AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178140 MtrunA17_Chr1g0201151 96.440 646 16 1 1 639 1 646 0.0 1276
Msa0178140 MtrunA17_Chr6g0465751 64.107 638 205 8 1 632 1 620 0.0 790
Msa0178140 MtrunA17_Chr6g0466501 63.963 641 201 9 1 634 1 618 0.0 778
Msa0178140 MtrunA17_Chr6g0465631 66.858 522 163 4 104 625 1 512 0.0 697
Msa0178140 MtrunA17_Chr6g0466451 66.667 522 164 4 104 625 1 512 0.0 696
Msa0178140 MtrunA17_Chr4g0044541 59.150 612 225 13 27 623 31 632 0.0 687
Msa0178140 MtrunA17_Chr6g0465691 63.768 552 177 6 89 634 2 536 0.0 674
Msa0178140 MtrunA17_Chr6g0465691 34.386 285 168 5 30 299 31 311 3.21e-41 157
Msa0178140 MtrunA17_Chr0c09g0493511 63.406 552 183 6 89 634 2 540 0.0 669
Msa0178140 MtrunA17_Chr0c09g0493511 35.439 285 165 5 30 299 31 311 1.33e-44 167
Msa0178140 MtrunA17_Chr1g0153181 56.320 625 254 11 27 639 29 646 0.0 657
Msa0178140 MtrunA17_Chr3g0134141 56.447 636 244 12 13 639 7 618 0.0 634
Msa0178140 MtrunA17_Chr7g0265341 43.021 609 314 10 30 619 70 664 1.27e-146 441
Msa0178140 MtrunA17_Chr1g0179701 41.667 480 243 9 6 474 46 499 1.15e-113 352
Msa0178140 MtrunA17_Chr3g0110211 35.556 180 113 3 29 206 24 202 1.27e-30 124
Msa0178140 MtrunA17_Chr3g0110211 29.570 186 110 5 212 394 28 195 1.55e-16 82.0
Msa0178140 MtrunA17_Chr3g0110211 28.342 187 124 5 111 292 18 199 7.39e-16 79.7
Msa0178140 MtrunA17_Chr6g0465621 64.286 84 25 1 1 84 1 79 7.66e-28 107
Msa0178140 MtrunA17_Chr6g0466441 64.286 84 25 1 1 84 1 79 7.66e-28 107
Msa0178140 MtrunA17_Chr1g0153871 31.655 278 161 11 29 284 96 366 8.47e-27 113
Msa0178140 MtrunA17_Chr1g0153871 24.113 282 204 6 119 396 98 373 5.98e-23 102
Msa0178140 MtrunA17_Chr0c09g0493521 61.446 83 27 2 1 83 1 78 1.50e-26 103
Msa0178140 MtrunA17_Chr0c09g0493581 65.476 84 22 3 1 83 1 78 4.44e-26 102
Msa0178140 MtrunA17_Chr6g0465701 62.500 88 26 3 1 87 1 82 6.76e-26 102
Msa0178140 MtrunA17_Chr3g0133651 29.242 277 170 10 29 284 92 363 5.87e-25 107
Msa0178140 MtrunA17_Chr3g0133651 25.000 308 212 11 120 421 95 389 3.55e-20 93.6
Msa0178140 MtrunA17_Chr4g0074711 28.881 277 170 9 31 285 75 346 2.84e-24 105
Msa0178140 MtrunA17_Chr4g0074711 23.509 285 204 9 120 397 76 353 2.33e-17 84.7
Msa0178140 MtrunA17_Chr2g0288251 28.223 287 178 11 31 294 61 342 1.71e-23 103
Msa0178140 MtrunA17_Chr2g0288251 23.077 286 205 9 120 397 62 340 2.20e-16 81.6
Msa0178140 MtrunA17_Chr6g0465741 74.576 59 15 0 565 623 40 98 2.34e-22 92.4
Msa0178140 MtrunA17_Chr6g0466541 38.650 163 64 5 243 405 2 128 7.33e-22 91.7
Msa0178140 MtrunA17_Chr6g0466541 37.584 149 69 4 151 299 1 125 5.73e-21 89.4
Msa0178140 MtrunA17_Chr6g0466551 60.000 80 32 0 560 639 34 113 8.57e-22 91.7
Msa0178140 MtrunA17_Chr2g0328791 26.599 297 172 10 31 286 16 307 4.52e-20 93.2
Msa0178140 MtrunA17_Chr8g0344491 26.117 291 167 9 26 280 58 336 2.53e-19 90.9
Msa0178140 MtrunA17_Chr8g0344491 27.063 303 177 10 109 382 57 344 1.11e-17 85.9
Msa0178140 MtrunA17_Chr3g0139111 25.993 277 164 9 31 274 61 329 4.04e-19 90.5
Msa0178140 MtrunA17_Chr3g0139111 25.685 292 190 6 110 383 52 334 4.11e-18 87.4
Msa0178140 MtrunA17_Chr4g0045221 27.609 297 166 11 31 285 117 406 6.77e-19 90.1
Msa0178140 MtrunA17_Chr4g0045221 28.141 199 123 7 198 392 113 295 1.47e-12 70.1
Msa0178140 MtrunA17_Chr4g0070231 25.083 303 178 9 8 270 17 310 1.76e-18 88.2
Msa0178140 MtrunA17_Chr4g0070231 24.832 298 184 7 110 383 38 319 9.79e-17 82.8
Msa0178140 MtrunA17_Chr4g0026301 25.591 254 173 6 20 267 100 343 1.41e-15 80.1
Msa0178140 MtrunA17_Chr3g0116631 31.771 192 119 5 206 394 106 288 2.10e-15 77.4
Msa0178140 MtrunA17_Chr3g0116631 26.519 181 111 4 26 190 105 279 3.02e-11 64.7
Msa0178140 MtrunA17_Chr1g0177101 29.012 162 103 2 32 181 110 271 4.98e-15 76.6
Msa0178140 MtrunA17_Chr1g0177101 28.649 185 114 5 211 388 110 283 1.22e-11 66.2
Msa0178140 MtrunA17_Chr1g0177101 28.235 170 107 6 117 274 107 273 4.06e-11 64.7
Msa0178140 MtrunA17_Chr7g0267571 25.854 205 131 4 32 220 111 310 4.63e-14 73.6
Msa0178140 MtrunA17_Chr7g0276201 23.273 275 197 5 22 291 96 361 7.93e-14 74.3
Msa0178140 MtrunA17_Chr3g0101061 25.490 255 132 11 211 423 42 280 1.78e-13 73.2
Msa0178140 MtrunA17_Chr3g0101061 28.324 173 106 6 118 274 40 210 9.71e-11 64.7
Msa0178140 MtrunA17_Chr7g0217261 23.636 275 197 5 20 290 339 604 2.53e-13 73.2
Msa0178140 MtrunA17_Chr1g0181111 29.412 187 107 4 29 190 83 269 3.65e-13 70.5
Msa0178140 MtrunA17_Chr1g0181111 29.208 202 114 5 120 299 86 280 1.05e-12 68.9
Msa0178140 MtrunA17_Chr7g0259641 31.304 230 136 12 102 318 571 791 7.12e-13 72.0
Msa0178140 MtrunA17_Chr7g0259641 28.936 235 144 10 181 402 553 777 7.81e-12 68.6
Msa0178140 MtrunA17_Chr5g0411091 34.595 185 108 7 210 391 97 271 7.23e-13 70.1
Msa0178140 MtrunA17_Chr4g0058151 30.645 186 116 5 211 394 124 298 1.55e-12 68.9
Msa0178140 MtrunA17_Chr4g0031091 37.805 82 50 1 112 192 27 108 3.64e-12 63.5
Msa0178140 MtrunA17_Chr8g0335981 22.711 273 186 8 32 291 217 477 3.80e-12 69.7
Msa0178140 MtrunA17_Chr7g0268551 27.011 348 203 15 209 549 16 319 4.85e-12 68.6
Msa0178140 MtrunA17_Chr1g0211191 31.333 150 85 3 42 174 82 230 1.83e-11 66.6
Msa0178140 MtrunA17_Chr2g0290191 27.717 184 104 8 211 378 6 176 1.99e-11 66.6
Msa0178140 MtrunA17_Chr3g0087481 31.217 189 119 6 193 378 45 225 3.11e-11 63.9
Msa0178140 MtrunA17_Chr4g0068631 25.128 195 124 6 208 396 87 265 3.79e-11 66.2
Msa0178140 MtrunA17_Chr8g0360551 27.801 241 151 7 148 381 10 234 6.66e-11 65.1
Msa0178140 MtrunA17_Chr3g0119311 37.838 74 45 1 120 192 38 111 9.20e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178140 AT1G71770.1 57.532 624 242 13 29 633 58 677 0.0 692
Msa0178140 AT1G71770.2 57.532 624 242 13 29 633 58 677 0.0 692
Msa0178140 AT1G22760.1 57.369 631 236 13 4 619 31 643 0.0 680
Msa0178140 AT4G34110.1 55.000 640 258 14 10 638 9 629 0.0 646
Msa0178140 AT1G49760.1 54.976 633 254 15 29 639 44 667 0.0 626
Msa0178140 AT1G49760.2 54.976 633 254 15 29 639 44 667 0.0 626
Msa0178140 AT2G23350.1 53.407 631 257 15 30 639 46 660 0.0 615
Msa0178140 AT2G36660.1 38.963 598 331 9 28 624 22 586 9.92e-125 382
Msa0178140 AT1G34140.1 49.515 412 173 8 89 473 2 405 4.87e-119 360
Msa0178140 AT1G34140.1 31.802 283 177 4 31 299 32 312 6.28e-37 143
Msa0178140 AT3G16380.1 45.600 375 198 4 31 402 22 393 1.73e-101 320
Msa0178140 AT3G16380.1 34.138 290 169 6 118 403 21 292 8.46e-40 154
Msa0178140 AT3G16380.1 34.197 193 111 4 205 396 17 194 2.02e-22 102
Msa0178140 AT3G16380.1 33.508 191 105 4 29 201 201 387 1.49e-21 99.4
Msa0178140 AT2G18510.1 33.889 180 116 3 29 206 24 202 3.95e-29 119
Msa0178140 AT2G18510.1 27.273 187 115 5 211 394 27 195 8.23e-15 77.0
Msa0178140 AT1G47500.1 31.673 281 162 11 29 284 102 377 5.76e-27 114
Msa0178140 AT1G47500.1 26.071 280 174 12 120 381 105 369 1.33e-19 92.4
Msa0178140 AT3G19130.1 31.544 298 160 12 31 291 109 399 2.87e-26 112
Msa0178140 AT3G19130.1 27.667 300 170 13 116 383 102 386 1.63e-19 92.0
Msa0178140 AT1G47490.1 31.673 281 162 11 29 284 100 375 8.82e-26 110
Msa0178140 AT1G47490.1 26.740 273 181 12 120 381 103 367 1.95e-21 97.8
Msa0178140 AT1G49600.1 29.448 326 186 12 31 324 120 433 1.01e-23 105
Msa0178140 AT1G49600.1 27.622 286 171 11 120 383 121 392 1.20e-19 92.8
Msa0178140 AT1G49600.3 30.847 295 165 11 31 293 120 407 1.14e-23 105
Msa0178140 AT1G49600.3 26.959 319 189 13 114 405 110 411 2.35e-20 94.7
Msa0178140 AT1G49600.2 30.847 295 165 11 31 293 120 407 1.14e-23 105
Msa0178140 AT1G49600.2 26.959 319 189 13 114 405 110 411 2.35e-20 94.7
Msa0178140 AT5G54900.1 27.500 280 176 9 31 288 61 335 1.17e-23 103
Msa0178140 AT5G54900.1 23.826 298 193 11 119 399 61 341 1.20e-15 79.7
Msa0178140 AT1G54080.1 27.273 308 168 11 7 270 32 327 3.34e-23 103
Msa0178140 AT1G54080.1 27.875 287 173 9 109 376 58 329 7.20e-19 90.1
Msa0178140 AT1G54080.1 28.571 175 105 5 210 383 64 219 1.98e-12 70.1
Msa0178140 AT1G11650.2 26.557 305 197 10 2 285 35 333 2.05e-22 100
Msa0178140 AT1G11650.2 23.381 278 199 7 110 379 51 322 3.29e-15 78.6
Msa0178140 AT4G27000.1 27.636 275 174 10 31 285 81 350 3.61e-22 100
Msa0178140 AT4G27000.1 23.973 292 194 11 119 397 81 357 5.36e-14 75.1
Msa0178140 AT1G54080.2 27.244 312 167 12 7 270 32 331 8.30e-22 99.0
Msa0178140 AT1G54080.2 27.835 291 172 10 109 376 58 333 1.77e-17 85.9
Msa0178140 AT1G11650.1 26.182 275 177 9 2 256 35 303 2.68e-20 92.4
Msa0178140 AT3G14100.1 25.267 281 162 8 26 270 55 323 2.99e-19 91.3
Msa0178140 AT3G14100.1 27.758 281 169 8 109 370 54 319 8.67e-17 83.6
Msa0178140 AT3G14100.1 27.473 182 112 5 210 390 60 222 3.26e-12 69.3
Msa0178140 AT5G19350.2 24.731 279 175 7 31 279 25 298 7.72e-19 89.7
Msa0178140 AT5G19350.1 25.088 283 173 7 31 279 25 302 1.46e-18 89.0
Msa0178140 AT1G17370.2 27.491 291 178 10 109 381 49 324 1.35e-16 82.8
Msa0178140 AT1G17370.2 25.540 278 162 9 26 270 50 315 4.61e-16 81.3
Msa0178140 AT1G17370.1 26.871 294 179 10 109 381 49 327 2.87e-16 82.0
Msa0178140 AT1G17370.1 25.623 281 161 9 26 270 50 318 5.42e-16 81.3
Msa0178140 AT1G47500.2 30.058 173 111 6 29 191 102 274 4.81e-16 80.1
Msa0178140 AT4G00830.2 25.912 274 188 6 26 294 112 375 1.21e-15 80.5
Msa0178140 AT4G00830.2 24.372 398 246 13 120 494 118 483 1.14e-14 77.4
Msa0178140 AT4G00830.1 25.912 274 188 6 26 294 112 375 1.21e-15 80.5
Msa0178140 AT4G00830.1 24.372 398 246 13 120 494 118 483 1.14e-14 77.4
Msa0178140 AT4G00830.6 25.912 274 188 6 26 294 112 375 1.21e-15 80.5
Msa0178140 AT4G00830.6 24.372 398 246 13 120 494 118 483 1.14e-14 77.4
Msa0178140 AT2G37220.1 27.419 186 107 3 32 190 93 277 2.16e-15 77.8
Msa0178140 AT4G00830.3 25.830 271 184 6 26 294 112 367 3.01e-15 79.3
Msa0178140 AT4G00830.3 24.874 398 236 14 120 494 118 475 4.23e-14 75.5
Msa0178140 AT4G00830.5 25.830 271 184 6 26 294 112 367 3.01e-15 79.3
Msa0178140 AT4G00830.5 24.874 398 236 14 120 494 118 475 4.23e-14 75.5
Msa0178140 AT1G47490.2 30.058 173 111 6 29 191 100 272 3.37e-15 77.4
Msa0178140 AT4G24770.1 32.979 188 111 6 211 395 152 327 1.36e-14 75.9
Msa0178140 AT4G24770.1 28.324 173 115 3 26 190 146 317 3.40e-12 68.6
Msa0178140 AT4G24770.2 32.979 188 111 6 211 395 152 327 1.36e-14 75.9
Msa0178140 AT4G24770.2 28.324 173 115 3 26 190 146 317 3.40e-12 68.6
Msa0178140 AT1G01080.1 29.843 191 118 6 104 280 95 283 2.87e-14 74.3
Msa0178140 AT1G01080.3 30.978 184 111 6 104 273 95 276 6.51e-14 73.2
Msa0178140 AT1G01080.2 29.688 192 118 6 104 280 95 284 1.02e-13 72.8
Msa0178140 AT4G00830.4 24.311 399 245 14 120 494 118 483 1.06e-13 74.3
Msa0178140 AT4G00830.4 24.818 274 191 6 26 294 112 375 2.41e-12 70.1
Msa0178140 AT2G35410.1 27.419 186 120 4 211 390 97 273 2.64e-13 71.6
Msa0178140 AT2G44710.2 22.677 269 183 8 32 287 216 472 3.12e-13 73.6
Msa0178140 AT2G44710.1 22.677 269 183 8 32 287 216 472 3.12e-13 73.6
Msa0178140 AT2G44710.4 22.677 269 183 8 32 287 131 387 3.32e-13 73.6
Msa0178140 AT3G52380.1 24.000 175 109 3 32 186 118 288 4.47e-13 71.2
Msa0178140 AT3G52380.1 30.052 193 108 8 118 292 116 299 1.33e-11 66.6
Msa0178140 AT3G52380.1 29.032 186 126 5 211 393 118 300 5.74e-11 64.7
Msa0178140 AT3G52150.2 31.319 182 95 6 211 378 78 243 5.85e-13 69.7
Msa0178140 AT3G52150.2 25.434 173 115 3 32 190 78 250 7.51e-11 63.5
Msa0178140 AT3G52150.1 31.319 182 95 6 211 378 78 243 5.85e-13 69.7
Msa0178140 AT3G52150.1 25.434 173 115 3 32 190 78 250 7.51e-11 63.5
Msa0178140 AT5G50250.1 30.890 191 119 6 206 394 110 289 5.99e-13 70.5
Msa0178140 AT5G50250.1 28.333 180 117 4 30 201 113 288 1.22e-12 69.3
Msa0178140 AT5G55550.5 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0178140 AT5G55550.4 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0178140 AT5G55550.9 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0178140 AT5G55550.7 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0178140 AT5G55550.1 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0178140 AT5G55550.2 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0178140 AT5G55550.3 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0178140 AT5G55550.6 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0178140 AT5G55550.11 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0178140 AT3G52660.3 22.177 248 179 4 26 267 88 327 3.66e-12 69.3
Msa0178140 AT3G52660.1 22.177 248 179 4 26 267 88 327 3.66e-12 69.3
Msa0178140 AT3G52660.2 22.177 248 179 4 26 267 88 327 3.66e-12 69.3
Msa0178140 AT5G47620.1 27.624 181 106 8 211 378 8 176 3.71e-12 69.3
Msa0178140 AT5G47620.2 27.624 181 106 8 211 378 8 176 3.71e-12 69.3
Msa0178140 AT5G47620.5 27.624 181 106 8 211 378 8 176 3.71e-12 69.3
Msa0178140 AT4G26650.2 25.405 185 112 6 211 378 14 189 5.35e-12 68.9
Msa0178140 AT1G60000.1 25.698 179 126 3 18 190 73 250 5.45e-12 67.0
Msa0178140 AT4G26650.1 25.405 185 112 6 211 378 17 192 6.01e-12 68.6
Msa0178140 AT3G19350.1 48.485 66 33 1 554 619 23 87 6.99e-12 62.8
Msa0178140 AT5G47620.4 26.702 191 117 7 211 378 8 198 7.37e-12 68.6
Msa0178140 AT1G45100.1 27.684 177 111 3 196 370 143 304 9.01e-12 68.2
Msa0178140 AT1G17640.2 25.683 183 120 4 211 391 68 236 1.55e-11 67.0
Msa0178140 AT1G17640.1 25.683 183 120 4 211 391 68 236 1.55e-11 67.0
Msa0178140 AT1G17640.3 25.683 183 120 4 211 391 68 236 1.55e-11 67.0
Msa0178140 AT5G41690.1 26.943 193 126 4 211 389 70 261 1.67e-11 67.8
Msa0178140 AT5G41690.3 26.943 193 126 4 211 389 70 261 1.67e-11 67.8
Msa0178140 AT5G41690.2 26.943 193 126 4 211 389 70 261 1.67e-11 67.8
Msa0178140 AT4G19610.1 30.636 173 109 5 109 272 595 765 1.74e-11 67.8
Msa0178140 AT4G13850.3 41.333 75 43 1 117 190 34 108 1.83e-11 62.8
Msa0178140 AT3G46020.1 34.737 95 61 1 313 406 7 101 1.89e-11 61.6
Msa0178140 AT4G13850.2 41.333 75 43 1 117 190 34 108 2.24e-11 62.8
Msa0178140 AT4G13850.1 41.333 75 43 1 117 190 34 108 2.50e-11 62.8
Msa0178140 AT4G36960.1 29.940 167 104 6 119 278 4 164 2.65e-11 66.2
Msa0178140 AT4G36960.2 29.940 167 104 6 119 278 4 164 2.65e-11 66.2
Msa0178140 AT5G03580.1 39.241 79 47 1 207 285 15 92 6.29e-11 60.1

Find 197 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAAGCTATTATTATTT+TGG 0.118284 1_4:+65510833 Msa0178140:three_prime_UTR
CCGCTGGCTGCAGGGCTTCC+TGG 0.125743 1_4:+65509591 Msa0178140:CDS
CCCTGTCTTTGGAGCTGATA+TGG 0.234302 1_4:-65509765 None:intergenic
CTCCAAAGACAGGGTCAAAA+TGG 0.262200 1_4:+65509774 Msa0178140:CDS
CATACCATGCGCTGATTGTC+TGG 0.263859 1_4:-65510110 None:intergenic
CATTTGTCCTAACCCTTTCC+TGG 0.268295 1_4:-65508261 None:intergenic
CCACCTCAGCCTGCTGGATT+TGG 0.272099 1_4:+65509684 Msa0178140:CDS
CGCTCAGGTTGTTTCAATTA+GGG 0.273509 1_4:+65506848 Msa0178140:CDS
TCGCTCAGGTTGTTTCAATT+AGG 0.283695 1_4:+65506847 Msa0178140:CDS
CGCTGGCTGCAGGGCTTCCT+GGG 0.283699 1_4:+65509592 Msa0178140:CDS
CCGATGACATTTGATGGTTC+TGG 0.284750 1_4:+65510014 Msa0178140:CDS
CACATACACATTAGTGAACT+TGG 0.296288 1_4:-65508290 None:intergenic
GGGCTTCCTGGGTACCATCC+AGG 0.299327 1_4:+65509603 Msa0178140:CDS
ATCCATGCCATTTCGATTGT+TGG 0.315102 1_4:-65509973 None:intergenic
ACTGCAGCAGCAGCTGAATC+TGG 0.336443 1_4:-65508448 None:intergenic
GGAATGGCACCGCTGGCTGC+AGG 0.341384 1_4:+65509582 Msa0178140:CDS
TACCGCTTTATTTGCTTCCT+CGG 0.346237 1_4:-65508932 None:intergenic
TTGGAACTGTAACATCTTGC+AGG 0.347871 1_4:+65508680 Msa0178140:CDS
CAGCCCACCAATAACTTATC+TGG 0.350131 1_4:-65510900 None:intergenic
CATGGTCACAGCAAGGGTTC+TGG 0.350389 1_4:+65508889 Msa0178140:CDS
CCCTGGTGGAATGGCACCGC+TGG 0.351683 1_4:+65509575 Msa0178140:CDS
CAACCAAGGGTATAGATATA+TGG 0.354482 1_4:+65509950 Msa0178140:CDS
AATGGGAAATCTAGATGCTT+TGG 0.369454 1_4:+65508406 Msa0178140:CDS
AAAGGTCTCTGAGGCATTGC+AGG 0.369465 1_4:+65510679 Msa0178140:CDS
GCTGCAGTTGAGAAGTTAAA+TGG 0.370195 1_4:+65508463 Msa0178140:CDS
ACCTTTGCAGTATGTTGGTT+TGG 0.374003 1_4:-65510584 None:intergenic
CATGCCATCCAACTGTTTGA+TGG 0.376643 1_4:-65508194 None:intergenic
GCCCCTCAGCAGTTGTATTA+CGG 0.376872 1_4:+65509639 Msa0178140:CDS
AGAGAGGAAGGCTCAGTTGC+AGG 0.377439 1_4:+65509101 Msa0178140:CDS
TGAGAAAACATGATACGAAT+AGG 0.384527 1_4:-65507971 None:intergenic
TGGCCCTGTACTTTCTTGTA+AGG 0.384907 1_4:+65508096 Msa0178140:CDS
CGGATAGGTGCTCGACGAAA+TGG 0.388336 1_4:+65509801 Msa0178140:CDS
ATGTTGCCGATGACATTTGA+TGG 0.389353 1_4:+65510008 Msa0178140:CDS
TAGACCTGAATGATATGAAC+TGG 0.391809 1_4:+65511056 Msa0178140:three_prime_UTR
GGCTTCCTGGGTACCATCCA+GGG 0.399660 1_4:+65509604 Msa0178140:CDS
GACAGTAATGGTCAGTCAAA+AGG 0.400879 1_4:+65508127 Msa0178140:CDS
GGGGCAAGTCTTGGTGCCCC+TGG 0.404417 1_4:-65509621 None:intergenic
GCAACACCAGGCCGCATTCC+AGG 0.405751 1_4:-65509726 None:intergenic
AAGCCCAGTTCATATCATTC+AGG 0.407397 1_4:-65511060 None:intergenic
TTCCAGCAGCAGATCTTGCC+TGG 0.414251 1_4:+65509708 Msa0178140:CDS
AGAGATTCAAGGACATGTTT+TGG 0.414309 1_4:+65510929 Msa0178140:three_prime_UTR
CAGGAAAGGGTTAGGACAAA+TGG 0.422143 1_4:+65508262 Msa0178140:CDS
CCGGTCAATGCTGCCGTCGC+CGG 0.426455 1_4:-65506738 None:intergenic
ATGATAAACAAGTCTATGTT+GGG 0.427846 1_4:+65508224 Msa0178140:CDS
CTCAACGTGATCCAAGTGTT+CGG 0.429454 1_4:+65507990 Msa0178140:CDS
CTCAACTTCACTCCTCTGAA+TGG 0.432562 1_4:+65507944 Msa0178140:CDS
TGATATGGCATAACAAAATT+CGG 0.436617 1_4:-65509750 None:intergenic
GATTCTGCTGCACATGTTGG+AGG 0.441316 1_4:-65509827 None:intergenic
TTCGCCACCAGGAAAGGGTT+AGG 0.441421 1_4:+65508254 Msa0178140:CDS
AAAGCCTTTGTTTGTTGCTG+TGG 0.442545 1_4:+65509065 Msa0178140:CDS
TGGCCATATATCTATACCCT+TGG 0.446363 1_4:-65509953 None:intergenic
ATCTTGCCTGGAATGCGGCC+TGG 0.447751 1_4:+65509720 Msa0178140:CDS
GTTGCATTATTAGGTGATGT+TGG 0.448677 1_4:+65508861 Msa0178140:intron
GCCATATCAGCTCCAAAGAC+AGG 0.451036 1_4:+65509764 Msa0178140:CDS
AATTCTTTCCTGCTCGAACT+TGG 0.452537 1_4:-65508563 None:intergenic
CAAGTCTTGGTGCCCCTGGA+TGG 0.453330 1_4:-65509617 None:intergenic
CAGCAAGGGTTCTGGTTTCG+TGG 0.453878 1_4:+65508897 Msa0178140:CDS
TGCTTCCTCGGGAGTAGAAA+AGG 0.455695 1_4:-65508920 None:intergenic
ACAGTCATGAAAGATGCAAA+TGG 0.458938 1_4:+65508388 Msa0178140:CDS
CCCTGTACTTTCTTGTAAGG+TGG 0.459223 1_4:+65508099 Msa0178140:CDS
TTGTTTCAATTAGGGTCTGT+AGG 0.459272 1_4:+65506856 Msa0178140:CDS
GTCTCCGAATGTGGTGGCTC+CGG 0.462851 1_4:+65506719 Msa0178140:CDS
GACAGGGATGTTGCTTGAAA+TGG 0.465292 1_4:+65510607 Msa0178140:CDS
AATGATAAACAAGTCTATGT+TGG 0.465684 1_4:+65508223 Msa0178140:CDS
CCTGGACGCTGATTATCAAT+AGG 0.467031 1_4:-65510050 None:intergenic
TTCATACCACCTCAGCCTGC+TGG 0.468479 1_4:+65509678 Msa0178140:CDS
CGCATTCACGAACGGTCCTC+CGG 0.469198 1_4:-65506757 None:intergenic
GTCGCCGGAGCCACCACATT+CGG 0.473001 1_4:-65506723 None:intergenic
CCGGCGACGGCAGCATTGAC+CGG 0.477791 1_4:+65506738 Msa0178140:CDS
GTCCTTCATGAAGCTGCATC+GGG 0.478100 1_4:+65510701 Msa0178140:CDS
ACCGCTTTATTTGCTTCCTC+GGG 0.479649 1_4:-65508931 None:intergenic
GCCAGCGGTGCCATTCCACC+AGG 0.481094 1_4:-65509576 None:intergenic
CTGTCACCTTTGCAGTATGT+TGG 0.481467 1_4:-65510589 None:intergenic
TCAACTTCACTCCTCTGAAT+GGG 0.482554 1_4:+65507945 Msa0178140:CDS
GAATGTGGTGGCTCCGGCGA+CGG 0.484230 1_4:+65506725 Msa0178140:CDS
AACTGCTGAGGGGCAAGTCT+TGG 0.488367 1_4:-65509630 None:intergenic
TATATGGCCAACAATCGAAA+TGG 0.488751 1_4:+65509966 Msa0178140:CDS
TTCCAGGCAAGATCTGCTGC+TGG 0.488761 1_4:-65509710 None:intergenic
GCACTAGTTATCTTGCCAAA+GGG 0.490127 1_4:-65508364 None:intergenic
GTTGAGAAGTTCCTTTGCAT+TGG 0.492750 1_4:-65507927 None:intergenic
CAACATACTGCAAAGGTGAC+AGG 0.494098 1_4:+65510590 Msa0178140:CDS
GAATGGCACCGCTGGCTGCA+GGG 0.495319 1_4:+65509583 Msa0178140:CDS
TCCAAAGACAGGGTCAAAAT+GGG 0.497020 1_4:+65509775 Msa0178140:CDS
CAGACTAGGCGATCCTCTCT+TGG 0.498348 1_4:+65506882 Msa0178140:CDS
TGTTTCAATTAGGGTCTGTA+GGG 0.499273 1_4:+65506857 Msa0178140:CDS
CAATGTGTTCATTAAGAACC+TGG 0.502190 1_4:+65508027 Msa0178140:CDS
CCTATTGATAATCAGCGTCC+AGG 0.504071 1_4:+65510050 Msa0178140:CDS
AATCCGTTCCCCTGGTGGAA+TGG 0.506540 1_4:+65509566 Msa0178140:CDS
TGTGATCAATTGATGTGTCC+AGG 0.506638 1_4:-65508045 None:intergenic
GATCCAAGTGTTCGGAAAAG+TGG 0.507647 1_4:+65507998 Msa0178140:CDS
TCTGTTTAGCCAAGTCGCTC+AGG 0.509218 1_4:+65506833 Msa0178140:CDS
CTTGATTCTGCTGCACATGT+TGG 0.509410 1_4:-65509830 None:intergenic
GTCCAGTTGAATGAAATGAA+TGG 0.510076 1_4:+65509027 Msa0178140:intron
TTTGCTCAAATCCGTTCCCC+TGG 0.511063 1_4:+65509558 Msa0178140:CDS
AGTGTTCGGAAAAGTGGATC+GGG 0.517337 1_4:+65508004 Msa0178140:CDS
ATACCATGCGCTGATTGTCT+GGG 0.517628 1_4:-65510109 None:intergenic
GGTCCTTCATGAAGCTGCAT+CGG 0.518569 1_4:+65510700 Msa0178140:CDS
ACAGTAATGGTCAGTCAAAA+GGG 0.518664 1_4:+65508128 Msa0178140:CDS
TCAAATGTCATCGGCAACAT+TGG 0.519004 1_4:-65510005 None:intergenic
AACAGATATGAGAAATTGCA+AGG 0.520125 1_4:+65508586 Msa0178140:CDS
GGCTGAGGTGGTATGAAGCC+AGG 0.520624 1_4:-65509672 None:intergenic
TTTACGTTGGCGATCTCGAA+GGG 0.520934 1_4:+65506784 Msa0178140:CDS
TGTCAACTTCACCAATGCTC+AGG 0.521040 1_4:+65506914 Msa0178140:CDS
CATATATCTATACCCTTGGT+TGG 0.521460 1_4:-65509949 None:intergenic
TCTGAAGTTGGTGATCAGCT+TGG 0.524358 1_4:+65510725 Msa0178140:CDS
GAATGAAATGAATGGAAAGT+TGG 0.530915 1_4:+65509035 Msa0178140:CDS
GTGCCATTCCACCAGGGGAA+CGG 0.531086 1_4:-65509569 None:intergenic
GCCACCTTACAAGAAAGTAC+AGG 0.531089 1_4:-65508100 None:intergenic
TGCACTAGTTATCTTGCCAA+AGG 0.533023 1_4:-65508365 None:intergenic
CAGTCATGAAAGATGCAAAT+GGG 0.535240 1_4:+65508389 Msa0178140:CDS
CTTTACGTTGGCGATCTCGA+AGG 0.535531 1_4:+65506783 Msa0178140:CDS
CCAAATCCAGCAGGCTGAGG+TGG 0.536975 1_4:-65509684 None:intergenic
GGCTGATATGTAGAGATTCA+AGG 0.536980 1_4:+65510918 Msa0178140:three_prime_UTR
TTGCCAGATAAGTTATTGGT+GGG 0.540316 1_4:+65510897 Msa0178140:three_prime_UTR
TGCTGGAAACCAAATCCAGC+AGG 0.541904 1_4:-65509693 None:intergenic
TATTACGGTCAAGGCACACC+TGG 0.547147 1_4:+65509654 Msa0178140:CDS
TTTGCCAGATAAGTTATTGG+TGG 0.549894 1_4:+65510896 Msa0178140:three_prime_UTR
GGTGCCCCTGGATGGTACCC+AGG 0.551085 1_4:-65509609 None:intergenic
AATGGTCAGTCAAAAGGGTA+TGG 0.555474 1_4:+65508133 Msa0178140:CDS
TTGAAACAACCTGAGCGACT+TGG 0.559301 1_4:-65506842 None:intergenic
CGAATAGGTTTCCCATTCAG+AGG 0.559642 1_4:-65507956 None:intergenic
GCTTCCTGGGTACCATCCAG+GGG 0.561102 1_4:+65509605 Msa0178140:CDS
ACATACACATTAGTGAACTT+GGG 0.561743 1_4:-65508289 None:intergenic
ACAAAATTCGGAGCAACACC+AGG 0.561825 1_4:-65509738 None:intergenic
CCAGGAAGCCCTGCAGCCAG+CGG 0.562572 1_4:-65509591 None:intergenic
GCTCAAATCCGTTCCCCTGG+TGG 0.562712 1_4:+65509561 Msa0178140:CDS
CGAAATGGCATGGATCTAGC+AGG 0.564881 1_4:+65509981 Msa0178140:CDS
GGTCAAAATGGGCAACGGAT+AGG 0.565521 1_4:+65509786 Msa0178140:CDS
AATTGAAATTATCAGATGCT+CGG 0.569025 1_4:+65510527 Msa0178140:intron
TAAGATGAATCACTTCGGAT+TGG 0.570286 1_4:-65510631 None:intergenic
GGCCAACAATCGAAATGGCA+TGG 0.570608 1_4:+65509971 Msa0178140:CDS
TTCAATAAGATGAATCACTT+CGG 0.573383 1_4:-65510636 None:intergenic
AAACTCACCATCCTGAGCAT+TGG 0.573445 1_4:-65506925 None:intergenic
TTGCATCGTAACTCCAACCA+AGG 0.573794 1_4:+65509936 Msa0178140:CDS
GACCGTAATACAACTGCTGA+GGG 0.575479 1_4:-65509641 None:intergenic
ATCCCGATGCAGCTTCATGA+AGG 0.575668 1_4:-65510703 None:intergenic
GAGGCAAGTGATGTAGACCC+TGG 0.581109 1_4:-65510068 None:intergenic
GATTCACATGGTCACAGCAA+GGG 0.581180 1_4:+65508883 Msa0178140:CDS
AAGTGTTCGGAAAAGTGGAT+CGG 0.582522 1_4:+65508003 Msa0178140:CDS
GGATTCACATGGTCACAGCA+AGG 0.582683 1_4:+65508882 Msa0178140:CDS
CAGCAGTTGTATTACGGTCA+AGG 0.584506 1_4:+65509645 Msa0178140:CDS
GGCTGCGATTTCATCACCGA+TGG 0.587268 1_4:+65506692 Msa0178140:CDS
TGGAACTGTAACATCTTGCA+GGG 0.587771 1_4:+65508681 Msa0178140:CDS
AAACCAAATCCAGCAGGCTG+AGG 0.590059 1_4:-65509687 None:intergenic
TGAAGTAATTTCAGCTGCAG+TGG 0.592647 1_4:+65510767 Msa0178140:exon
GACATAAGCGTAACCAAGAG+AGG 0.592663 1_4:-65506895 None:intergenic
CCAGAACCATCAAATGTCAT+CGG 0.594053 1_4:-65510014 None:intergenic
CCATATCAGCTCCAAAGACA+GGG 0.596118 1_4:+65509765 Msa0178140:CDS
AACATACTGCAAAGGTGACA+GGG 0.597579 1_4:+65510591 Msa0178140:CDS
GTTGAAAGCCAAGTTCGAGC+AGG 0.598139 1_4:+65508555 Msa0178140:CDS
CTATTGATAATCAGCGTCCA+GGG 0.600399 1_4:+65510051 Msa0178140:CDS
CACTAGTTATCTTGCCAAAG+GGG 0.600793 1_4:-65508363 None:intergenic
GCTGCATCGGGATCTGAAGT+TGG 0.602004 1_4:+65510713 Msa0178140:CDS
TTCTGAAGCATCAACTGATG+AGG 0.602081 1_4:+65508321 Msa0178140:CDS
TCAGCGCAAAGAAGAGAGGA+AGG 0.604652 1_4:+65509089 Msa0178140:CDS
AAAGAGTGCCATCAAACAGT+TGG 0.606237 1_4:+65508186 Msa0178140:CDS
AGCAGATCTTGCCTGGAATG+CGG 0.606792 1_4:+65509715 Msa0178140:CDS
GACAGGGTCAAAATGGGCAA+CGG 0.607936 1_4:+65509781 Msa0178140:CDS
GATGGTTCAGTCTCCGAATG+TGG 0.608912 1_4:+65506710 Msa0178140:CDS
TAAAGTGACGCATTCACGAA+CGG 0.610365 1_4:-65506765 None:intergenic
AGACCTGAATGATATGAACT+GGG 0.611208 1_4:+65511057 Msa0178140:three_prime_UTR
CAGCGGTGCCATTCCACCAG+GGG 0.613136 1_4:-65509574 None:intergenic
CCACCTTACAAGAAAGTACA+GGG 0.613727 1_4:-65508099 None:intergenic
AACTTCACCAATGCTCAGGA+TGG 0.614190 1_4:+65506918 Msa0178140:CDS
GTGAATGCGTCACTTTACGT+TGG 0.616829 1_4:+65506771 Msa0178140:CDS
TGAAATGAATGGAAAGTTGG+TGG 0.617759 1_4:+65509038 Msa0178140:CDS
TTGGTGTAAGACAGTCCACA+AGG 0.620718 1_4:-65510565 None:intergenic
TGAGCCACAGCAACAAACAA+AGG 0.620998 1_4:-65509069 None:intergenic
GGTTCAGTCTCCGAATGTGG+TGG 0.623008 1_4:+65506713 Msa0178140:CDS
AGTGCCATCAAACAGTTGGA+TGG 0.623280 1_4:+65508190 Msa0178140:CDS
ACAGATATGAGAAATTGCAA+GGG 0.623843 1_4:+65508587 Msa0178140:CDS
TGGCTCAGCGCAAAGAAGAG+AGG 0.624005 1_4:+65509085 Msa0178140:CDS
GGGTCTGTAGGGATCAGACT+AGG 0.624207 1_4:+65506868 Msa0178140:CDS
TGACCGTAATACAACTGCTG+AGG 0.627393 1_4:-65509642 None:intergenic
AACTGCTATCAATGATGACA+AGG 0.629314 1_4:+65508486 Msa0178140:CDS
TCAATTGAGATTCTTCGTAG+AGG 0.631198 1_4:+65511011 Msa0178140:three_prime_UTR
ACATTCGGAGACTGAACCAT+CGG 0.635247 1_4:-65506708 None:intergenic
TTGTCCTAACCCTTTCCTGG+TGG 0.635698 1_4:-65508258 None:intergenic
ACCAAACCAACATACTGCAA+AGG 0.637186 1_4:+65510583 Msa0178140:CDS
GAAATGAATGGAAAGTTGGT+GGG 0.639653 1_4:+65509039 Msa0178140:CDS
TACCATGCGCTGATTGTCTG+GGG 0.640655 1_4:-65510108 None:intergenic
GGACACATCAATTGATCACA+AGG 0.641302 1_4:+65508048 Msa0178140:CDS
TAGGTGATGTTGGATTCACA+TGG 0.645055 1_4:+65508871 Msa0178140:intron
TGAACATCTATATCCCCTTG+TGG 0.645248 1_4:+65510550 Msa0178140:CDS
TACCCCAGACAATCAGCGCA+TGG 0.646578 1_4:+65510106 Msa0178140:CDS
GGTAGCAGAAGCTAAAGCAG+AGG 0.647511 1_4:-65510087 None:intergenic
CCAGCGGTGCCATTCCACCA+GGG 0.647668 1_4:-65509575 None:intergenic
TATTTGTGGGGAGGGCTCAG+AGG 0.651975 1_4:+65508512 Msa0178140:CDS
CTCGAAGGGAGTGTGAACGA+AGG 0.652910 1_4:+65506798 Msa0178140:CDS
CAGATATGAGAAATTGCAAG+GGG 0.659567 1_4:+65508588 Msa0178140:CDS
GGTGTAAGACAGTCCACAAG+GGG 0.660676 1_4:-65510563 None:intergenic
AAGGTGGCTCTTGACAGTAA+TGG 0.676259 1_4:+65508115 Msa0178140:CDS
TCCCGAGGAAGCAAATAAAG+CGG 0.679076 1_4:+65508930 Msa0178140:CDS
GCGACGGCAGCATTGACCGG+AGG 0.692922 1_4:+65506741 Msa0178140:CDS
TGGTGTAAGACAGTCCACAA+GGG 0.698176 1_4:-65510564 None:intergenic
TGCATCGTAACTCCAACCAA+GGG 0.699834 1_4:+65509937 Msa0178140:CDS
ACCGTAATACAACTGCTGAG+GGG 0.736849 1_4:-65509640 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTCTTAAAATTTTA+TGG - chr1_4:65507293-65507312 None:intergenic 10.0%
!!! TATTAATTTGTATTATTTGA+CGG + chr1_4:65507703-65507722 Msa0178140:intron 10.0%
!! TAGTTATTAAAAATATCTTA+TGG + chr1_4:65507857-65507876 Msa0178140:intron 10.0%
!! AAAGTAAATAAATGTTTAAA+GGG - chr1_4:65509449-65509468 None:intergenic 10.0%
!! GTTTGAATAATTTAATTAAA+GGG - chr1_4:65510239-65510258 None:intergenic 10.0%
!! TGTTTGAATAATTTAATTAA+AGG - chr1_4:65510240-65510259 None:intergenic 10.0%
!! CATCCATAATAATTAATATA+TGG + chr1_4:65507807-65507826 Msa0178140:intron 15.0%
!! CATCCATATATTAATTATTA+TGG - chr1_4:65507813-65507832 None:intergenic 15.0%
!! CATAATAATTAATATATGGA+TGG + chr1_4:65507811-65507830 Msa0178140:intron 15.0%
!! AAAAATCAAGAAACAAAAAT+AGG - chr1_4:65507901-65507920 None:intergenic 15.0%
!! AAATTATATGTTGCATTATT+AGG + chr1_4:65508852-65508871 Msa0178140:intron 15.0%
!! AAAAATGAATATTTCAACAA+AGG - chr1_4:65509232-65509251 None:intergenic 15.0%
!!! TATTCATTTTTGCTTATAAT+TGG + chr1_4:65509295-65509314 Msa0178140:intron 15.0%
!! GAAAGTAAATAAATGTTTAA+AGG - chr1_4:65509450-65509469 None:intergenic 15.0%
!! AGTTTATTCATAAAATCAAT+GGG + chr1_4:65509502-65509521 Msa0178140:intron 15.0%
!! TTATAAATTAACTGATACAA+AGG - chr1_4:65510469-65510488 None:intergenic 15.0%
!!! TTGATAAGCTATTATTATTT+TGG + chr1_4:65510833-65510852 Msa0178140:three_prime_UTR 15.0%
!!! TGATAAGCTATTATTATTTT+GGG + chr1_4:65510834-65510853 Msa0178140:three_prime_UTR 15.0%
!!! TTAACTGTTTCTTGTTAATT+TGG + chr1_4:65506998-65507017 Msa0178140:intron 20.0%
!! TCTAATAAGTCATTCTATAT+AGG - chr1_4:65507493-65507512 None:intergenic 20.0%
!! ATGATATGAATAATGAATCT+CGG - chr1_4:65507522-65507541 None:intergenic 20.0%
!! AATAGATACAACTATAAACA+AGG - chr1_4:65507607-65507626 None:intergenic 20.0%
!! ATAAATACATAAAAATGGGT+TGG - chr1_4:65507641-65507660 None:intergenic 20.0%
!! ATAAAATTGACCAGTAAAAA+AGG - chr1_4:65508812-65508831 None:intergenic 20.0%
!! AATAAATGTTTAAAGGGAAA+CGG - chr1_4:65509443-65509462 None:intergenic 20.0%
!! GAGTTTATTCATAAAATCAA+TGG + chr1_4:65509501-65509520 Msa0178140:intron 20.0%
!! TCATATGCATAATTTAAACA+CGG + chr1_4:65510332-65510351 Msa0178140:intron 20.0%
!!! ACTTGTTTTCTATTTTTTCT+TGG + chr1_4:65510400-65510419 Msa0178140:intron 20.0%
!!! GATAAGCTATTATTATTTTG+GGG + chr1_4:65510835-65510854 Msa0178140:three_prime_UTR 20.0%
! ATCATCTATGTGTTGTAATT+TGG + chr1_4:65507049-65507068 Msa0178140:intron 25.0%
! ATGTTCCTTTCTCAAATTAT+CGG - chr1_4:65507187-65507206 None:intergenic 25.0%
!! TTTTAACGGCATATTAATGT+TGG + chr1_4:65507660-65507679 Msa0178140:intron 25.0%
! TTTAACGGCATATTAATGTT+GGG + chr1_4:65507661-65507680 Msa0178140:intron 25.0%
!!! TTTGTTTCTTGATTTTTCAG+CGG + chr1_4:65507904-65507923 Msa0178140:intron 25.0%
! AATGATAAACAAGTCTATGT+TGG + chr1_4:65508223-65508242 Msa0178140:CDS 25.0%
! ATGATAAACAAGTCTATGTT+GGG + chr1_4:65508224-65508243 Msa0178140:CDS 25.0%
!! AAAGATCTATTTTCTGAGTT+TGG + chr1_4:65508661-65508680 Msa0178140:CDS 25.0%
! AATAAATATATGCAGAGAGA+CGG - chr1_4:65508731-65508750 None:intergenic 25.0%
! GTATATAATGCACACAAAAA+AGG - chr1_4:65508779-65508798 None:intergenic 25.0%
! ATAAATGTTTAAAGGGAAAC+GGG - chr1_4:65509442-65509461 None:intergenic 25.0%
! TTATTCATAAAATCAATGGG+TGG + chr1_4:65509505-65509524 Msa0178140:intron 25.0%
!!! TAACAAGTTATTTTCTCTGT+AGG + chr1_4:65509530-65509549 Msa0178140:intron 25.0%
! TGATATGGCATAACAAAATT+CGG - chr1_4:65509753-65509772 None:intergenic 25.0%
!!! CATTTGGTATTTTTACATGT+AGG + chr1_4:65510142-65510161 Msa0178140:intron 25.0%
! ATTGTTTCCTTAGAGTAAAT+TGG + chr1_4:65510173-65510192 Msa0178140:intron 25.0%
! ATTAAAGGGTTAAAATTGTG+AGG - chr1_4:65510225-65510244 None:intergenic 25.0%
!! GTGTGAGAAATGTAATTTTT+CGG + chr1_4:65510496-65510515 Msa0178140:intron 25.0%
! AATTGAAATTATCAGATGCT+CGG + chr1_4:65510527-65510546 Msa0178140:intron 25.0%
! TTCAATAAGATGAATCACTT+CGG - chr1_4:65510639-65510658 None:intergenic 25.0%
!! ATTTTTGCCAGATAAGTTAT+TGG + chr1_4:65510893-65510912 Msa0178140:three_prime_UTR 25.0%
! CTAGAAGCTAAAAATGAAAA+TGG - chr1_4:65510972-65510991 None:intergenic 25.0%
ATTGTACAAAGCTAAGTGTT+GGG + chr1_4:65507445-65507464 Msa0178140:intron 30.0%
AATCCAGATGAACAATTGTA+AGG + chr1_4:65507564-65507583 Msa0178140:intron 30.0%
ATGAACAATTGTAAGGATGA+AGG + chr1_4:65507571-65507590 Msa0178140:intron 30.0%
TTAACGGCATATTAATGTTG+GGG + chr1_4:65507662-65507681 Msa0178140:intron 30.0%
!! ATATTAATGTTGGGGGTATT+AGG + chr1_4:65507670-65507689 Msa0178140:intron 30.0%
! AAATTTGTGCACAGATTTTG+TGG - chr1_4:65507748-65507767 None:intergenic 30.0%
! ACTGTTGTTATCATAGGTTT+TGG + chr1_4:65507834-65507853 Msa0178140:intron 30.0%
TGAGAAAACATGATACGAAT+AGG - chr1_4:65507974-65507993 None:intergenic 30.0%
ACATACACATTAGTGAACTT+GGG - chr1_4:65508292-65508311 None:intergenic 30.0%
!!! TGATGACAAGGTTTTATTTG+TGG + chr1_4:65508498-65508517 Msa0178140:CDS 30.0%
!!! GATGACAAGGTTTTATTTGT+GGG + chr1_4:65508499-65508518 Msa0178140:CDS 30.0%
!!! ATGACAAGGTTTTATTTGTG+GGG + chr1_4:65508500-65508519 Msa0178140:CDS 30.0%
AACAGATATGAGAAATTGCA+AGG + chr1_4:65508586-65508605 Msa0178140:CDS 30.0%
ACAGATATGAGAAATTGCAA+GGG + chr1_4:65508587-65508606 Msa0178140:CDS 30.0%
! AATCGTCATCAAGATTTTTC+AGG - chr1_4:65508624-65508643 None:intergenic 30.0%
!!! TTCCAACATACCTTTTTTAC+TGG + chr1_4:65508799-65508818 Msa0178140:intron 30.0%
TTCCATTCATTTCATTCAAC+TGG - chr1_4:65509032-65509051 None:intergenic 30.0%
GAATGAAATGAATGGAAAGT+TGG + chr1_4:65509035-65509054 Msa0178140:CDS 30.0%
TTCATTATTAAGTAGCTGAC+TGG + chr1_4:65509172-65509191 Msa0178140:intron 30.0%
TGGCTATAGCTTATAATTAG+TGG + chr1_4:65509192-65509211 Msa0178140:intron 30.0%
!! TCTAAGTTTTATCAACCATG+AGG - chr1_4:65509414-65509433 None:intergenic 30.0%
ATTTACTTTCACAGTTCTCA+TGG + chr1_4:65509460-65509479 Msa0178140:intron 30.0%
TGGTATGTATAAGTTGCATT+TGG + chr1_4:65510126-65510145 Msa0178140:intron 30.0%
CAGAATACCAATTTACTCTA+AGG - chr1_4:65510183-65510202 None:intergenic 30.0%
TTTAAACACGGATCAAATTG+AGG + chr1_4:65510344-65510363 Msa0178140:intron 30.0%
TTGAGGTACATTACTAACTA+AGG + chr1_4:65510361-65510380 Msa0178140:intron 30.0%
GAGCATCTGATAATTTCAAT+TGG - chr1_4:65510528-65510547 None:intergenic 30.0%
!!! CTCAGAGACCTTTATTTTTA+GGG - chr1_4:65510672-65510691 None:intergenic 30.0%
TTGTTTCAATTAGGGTCTGT+AGG + chr1_4:65506856-65506875 Msa0178140:CDS 35.0%
TGTTTCAATTAGGGTCTGTA+GGG + chr1_4:65506857-65506876 Msa0178140:CDS 35.0%
ATTGTGATCATGTGTCATGT+TGG + chr1_4:65507212-65507231 Msa0178140:intron 35.0%
TGTTGGACACTAACATGTAT+CGG + chr1_4:65507229-65507248 Msa0178140:intron 35.0%
! ATTTGTGTCGATGTTATGTC+CGG - chr1_4:65507262-65507281 None:intergenic 35.0%
GTAATCACAAGTGTCAGTAT+CGG + chr1_4:65507323-65507342 Msa0178140:intron 35.0%
! ACGTCTTCAATAAGAAGTGT+CGG + chr1_4:65507372-65507391 Msa0178140:intron 35.0%
! AAGAATCTTTGTAGCATCGA+AGG - chr1_4:65507421-65507440 None:intergenic 35.0%
CATTGTACAAAGCTAAGTGT+TGG + chr1_4:65507444-65507463 Msa0178140:intron 35.0%
CATCCTTACAATTGTTCATC+TGG - chr1_4:65507570-65507589 None:intergenic 35.0%
TAACGGCATATTAATGTTGG+GGG + chr1_4:65507663-65507682 Msa0178140:intron 35.0%
CAATGTGTTCATTAAGAACC+TGG + chr1_4:65508027-65508046 Msa0178140:CDS 35.0%
ACAGTAATGGTCAGTCAAAA+GGG + chr1_4:65508128-65508147 Msa0178140:CDS 35.0%
CACATACACATTAGTGAACT+TGG - chr1_4:65508293-65508312 None:intergenic 35.0%
! GAGGACTTGAAACAACTTTT+TGG + chr1_4:65508340-65508359 Msa0178140:CDS 35.0%
ACAGTCATGAAAGATGCAAA+TGG + chr1_4:65508388-65508407 Msa0178140:CDS 35.0%
CAGTCATGAAAGATGCAAAT+GGG + chr1_4:65508389-65508408 Msa0178140:CDS 35.0%
AATGGGAAATCTAGATGCTT+TGG + chr1_4:65508406-65508425 Msa0178140:CDS 35.0%
AACTGCTATCAATGATGACA+AGG + chr1_4:65508486-65508505 Msa0178140:CDS 35.0%
CAGATATGAGAAATTGCAAG+GGG + chr1_4:65508588-65508607 Msa0178140:CDS 35.0%
! GACCAGTAAAAAAGGTATGT+TGG - chr1_4:65508804-65508823 None:intergenic 35.0%
GTTGCATTATTAGGTGATGT+TGG + chr1_4:65508861-65508880 Msa0178140:intron 35.0%
GTCCAGTTGAATGAAATGAA+TGG + chr1_4:65509027-65509046 Msa0178140:intron 35.0%
TGAAATGAATGGAAAGTTGG+TGG + chr1_4:65509038-65509057 Msa0178140:CDS 35.0%
! GAAATGAATGGAAAGTTGGT+GGG + chr1_4:65509039-65509058 Msa0178140:CDS 35.0%
CATTCCTTTATGAATCCTCA+TGG + chr1_4:65509396-65509415 Msa0178140:intron 35.0%
TCAACCATGAGGATTCATAA+AGG - chr1_4:65509403-65509422 None:intergenic 35.0%
CATATATCTATACCCTTGGT+TGG - chr1_4:65509952-65509971 None:intergenic 35.0%
! CAACCAAGGGTATAGATATA+TGG + chr1_4:65509950-65509969 Msa0178140:CDS 35.0%
TATATGGCCAACAATCGAAA+TGG + chr1_4:65509966-65509985 Msa0178140:CDS 35.0%
!! GTTACTCCTTTTGCCATTTA+TGG + chr1_4:65510266-65510285 Msa0178140:intron 35.0%
!! TCCTTTTGCCATTTATGGTA+GGG + chr1_4:65510271-65510290 Msa0178140:intron 35.0%
TAAGATGAATCACTTCGGAT+TGG - chr1_4:65510634-65510653 None:intergenic 35.0%
!!! ACCTTTATTTTTAGGGCATC+GGG - chr1_4:65510665-65510684 None:intergenic 35.0%
!!! GACCTTTATTTTTAGGGCAT+CGG - chr1_4:65510666-65510685 None:intergenic 35.0%
!!! CCTCAGAGACCTTTATTTTT+AGG - chr1_4:65510673-65510692 None:intergenic 35.0%
CCTAAAAATAAAGGTCTCTG+AGG + chr1_4:65510670-65510689 Msa0178140:CDS 35.0%
TTTGCCAGATAAGTTATTGG+TGG + chr1_4:65510896-65510915 Msa0178140:three_prime_UTR 35.0%
TTGCCAGATAAGTTATTGGT+GGG + chr1_4:65510897-65510916 Msa0178140:three_prime_UTR 35.0%
! AGAGATTCAAGGACATGTTT+TGG + chr1_4:65510929-65510948 Msa0178140:three_prime_UTR 35.0%
TCAATTGAGATTCTTCGTAG+AGG + chr1_4:65511011-65511030 Msa0178140:three_prime_UTR 35.0%
TAAAGTGACGCATTCACGAA+CGG - chr1_4:65506768-65506787 None:intergenic 40.0%
! TCGCTCAGGTTGTTTCAATT+AGG + chr1_4:65506847-65506866 Msa0178140:CDS 40.0%
! CGCTCAGGTTGTTTCAATTA+GGG + chr1_4:65506848-65506867 Msa0178140:CDS 40.0%
CCTTTCTCAAATTATCGGTG+TGG - chr1_4:65507182-65507201 None:intergenic 40.0%
CCACACCGATAATTTGAGAA+AGG + chr1_4:65507179-65507198 Msa0178140:intron 40.0%
ATACTACACATGTCAGACAC+CGG + chr1_4:65507346-65507365 Msa0178140:intron 40.0%
TTCTTATTGAAGACGTGTCC+CGG - chr1_4:65507368-65507387 None:intergenic 40.0%
!! TAATGTTGGGGGTATTAGGT+TGG + chr1_4:65507674-65507693 Msa0178140:intron 40.0%
!! GGATGGACTGTTGTTATCAT+AGG + chr1_4:65507828-65507847 Msa0178140:intron 40.0%
GTTGAGAAGTTCCTTTGCAT+TGG - chr1_4:65507930-65507949 None:intergenic 40.0%
TCAACTTCACTCCTCTGAAT+GGG + chr1_4:65507945-65507964 Msa0178140:CDS 40.0%
AAGTGTTCGGAAAAGTGGAT+CGG + chr1_4:65508003-65508022 Msa0178140:CDS 40.0%
TGTGATCAATTGATGTGTCC+AGG - chr1_4:65508048-65508067 None:intergenic 40.0%
GGACACATCAATTGATCACA+AGG + chr1_4:65508048-65508067 Msa0178140:CDS 40.0%
! CCACCTTACAAGAAAGTACA+GGG - chr1_4:65508102-65508121 None:intergenic 40.0%
GACAGTAATGGTCAGTCAAA+AGG + chr1_4:65508127-65508146 Msa0178140:CDS 40.0%
AATGGTCAGTCAAAAGGGTA+TGG + chr1_4:65508133-65508152 Msa0178140:CDS 40.0%
!! AAAGAGTGCCATCAAACAGT+TGG + chr1_4:65508186-65508205 Msa0178140:CDS 40.0%
!! TTCTGAAGCATCAACTGATG+AGG + chr1_4:65508321-65508340 Msa0178140:CDS 40.0%
!! AAACAACTTTTTGGCCCCTT+TGG + chr1_4:65508349-65508368 Msa0178140:CDS 40.0%
CACTAGTTATCTTGCCAAAG+GGG - chr1_4:65508366-65508385 None:intergenic 40.0%
GCACTAGTTATCTTGCCAAA+GGG - chr1_4:65508367-65508386 None:intergenic 40.0%
TGCACTAGTTATCTTGCCAA+AGG - chr1_4:65508368-65508387 None:intergenic 40.0%
GCTGCAGTTGAGAAGTTAAA+TGG + chr1_4:65508463-65508482 Msa0178140:CDS 40.0%
!!! ACAAGGTTTTATTTGTGGGG+AGG + chr1_4:65508503-65508522 Msa0178140:CDS 40.0%
!!! CAAGGTTTTATTTGTGGGGA+GGG + chr1_4:65508504-65508523 Msa0178140:CDS 40.0%
AATTCTTTCCTGCTCGAACT+TGG - chr1_4:65508566-65508585 None:intergenic 40.0%
TTGGAACTGTAACATCTTGC+AGG + chr1_4:65508680-65508699 Msa0178140:CDS 40.0%
TGGAACTGTAACATCTTGCA+GGG + chr1_4:65508681-65508700 Msa0178140:CDS 40.0%
TAGGTGATGTTGGATTCACA+TGG + chr1_4:65508871-65508890 Msa0178140:intron 40.0%
!! TACCGCTTTATTTGCTTCCT+CGG - chr1_4:65508935-65508954 None:intergenic 40.0%
GGTAAGTATTCAAAGAAGCG+TGG + chr1_4:65508951-65508970 Msa0178140:intron 40.0%
! AAAGCCTTTGTTTGTTGCTG+TGG + chr1_4:65509065-65509084 Msa0178140:CDS 40.0%
ACTTTCACAGTTCTCATGGT+CGG + chr1_4:65509464-65509483 Msa0178140:intron 40.0%
TCCAAAGACAGGGTCAAAAT+GGG + chr1_4:65509775-65509794 Msa0178140:CDS 40.0%
TGGCCATATATCTATACCCT+TGG - chr1_4:65509956-65509975 None:intergenic 40.0%
! ATCCATGCCATTTCGATTGT+TGG - chr1_4:65509976-65509995 None:intergenic 40.0%
TCAAATGTCATCGGCAACAT+TGG - chr1_4:65510008-65510027 None:intergenic 40.0%
ATGTTGCCGATGACATTTGA+TGG + chr1_4:65510008-65510027 Msa0178140:CDS 40.0%
CCAGAACCATCAAATGTCAT+CGG - chr1_4:65510017-65510036 None:intergenic 40.0%
! CTATTGATAATCAGCGTCCA+GGG + chr1_4:65510051-65510070 Msa0178140:CDS 40.0%
!! CTCCTTTTGCCATTTATGGT+AGG + chr1_4:65510270-65510289 Msa0178140:intron 40.0%
ACCCTACCATAAATGGCAAA+AGG - chr1_4:65510275-65510294 None:intergenic 40.0%
ATGCTAGACCCTACCATAAA+TGG - chr1_4:65510282-65510301 None:intergenic 40.0%
TGAACATCTATATCCCCTTG+TGG + chr1_4:65510550-65510569 Msa0178140:CDS 40.0%
ACCAAACCAACATACTGCAA+AGG + chr1_4:65510583-65510602 Msa0178140:CDS 40.0%
! ACCTTTGCAGTATGTTGGTT+TGG - chr1_4:65510587-65510606 None:intergenic 40.0%
AACATACTGCAAAGGTGACA+GGG + chr1_4:65510591-65510610 Msa0178140:CDS 40.0%
TCCCGATGCCCTAAAAATAA+AGG + chr1_4:65510661-65510680 Msa0178140:CDS 40.0%
TGAAGTAATTTCAGCTGCAG+TGG + chr1_4:65510767-65510786 Msa0178140:exon 40.0%
GCTTATCAAGCACAAAAACG+CGG - chr1_4:65510822-65510841 None:intergenic 40.0%
GGCTGATATGTAGAGATTCA+AGG + chr1_4:65510918-65510937 Msa0178140:three_prime_UTR 40.0%
ACATTCGGAGACTGAACCAT+CGG - chr1_4:65506711-65506730 None:intergenic 45.0%
! GTGAATGCGTCACTTTACGT+TGG + chr1_4:65506771-65506790 Msa0178140:CDS 45.0%
TTTACGTTGGCGATCTCGAA+GGG + chr1_4:65506784-65506803 Msa0178140:CDS 45.0%
TTGAAACAACCTGAGCGACT+TGG - chr1_4:65506845-65506864 None:intergenic 45.0%
GACATAAGCGTAACCAAGAG+AGG - chr1_4:65506898-65506917 None:intergenic 45.0%
TGTCAACTTCACCAATGCTC+AGG + chr1_4:65506914-65506933 Msa0178140:CDS 45.0%
AACTTCACCAATGCTCAGGA+TGG + chr1_4:65506918-65506937 Msa0178140:CDS 45.0%
AAACTCACCATCCTGAGCAT+TGG - chr1_4:65506928-65506947 None:intergenic 45.0%
AACATGTATCGGACAGACAC+CGG + chr1_4:65507240-65507259 Msa0178140:intron 45.0%
TACTACACATGTCAGACACC+GGG + chr1_4:65507347-65507366 Msa0178140:intron 45.0%
!! TTTTTCAGCGGCCAATGCAA+AGG + chr1_4:65507916-65507935 Msa0178140:intron 45.0%
CTCAACTTCACTCCTCTGAA+TGG + chr1_4:65507944-65507963 Msa0178140:CDS 45.0%
CGAATAGGTTTCCCATTCAG+AGG - chr1_4:65507959-65507978 None:intergenic 45.0%
CTCAACGTGATCCAAGTGTT+CGG + chr1_4:65507990-65508009 Msa0178140:CDS 45.0%
GATCCAAGTGTTCGGAAAAG+TGG + chr1_4:65507998-65508017 Msa0178140:CDS 45.0%
!! GATCCACTTTTCCGAACACT+TGG - chr1_4:65508004-65508023 None:intergenic 45.0%
AGTGTTCGGAAAAGTGGATC+GGG + chr1_4:65508004-65508023 Msa0178140:CDS 45.0%
! CATGACACTTTTGCTGCGTT+TGG + chr1_4:65508076-65508095 Msa0178140:CDS 45.0%
TGGCCCTGTACTTTCTTGTA+AGG + chr1_4:65508096-65508115 Msa0178140:CDS 45.0%
CCCTGTACTTTCTTGTAAGG+TGG + chr1_4:65508099-65508118 Msa0178140:CDS 45.0%
! GCCACCTTACAAGAAAGTAC+AGG - chr1_4:65508103-65508122 None:intergenic 45.0%
AAGGTGGCTCTTGACAGTAA+TGG + chr1_4:65508115-65508134 Msa0178140:CDS 45.0%
AGTGCCATCAAACAGTTGGA+TGG + chr1_4:65508190-65508209 Msa0178140:CDS 45.0%
CATGCCATCCAACTGTTTGA+TGG - chr1_4:65508197-65508216 None:intergenic 45.0%
! TTTTTGTTCGCCACCAGGAA+AGG + chr1_4:65508248-65508267 Msa0178140:CDS 45.0%
! TTTTGTTCGCCACCAGGAAA+GGG + chr1_4:65508249-65508268 Msa0178140:CDS 45.0%
CATTTGTCCTAACCCTTTCC+TGG - chr1_4:65508264-65508283 None:intergenic 45.0%
CAGGAAAGGGTTAGGACAAA+TGG + chr1_4:65508262-65508281 Msa0178140:CDS 45.0%
GATTCACATGGTCACAGCAA+GGG + chr1_4:65508883-65508902 Msa0178140:CDS 45.0%
TCCCGAGGAAGCAAATAAAG+CGG + chr1_4:65508930-65508949 Msa0178140:CDS 45.0%
!! ACCGCTTTATTTGCTTCCTC+GGG - chr1_4:65508934-65508953 None:intergenic 45.0%
TGAGCCACAGCAACAAACAA+AGG - chr1_4:65509072-65509091 None:intergenic 45.0%
! ATGGTCGGTTGACTGTGTTT+TGG + chr1_4:65509479-65509498 Msa0178140:intron 45.0%
ACCGTAATACAACTGCTGAG+GGG - chr1_4:65509643-65509662 None:intergenic 45.0%
GACCGTAATACAACTGCTGA+GGG - chr1_4:65509644-65509663 None:intergenic 45.0%
TGACCGTAATACAACTGCTG+AGG - chr1_4:65509645-65509664 None:intergenic 45.0%
CAGCAGTTGTATTACGGTCA+AGG + chr1_4:65509645-65509664 Msa0178140:CDS 45.0%
ACAAAATTCGGAGCAACACC+AGG - chr1_4:65509741-65509760 None:intergenic 45.0%
CCATATCAGCTCCAAAGACA+GGG + chr1_4:65509765-65509784 Msa0178140:CDS 45.0%
CTCCAAAGACAGGGTCAAAA+TGG + chr1_4:65509774-65509793 Msa0178140:CDS 45.0%
CTTGATTCTGCTGCACATGT+TGG - chr1_4:65509833-65509852 None:intergenic 45.0%
TTGCATCGTAACTCCAACCA+AGG + chr1_4:65509936-65509955 Msa0178140:CDS 45.0%
TGCATCGTAACTCCAACCAA+GGG + chr1_4:65509937-65509956 Msa0178140:CDS 45.0%
! CCGATGACATTTGATGGTTC+TGG + chr1_4:65510014-65510033 Msa0178140:CDS 45.0%
! CCTGGACGCTGATTATCAAT+AGG - chr1_4:65510053-65510072 None:intergenic 45.0%
! CCTATTGATAATCAGCGTCC+AGG + chr1_4:65510050-65510069 Msa0178140:CDS 45.0%
!! ATACCATGCGCTGATTGTCT+GGG - chr1_4:65510112-65510131 None:intergenic 45.0%
TGGTGTAAGACAGTCCACAA+GGG - chr1_4:65510567-65510586 None:intergenic 45.0%
TTGGTGTAAGACAGTCCACA+AGG - chr1_4:65510568-65510587 None:intergenic 45.0%
CTGTCACCTTTGCAGTATGT+TGG - chr1_4:65510592-65510611 None:intergenic 45.0%
CAACATACTGCAAAGGTGAC+AGG + chr1_4:65510590-65510609 Msa0178140:CDS 45.0%
! GACAGGGATGTTGCTTGAAA+TGG + chr1_4:65510607-65510626 Msa0178140:CDS 45.0%
!! TCTGAAGTTGGTGATCAGCT+TGG + chr1_4:65510725-65510744 Msa0178140:CDS 45.0%
CAGCCCACCAATAACTTATC+TGG - chr1_4:65510903-65510922 None:intergenic 45.0%
!! TAAAATAAATACATAAAAAT+GGG - chr1_4:65507645-65507664 None:intergenic 5.0%
!! TTAAAATAAATACATAAAAA+TGG - chr1_4:65507646-65507665 None:intergenic 5.0%
!!! TTTTTATGTATTTATTTTAA+CGG + chr1_4:65507646-65507665 Msa0178140:intron 5.0%
GATGGTTCAGTCTCCGAATG+TGG + chr1_4:65506710-65506729 Msa0178140:CDS 50.0%
CTTTACGTTGGCGATCTCGA+AGG + chr1_4:65506783-65506802 Msa0178140:CDS 50.0%
TCTGTTTAGCCAAGTCGCTC+AGG + chr1_4:65506833-65506852 Msa0178140:CDS 50.0%
!!! TGGGTTTTTTGTTCGCCACC+AGG + chr1_4:65508243-65508262 Msa0178140:CDS 50.0%
TTGTCCTAACCCTTTCCTGG+TGG - chr1_4:65508261-65508280 None:intergenic 50.0%
GTTGAAAGCCAAGTTCGAGC+AGG + chr1_4:65508555-65508574 Msa0178140:CDS 50.0%
GGATTCACATGGTCACAGCA+AGG + chr1_4:65508882-65508901 Msa0178140:CDS 50.0%
TGCTTCCTCGGGAGTAGAAA+AGG - chr1_4:65508923-65508942 None:intergenic 50.0%
TCAGCGCAAAGAAGAGAGGA+AGG + chr1_4:65509089-65509108 Msa0178140:CDS 50.0%
TTTGCTCAAATCCGTTCCCC+TGG + chr1_4:65509558-65509577 Msa0178140:CDS 50.0%
GCCCCTCAGCAGTTGTATTA+CGG + chr1_4:65509639-65509658 Msa0178140:CDS 50.0%
TATTACGGTCAAGGCACACC+TGG + chr1_4:65509654-65509673 Msa0178140:CDS 50.0%
AAACCAAATCCAGCAGGCTG+AGG - chr1_4:65509690-65509709 None:intergenic 50.0%
TGCTGGAAACCAAATCCAGC+AGG - chr1_4:65509696-65509715 None:intergenic 50.0%
AGCAGATCTTGCCTGGAATG+CGG + chr1_4:65509715-65509734 Msa0178140:CDS 50.0%
GCCATATCAGCTCCAAAGAC+AGG + chr1_4:65509764-65509783 Msa0178140:CDS 50.0%
!! CCCTGTCTTTGGAGCTGATA+TGG - chr1_4:65509768-65509787 None:intergenic 50.0%
!! GCCCATTTTGACCCTGTCTT+TGG - chr1_4:65509779-65509798 None:intergenic 50.0%
GACAGGGTCAAAATGGGCAA+CGG + chr1_4:65509781-65509800 Msa0178140:CDS 50.0%
GGTCAAAATGGGCAACGGAT+AGG + chr1_4:65509786-65509805 Msa0178140:CDS 50.0%
GATTCTGCTGCACATGTTGG+AGG - chr1_4:65509830-65509849 None:intergenic 50.0%
GGCCAACAATCGAAATGGCA+TGG + chr1_4:65509971-65509990 Msa0178140:CDS 50.0%
CGAAATGGCATGGATCTAGC+AGG + chr1_4:65509981-65510000 Msa0178140:CDS 50.0%
GGTAGCAGAAGCTAAAGCAG+AGG - chr1_4:65510090-65510109 None:intergenic 50.0%
!! TACCATGCGCTGATTGTCTG+GGG - chr1_4:65510111-65510130 None:intergenic 50.0%
!! CATACCATGCGCTGATTGTC+TGG - chr1_4:65510113-65510132 None:intergenic 50.0%
GGTGTAAGACAGTCCACAAG+GGG - chr1_4:65510566-65510585 None:intergenic 50.0%
!! AAAGGTCTCTGAGGCATTGC+AGG + chr1_4:65510679-65510698 Msa0178140:CDS 50.0%
GGTCCTTCATGAAGCTGCAT+CGG + chr1_4:65510700-65510719 Msa0178140:CDS 50.0%
GTCCTTCATGAAGCTGCATC+GGG + chr1_4:65510701-65510720 Msa0178140:CDS 50.0%
ATCCCGATGCAGCTTCATGA+AGG - chr1_4:65510706-65510725 None:intergenic 50.0%
GGCTGCGATTTCATCACCGA+TGG + chr1_4:65506692-65506711 Msa0178140:CDS 55.0%
GGTTCAGTCTCCGAATGTGG+TGG + chr1_4:65506713-65506732 Msa0178140:CDS 55.0%
! CTCGAAGGGAGTGTGAACGA+AGG + chr1_4:65506798-65506817 Msa0178140:CDS 55.0%
GGGTCTGTAGGGATCAGACT+AGG + chr1_4:65506868-65506887 Msa0178140:CDS 55.0%
CAGACTAGGCGATCCTCTCT+TGG + chr1_4:65506882-65506901 Msa0178140:CDS 55.0%
TTCGCCACCAGGAAAGGGTT+AGG + chr1_4:65508254-65508273 Msa0178140:CDS 55.0%
ACTGCAGCAGCAGCTGAATC+TGG - chr1_4:65508451-65508470 None:intergenic 55.0%
TATTTGTGGGGAGGGCTCAG+AGG + chr1_4:65508512-65508531 Msa0178140:CDS 55.0%
CATGGTCACAGCAAGGGTTC+TGG + chr1_4:65508889-65508908 Msa0178140:CDS 55.0%
!! CAGCAAGGGTTCTGGTTTCG+TGG + chr1_4:65508897-65508916 Msa0178140:CDS 55.0%
TGGCTCAGCGCAAAGAAGAG+AGG + chr1_4:65509085-65509104 Msa0178140:CDS 55.0%
AGAGAGGAAGGCTCAGTTGC+AGG + chr1_4:65509101-65509120 Msa0178140:CDS 55.0%
AATCCGTTCCCCTGGTGGAA+TGG + chr1_4:65509566-65509585 Msa0178140:CDS 55.0%
AACTGCTGAGGGGCAAGTCT+TGG - chr1_4:65509633-65509652 None:intergenic 55.0%
TTCATACCACCTCAGCCTGC+TGG + chr1_4:65509678-65509697 Msa0178140:CDS 55.0%
TTCCAGCAGCAGATCTTGCC+TGG + chr1_4:65509708-65509727 Msa0178140:CDS 55.0%
TTCCAGGCAAGATCTGCTGC+TGG - chr1_4:65509713-65509732 None:intergenic 55.0%
CGGATAGGTGCTCGACGAAA+TGG + chr1_4:65509801-65509820 Msa0178140:CDS 55.0%
GAGGCAAGTGATGTAGACCC+TGG - chr1_4:65510071-65510090 None:intergenic 55.0%
TACCCCAGACAATCAGCGCA+TGG + chr1_4:65510106-65510125 Msa0178140:CDS 55.0%
! GCTGCATCGGGATCTGAAGT+TGG + chr1_4:65510713-65510732 Msa0178140:CDS 55.0%
GTCTCCGAATGTGGTGGCTC+CGG + chr1_4:65506719-65506738 Msa0178140:CDS 60.0%
CGCATTCACGAACGGTCCTC+CGG - chr1_4:65506760-65506779 None:intergenic 60.0%
! CGTGGCCTTTTCTACTCCCG+AGG + chr1_4:65508915-65508934 Msa0178140:CDS 60.0%
GCTCAAATCCGTTCCCCTGG+TGG + chr1_4:65509561-65509580 Msa0178140:CDS 60.0%
! GTGCCATTCCACCAGGGGAA+CGG - chr1_4:65509572-65509591 None:intergenic 60.0%
GGCTTCCTGGGTACCATCCA+GGG + chr1_4:65509604-65509623 Msa0178140:CDS 60.0%
GCTTCCTGGGTACCATCCAG+GGG + chr1_4:65509605-65509624 Msa0178140:CDS 60.0%
!! CAAGTCTTGGTGCCCCTGGA+TGG - chr1_4:65509620-65509639 None:intergenic 60.0%
GGCTGAGGTGGTATGAAGCC+AGG - chr1_4:65509675-65509694 None:intergenic 60.0%
CCAAATCCAGCAGGCTGAGG+TGG - chr1_4:65509687-65509706 None:intergenic 60.0%
CCACCTCAGCCTGCTGGATT+TGG + chr1_4:65509684-65509703 Msa0178140:CDS 60.0%
ATCTTGCCTGGAATGCGGCC+TGG + chr1_4:65509720-65509739 Msa0178140:CDS 60.0%
GTCGCCGGAGCCACCACATT+CGG - chr1_4:65506726-65506745 None:intergenic 65.0%
GAATGTGGTGGCTCCGGCGA+CGG + chr1_4:65506725-65506744 Msa0178140:CDS 65.0%
!! CAGCGGTGCCATTCCACCAG+GGG - chr1_4:65509577-65509596 None:intergenic 65.0%
!! CCAGCGGTGCCATTCCACCA+GGG - chr1_4:65509578-65509597 None:intergenic 65.0%
! GAATGGCACCGCTGGCTGCA+GGG + chr1_4:65509583-65509602 Msa0178140:CDS 65.0%
GGGCTTCCTGGGTACCATCC+AGG + chr1_4:65509603-65509622 Msa0178140:CDS 65.0%
GCAACACCAGGCCGCATTCC+AGG - chr1_4:65509729-65509748 None:intergenic 65.0%
CCGGTCAATGCTGCCGTCGC+CGG - chr1_4:65506741-65506760 None:intergenic 70.0%
!! CCGGCGACGGCAGCATTGAC+CGG + chr1_4:65506738-65506757 Msa0178140:CDS 70.0%
!! GCGACGGCAGCATTGACCGG+AGG + chr1_4:65506741-65506760 Msa0178140:CDS 70.0%
CCCTGGTGGAATGGCACCGC+TGG + chr1_4:65509575-65509594 Msa0178140:CDS 70.0%
!! GCCAGCGGTGCCATTCCACC+AGG - chr1_4:65509579-65509598 None:intergenic 70.0%
! GGAATGGCACCGCTGGCTGC+AGG + chr1_4:65509582-65509601 Msa0178140:CDS 70.0%
CCAGGAAGCCCTGCAGCCAG+CGG - chr1_4:65509594-65509613 None:intergenic 70.0%
! CGCTGGCTGCAGGGCTTCCT+GGG + chr1_4:65509592-65509611 Msa0178140:CDS 70.0%
GGTGCCCCTGGATGGTACCC+AGG - chr1_4:65509612-65509631 None:intergenic 70.0%
!! GGGGCAAGTCTTGGTGCCCC+TGG - chr1_4:65509624-65509643 None:intergenic 70.0%
! CCGCTGGCTGCAGGGCTTCC+TGG + chr1_4:65509591-65509610 Msa0178140:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 65506690 65511078 65506690 ID=Msa0178140;Name=Msa0178140
chr1_4 mRNA 65506690 65511078 65506690 ID=Msa0178140-mRNA-1;Parent=Msa0178140;Name=Msa0178140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.71|1|1|1|7|309|639
chr1_4 exon 65506690 65506939 65506690 ID=Msa0178140-mRNA-1:exon:21321;Parent=Msa0178140-mRNA-1
chr1_4 exon 65507924 65508702 65507924 ID=Msa0178140-mRNA-1:exon:21322;Parent=Msa0178140-mRNA-1
chr1_4 exon 65508874 65508951 65508874 ID=Msa0178140-mRNA-1:exon:21323;Parent=Msa0178140-mRNA-1
chr1_4 exon 65509033 65509122 65509033 ID=Msa0178140-mRNA-1:exon:21324;Parent=Msa0178140-mRNA-1
chr1_4 exon 65509552 65509851 65509552 ID=Msa0178140-mRNA-1:exon:21325;Parent=Msa0178140-mRNA-1
chr1_4 exon 65509933 65510127 65509933 ID=Msa0178140-mRNA-1:exon:21326;Parent=Msa0178140-mRNA-1
chr1_4 exon 65510542 65511078 65510542 ID=Msa0178140-mRNA-1:exon:21327;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65506690 65506939 65506690 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65507924 65508702 65507924 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65508874 65508951 65508874 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65509033 65509122 65509033 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65509552 65509851 65509552 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65509933 65510127 65509933 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 CDS 65510542 65510769 65510542 ID=Msa0178140-mRNA-1:cds;Parent=Msa0178140-mRNA-1
chr1_4 three_prime_UTR 65510770 65511078 65510770 ID=Msa0178140-mRNA-1:three_prime_utr;Parent=Msa0178140-mRNA-1
Gene Sequence

>Msa0178140

ATGGCTGCGATTTCATCACCGATGGTTCAGTCTCCGAATGTGGTGGCTCCGGCGACGGCAGCATTGACCGGAGGACCGTTCGTGAATGCGTCACTTTACGTTGGCGATCTCGAAGGGAGTGTGAACGAAGGACAACTTTTTGATCTGTTTAGCCAAGTCGCTCAGGTTGTTTCAATTAGGGTCTGTAGGGATCAGACTAGGCGATCCTCTCTTGGTTACGCTTATGTCAACTTCACCAATGCTCAGGATGCGGCCAATGCAAAGGAACTTCTCAACTTCACTCCTCTGAATGGGAAACCTATTCGTATCATGTTTTCTCAACGTGATCCAAGTGTTCGGAAAAGTGGATCGGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATCACAAGGCGTTGCATGACACTTTTGCTGCGTTTGGCCCTGTACTTTCTTGTAAGGTGGCTCTTGACAGTAATGGTCAGTCAAAAGGGTATGGCTTTGTTCAGTTTGACAATGAAGAAGCTGCAAAGAGTGCCATCAAACAGTTGGATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGGTTTTTTGTTCGCCACCAGGAAAGGGTTAGGACAAATGGATCGCCCAAGTTCACTAATGTGTATGTGAAAAATCTTTCTGAAGCATCAACTGATGAGGACTTGAAACAACTTTTTGGCCCCTTTGGCAAGATAACTAGTGCAACAGTCATGAAAGATGCAAATGGGAAATCTAGATGCTTTGGTTTTGTGAATTTTCAAAGTCCAGATTCAGCTGCTGCTGCAGTTGAGAAGTTAAATGGAACTGCTATCAATGATGACAAGGTTTTATTTGTGGGGAGGGCTCAGAGGAAAGCAGAAAGAGAGCATGAGTTGAAAGCCAAGTTCGAGCAGGAAAGAATTAACAGATATGAGAAATTGCAAGGGGCTAATTTGTACCTGAAAAATCTTGATGACGATTTTAATGAAGAAAAGTTGAAAGATCTATTTTCTGAGTTTGGAACTGTAACATCTTGCAGGGTGATGTTGGATTCACATGGTCACAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCCGAGGAAGCAAATAAAGCGTTGAATGAAATGAATGGAAAGTTGGTGGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCTCAGTTGCAGGCACATTTTGCTCAAATCCGTTCCCCTGGTGGAATGGCACCGCTGGCTGCAGGGCTTCCTGGGTACCATCCAGGGGCACCAAGACTTGCCCCTCAGCAGTTGTATTACGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAGATCTTGCCTGGAATGCGGCCTGGTGTTGCTCCGAATTTTGTTATGCCATATCAGCTCCAAAGACAGGGTCAAAATGGGCAACGGATAGGTGCTCGACGAAATGGAAACCTCCAACATGTGCAGCAGAATCAAATGTTGCATCGTAACTCCAACCAAGGGTATAGATATATGGCCAACAATCGAAATGGCATGGATCTAGCAGGTCCAATGTTGCCGATGACATTTGATGGTTCTGGAGTTTCTGCTGCTCCTATTGATAATCAGCGTCCAGGGTCTACATCACTTGCCTCTGCTTTAGCTTCTGCTACCCCAGACAATCAGCGCATGATGCTCGGTGAACATCTATATCCCCTTGTGGACTGTCTTACACCAAACCAACATACTGCAAAGGTGACAGGGATGTTGCTTGAAATGGACCAATCCGAAGTGATTCATCTTATTGAATCTCCCGATGCCCTAAAAATAAAGGTCTCTGAGGCATTGCAGGTCCTTCATGAAGCTGCATCGGGATCTGAAGTTGGTGATCAGCTTGGTTCATTGTCATTGAACGAATGA
Protein sequence

>Msa0178140

MAAISSPMVQSPNVVAPATAALTGGPFVNASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDSNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERVRTNGSPKFTNVYVKNLSEASTDEDLKQLFGPFGKITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAEREHELKAKFEQERINRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRSPGGMAPLAAGLPGYHPGAPRLAPQQLYYGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQQNQMLHRNSNQGYRYMANNRNGMDLAGPMLPMTFDGSGVSAAPIDNQRPGSTSLASALASATPDNQRMMLGEHLYPLVDCLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSEALQVLHEAASGSEVGDQLGSLSLNE*