:65766281-65766300 Msa0085590:CDS 30.0%
! AATCGTCATCAAGATTTTTC+AGG - chr1_2:65766405-65766424 None:intergenic 30.0%
!!! TTCCAACATACCTTTTTTAC+TGG + chr1_2:65766580-65766599 Msa0085590:intron 30.0%
TTCCATTCATTTCATTCAAC+TGG - chr1_2:65766813-65766832 None:intergenic 30.0%
GAATGAAATGAATGGAAAGT+TGG + chr1_2:65766816-65766835 Msa0085590:CDS 30.0%
TTCATTATTAAGTAGCTGAC+TGG + chr1_2:65766953-65766972 Msa0085590:intron 30.0%
TGGCTATAGCTTATAATTAG+TGG + chr1_2:65766973-65766992 Msa0085590:intron 30.0%
!! TCTAAGTTTTATCAACCATG+AGG - chr1_2:65767195-65767214 None:intergenic 30.0%
ATTTACTTTCACAGTTCTCA+TGG + chr1_2:65767241-65767260 Msa0085590:intron 30.0%
TGGTATGTATAAGTTGCATT+TGG + chr1_2:65767908-65767927 Msa0085590:intron 30.0%
CAGAATACCAATTTACTCTA+AGG - chr1_2:65767965-65767984 None:intergenic 30.0%
TTTAAACACGGATCAAATTG+AGG + chr1_2:65768126-65768145 Msa0085590:intron 30.0%
TTGAGGTACATTACTAACTA+AGG + chr1_2:65768143-65768162 Msa0085590:intron 30.0%
GAGCATCTGATAATTTCAAT+TGG - chr1_2:65768310-65768329 None:intergenic 30.0%
!!! CTCAGAGACCTTTATTTTTA+GGG - chr1_2:65768454-65768473 None:intergenic 30.0%
TTGTTTCAATTAGGGTCTGT+AGG + chr1_2:65764688-65764707 Msa0085590:five_prime_UTR 35.0%
TGTTTCAATTAGGGTCTGTA+GGG + chr1_2:65764689-65764708 Msa0085590:five_prime_UTR 35.0%
ATTGTGATCATGTGTCATGT+TGG + chr1_2:65764993-65765012 Msa0085590:intron 35.0%
TGTTGGACACTAACATGTAT+CGG + chr1_2:65765010-65765029 Msa0085590:intron 35.0%
!! GTAATCATAAGTGTCGGTAT+CGG + chr1_2:65765104-65765123 Msa0085590:intron 35.0%
! ACGTCTTCAATAAGAAGTGT+CGG + chr1_2:65765153-65765172 Msa0085590:intron 35.0%
! AAGAATCTTTGTAGCATCGA+AGG - chr1_2:65765202-65765221 None:intergenic 35.0%
CATTGTACAAAGCTAAGTGT+TGG + chr1_2:65765225-65765244 Msa0085590:intron 35.0%
TAACGGCATATTAATGTTGG+GGG + chr1_2:65765444-65765463 Msa0085590:intron 35.0%
CAATGTGTTCATTAAGAACC+TGG + chr1_2:65765808-65765827 Msa0085590:CDS 35.0%
ACAGTAATGGTCAGTCAAAA+GGG + chr1_2:65765909-65765928 Msa0085590:CDS 35.0%
CACATACACATTAGTGAACT+TGG - chr1_2:65766074-65766093 None:intergenic 35.0%
! GAGGACTTGAAACAACTTTT+TGG + chr1_2:65766121-65766140 Msa0085590:CDS 35.0%
ACAGTCATGAAAGATGCAAA+TGG + chr1_2:65766169-65766188 Msa0085590:CDS 35.0%
CAGTCATGAAAGATGCAAAT+GGG + chr1_2:65766170-65766189 Msa0085590:CDS 35.0%
AATGGGAAATCTAGATGCTT+CGG + chr1_2:65766187-65766206 Msa0085590:CDS 35.0%
AACTGCTATCAATGATGACA+AGG + chr1_2:65766267-65766286 Msa0085590:CDS 35.0%
AGCAGATATGAGAAATTGCA+AGG + chr1_2:65766367-65766386 Msa0085590:CDS 35.0%
GCAGATATGAGAAATTGCAA+GGG + chr1_2:65766368-65766387 Msa0085590:CDS 35.0%
CAGATATGAGAAATTGCAAG+GGG + chr1_2:65766369-65766388 Msa0085590:CDS 35.0%
! GACCAGTAAAAAAGGTATGT+TGG - chr1_2:65766585-65766604 None:intergenic 35.0%
GTTGCATTATTAGGTGATGT+TGG + chr1_2:65766642-65766661 Msa0085590:intron 35.0%
GTCCAGTTGAATGAAATGAA+TGG + chr1_2:65766808-65766827 Msa0085590:intron 35.0%
TGAAATGAATGGAAAGTTGG+TGG + chr1_2:65766819-65766838 Msa0085590:CDS 35.0%
! GAAATGAATGGAAAGTTGGT+GGG + chr1_2:65766820-65766839 Msa0085590:CDS 35.0%
CATTCCTTTATGAATCCTCA+TGG + chr1_2:65767177-65767196 Msa0085590:intron 35.0%
TCAACCATGAGGATTCATAA+AGG - chr1_2:65767184-65767203 None:intergenic 35.0%
CATATATCTATACCCTTGGT+TGG - chr1_2:65767734-65767753 None:intergenic 35.0%
! CAACCAAGGGTATAGATATA+TGG + chr1_2:65767732-65767751 Msa0085590:CDS 35.0%
TATATGGCCAACAATCGAAA+TGG + chr1_2:65767748-65767767 Msa0085590:CDS 35.0%
!! GTTACTCCTTTTGCCATTTA+TGG + chr1_2:65768048-65768067 Msa0085590:intron 35.0%
!! TCCTTTTGCCATTTATGGTA+GGG + chr1_2:65768053-65768072 Msa0085590:intron 35.0%
!! TATGTTGGTTTGGTGTAAGA+CGG - chr1_2:65768359-65768378 None:intergenic 35.0%
TAAGATGAATCACTTCGGAT+TGG - chr1_2:65768416-65768435 None:intergenic 35.0%
!!! ACCTTTATTTTTAGGGCATC+GGG - chr1_2:65768447-65768466 None:intergenic 35.0%
!!! GACCTTTATTTTTAGGGCAT+CGG - chr1_2:65768448-65768467 None:intergenic 35.0%
!!! CCTCAGAGACCTTTATTTTT+AGG - chr1_2:65768455-65768474 None:intergenic 35.0%
CCTAAAAATAAAGGTCTCTG+AGG + chr1_2:65768452-65768471 Msa0085590:CDS 35.0%
TTTGCCAGATAAGTTATTGG+TGG + chr1_2:65768678-65768697 Msa0085590:three_prime_UTR 35.0%
TTGCCAGATAAGTTATTGGT+GGG + chr1_2:65768679-65768698 Msa0085590:three_prime_UTR 35.0%
! AGAGATTCAAGGACATGTTT+TGG + chr1_2:65768711-65768730 Msa0085590:three_prime_UTR 35.0%
TCAATTGAGATTCTTCGTAG+AGG + chr1_2:65768793-65768812 Msa0085590:three_prime_UTR 35.0%
! TCGCTCAGGTTGTTTCAATT+AGG + chr1_2:65764679-65764698 Msa0085590:five_prime_UTR 40.0%
! CGCTCAGGTTGTTTCAATTA+GGG + chr1_2:65764680-65764699 Msa0085590:five_prime_UTR 40.0%
CCTTTCTCAAATTATCGGTG+TGG - chr1_2:65764963-65764982 None:intergenic 40.0%
CCACACCGATAATTTGAGAA+AGG + chr1_2:65764960-65764979 Msa0085590:intron 40.0%
TTCTTATTGAAGACGTGTCC+TGG - chr1_2:65765149-65765168 None:intergenic 40.0%
!! TAATGTTGGGGGTATTAGGT+TGG + chr1_2:65765455-65765474 Msa0085590:intron 40.0%
!! GGATGGACTGTTGTTATCAT+AGG + chr1_2:65765609-65765628 Msa0085590:intron 40.0%
GTTGAGAAGTTCCTTTGCAT+TGG - chr1_2:65765711-65765730 None:intergenic 40.0%
TCAACTTCACTCCTCTGAAT+GGG + chr1_2:65765726-65765745 Msa0085590:five_prime_UTR 40.0%
AAGTGTTCGGAAAAGTGGAT+CGG + chr1_2:65765784-65765803 Msa0085590:CDS 40.0%
TGTGATCAATTGATGTGTCC+AGG - chr1_2:65765829-65765848 None:intergenic 40.0%
GGACACATCAATTGATCACA+AGG + chr1_2:65765829-65765848 Msa0085590:CDS 40.0%
! CCACCTTACAAGAAAGTACA+GGG - chr1_2:65765883-65765902 None:intergenic 40.0%
GACAGTAATGGTCAGTCAAA+AGG + chr1_2:65765908-65765927 Msa0085590:CDS 40.0%
AATGGTCAGTCAAAAGGGTA+TGG + chr1_2:65765914-65765933 Msa0085590:CDS 40.0%
!! AAAGAGTGCCATCAAACAGT+TGG + chr1_2:65765967-65765986 Msa0085590:CDS 40.0%
!! TTCTGAAGCATCAACTGATG+AGG + chr1_2:65766102-65766121 Msa0085590:CDS 40.0%
!! AAACAACTTTTTGGCCCCTT+TGG + chr1_2:65766130-65766149 Msa0085590:CDS 40.0%
CACTAGTTATCTTGCCAAAG+GGG - chr1_2:65766147-65766166 None:intergenic 40.0%
GCACTAGTTATCTTGCCAAA+GGG - chr1_2:65766148-65766167 None:intergenic 40.0%
TGCACTAGTTATCTTGCCAA+AGG - chr1_2:65766149-65766168 None:intergenic 40.0%
GCTGCAGTTGAGAAGTTAAA+TGG + chr1_2:65766244-65766263 Msa0085590:CDS 40.0%
AATTCTTTCCTGCTCGAACT+TGG - chr1_2:65766347-65766366 None:intergenic 40.0%
TTGGAACTGTAACATCTTGC+AGG + chr1_2:65766461-65766480 Msa0085590:CDS 40.0%
TGGAACTGTAACATCTTGCA+GGG + chr1_2:65766462-65766481 Msa0085590:CDS 40.0%
TAGGTGATGTTGGATTCACA+TGG + chr1_2:65766652-65766671 Msa0085590:intron 40.0%
GATTCACATGGTCATAGCAA+GGG + chr1_2:65766664-65766683 Msa0085590:CDS 40.0%
!! TACCGCTTTATTTGCTTCCT+CGG - chr1_2:65766716-65766735 None:intergenic 40.0%
GGTAAGTATTCAAAGAAGCG+TGG + chr1_2:65766732-65766751 Msa0085590:intron 40.0%
! AAAGCCTTTGTTTGTTGCTG+TGG + chr1_2:65766846-65766865 Msa0085590:CDS 40.0%
ACTTTCACAGTTCTCATGGT+CGG + chr1_2:65767245-65767264 Msa0085590:intron 40.0%
TGGCCATATATCTATACCCT+TGG - chr1_2:65767738-65767757 None:intergenic 40.0%
! ATCCATGCCATTTCGATTGT+TGG - chr1_2:65767758-65767777 None:intergenic 40.0%
TCAAATGTCATCGGCAACAT+TGG - chr1_2:65767790-65767809 None:intergenic 40.0%
ATGTTGCCGATGACATTTGA+TGG + chr1_2:65767790-65767809 Msa0085590:CDS 40.0%
CCAGAACCATCAAATGTCAT+CGG - chr1_2:65767799-65767818 None:intergenic 40.0%
! CTATTGATAATCAGCGTCCA+GGG + chr1_2:65767833-65767852 Msa0085590:CDS 40.0%
!! CTCCTTTTGCCATTTATGGT+AGG + chr1_2:65768052-65768071 Msa0085590:intron 40.0%
ACCCTACCATAAATGGCAAA+AGG - chr1_2:65768057-65768076 None:intergenic 40.0%
ATGCTAGACCCTACCATAAA+TGG - chr1_2:65768064-65768083 None:intergenic 40.0%
TGAACATCTATATCCCCTTG+TGG + chr1_2:65768332-65768351 Msa0085590:CDS 40.0%
ACCAAACCAACATACTGCAA+AGG + chr1_2:65768365-65768384 Msa0085590:CDS 40.0%
! ACCTTTGCAGTATGTTGGTT+TGG - chr1_2:65768369-65768388 None:intergenic 40.0%
AACATACTGCAAAGGTGACA+GGG + chr1_2:65768373-65768392 Msa0085590:CDS 40.0%
TCCCGATGCCCTAAAAATAA+AGG + chr1_2:65768443-65768462 Msa0085590:CDS 40.0%
TGAAGTAATTTCAGCTGCAG+TGG + chr1_2:65768549-65768568 Msa0085590:exon 40.0%
GCTTATCAAGCACAAAAACG+CGG - chr1_2:65768604-65768623 None:intergenic 40.0%
GGCTGATATGTAGAGATTCA+AGG + chr1_2:65768700-65768719 Msa0085590:three_prime_UTR 40.0%
!! TTTAGGTTGGCGATCTCGAA+GGG + chr1_2:65764616-65764635 Msa0085590:five_prime_UTR 45.0%
TTGAAACAACCTGAGCGACT+TGG - chr1_2:65764677-65764696 None:intergenic 45.0%
GACATAAGCGTAACCAAGAG+AGG - chr1_2:65764730-65764749 None:intergenic 45.0%
TGTCAACTTCACCAATGCTC+AGG + chr1_2:65764746-65764765 Msa0085590:five_prime_UTR 45.0%
AACTTCACCAATGCTCAGGA+TGG + chr1_2:65764750-65764769 Msa0085590:five_prime_UTR 45.0%
AAACTCACCATCCTGAGCAT+TGG - chr1_2:65764760-65764779 None:intergenic 45.0%
GGACACTAACATGTATCGGA+CGG + chr1_2:65765014-65765033 Msa0085590:intron 45.0%
!! ATTTGTGTCGGTGTCATGTC+TGG - chr1_2:65765043-65765062 None:intergenic 45.0%
TACTGCACATATCAGACACC+AGG + chr1_2:65765128-65765147 Msa0085590:intron 45.0%
!! TTTTTCAGCGGCCAATGCAA+AGG + chr1_2:65765697-65765716 Msa0085590:intron 45.0%
CTCAACTTCACTCCTCTGAA+TGG + chr1_2:65765725-65765744 Msa0085590:five_prime_UTR 45.0%
CGAATAGGTTTCCCATTCAG+AGG - chr1_2:65765740-65765759 None:intergenic 45.0%
CTCAACGTGATCCAAGTGTT+CGG + chr1_2:65765771-65765790 Msa0085590:CDS 45.0%
GATCCAAGTGTTCGGAAAAG+TGG + chr1_2:65765779-65765798 Msa0085590:CDS 45.0%
!! GATCCACTTTTCCGAACACT+TGG - chr1_2:65765785-65765804 None:intergenic 45.0%
AGTGTTCGGAAAAGTGGATC+GGG + chr1_2:65765785-65765804 Msa0085590:CDS 45.0%
! CATGACACTTTTGCTGCGTT+TGG + chr1_2:65765857-65765876 Msa0085590:CDS 45.0%
TGGCCCTGTACTTTCTTGTA+AGG + chr1_2:65765877-65765896 Msa0085590:CDS 45.0%
CCCTGTACTTTCTTGTAAGG+TGG + chr1_2:65765880-65765899 Msa0085590:CDS 45.0%
! GCCACCTTACAAGAAAGTAC+AGG - chr1_2:65765884-65765903 None:intergenic 45.0%
AAGGTGGCTCTTGACAGTAA+TGG + chr1_2:65765896-65765915 Msa0085590:CDS 45.0%
AGTGCCATCAAACAGTTGGA+TGG + chr1_2:65765971-65765990 Msa0085590:CDS 45.0%
CATGCCATCCAACTGTTTGA+TGG - chr1_2:65765978-65765997 None:intergenic 45.0%
! TTTTTGTTCGCCACCAGGAA+AGG + chr1_2:65766029-65766048 Msa0085590:CDS 45.0%
! TTTTGTTCGCCACCAGGAAA+GGG + chr1_2:65766030-65766049 Msa0085590:CDS 45.0%
CATTTGTCCTAACCCTTTCC+TGG - chr1_2:65766045-65766064 None:intergenic 45.0%
CAGGAAAGGGTTAGGACAAA+TGG + chr1_2:65766043-65766062 Msa0085590:CDS 45.0%
GGATTCACATGGTCATAGCA+AGG + chr1_2:65766663-65766682 Msa0085590:CDS 45.0%
TCCCGAGGAAGCAAATAAAG+CGG + chr1_2:65766711-65766730 Msa0085590:CDS 45.0%
!! ACCGCTTTATTTGCTTCCTC+GGG - chr1_2:65766715-65766734 None:intergenic 45.0%
TGAGCCACAGCAACAAACAA+AGG - chr1_2:65766853-65766872 None:intergenic 45.0%
! ATGGTCGGTTGACTGTGTTT+TGG + chr1_2:65767260-65767279 Msa0085590:intron 45.0%
ACCGTAATACAACTGCTGAG+GGG - chr1_2:65767424-65767443 None:intergenic 45.0%
GACCGTAATACAACTGCTGA+GGG - chr1_2:65767425-65767444 None:intergenic 45.0%
TGACCGTAATACAACTGCTG+AGG - chr1_2:65767426-65767445 None:intergenic 45.0%
CAGCAGTTGTATTACGGTCA+AGG + chr1_2:65767426-65767445 Msa0085590:CDS 45.0%
ACAAAATTCGGAGCAACACC+AGG - chr1_2:65767522-65767541 None:intergenic 45.0%
CCATATCAGCTCCAAAGACA+GGG + chr1_2:65767546-65767565 Msa0085590:CDS 45.0%
CTCCAAAGACAGGGTCAAAA+CGG + chr1_2:65767555-65767574 Msa0085590:CDS 45.0%
TCCAAAGACAGGGTCAAAAC+GGG + chr1_2:65767556-65767575 Msa0085590:CDS 45.0%
CTTGATTCTGCTGCACATGT+TGG - chr1_2:65767614-65767633 None:intergenic 45.0%
TTGCATCGTAACTCCAACCA+AGG + chr1_2:65767718-65767737 Msa0085590:CDS 45.0%
TGCATCGTAACTCCAACCAA+GGG + chr1_2:65767719-65767738 Msa0085590:CDS 45.0%
! CCGATGACATTTGATGGTTC+TGG + chr1_2:65767796-65767815 Msa0085590:CDS 45.0%
! CCTGGACGCTGATTATCAAT+AGG - chr1_2:65767835-65767854 None:intergenic 45.0%
! CCTATTGATAATCAGCGTCC+AGG + chr1_2:65767832-65767851 Msa0085590:CDS 45.0%
!! ATACCATGCGCTGATTGTCT+GGG - chr1_2:65767894-65767913 None:intergenic 45.0%
CTGTCACCTTTGCAGTATGT+TGG - chr1_2:65768374-65768393 None:intergenic 45.0%
CAACATACTGCAAAGGTGAC+AGG + chr1_2:65768372-65768391 Msa0085590:CDS 45.0%
! GACAGGGATGTTGCTTGAAA+TGG + chr1_2:65768389-65768408 Msa0085590:CDS 45.0%
!! TCTGAAGTTGGTGATCAGCT+TGG + chr1_2:65768507-65768526 Msa0085590:CDS 45.0%
CAGCCCACCAATAACTTATC+TGG - chr1_2:65768685-65768704 None:intergenic 45.0%
!! TAAAATAAATACATAAAAAT+GGG - chr1_2:65765426-65765445 None:intergenic 5.0%
!! TTAAAATAAATACATAAAAA+TGG - chr1_2:65765427-65765446 None:intergenic 5.0%
!!! TTTTTATGTATTTATTTTAA+CGG + chr1_2:65765427-65765446 Msa0085590:intron 5.0%
GATGGTTCAGTCTCCGAATG+TGG + chr1_2:65764542-65764561 Msa0085590:five_prime_UTR 50.0%
! GTTCGCGAATGCGTCACTTT+AGG + chr1_2:65764599-65764618 Msa0085590:five_prime_UTR 50.0%
! GCGAATGCGTCACTTTAGGT+TGG + chr1_2:65764603-65764622 Msa0085590:five_prime_UTR 50.0%
!! CTTTAGGTTGGCGATCTCGA+AGG + chr1_2:65764615-65764634 Msa0085590:five_prime_UTR 50.0%
TCTGTTTAGCCAAGTCGCTC+AGG + chr1_2:65764665-65764684 Msa0085590:five_prime_UTR 50.0%
!!! TGGGTTTTTTGTTCGCCACC+AGG + chr1_2:65766024-65766043 Msa0085590:CDS 50.0%
TTGTCCTAACCCTTTCCTGG+TGG - chr1_2:65766042-65766061 None:intergenic 50.0%
TATTTGTGGGGAGAGCTCAG+AGG + chr1_2:65766293-65766312 Msa0085590:CDS 50.0%
GTTGAAAGCCAAGTTCGAGC+AGG + chr1_2:65766336-65766355 Msa0085590:CDS 50.0%
CATGGTCATAGCAAGGGTTC+TGG + chr1_2:65766670-65766689 Msa0085590:CDS 50.0%
!! TAGCAAGGGTTCTGGTTTCG+TGG + chr1_2:65766678-65766697 Msa0085590:CDS 50.0%
TGCTTCCTCGGGAGTAGAAA+AGG - chr1_2:65766704-65766723 None:intergenic 50.0%
TCAGCGCAAAGAAGAGAGGA+AGG + chr1_2:65766870-65766889 Msa0085590:CDS 50.0%
AGAGAGGAAGGCTCAATTGC+AGG + chr1_2:65766882-65766901 Msa0085590:CDS 50.0%
TTTGCTCAAATCCGTTCCCC+TGG + chr1_2:65767339-65767358 Msa0085590:CDS 50.0%
GCCCCTCAGCAGTTGTATTA+CGG + chr1_2:65767420-65767439 Msa0085590:CDS 50.0%
TATTACGGTCAAGGCACACC+TGG + chr1_2:65767435-65767454 Msa0085590:CDS 50.0%
AAACCAAATCCAGCAGGCTG+AGG - chr1_2:65767471-65767490 None:intergenic 50.0%
TGCTGGAAACCAAATCCAGC+AGG - chr1_2:65767477-65767496 None:intergenic 50.0%
AGCAGATCTTGCCTGGAATG+CGG + chr1_2:65767496-65767515 Msa0085590:CDS 50.0%
GCCATATCAGCTCCAAAGAC+AGG + chr1_2:65767545-65767564 Msa0085590:CDS 50.0%
!! CCCTGTCTTTGGAGCTGATA+TGG - chr1_2:65767549-65767568 None:intergenic 50.0%
GATTCTGCTGCACATGTTGG+AGG - chr1_2:65767611-65767630 None:intergenic 50.0%
GGCCAACAATCGAAATGGCA+TGG + chr1_2:65767753-65767772 Msa0085590:CDS 50.0%
CGAAATGGCATGGATCTAGC+AGG + chr1_2:65767763-65767782 Msa0085590:CDS 50.0%
GGTAGCAGAAGCTAAAGCAG+AGG - chr1_2:65767872-65767891 None:intergenic 50.0%
!! TACCATGCGCTGATTGTCTG+GGG - chr1_2:65767893-65767912 None:intergenic 50.0%
!! CATACCATGCGCTGATTGTC+TGG - chr1_2:65767895-65767914 None:intergenic 50.0%
TGGTGTAAGACGGTCCACAA+GGG - chr1_2:65768349-65768368 None:intergenic 50.0%
TTGGTGTAAGACGGTCCACA+AGG - chr1_2:65768350-65768369 None:intergenic 50.0%
!! AAAGGTCTCTGAGGCATTGC+AGG + chr1_2:65768461-65768480 Msa0085590:CDS 50.0%
GGTCCTTCATGAAGCTGCAT+CGG + chr1_2:65768482-65768501 Msa0085590:CDS 50.0%
GTCCTTCATGAAGCTGCATC+GGG + chr1_2:65768483-65768502 Msa0085590:CDS 50.0%
ATCCCGATGCAGCTTCATGA+AGG - chr1_2:65768488-65768507 None:intergenic 50.0%
GGTTCAGTCTCCGAATGTGG+TGG + chr1_2:65764545-65764564 Msa0085590:five_prime_UTR 55.0%
! CTCGAAGGGAGTGTGAACGA+AGG + chr1_2:65764630-65764649 Msa0085590:five_prime_UTR 55.0%
GGGTCTGTAGGGATCAGACT+AGG + chr1_2:65764700-65764719 Msa0085590:five_prime_UTR 55.0%
CAGACTAGGCGATCCTCTCT+TGG + chr1_2:65764714-65764733 Msa0085590:five_prime_UTR 55.0%
TTCGCCACCAGGAAAGGGTT+AGG + chr1_2:65766035-65766054 Msa0085590:CDS 55.0%
ACTGCAGCTGCAGCTGAATC+TGG - chr1_2:65766232-65766251 None:intergenic 55.0%
TGGCTCAGCGCAAAGAAGAG+AGG + chr1_2:65766866-65766885 Msa0085590:CDS 55.0%
AATCCGTTCCCCTGGTGGAA+TGG + chr1_2:65767347-65767366 Msa0085590:CDS 55.0%
AACTGCTGAGGGGCAAGTCT+TGG - chr1_2:65767414-65767433 None:intergenic 55.0%
TTCATACCACCTCAGCCTGC+TGG + chr1_2:65767459-65767478 Msa0085590:CDS 55.0%
TTCCAGCAGCAGATCTTGCC+TGG + chr1_2:65767489-65767508 Msa0085590:CDS 55.0%
TTCCAGGCAAGATCTGCTGC+TGG - chr1_2:65767494-65767513 None:intergenic 55.0%
!! GCCCGTTTTGACCCTGTCTT+TGG - chr1_2:65767560-65767579 None:intergenic 55.0%
GACAGGGTCAAAACGGGCAA+CGG + chr1_2:65767562-65767581 Msa0085590:CDS 55.0%
GGTCAAAACGGGCAACGGAT+AGG + chr1_2:65767567-65767586 Msa0085590:CDS 55.0%
CGGATAGGTGCTCGACGAAA+TGG + chr1_2:65767582-65767601 Msa0085590:CDS 55.0%
GAGGCAAGTGATGTAGACCC+TGG - chr1_2:65767853-65767872 None:intergenic 55.0%
TACCCCAGACAATCAGCGCA+TGG + chr1_2:65767888-65767907 Msa0085590:CDS 55.0%
GGTGTAAGACGGTCCACAAG+GGG - chr1_2:65768348-65768367 None:intergenic 55.0%
! GCTGCATCGGGATCTGAAGT+TGG + chr1_2:65768495-65768514 Msa0085590:CDS 55.0%
GTCTCCGAATGTGGTGGCTC+CGG + chr1_2:65764551-65764570 Msa0085590:five_prime_UTR 60.0%
CGCATTCGCGAACAGTCCTC+CGG - chr1_2:65764592-65764611 None:intergenic 60.0%
! CGTGGCCTTTTCTACTCCCG+AGG + chr1_2:65766696-65766715 Msa0085590:CDS 60.0%
GCTCAAATCCGTTCCCCTGG+TGG + chr1_2:65767342-65767361 Msa0085590:CDS 60.0%
! GTGCCATTCCACCAGGGGAA+CGG - chr1_2:65767353-65767372 None:intergenic 60.0%
GGCTTCCTGGGTACCATCCA+GGG + chr1_2:65767385-65767404 Msa0085590:CDS 60.0%
GCTTCCTGGGTACCATCCAG+GGG + chr1_2:65767386-65767405 Msa0085590:CDS 60.0%
!! CAAGTCTTGGTGCCCCTGGA+TGG - chr1_2:65767401-65767420 None:intergenic 60.0%
GGCTGAGGTGGTATGAAGCC+AGG - chr1_2:65767456-65767475 None:intergenic 60.0%
CCAAATCCAGCAGGCTGAGG+TGG - chr1_2:65767468-65767487 None:intergenic 60.0%
CCACCTCAGCCTGCTGGATT+TGG + chr1_2:65767465-65767484 Msa0085590:CDS 60.0%
ATCTTGCCTGGAATGCGGCC+TGG + chr1_2:65767501-65767520 Msa0085590:CDS 60.0%
GTCGCCGGAGCCACCACATT+CGG - chr1_2:65764558-65764577 None:intergenic 65.0%
GAATGTGGTGGCTCCGGCGA+CGG + chr1_2:65764557-65764576 Msa0085590:five_prime_UTR 65.0%
!! CAGCGGTGCCATTCCACCAG+GGG - chr1_2:65767358-65767377 None:intergenic 65.0%
!! CCAGCGGTGCCATTCCACCA+GGG - chr1_2:65767359-65767378 None:intergenic 65.0%
! GAATGGCACCGCTGGCTGCA+GGG + chr1_2:65767364-65767383 Msa0085590:CDS 65.0%
GGGCTTCCTGGGTACCATCC+AGG + chr1_2:65767384-65767403 Msa0085590:CDS 65.0%
GCAACACCAGGCCGCATTCC+AGG - chr1_2:65767510-65767529 None:intergenic 65.0%
CCGGTCAATGCTGCCGTCGC+CGG - chr1_2:65764573-65764592 None:intergenic 70.0%
!! CCGGCGACGGCAGCATTGAC+CGG + chr1_2:65764570-65764589 Msa0085590:five_prime_UTR 70.0%
!! GCGACGGCAGCATTGACCGG+AGG + chr1_2:65764573-65764592 Msa0085590:five_prime_UTR 70.0%
CCCTGGTGGAATGGCACCGC+TGG + chr1_2:65767356-65767375 Msa0085590:CDS 70.0%
!! GCCAGCGGTGCCATTCCACC+AGG - chr1_2:65767360-65767379 None:intergenic 70.0%
! GGAATGGCACCGCTGGCTGC+AGG + chr1_2:65767363-65767382 Msa0085590:CDS 70.0%
CCAGGAAGCCCTGCAGCCAG+CGG - chr1_2:65767375-65767394 None:intergenic 70.0%
! CGCTGGCTGCAGGGCTTCCT+GGG + chr1_2:65767373-65767392 Msa0085590:CDS 70.0%
GGTGCCCCTGGATGGTACCC+AGG - chr1_2:65767393-65767412 None:intergenic 70.0%
!! GGGGCAAGTCTTGGTGCCCC+TGG - chr1_2:65767405-65767424 None:intergenic 70.0%
! CCGCTGGCTGCAGGGCTTCC+TGG + chr1_2:65767372-65767391 Msa0085590:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 65764541 65768860 65764541 ID=Msa0085590;Name=Msa0085590
chr1_2 mRNA 65764541 65768860 65764541 ID=Msa0085590-mRNA-1;Parent=Msa0085590;Name=Msa0085590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=290|1|0.85|1|1|1|7|309|536
chr1_2 exon 65764541 65764771 65764541 ID=Msa0085590-mRNA-1:exon:22210;Parent=Msa0085590-mRNA-1
chr1_2 exon 65765705 65766483 65765705 ID=Msa0085590-mRNA-1:exon:22211;Parent=Msa0085590-mRNA-1
chr1_2 exon 65766655 65766732 65766655 ID=Msa0085590-mRNA-1:exon:22212;Parent=Msa0085590-mRNA-1
chr1_2 exon 65766814 65766903 65766814 ID=Msa0085590-mRNA-1:exon:22213;Parent=Msa0085590-mRNA-1
chr1_2 exon 65767333 65767632 65767333 ID=Msa0085590-mRNA-1:exon:22214;Parent=Msa0085590-mRNA-1
chr1_2 exon 65767715 65767909 65767715 ID=Msa0085590-mRNA-1:exon:22215;Parent=Msa0085590-mRNA-1
chr1_2 exon 65768324 65768860 65768324 ID=Msa0085590-mRNA-1:exon:22216;Parent=Msa0085590-mRNA-1
chr1_2 five_prime_UTR 65764541 65764771 65764541 ID=Msa0085590-mRNA-1:five_prime_utr;Parent=Msa0085590-mRNA-1
chr1_2 five_prime_UTR 65765705 65765763 65765705 ID=Msa0085590-mRNA-1:five_prime_utr;Parent=Msa0085590-mRNA-1
chr1_2 CDS 65765764 65766483 65765764 ID=Msa0085590-mRNA-1:cds;Parent=Msa0085590-mRNA-1
chr1_2 CDS 65766655 65766732 65766655 ID=Msa0085590-mRNA-1:cds;Parent=Msa0085590-mRNA-1
chr1_2 CDS 65766814 65766903 65766814 ID=Msa0085590-mRNA-1:cds;Parent=Msa0085590-mRNA-1
chr1_2 CDS 65767333 65767632 65767333 ID=Msa0085590-mRNA-1:cds;Parent=Msa0085590-mRNA-1
chr1_2 CDS 65767715 65767909 65767715 ID=Msa0085590-mRNA-1:cds;Parent=Msa0085590-mRNA-1
chr1_2 CDS 65768324 65768551 65768324 ID=Msa0085590-mRNA-1:cds;Parent=Msa0085590-mRNA-1
chr1_2 three_prime_UTR 65768552 65768860 65768552 ID=Msa0085590-mRNA-1:three_prime_utr;Parent=Msa0085590-mRNA-1
Gene Sequence

>Msa0085590

ATGTTTTCTCAACGTGATCCAAGTGTTCGGAAAAGTGGATCGGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATCACAAGGCGTTGCATGACACTTTTGCTGCGTTTGGCCCTGTACTTTCTTGTAAGGTGGCTCTTGACAGTAATGGTCAGTCAAAAGGGTATGGCTTTGTTCAGTTTGACAATGAAGAAGCTGCAAAGAGTGCCATCAAACAGTTGGATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGGTTTTTTGTTCGCCACCAGGAAAGGGTTAGGACAAATGGATCGCCCAAGTTCACTAATGTGTATGTGAAAAATCTTTCTGAAGCATCAACTGATGAGGACTTGAAACAACTTTTTGGCCCCTTTGGCAAGATAACTAGTGCAACAGTCATGAAAGATGCAAATGGGAAATCTAGATGCTTCGGTTTTGTGAATTTTCAAAGTCCAGATTCAGCTGCAGCTGCAGTTGAGAAGTTAAATGGAACTGCTATCAATGATGACAAGGTTTTATTTGTGGGGAGAGCTCAGAGGAAAGCAGAAAGAGAGCATGAGTTGAAAGCCAAGTTCGAGCAGGAAAGAATTAGCAGATATGAGAAATTGCAAGGGGCTAATTTGTACCTGAAAAATCTTGATGACGATTTTAATGAAGAAAAGTTGAAAGATCTATTTTCTGAGTTTGGAACTGTAACATCTTGCAGGGTGATGTTGGATTCACATGGTCATAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCCGAGGAAGCAAATAAAGCGTTGAATGAAATGAATGGAAAGTTGGTGGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCTCAATTGCAGGCACATTTTGCTCAAATCCGTTCCCCTGGTGGAATGGCACCGCTGGCTGCAGGGCTTCCTGGGTACCATCCAGGGGCACCAAGACTTGCCCCTCAGCAGTTGTATTACGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAGATCTTGCCTGGAATGCGGCCTGGTGTTGCTCCGAATTTTGTTATGCCATATCAGCTCCAAAGACAGGGTCAAAACGGGCAACGGATAGGTGCTCGACGAAATGGAAACCTCCAACATGTGCAGCAGAATCAAATGTTGCATCGTAACTCCAACCAAGGGTATAGATATATGGCCAACAATCGAAATGGCATGGATCTAGCAGGTCCAATGTTGCCGATGACATTTGATGGTTCTGGAGTTTCTGCTGCTCCTATTGATAATCAGCGTCCAGGGTCTACATCACTTGCCTCTGCTTTAGCTTCTGCTACCCCAGACAATCAGCGCATGATGCTCGGTGAACATCTATATCCCCTTGTGGACCGTCTTACACCAAACCAACATACTGCAAAGGTGACAGGGATGTTGCTTGAAATGGACCAATCCGAAGTGATTCATCTTATTGAATCTCCCGATGCCCTAAAAATAAAGGTCTCTGAGGCATTGCAGGTCCTTCATGAAGCTGCATCGGGATCTGAAGTTGGTGATCAGCTTGGTTCATTGTCATTGAACGAATGA
Protein sequence

>Msa0085590

MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDSNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERVRTNGSPKFTNVYVKNLSEASTDEDLKQLFGPFGKITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAEREHELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRSPGGMAPLAAGLPGYHPGAPRLAPQQLYYGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQQNQMLHRNSNQGYRYMANNRNGMDLAGPMLPMTFDGSGVSAAPIDNQRPGSTSLASALASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSEALQVLHEAASGSEVGDQLGSLSLNE*