AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037430 MtrunA17_Chr1g0201151 96.440 646 16 1 1 639 1 646 0.0 1276
Msa0037430 MtrunA17_Chr6g0465751 64.107 638 205 8 1 632 1 620 0.0 790
Msa0037430 MtrunA17_Chr6g0466501 63.963 641 201 9 1 634 1 618 0.0 778
Msa0037430 MtrunA17_Chr6g0465631 66.858 522 163 4 104 625 1 512 0.0 697
Msa0037430 MtrunA17_Chr6g0466451 66.667 522 164 4 104 625 1 512 0.0 696
Msa0037430 MtrunA17_Chr4g0044541 59.150 612 225 13 27 623 31 632 0.0 687
Msa0037430 MtrunA17_Chr6g0465691 63.768 552 177 6 89 634 2 536 0.0 674
Msa0037430 MtrunA17_Chr6g0465691 34.386 285 168 5 30 299 31 311 3.21e-41 157
Msa0037430 MtrunA17_Chr0c09g0493511 63.406 552 183 6 89 634 2 540 0.0 669
Msa0037430 MtrunA17_Chr0c09g0493511 35.439 285 165 5 30 299 31 311 1.33e-44 167
Msa0037430 MtrunA17_Chr1g0153181 56.320 625 254 11 27 639 29 646 0.0 657
Msa0037430 MtrunA17_Chr3g0134141 56.447 636 244 12 13 639 7 618 0.0 634
Msa0037430 MtrunA17_Chr7g0265341 43.021 609 314 10 30 619 70 664 1.27e-146 441
Msa0037430 MtrunA17_Chr1g0179701 41.667 480 243 9 6 474 46 499 1.15e-113 352
Msa0037430 MtrunA17_Chr3g0110211 35.556 180 113 3 29 206 24 202 1.27e-30 124
Msa0037430 MtrunA17_Chr3g0110211 29.570 186 110 5 212 394 28 195 1.55e-16 82.0
Msa0037430 MtrunA17_Chr3g0110211 28.342 187 124 5 111 292 18 199 7.39e-16 79.7
Msa0037430 MtrunA17_Chr6g0465621 64.286 84 25 1 1 84 1 79 7.66e-28 107
Msa0037430 MtrunA17_Chr6g0466441 64.286 84 25 1 1 84 1 79 7.66e-28 107
Msa0037430 MtrunA17_Chr1g0153871 31.655 278 161 11 29 284 96 366 8.47e-27 113
Msa0037430 MtrunA17_Chr1g0153871 24.113 282 204 6 119 396 98 373 5.98e-23 102
Msa0037430 MtrunA17_Chr0c09g0493521 61.446 83 27 2 1 83 1 78 1.50e-26 103
Msa0037430 MtrunA17_Chr0c09g0493581 65.476 84 22 3 1 83 1 78 4.44e-26 102
Msa0037430 MtrunA17_Chr6g0465701 62.500 88 26 3 1 87 1 82 6.76e-26 102
Msa0037430 MtrunA17_Chr3g0133651 29.242 277 170 10 29 284 92 363 5.87e-25 107
Msa0037430 MtrunA17_Chr3g0133651 25.000 308 212 11 120 421 95 389 3.55e-20 93.6
Msa0037430 MtrunA17_Chr4g0074711 28.881 277 170 9 31 285 75 346 2.84e-24 105
Msa0037430 MtrunA17_Chr4g0074711 23.509 285 204 9 120 397 76 353 2.33e-17 84.7
Msa0037430 MtrunA17_Chr2g0288251 28.223 287 178 11 31 294 61 342 1.71e-23 103
Msa0037430 MtrunA17_Chr2g0288251 23.077 286 205 9 120 397 62 340 2.20e-16 81.6
Msa0037430 MtrunA17_Chr6g0465741 74.576 59 15 0 565 623 40 98 2.34e-22 92.4
Msa0037430 MtrunA17_Chr6g0466541 38.650 163 64 5 243 405 2 128 7.33e-22 91.7
Msa0037430 MtrunA17_Chr6g0466541 37.584 149 69 4 151 299 1 125 5.73e-21 89.4
Msa0037430 MtrunA17_Chr6g0466551 60.000 80 32 0 560 639 34 113 8.57e-22 91.7
Msa0037430 MtrunA17_Chr2g0328791 26.599 297 172 10 31 286 16 307 4.52e-20 93.2
Msa0037430 MtrunA17_Chr8g0344491 26.117 291 167 9 26 280 58 336 2.53e-19 90.9
Msa0037430 MtrunA17_Chr8g0344491 27.063 303 177 10 109 382 57 344 1.11e-17 85.9
Msa0037430 MtrunA17_Chr3g0139111 25.993 277 164 9 31 274 61 329 4.04e-19 90.5
Msa0037430 MtrunA17_Chr3g0139111 25.685 292 190 6 110 383 52 334 4.11e-18 87.4
Msa0037430 MtrunA17_Chr4g0045221 27.609 297 166 11 31 285 117 406 6.77e-19 90.1
Msa0037430 MtrunA17_Chr4g0045221 28.141 199 123 7 198 392 113 295 1.47e-12 70.1
Msa0037430 MtrunA17_Chr4g0070231 25.083 303 178 9 8 270 17 310 1.76e-18 88.2
Msa0037430 MtrunA17_Chr4g0070231 24.832 298 184 7 110 383 38 319 9.79e-17 82.8
Msa0037430 MtrunA17_Chr4g0026301 25.591 254 173 6 20 267 100 343 1.41e-15 80.1
Msa0037430 MtrunA17_Chr3g0116631 31.771 192 119 5 206 394 106 288 2.10e-15 77.4
Msa0037430 MtrunA17_Chr3g0116631 26.519 181 111 4 26 190 105 279 3.02e-11 64.7
Msa0037430 MtrunA17_Chr1g0177101 29.012 162 103 2 32 181 110 271 4.98e-15 76.6
Msa0037430 MtrunA17_Chr1g0177101 28.649 185 114 5 211 388 110 283 1.22e-11 66.2
Msa0037430 MtrunA17_Chr1g0177101 28.235 170 107 6 117 274 107 273 4.06e-11 64.7
Msa0037430 MtrunA17_Chr7g0267571 25.854 205 131 4 32 220 111 310 4.63e-14 73.6
Msa0037430 MtrunA17_Chr7g0276201 23.273 275 197 5 22 291 96 361 7.93e-14 74.3
Msa0037430 MtrunA17_Chr3g0101061 25.490 255 132 11 211 423 42 280 1.78e-13 73.2
Msa0037430 MtrunA17_Chr3g0101061 28.324 173 106 6 118 274 40 210 9.71e-11 64.7
Msa0037430 MtrunA17_Chr7g0217261 23.636 275 197 5 20 290 339 604 2.53e-13 73.2
Msa0037430 MtrunA17_Chr1g0181111 29.412 187 107 4 29 190 83 269 3.65e-13 70.5
Msa0037430 MtrunA17_Chr1g0181111 29.208 202 114 5 120 299 86 280 1.05e-12 68.9
Msa0037430 MtrunA17_Chr7g0259641 31.304 230 136 12 102 318 571 791 7.12e-13 72.0
Msa0037430 MtrunA17_Chr7g0259641 28.936 235 144 10 181 402 553 777 7.81e-12 68.6
Msa0037430 MtrunA17_Chr5g0411091 34.595 185 108 7 210 391 97 271 7.23e-13 70.1
Msa0037430 MtrunA17_Chr4g0058151 30.645 186 116 5 211 394 124 298 1.55e-12 68.9
Msa0037430 MtrunA17_Chr4g0031091 37.805 82 50 1 112 192 27 108 3.64e-12 63.5
Msa0037430 MtrunA17_Chr8g0335981 22.711 273 186 8 32 291 217 477 3.80e-12 69.7
Msa0037430 MtrunA17_Chr7g0268551 27.011 348 203 15 209 549 16 319 4.85e-12 68.6
Msa0037430 MtrunA17_Chr1g0211191 31.333 150 85 3 42 174 82 230 1.83e-11 66.6
Msa0037430 MtrunA17_Chr2g0290191 27.717 184 104 8 211 378 6 176 1.99e-11 66.6
Msa0037430 MtrunA17_Chr3g0087481 31.217 189 119 6 193 378 45 225 3.11e-11 63.9
Msa0037430 MtrunA17_Chr4g0068631 25.128 195 124 6 208 396 87 265 3.79e-11 66.2
Msa0037430 MtrunA17_Chr8g0360551 27.801 241 151 7 148 381 10 234 6.66e-11 65.1
Msa0037430 MtrunA17_Chr3g0119311 37.838 74 45 1 120 192 38 111 9.20e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037430 AT1G71770.1 57.532 624 242 13 29 633 58 677 0.0 692
Msa0037430 AT1G71770.2 57.532 624 242 13 29 633 58 677 0.0 692
Msa0037430 AT1G22760.1 57.369 631 236 13 4 619 31 643 0.0 680
Msa0037430 AT4G34110.1 55.000 640 258 14 10 638 9 629 0.0 646
Msa0037430 AT1G49760.1 54.976 633 254 15 29 639 44 667 0.0 626
Msa0037430 AT1G49760.2 54.976 633 254 15 29 639 44 667 0.0 626
Msa0037430 AT2G23350.1 53.407 631 257 15 30 639 46 660 0.0 615
Msa0037430 AT2G36660.1 38.963 598 331 9 28 624 22 586 9.92e-125 382
Msa0037430 AT1G34140.1 49.515 412 173 8 89 473 2 405 4.87e-119 360
Msa0037430 AT1G34140.1 31.802 283 177 4 31 299 32 312 6.28e-37 143
Msa0037430 AT3G16380.1 45.600 375 198 4 31 402 22 393 1.73e-101 320
Msa0037430 AT3G16380.1 34.138 290 169 6 118 403 21 292 8.46e-40 154
Msa0037430 AT3G16380.1 34.197 193 111 4 205 396 17 194 2.02e-22 102
Msa0037430 AT3G16380.1 33.508 191 105 4 29 201 201 387 1.49e-21 99.4
Msa0037430 AT2G18510.1 33.889 180 116 3 29 206 24 202 3.95e-29 119
Msa0037430 AT2G18510.1 27.273 187 115 5 211 394 27 195 8.23e-15 77.0
Msa0037430 AT1G47500.1 31.673 281 162 11 29 284 102 377 5.76e-27 114
Msa0037430 AT1G47500.1 26.071 280 174 12 120 381 105 369 1.33e-19 92.4
Msa0037430 AT3G19130.1 31.544 298 160 12 31 291 109 399 2.87e-26 112
Msa0037430 AT3G19130.1 27.667 300 170 13 116 383 102 386 1.63e-19 92.0
Msa0037430 AT1G47490.1 31.673 281 162 11 29 284 100 375 8.82e-26 110
Msa0037430 AT1G47490.1 26.740 273 181 12 120 381 103 367 1.95e-21 97.8
Msa0037430 AT1G49600.1 29.448 326 186 12 31 324 120 433 1.01e-23 105
Msa0037430 AT1G49600.1 27.622 286 171 11 120 383 121 392 1.20e-19 92.8
Msa0037430 AT1G49600.3 30.847 295 165 11 31 293 120 407 1.14e-23 105
Msa0037430 AT1G49600.3 26.959 319 189 13 114 405 110 411 2.35e-20 94.7
Msa0037430 AT1G49600.2 30.847 295 165 11 31 293 120 407 1.14e-23 105
Msa0037430 AT1G49600.2 26.959 319 189 13 114 405 110 411 2.35e-20 94.7
Msa0037430 AT5G54900.1 27.500 280 176 9 31 288 61 335 1.17e-23 103
Msa0037430 AT5G54900.1 23.826 298 193 11 119 399 61 341 1.20e-15 79.7
Msa0037430 AT1G54080.1 27.273 308 168 11 7 270 32 327 3.34e-23 103
Msa0037430 AT1G54080.1 27.875 287 173 9 109 376 58 329 7.20e-19 90.1
Msa0037430 AT1G54080.1 28.571 175 105 5 210 383 64 219 1.98e-12 70.1
Msa0037430 AT1G11650.2 26.557 305 197 10 2 285 35 333 2.05e-22 100
Msa0037430 AT1G11650.2 23.381 278 199 7 110 379 51 322 3.29e-15 78.6
Msa0037430 AT4G27000.1 27.636 275 174 10 31 285 81 350 3.61e-22 100
Msa0037430 AT4G27000.1 23.973 292 194 11 119 397 81 357 5.36e-14 75.1
Msa0037430 AT1G54080.2 27.244 312 167 12 7 270 32 331 8.30e-22 99.0
Msa0037430 AT1G54080.2 27.835 291 172 10 109 376 58 333 1.77e-17 85.9
Msa0037430 AT1G11650.1 26.182 275 177 9 2 256 35 303 2.68e-20 92.4
Msa0037430 AT3G14100.1 25.267 281 162 8 26 270 55 323 2.99e-19 91.3
Msa0037430 AT3G14100.1 27.758 281 169 8 109 370 54 319 8.67e-17 83.6
Msa0037430 AT3G14100.1 27.473 182 112 5 210 390 60 222 3.26e-12 69.3
Msa0037430 AT5G19350.2 24.731 279 175 7 31 279 25 298 7.72e-19 89.7
Msa0037430 AT5G19350.1 25.088 283 173 7 31 279 25 302 1.46e-18 89.0
Msa0037430 AT1G17370.2 27.491 291 178 10 109 381 49 324 1.35e-16 82.8
Msa0037430 AT1G17370.2 25.540 278 162 9 26 270 50 315 4.61e-16 81.3
Msa0037430 AT1G17370.1 26.871 294 179 10 109 381 49 327 2.87e-16 82.0
Msa0037430 AT1G17370.1 25.623 281 161 9 26 270 50 318 5.42e-16 81.3
Msa0037430 AT1G47500.2 30.058 173 111 6 29 191 102 274 4.81e-16 80.1
Msa0037430 AT4G00830.2 25.912 274 188 6 26 294 112 375 1.21e-15 80.5
Msa0037430 AT4G00830.2 24.372 398 246 13 120 494 118 483 1.14e-14 77.4
Msa0037430 AT4G00830.1 25.912 274 188 6 26 294 112 375 1.21e-15 80.5
Msa0037430 AT4G00830.1 24.372 398 246 13 120 494 118 483 1.14e-14 77.4
Msa0037430 AT4G00830.6 25.912 274 188 6 26 294 112 375 1.21e-15 80.5
Msa0037430 AT4G00830.6 24.372 398 246 13 120 494 118 483 1.14e-14 77.4
Msa0037430 AT2G37220.1 27.419 186 107 3 32 190 93 277 2.16e-15 77.8
Msa0037430 AT4G00830.3 25.830 271 184 6 26 294 112 367 3.01e-15 79.3
Msa0037430 AT4G00830.3 24.874 398 236 14 120 494 118 475 4.23e-14 75.5
Msa0037430 AT4G00830.5 25.830 271 184 6 26 294 112 367 3.01e-15 79.3
Msa0037430 AT4G00830.5 24.874 398 236 14 120 494 118 475 4.23e-14 75.5
Msa0037430 AT1G47490.2 30.058 173 111 6 29 191 100 272 3.37e-15 77.4
Msa0037430 AT4G24770.1 32.979 188 111 6 211 395 152 327 1.36e-14 75.9
Msa0037430 AT4G24770.1 28.324 173 115 3 26 190 146 317 3.40e-12 68.6
Msa0037430 AT4G24770.2 32.979 188 111 6 211 395 152 327 1.36e-14 75.9
Msa0037430 AT4G24770.2 28.324 173 115 3 26 190 146 317 3.40e-12 68.6
Msa0037430 AT1G01080.1 29.843 191 118 6 104 280 95 283 2.87e-14 74.3
Msa0037430 AT1G01080.3 30.978 184 111 6 104 273 95 276 6.51e-14 73.2
Msa0037430 AT1G01080.2 29.688 192 118 6 104 280 95 284 1.02e-13 72.8
Msa0037430 AT4G00830.4 24.311 399 245 14 120 494 118 483 1.06e-13 74.3
Msa0037430 AT4G00830.4 24.818 274 191 6 26 294 112 375 2.41e-12 70.1
Msa0037430 AT2G35410.1 27.419 186 120 4 211 390 97 273 2.64e-13 71.6
Msa0037430 AT2G44710.2 22.677 269 183 8 32 287 216 472 3.12e-13 73.6
Msa0037430 AT2G44710.1 22.677 269 183 8 32 287 216 472 3.12e-13 73.6
Msa0037430 AT2G44710.4 22.677 269 183 8 32 287 131 387 3.32e-13 73.6
Msa0037430 AT3G52380.1 24.000 175 109 3 32 186 118 288 4.47e-13 71.2
Msa0037430 AT3G52380.1 30.052 193 108 8 118 292 116 299 1.33e-11 66.6
Msa0037430 AT3G52380.1 29.032 186 126 5 211 393 118 300 5.74e-11 64.7
Msa0037430 AT3G52150.2 31.319 182 95 6 211 378 78 243 5.85e-13 69.7
Msa0037430 AT3G52150.2 25.434 173 115 3 32 190 78 250 7.51e-11 63.5
Msa0037430 AT3G52150.1 31.319 182 95 6 211 378 78 243 5.85e-13 69.7
Msa0037430 AT3G52150.1 25.434 173 115 3 32 190 78 250 7.51e-11 63.5
Msa0037430 AT5G50250.1 30.890 191 119 6 206 394 110 289 5.99e-13 70.5
Msa0037430 AT5G50250.1 28.333 180 117 4 30 201 113 288 1.22e-12 69.3
Msa0037430 AT5G55550.5 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0037430 AT5G55550.4 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0037430 AT5G55550.9 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0037430 AT5G55550.7 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0037430 AT5G55550.1 26.531 245 139 11 211 441 8 225 7.73e-13 71.6
Msa0037430 AT5G55550.2 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0037430 AT5G55550.3 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0037430 AT5G55550.6 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0037430 AT5G55550.11 26.531 245 139 11 211 441 8 225 1.04e-12 71.2
Msa0037430 AT3G52660.3 22.177 248 179 4 26 267 88 327 3.66e-12 69.3
Msa0037430 AT3G52660.1 22.177 248 179 4 26 267 88 327 3.66e-12 69.3
Msa0037430 AT3G52660.2 22.177 248 179 4 26 267 88 327 3.66e-12 69.3
Msa0037430 AT5G47620.1 27.624 181 106 8 211 378 8 176 3.71e-12 69.3
Msa0037430 AT5G47620.2 27.624 181 106 8 211 378 8 176 3.71e-12 69.3
Msa0037430 AT5G47620.5 27.624 181 106 8 211 378 8 176 3.71e-12 69.3
Msa0037430 AT4G26650.2 25.405 185 112 6 211 378 14 189 5.35e-12 68.9
Msa0037430 AT1G60000.1 25.698 179 126 3 18 190 73 250 5.45e-12 67.0
Msa0037430 AT4G26650.1 25.405 185 112 6 211 378 17 192 6.01e-12 68.6
Msa0037430 AT3G19350.1 48.485 66 33 1 554 619 23 87 6.99e-12 62.8
Msa0037430 AT5G47620.4 26.702 191 117 7 211 378 8 198 7.37e-12 68.6
Msa0037430 AT1G45100.1 27.684 177 111 3 196 370 143 304 9.01e-12 68.2
Msa0037430 AT1G17640.2 25.683 183 120 4 211 391 68 236 1.55e-11 67.0
Msa0037430 AT1G17640.1 25.683 183 120 4 211 391 68 236 1.55e-11 67.0
Msa0037430 AT1G17640.3 25.683 183 120 4 211 391 68 236 1.55e-11 67.0
Msa0037430 AT5G41690.1 26.943 193 126 4 211 389 70 261 1.67e-11 67.8
Msa0037430 AT5G41690.3 26.943 193 126 4 211 389 70 261 1.67e-11 67.8
Msa0037430 AT5G41690.2 26.943 193 126 4 211 389 70 261 1.67e-11 67.8
Msa0037430 AT4G19610.1 30.636 173 109 5 109 272 595 765 1.74e-11 67.8
Msa0037430 AT4G13850.3 41.333 75 43 1 117 190 34 108 1.83e-11 62.8
Msa0037430 AT3G46020.1 34.737 95 61 1 313 406 7 101 1.89e-11 61.6
Msa0037430 AT4G13850.2 41.333 75 43 1 117 190 34 108 2.24e-11 62.8
Msa0037430 AT4G13850.1 41.333 75 43 1 117 190 34 108 2.50e-11 62.8
Msa0037430 AT4G36960.1 29.940 167 104 6 119 278 4 164 2.65e-11 66.2
Msa0037430 AT4G36960.2 29.940 167 104 6 119 278 4 164 2.65e-11 66.2
Msa0037430 AT5G03580.1 39.241 79 47 1 207 285 15 92 6.29e-11 60.1

Find 197 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATAAGCTATTATTATTT+TGG 0.118284 1_1:+66423174 Msa0037430:three_prime_UTR
CCGCTGGCTGCAGGGCTTCC+TGG 0.125743 1_1:+66421932 Msa0037430:CDS
CCCTGTCTTTGGAGCTGATA+TGG 0.234302 1_1:-66422106 None:intergenic
CTCCAAAGACAGGGTCAAAA+TGG 0.262200 1_1:+66422115 Msa0037430:CDS
CATACCATGCGCTGATTGTC+TGG 0.263859 1_1:-66422451 None:intergenic
CATTTGTCCTAACCCTTTCC+TGG 0.268295 1_1:-66420602 None:intergenic
CCACCTCAGCCTGCTGGATT+TGG 0.272099 1_1:+66422025 Msa0037430:CDS
CGCTCAGGTTGTTTCAATTA+GGG 0.273509 1_1:+66419240 Msa0037430:CDS
TCGCTCAGGTTGTTTCAATT+AGG 0.283695 1_1:+66419239 Msa0037430:CDS
CGCTGGCTGCAGGGCTTCCT+GGG 0.283699 1_1:+66421933 Msa0037430:CDS
CCGATGACATTTGATGGTTC+TGG 0.284750 1_1:+66422355 Msa0037430:CDS
CACATACACATTAGTGAACT+TGG 0.296288 1_1:-66420631 None:intergenic
GGGCTTCCTGGGTACCATCC+AGG 0.299327 1_1:+66421944 Msa0037430:CDS
ATCCATGCCATTTCGATTGT+TGG 0.315102 1_1:-66422314 None:intergenic
ACTGCAGCAGCAGCTGAATC+TGG 0.336443 1_1:-66420789 None:intergenic
GGAATGGCACCGCTGGCTGC+AGG 0.341384 1_1:+66421923 Msa0037430:CDS
TACCGCTTTATTTGCTTCCT+CGG 0.346237 1_1:-66421273 None:intergenic
TTGGAACTGTAACATCTTGC+AGG 0.347871 1_1:+66421021 Msa0037430:CDS
CAGCCCACCAATAACTTATC+TGG 0.350131 1_1:-66423241 None:intergenic
CATGGTCACAGCAAGGGTTC+TGG 0.350389 1_1:+66421230 Msa0037430:CDS
CCCTGGTGGAATGGCACCGC+TGG 0.351683 1_1:+66421916 Msa0037430:CDS
CAACCAAGGGTATAGATATA+TGG 0.354482 1_1:+66422291 Msa0037430:CDS
AATGGGAAATCTAGATGCTT+TGG 0.369454 1_1:+66420747 Msa0037430:CDS
AAAGGTCTCTGAGGCATTGC+AGG 0.369465 1_1:+66423020 Msa0037430:CDS
GCTGCAGTTGAGAAGTTAAA+TGG 0.370195 1_1:+66420804 Msa0037430:CDS
ACCTTTGCAGTATGTTGGTT+TGG 0.374003 1_1:-66422925 None:intergenic
CATGCCATCCAACTGTTTGA+TGG 0.376643 1_1:-66420535 None:intergenic
GCCCCTCAGCAGTTGTATTA+CGG 0.376872 1_1:+66421980 Msa0037430:CDS
AGAGAGGAAGGCTCAGTTGC+AGG 0.377439 1_1:+66421442 Msa0037430:CDS
TGAGAAAACATGATACGAAT+AGG 0.384527 1_1:-66420312 None:intergenic
TGGCCCTGTACTTTCTTGTA+AGG 0.384907 1_1:+66420437 Msa0037430:CDS
CGGATAGGTGCTCGACGAAA+TGG 0.388336 1_1:+66422142 Msa0037430:CDS
ATGTTGCCGATGACATTTGA+TGG 0.389353 1_1:+66422349 Msa0037430:CDS
TAGACCTGAATGATATGAAC+TGG 0.391809 1_1:+66423397 Msa0037430:three_prime_UTR
GGCTTCCTGGGTACCATCCA+GGG 0.399660 1_1:+66421945 Msa0037430:CDS
GACAGTAATGGTCAGTCAAA+AGG 0.400879 1_1:+66420468 Msa0037430:CDS
GGGGCAAGTCTTGGTGCCCC+TGG 0.404417 1_1:-66421962 None:intergenic
GCAACACCAGGCCGCATTCC+AGG 0.405751 1_1:-66422067 None:intergenic
AAGCCCAGTTCATATCATTC+AGG 0.407397 1_1:-66423401 None:intergenic
TTCCAGCAGCAGATCTTGCC+TGG 0.414251 1_1:+66422049 Msa0037430:CDS
AGAGATTCAAGGACATGTTT+TGG 0.414309 1_1:+66423270 Msa0037430:three_prime_UTR
CAGGAAAGGGTTAGGACAAA+TGG 0.422143 1_1:+66420603 Msa0037430:CDS
CCGGTCAATGCTGCCGTCGC+CGG 0.426455 1_1:-66419130 None:intergenic
ATGATAAACAAGTCTATGTT+GGG 0.427846 1_1:+66420565 Msa0037430:CDS
CTCAACGTGATCCAAGTGTT+CGG 0.429454 1_1:+66420331 Msa0037430:CDS
CTCAACTTCACTCCTCTGAA+TGG 0.432562 1_1:+66420285 Msa0037430:CDS
TGATATGGCATAACAAAATT+CGG 0.436617 1_1:-66422091 None:intergenic
GATTCTGCTGCACATGTTGG+AGG 0.441316 1_1:-66422168 None:intergenic
TTCGCCACCAGGAAAGGGTT+AGG 0.441421 1_1:+66420595 Msa0037430:CDS
AAAGCCTTTGTTTGTTGCTG+TGG 0.442545 1_1:+66421406 Msa0037430:CDS
TGGCCATATATCTATACCCT+TGG 0.446363 1_1:-66422294 None:intergenic
ATCTTGCCTGGAATGCGGCC+TGG 0.447751 1_1:+66422061 Msa0037430:CDS
GTTGCATTATTAGGTGATGT+TGG 0.448677 1_1:+66421202 Msa0037430:intron
GCCATATCAGCTCCAAAGAC+AGG 0.451036 1_1:+66422105 Msa0037430:CDS
AATTCTTTCCTGCTCGAACT+TGG 0.452537 1_1:-66420904 None:intergenic
CAAGTCTTGGTGCCCCTGGA+TGG 0.453330 1_1:-66421958 None:intergenic
CAGCAAGGGTTCTGGTTTCG+TGG 0.453878 1_1:+66421238 Msa0037430:CDS
TGCTTCCTCGGGAGTAGAAA+AGG 0.455695 1_1:-66421261 None:intergenic
ACAGTCATGAAAGATGCAAA+TGG 0.458938 1_1:+66420729 Msa0037430:CDS
CCCTGTACTTTCTTGTAAGG+TGG 0.459223 1_1:+66420440 Msa0037430:CDS
TTGTTTCAATTAGGGTCTGT+AGG 0.459272 1_1:+66419248 Msa0037430:CDS
GTCTCCGAATGTGGTGGCTC+CGG 0.462851 1_1:+66419111 Msa0037430:CDS
GACAGGGATGTTGCTTGAAA+TGG 0.465292 1_1:+66422948 Msa0037430:CDS
AATGATAAACAAGTCTATGT+TGG 0.465684 1_1:+66420564 Msa0037430:CDS
CCTGGACGCTGATTATCAAT+AGG 0.467031 1_1:-66422391 None:intergenic
TTCATACCACCTCAGCCTGC+TGG 0.468479 1_1:+66422019 Msa0037430:CDS
CGCATTCACGAACGGTCCTC+CGG 0.469198 1_1:-66419149 None:intergenic
GTCGCCGGAGCCACCACATT+CGG 0.473001 1_1:-66419115 None:intergenic
CCGGCGACGGCAGCATTGAC+CGG 0.477791 1_1:+66419130 Msa0037430:CDS
GTCCTTCATGAAGCTGCATC+GGG 0.478100 1_1:+66423042 Msa0037430:CDS
ACCGCTTTATTTGCTTCCTC+GGG 0.479649 1_1:-66421272 None:intergenic
GCCAGCGGTGCCATTCCACC+AGG 0.481094 1_1:-66421917 None:intergenic
CTGTCACCTTTGCAGTATGT+TGG 0.481467 1_1:-66422930 None:intergenic
TCAACTTCACTCCTCTGAAT+GGG 0.482554 1_1:+66420286 Msa0037430:CDS
GAATGTGGTGGCTCCGGCGA+CGG 0.484230 1_1:+66419117 Msa0037430:CDS
AACTGCTGAGGGGCAAGTCT+TGG 0.488367 1_1:-66421971 None:intergenic
TATATGGCCAACAATCGAAA+TGG 0.488751 1_1:+66422307 Msa0037430:CDS
TTCCAGGCAAGATCTGCTGC+TGG 0.488761 1_1:-66422051 None:intergenic
GCACTAGTTATCTTGCCAAA+GGG 0.490127 1_1:-66420705 None:intergenic
GTTGAGAAGTTCCTTTGCAT+TGG 0.492750 1_1:-66420268 None:intergenic
CAACATACTGCAAAGGTGAC+AGG 0.494098 1_1:+66422931 Msa0037430:CDS
GAATGGCACCGCTGGCTGCA+GGG 0.495319 1_1:+66421924 Msa0037430:CDS
TCCAAAGACAGGGTCAAAAT+GGG 0.497020 1_1:+66422116 Msa0037430:CDS
CAGACTAGGCGATCCTCTCT+TGG 0.498348 1_1:+66419274 Msa0037430:CDS
TGTTTCAATTAGGGTCTGTA+GGG 0.499273 1_1:+66419249 Msa0037430:CDS
CAATGTGTTCATTAAGAACC+TGG 0.502190 1_1:+66420368 Msa0037430:CDS
CCTATTGATAATCAGCGTCC+AGG 0.504071 1_1:+66422391 Msa0037430:CDS
AATCCGTTCCCCTGGTGGAA+TGG 0.506540 1_1:+66421907 Msa0037430:CDS
TGTGATCAATTGATGTGTCC+AGG 0.506638 1_1:-66420386 None:intergenic
GATCCAAGTGTTCGGAAAAG+TGG 0.507647 1_1:+66420339 Msa0037430:CDS
TCTGTTTAGCCAAGTCGCTC+AGG 0.509218 1_1:+66419225 Msa0037430:CDS
CTTGATTCTGCTGCACATGT+TGG 0.509410 1_1:-66422171 None:intergenic
GTCCAGTTGAATGAAATGAA+TGG 0.510076 1_1:+66421368 Msa0037430:intron
TTTGCTCAAATCCGTTCCCC+TGG 0.511063 1_1:+66421899 Msa0037430:CDS
AGTGTTCGGAAAAGTGGATC+GGG 0.517337 1_1:+66420345 Msa0037430:CDS
ATACCATGCGCTGATTGTCT+GGG 0.517628 1_1:-66422450 None:intergenic
GGTCCTTCATGAAGCTGCAT+CGG 0.518569 1_1:+66423041 Msa0037430:CDS
ACAGTAATGGTCAGTCAAAA+GGG 0.518664 1_1:+66420469 Msa0037430:CDS
TCAAATGTCATCGGCAACAT+TGG 0.519004 1_1:-66422346 None:intergenic
AACAGATATGAGAAATTGCA+AGG 0.520125 1_1:+66420927 Msa0037430:CDS
GGCTGAGGTGGTATGAAGCC+AGG 0.520624 1_1:-66422013 None:intergenic
TTTACGTTGGCGATCTCGAA+GGG 0.520934 1_1:+66419176 Msa0037430:CDS
TGTCAACTTCACCAATGCTC+AGG 0.521040 1_1:+66419306 Msa0037430:CDS
CATATATCTATACCCTTGGT+TGG 0.521460 1_1:-66422290 None:intergenic
TCTGAAGTTGGTGATCAGCT+TGG 0.524358 1_1:+66423066 Msa0037430:CDS
GAATGAAATGAATGGAAAGT+TGG 0.530915 1_1:+66421376 Msa0037430:CDS
GTGCCATTCCACCAGGGGAA+CGG 0.531086 1_1:-66421910 None:intergenic
GCCACCTTACAAGAAAGTAC+AGG 0.531089 1_1:-66420441 None:intergenic
TGCACTAGTTATCTTGCCAA+AGG 0.533023 1_1:-66420706 None:intergenic
CAGTCATGAAAGATGCAAAT+GGG 0.535240 1_1:+66420730 Msa0037430:CDS
CTTTACGTTGGCGATCTCGA+AGG 0.535531 1_1:+66419175 Msa0037430:CDS
CCAAATCCAGCAGGCTGAGG+TGG 0.536975 1_1:-66422025 None:intergenic
GGCTGATATGTAGAGATTCA+AGG 0.536980 1_1:+66423259 Msa0037430:three_prime_UTR
TTGCCAGATAAGTTATTGGT+GGG 0.540316 1_1:+66423238 Msa0037430:three_prime_UTR
TGCTGGAAACCAAATCCAGC+AGG 0.541904 1_1:-66422034 None:intergenic
TATTACGGTCAAGGCACACC+TGG 0.547147 1_1:+66421995 Msa0037430:CDS
TTTGCCAGATAAGTTATTGG+TGG 0.549894 1_1:+66423237 Msa0037430:three_prime_UTR
GGTGCCCCTGGATGGTACCC+AGG 0.551085 1_1:-66421950 None:intergenic
AATGGTCAGTCAAAAGGGTA+TGG 0.555474 1_1:+66420474 Msa0037430:CDS
TTGAAACAACCTGAGCGACT+TGG 0.559301 1_1:-66419234 None:intergenic
CGAATAGGTTTCCCATTCAG+AGG 0.559642 1_1:-66420297 None:intergenic
GCTTCCTGGGTACCATCCAG+GGG 0.561102 1_1:+66421946 Msa0037430:CDS
ACATACACATTAGTGAACTT+GGG 0.561743 1_1:-66420630 None:intergenic
ACAAAATTCGGAGCAACACC+AGG 0.561825 1_1:-66422079 None:intergenic
CCAGGAAGCCCTGCAGCCAG+CGG 0.562572 1_1:-66421932 None:intergenic
GCTCAAATCCGTTCCCCTGG+TGG 0.562712 1_1:+66421902 Msa0037430:CDS
CGAAATGGCATGGATCTAGC+AGG 0.564881 1_1:+66422322 Msa0037430:CDS
GGTCAAAATGGGCAACGGAT+AGG 0.565521 1_1:+66422127 Msa0037430:CDS
AATTGAAATTATCAGATGCT+CGG 0.569025 1_1:+66422868 Msa0037430:intron
TAAGATGAATCACTTCGGAT+TGG 0.570286 1_1:-66422972 None:intergenic
GGCCAACAATCGAAATGGCA+TGG 0.570608 1_1:+66422312 Msa0037430:CDS
TTCAATAAGATGAATCACTT+CGG 0.573383 1_1:-66422977 None:intergenic
AAACTCACCATCCTGAGCAT+TGG 0.573445 1_1:-66419317 None:intergenic
TTGCATCGTAACTCCAACCA+AGG 0.573794 1_1:+66422277 Msa0037430:CDS
GACCGTAATACAACTGCTGA+GGG 0.575479 1_1:-66421982 None:intergenic
ATCCCGATGCAGCTTCATGA+AGG 0.575668 1_1:-66423044 None:intergenic
GAGGCAAGTGATGTAGACCC+TGG 0.581109 1_1:-66422409 None:intergenic
GATTCACATGGTCACAGCAA+GGG 0.581180 1_1:+66421224 Msa0037430:CDS
AAGTGTTCGGAAAAGTGGAT+CGG 0.582522 1_1:+66420344 Msa0037430:CDS
GGATTCACATGGTCACAGCA+AGG 0.582683 1_1:+66421223 Msa0037430:CDS
CAGCAGTTGTATTACGGTCA+AGG 0.584506 1_1:+66421986 Msa0037430:CDS
GGCTGCGATTTCATCACCGA+TGG 0.587268 1_1:+66419084 Msa0037430:CDS
TGGAACTGTAACATCTTGCA+GGG 0.587771 1_1:+66421022 Msa0037430:CDS
AAACCAAATCCAGCAGGCTG+AGG 0.590059 1_1:-66422028 None:intergenic
TGAAGTAATTTCAGCTGCAG+TGG 0.592647 1_1:+66423108 Msa0037430:exon
GACATAAGCGTAACCAAGAG+AGG 0.592663 1_1:-66419287 None:intergenic
CCAGAACCATCAAATGTCAT+CGG 0.594053 1_1:-66422355 None:intergenic
CCATATCAGCTCCAAAGACA+GGG 0.596118 1_1:+66422106 Msa0037430:CDS
AACATACTGCAAAGGTGACA+GGG 0.597579 1_1:+66422932 Msa0037430:CDS
GTTGAAAGCCAAGTTCGAGC+AGG 0.598139 1_1:+66420896 Msa0037430:CDS
CTATTGATAATCAGCGTCCA+GGG 0.600399 1_1:+66422392 Msa0037430:CDS
CACTAGTTATCTTGCCAAAG+GGG 0.600793 1_1:-66420704 None:intergenic
GCTGCATCGGGATCTGAAGT+TGG 0.602004 1_1:+66423054 Msa0037430:CDS
TTCTGAAGCATCAACTGATG+AGG 0.602081 1_1:+66420662 Msa0037430:CDS
TCAGCGCAAAGAAGAGAGGA+AGG 0.604652 1_1:+66421430 Msa0037430:CDS
AAAGAGTGCCATCAAACAGT+TGG 0.606237 1_1:+66420527 Msa0037430:CDS
AGCAGATCTTGCCTGGAATG+CGG 0.606792 1_1:+66422056 Msa0037430:CDS
GACAGGGTCAAAATGGGCAA+CGG 0.607936 1_1:+66422122 Msa0037430:CDS
GATGGTTCAGTCTCCGAATG+TGG 0.608912 1_1:+66419102 Msa0037430:CDS
TAAAGTGACGCATTCACGAA+CGG 0.610365 1_1:-66419157 None:intergenic
AGACCTGAATGATATGAACT+GGG 0.611208 1_1:+66423398 Msa0037430:three_prime_UTR
CAGCGGTGCCATTCCACCAG+GGG 0.613136 1_1:-66421915 None:intergenic
CCACCTTACAAGAAAGTACA+GGG 0.613727 1_1:-66420440 None:intergenic
AACTTCACCAATGCTCAGGA+TGG 0.614190 1_1:+66419310 Msa0037430:CDS
GTGAATGCGTCACTTTACGT+TGG 0.616829 1_1:+66419163 Msa0037430:CDS
TGAAATGAATGGAAAGTTGG+TGG 0.617759 1_1:+66421379 Msa0037430:CDS
TTGGTGTAAGACAGTCCACA+AGG 0.620718 1_1:-66422906 None:intergenic
TGAGCCACAGCAACAAACAA+AGG 0.620998 1_1:-66421410 None:intergenic
GGTTCAGTCTCCGAATGTGG+TGG 0.623008 1_1:+66419105 Msa0037430:CDS
AGTGCCATCAAACAGTTGGA+TGG 0.623280 1_1:+66420531 Msa0037430:CDS
ACAGATATGAGAAATTGCAA+GGG 0.623843 1_1:+66420928 Msa0037430:CDS
TGGCTCAGCGCAAAGAAGAG+AGG 0.624005 1_1:+66421426 Msa0037430:CDS
GGGTCTGTAGGGATCAGACT+AGG 0.624207 1_1:+66419260 Msa0037430:CDS
TGACCGTAATACAACTGCTG+AGG 0.627393 1_1:-66421983 None:intergenic
AACTGCTATCAATGATGACA+AGG 0.629314 1_1:+66420827 Msa0037430:CDS
TCAATTGAGATTCTTCGTAG+AGG 0.631198 1_1:+66423352 Msa0037430:three_prime_UTR
ACATTCGGAGACTGAACCAT+CGG 0.635247 1_1:-66419100 None:intergenic
TTGTCCTAACCCTTTCCTGG+TGG 0.635698 1_1:-66420599 None:intergenic
ACCAAACCAACATACTGCAA+AGG 0.637186 1_1:+66422924 Msa0037430:CDS
GAAATGAATGGAAAGTTGGT+GGG 0.639653 1_1:+66421380 Msa0037430:CDS
TACCATGCGCTGATTGTCTG+GGG 0.640655 1_1:-66422449 None:intergenic
GGACACATCAATTGATCACA+AGG 0.641302 1_1:+66420389 Msa0037430:CDS
TAGGTGATGTTGGATTCACA+TGG 0.645055 1_1:+66421212 Msa0037430:intron
TGAACATCTATATCCCCTTG+TGG 0.645248 1_1:+66422891 Msa0037430:CDS
TACCCCAGACAATCAGCGCA+TGG 0.646578 1_1:+66422447 Msa0037430:CDS
GGTAGCAGAAGCTAAAGCAG+AGG 0.647511 1_1:-66422428 None:intergenic
CCAGCGGTGCCATTCCACCA+GGG 0.647668 1_1:-66421916 None:intergenic
TATTTGTGGGGAGGGCTCAG+AGG 0.651975 1_1:+66420853 Msa0037430:CDS
CTCGAAGGGAGTGTGAACGA+AGG 0.652910 1_1:+66419190 Msa0037430:CDS
CAGATATGAGAAATTGCAAG+GGG 0.659567 1_1:+66420929 Msa0037430:CDS
GGTGTAAGACAGTCCACAAG+GGG 0.660676 1_1:-66422904 None:intergenic
AAGGTGGCTCTTGACAGTAA+TGG 0.676259 1_1:+66420456 Msa0037430:CDS
TCCCGAGGAAGCAAATAAAG+CGG 0.679076 1_1:+66421271 Msa0037430:CDS
GCGACGGCAGCATTGACCGG+AGG 0.692922 1_1:+66419133 Msa0037430:CDS
TGGTGTAAGACAGTCCACAA+GGG 0.698176 1_1:-66422905 None:intergenic
TGCATCGTAACTCCAACCAA+GGG 0.699834 1_1:+66422278 Msa0037430:CDS
ACCGTAATACAACTGCTGAG+GGG 0.736849 1_1:-66421981 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTCTTAAAATTTTA+TGG - chr1_1:66419634-66419653 None:intergenic 10.0%
!!! TATTAATTTGTATTATTTGA+CGG + chr1_1:66420044-66420063 Msa0037430:intron 10.0%
!! TAGTTATTAAAAATATCTTA+TGG + chr1_1:66420198-66420217 Msa0037430:intron 10.0%
!! AAAGTAAATAAATGTTTAAA+GGG - chr1_1:66421790-66421809 None:intergenic 10.0%
!! GTTTGAATAATTTAATTAAA+GGG - chr1_1:66422580-66422599 None:intergenic 10.0%
!! TGTTTGAATAATTTAATTAA+AGG - chr1_1:66422581-66422600 None:intergenic 10.0%
!!! TTAATTGTTTCTTGTTAATT+TGG + chr1_1:66419390-66419409 Msa0037430:intron 15.0%
!! CATCCATAATAATTAATATA+TGG + chr1_1:66420148-66420167 Msa0037430:intron 15.0%
!! CATCCATATATTAATTATTA+TGG - chr1_1:66420154-66420173 None:intergenic 15.0%
!! CATAATAATTAATATATGGA+TGG + chr1_1:66420152-66420171 Msa0037430:intron 15.0%
!! AAAAATCAAGAAACAAAAAT+AGG - chr1_1:66420242-66420261 None:intergenic 15.0%
!! AAATTATATGTTGCATTATT+AGG + chr1_1:66421193-66421212 Msa0037430:intron 15.0%
!! AAAAATGAATATTTCAACAA+AGG - chr1_1:66421573-66421592 None:intergenic 15.0%
!!! TATTCATTTTTGCTTATAAT+TGG + chr1_1:66421636-66421655 Msa0037430:intron 15.0%
!! GAAAGTAAATAAATGTTTAA+AGG - chr1_1:66421791-66421810 None:intergenic 15.0%
!! AGTTTATTCATAAAATCAAT+GGG + chr1_1:66421843-66421862 Msa0037430:intron 15.0%
!! TTATAAATTAACTGATACAA+AGG - chr1_1:66422810-66422829 None:intergenic 15.0%
!!! TTGATAAGCTATTATTATTT+TGG + chr1_1:66423174-66423193 Msa0037430:three_prime_UTR 15.0%
!!! TGATAAGCTATTATTATTTT+GGG + chr1_1:66423175-66423194 Msa0037430:three_prime_UTR 15.0%
!! TCTAATAAGTCATTCTATAT+AGG - chr1_1:66419834-66419853 None:intergenic 20.0%
!! ATGATATGAATAATGAATCT+CGG - chr1_1:66419863-66419882 None:intergenic 20.0%
!! AATAGATACAACTATAAACA+AGG - chr1_1:66419948-66419967 None:intergenic 20.0%
!! ATAAATACATAAAAATGGGT+TGG - chr1_1:66419982-66420001 None:intergenic 20.0%
!! ATAAAATTGACCAGTAAAAA+AGG - chr1_1:66421153-66421172 None:intergenic 20.0%
!! AATAAATGTTTAAAGGGAAA+CGG - chr1_1:66421784-66421803 None:intergenic 20.0%
!! GAGTTTATTCATAAAATCAA+TGG + chr1_1:66421842-66421861 Msa0037430:intron 20.0%
!! TCATATGCATAATTTAAACA+CGG + chr1_1:66422673-66422692 Msa0037430:intron 20.0%
!!! ACTTGTTTTCTATTTTTTCT+TGG + chr1_1:66422741-66422760 Msa0037430:intron 20.0%
!!! GATAAGCTATTATTATTTTG+GGG + chr1_1:66423176-66423195 Msa0037430:three_prime_UTR 20.0%
! ATGTTCCTTTCTCAAATTAT+CGG - chr1_1:66419528-66419547 None:intergenic 25.0%
!! TTTTAACGGCATATTAATGT+TGG + chr1_1:66420001-66420020 Msa0037430:intron 25.0%
! TTTAACGGCATATTAATGTT+GGG + chr1_1:66420002-66420021 Msa0037430:intron 25.0%
!!! TTTGTTTCTTGATTTTTCAG+CGG + chr1_1:66420245-66420264 Msa0037430:intron 25.0%
! AATGATAAACAAGTCTATGT+TGG + chr1_1:66420564-66420583 Msa0037430:CDS 25.0%
! ATGATAAACAAGTCTATGTT+GGG + chr1_1:66420565-66420584 Msa0037430:CDS 25.0%
!! AAAGATCTATTTTCTGAGTT+TGG + chr1_1:66421002-66421021 Msa0037430:CDS 25.0%
! AATAAATATATGCAGAGAGA+CGG - chr1_1:66421072-66421091 None:intergenic 25.0%
! GTATATAATGCACACAAAAA+AGG - chr1_1:66421120-66421139 None:intergenic 25.0%
! ATAAATGTTTAAAGGGAAAC+GGG - chr1_1:66421783-66421802 None:intergenic 25.0%
! TTATTCATAAAATCAATGGG+TGG + chr1_1:66421846-66421865 Msa0037430:intron 25.0%
!!! TAACAAGTTATTTTCTCTGT+AGG + chr1_1:66421871-66421890 Msa0037430:intron 25.0%
! TGATATGGCATAACAAAATT+CGG - chr1_1:66422094-66422113 None:intergenic 25.0%
!!! CATTTGGTATTTTTACATGT+AGG + chr1_1:66422483-66422502 Msa0037430:intron 25.0%
! ATTGTTTCCTTAGAGTAAAT+TGG + chr1_1:66422514-66422533 Msa0037430:intron 25.0%
! ATTAAAGGGTTAAAATTGTG+AGG - chr1_1:66422566-66422585 None:intergenic 25.0%
!! GTGTGAGAAATGTAATTTTT+CGG + chr1_1:66422837-66422856 Msa0037430:intron 25.0%
! AATTGAAATTATCAGATGCT+CGG + chr1_1:66422868-66422887 Msa0037430:intron 25.0%
! TTCAATAAGATGAATCACTT+CGG - chr1_1:66422980-66422999 None:intergenic 25.0%
!! ATTTTTGCCAGATAAGTTAT+TGG + chr1_1:66423234-66423253 Msa0037430:three_prime_UTR 25.0%
! CTAGAAGCTAAAAATGAAAA+TGG - chr1_1:66423313-66423332 None:intergenic 25.0%
ATTGTACAAAGCTAAGTGTT+GGG + chr1_1:66419786-66419805 Msa0037430:intron 30.0%
AATCCAGATGAACAATTGTA+AGG + chr1_1:66419905-66419924 Msa0037430:intron 30.0%
ATGAACAATTGTAAGGATGA+AGG + chr1_1:66419912-66419931 Msa0037430:intron 30.0%
TTAACGGCATATTAATGTTG+GGG + chr1_1:66420003-66420022 Msa0037430:intron 30.0%
!! ATATTAATGTTGGGGGTATT+AGG + chr1_1:66420011-66420030 Msa0037430:intron 30.0%
! AAATTTGTGCACAGATTTTG+TGG - chr1_1:66420089-66420108 None:intergenic 30.0%
! ACTGTTGTTATCATAGGTTT+TGG + chr1_1:66420175-66420194 Msa0037430:intron 30.0%
TGAGAAAACATGATACGAAT+AGG - chr1_1:66420315-66420334 None:intergenic 30.0%
ACATACACATTAGTGAACTT+GGG - chr1_1:66420633-66420652 None:intergenic 30.0%
!!! TGATGACAAGGTTTTATTTG+TGG + chr1_1:66420839-66420858 Msa0037430:CDS 30.0%
!!! GATGACAAGGTTTTATTTGT+GGG + chr1_1:66420840-66420859 Msa0037430:CDS 30.0%
!!! ATGACAAGGTTTTATTTGTG+GGG + chr1_1:66420841-66420860 Msa0037430:CDS 30.0%
AACAGATATGAGAAATTGCA+AGG + chr1_1:66420927-66420946 Msa0037430:CDS 30.0%
ACAGATATGAGAAATTGCAA+GGG + chr1_1:66420928-66420947 Msa0037430:CDS 30.0%
! AATCGTCATCAAGATTTTTC+AGG - chr1_1:66420965-66420984 None:intergenic 30.0%
!!! TTCCAACATACCTTTTTTAC+TGG + chr1_1:66421140-66421159 Msa0037430:intron 30.0%
TTCCATTCATTTCATTCAAC+TGG - chr1_1:66421373-66421392 None:intergenic 30.0%
GAATGAAATGAATGGAAAGT+TGG + chr1_1:66421376-66421395 Msa0037430:CDS 30.0%
TTCATTATTAAGTAGCTGAC+TGG + chr1_1:66421513-66421532 Msa0037430:intron 30.0%
TGGCTATAGCTTATAATTAG+TGG + chr1_1:66421533-66421552 Msa0037430:intron 30.0%
!! TCTAAGTTTTATCAACCATG+AGG - chr1_1:66421755-66421774 None:intergenic 30.0%
ATTTACTTTCACAGTTCTCA+TGG + chr1_1:66421801-66421820 Msa0037430:intron 30.0%
TGGTATGTATAAGTTGCATT+TGG + chr1_1:66422467-66422486 Msa0037430:intron 30.0%
CAGAATACCAATTTACTCTA+AGG - chr1_1:66422524-66422543 None:intergenic 30.0%
TTTAAACACGGATCAAATTG+AGG + chr1_1:66422685-66422704 Msa0037430:intron 30.0%
TTGAGGTACATTACTAACTA+AGG + chr1_1:66422702-66422721 Msa0037430:intron 30.0%
GAGCATCTGATAATTTCAAT+TGG - chr1_1:66422869-66422888 None:intergenic 30.0%
!!! CTCAGAGACCTTTATTTTTA+GGG - chr1_1:66423013-66423032 None:intergenic 30.0%
TTGTTTCAATTAGGGTCTGT+AGG + chr1_1:66419248-66419267 Msa0037430:CDS 35.0%
TGTTTCAATTAGGGTCTGTA+GGG + chr1_1:66419249-66419268 Msa0037430:CDS 35.0%
ATTGTGATCATGTGTCATGT+TGG + chr1_1:66419553-66419572 Msa0037430:intron 35.0%
TGTTGGACACTAACATGTAT+CGG + chr1_1:66419570-66419589 Msa0037430:intron 35.0%
! ATTTGTGTCGATGTTATGTC+CGG - chr1_1:66419603-66419622 None:intergenic 35.0%
GTAATCACAAGTGTCAGTAT+CGG + chr1_1:66419664-66419683 Msa0037430:intron 35.0%
! ACGTCTTCAATAAGAAGTGT+CGG + chr1_1:66419713-66419732 Msa0037430:intron 35.0%
! AAGAATCTTTGTAGCATCGA+AGG - chr1_1:66419762-66419781 None:intergenic 35.0%
CATTGTACAAAGCTAAGTGT+TGG + chr1_1:66419785-66419804 Msa0037430:intron 35.0%
CATCCTTACAATTGTTCATC+TGG - chr1_1:66419911-66419930 None:intergenic 35.0%
TAACGGCATATTAATGTTGG+GGG + chr1_1:66420004-66420023 Msa0037430:intron 35.0%
CAATGTGTTCATTAAGAACC+TGG + chr1_1:66420368-66420387 Msa0037430:CDS 35.0%
ACAGTAATGGTCAGTCAAAA+GGG + chr1_1:66420469-66420488 Msa0037430:CDS 35.0%
CACATACACATTAGTGAACT+TGG - chr1_1:66420634-66420653 None:intergenic 35.0%
! GAGGACTTGAAACAACTTTT+TGG + chr1_1:66420681-66420700 Msa0037430:CDS 35.0%
ACAGTCATGAAAGATGCAAA+TGG + chr1_1:66420729-66420748 Msa0037430:CDS 35.0%
CAGTCATGAAAGATGCAAAT+GGG + chr1_1:66420730-66420749 Msa0037430:CDS 35.0%
AATGGGAAATCTAGATGCTT+TGG + chr1_1:66420747-66420766 Msa0037430:CDS 35.0%
AACTGCTATCAATGATGACA+AGG + chr1_1:66420827-66420846 Msa0037430:CDS 35.0%
CAGATATGAGAAATTGCAAG+GGG + chr1_1:66420929-66420948 Msa0037430:CDS 35.0%
! GACCAGTAAAAAAGGTATGT+TGG - chr1_1:66421145-66421164 None:intergenic 35.0%
GTTGCATTATTAGGTGATGT+TGG + chr1_1:66421202-66421221 Msa0037430:intron 35.0%
GTCCAGTTGAATGAAATGAA+TGG + chr1_1:66421368-66421387 Msa0037430:intron 35.0%
TGAAATGAATGGAAAGTTGG+TGG + chr1_1:66421379-66421398 Msa0037430:CDS 35.0%
! GAAATGAATGGAAAGTTGGT+GGG + chr1_1:66421380-66421399 Msa0037430:CDS 35.0%
CATTCCTTTATGAATCCTCA+TGG + chr1_1:66421737-66421756 Msa0037430:intron 35.0%
TCAACCATGAGGATTCATAA+AGG - chr1_1:66421744-66421763 None:intergenic 35.0%
CATATATCTATACCCTTGGT+TGG - chr1_1:66422293-66422312 None:intergenic 35.0%
! CAACCAAGGGTATAGATATA+TGG + chr1_1:66422291-66422310 Msa0037430:CDS 35.0%
TATATGGCCAACAATCGAAA+TGG + chr1_1:66422307-66422326 Msa0037430:CDS 35.0%
!! GTTACTCCTTTTGCCATTTA+TGG + chr1_1:66422607-66422626 Msa0037430:intron 35.0%
!! TCCTTTTGCCATTTATGGTA+GGG + chr1_1:66422612-66422631 Msa0037430:intron 35.0%
TAAGATGAATCACTTCGGAT+TGG - chr1_1:66422975-66422994 None:intergenic 35.0%
!!! ACCTTTATTTTTAGGGCATC+GGG - chr1_1:66423006-66423025 None:intergenic 35.0%
!!! GACCTTTATTTTTAGGGCAT+CGG - chr1_1:66423007-66423026 None:intergenic 35.0%
!!! CCTCAGAGACCTTTATTTTT+AGG - chr1_1:66423014-66423033 None:intergenic 35.0%
CCTAAAAATAAAGGTCTCTG+AGG + chr1_1:66423011-66423030 Msa0037430:CDS 35.0%
TTTGCCAGATAAGTTATTGG+TGG + chr1_1:66423237-66423256 Msa0037430:three_prime_UTR 35.0%
TTGCCAGATAAGTTATTGGT+GGG + chr1_1:66423238-66423257 Msa0037430:three_prime_UTR 35.0%
! AGAGATTCAAGGACATGTTT+TGG + chr1_1:66423270-66423289 Msa0037430:three_prime_UTR 35.0%
TCAATTGAGATTCTTCGTAG+AGG + chr1_1:66423352-66423371 Msa0037430:three_prime_UTR 35.0%
TAAAGTGACGCATTCACGAA+CGG - chr1_1:66419160-66419179 None:intergenic 40.0%
! TCGCTCAGGTTGTTTCAATT+AGG + chr1_1:66419239-66419258 Msa0037430:CDS 40.0%
! CGCTCAGGTTGTTTCAATTA+GGG + chr1_1:66419240-66419259 Msa0037430:CDS 40.0%
CCTTTCTCAAATTATCGGTG+TGG - chr1_1:66419523-66419542 None:intergenic 40.0%
CCACACCGATAATTTGAGAA+AGG + chr1_1:66419520-66419539 Msa0037430:intron 40.0%
ATACTACACATGTCAGACAC+CGG + chr1_1:66419687-66419706 Msa0037430:intron 40.0%
TTCTTATTGAAGACGTGTCC+CGG - chr1_1:66419709-66419728 None:intergenic 40.0%
!! TAATGTTGGGGGTATTAGGT+TGG + chr1_1:66420015-66420034 Msa0037430:intron 40.0%
!! GGATGGACTGTTGTTATCAT+AGG + chr1_1:66420169-66420188 Msa0037430:intron 40.0%
GTTGAGAAGTTCCTTTGCAT+TGG - chr1_1:66420271-66420290 None:intergenic 40.0%
TCAACTTCACTCCTCTGAAT+GGG + chr1_1:66420286-66420305 Msa0037430:CDS 40.0%
AAGTGTTCGGAAAAGTGGAT+CGG + chr1_1:66420344-66420363 Msa0037430:CDS 40.0%
TGTGATCAATTGATGTGTCC+AGG - chr1_1:66420389-66420408 None:intergenic 40.0%
GGACACATCAATTGATCACA+AGG + chr1_1:66420389-66420408 Msa0037430:CDS 40.0%
! CCACCTTACAAGAAAGTACA+GGG - chr1_1:66420443-66420462 None:intergenic 40.0%
GACAGTAATGGTCAGTCAAA+AGG + chr1_1:66420468-66420487 Msa0037430:CDS 40.0%
AATGGTCAGTCAAAAGGGTA+TGG + chr1_1:66420474-66420493 Msa0037430:CDS 40.0%
!! AAAGAGTGCCATCAAACAGT+TGG + chr1_1:66420527-66420546 Msa0037430:CDS 40.0%
!! TTCTGAAGCATCAACTGATG+AGG + chr1_1:66420662-66420681 Msa0037430:CDS 40.0%
!! AAACAACTTTTTGGCCCCTT+TGG + chr1_1:66420690-66420709 Msa0037430:CDS 40.0%
CACTAGTTATCTTGCCAAAG+GGG - chr1_1:66420707-66420726 None:intergenic 40.0%
GCACTAGTTATCTTGCCAAA+GGG - chr1_1:66420708-66420727 None:intergenic 40.0%
TGCACTAGTTATCTTGCCAA+AGG - chr1_1:66420709-66420728 None:intergenic 40.0%
GCTGCAGTTGAGAAGTTAAA+TGG + chr1_1:66420804-66420823 Msa0037430:CDS 40.0%
!!! ACAAGGTTTTATTTGTGGGG+AGG + chr1_1:66420844-66420863 Msa0037430:CDS 40.0%
!!! CAAGGTTTTATTTGTGGGGA+GGG + chr1_1:66420845-66420864 Msa0037430:CDS 40.0%
AATTCTTTCCTGCTCGAACT+TGG - chr1_1:66420907-66420926 None:intergenic 40.0%
TTGGAACTGTAACATCTTGC+AGG + chr1_1:66421021-66421040 Msa0037430:CDS 40.0%
TGGAACTGTAACATCTTGCA+GGG + chr1_1:66421022-66421041 Msa0037430:CDS 40.0%
TAGGTGATGTTGGATTCACA+TGG + chr1_1:66421212-66421231 Msa0037430:intron 40.0%
!! TACCGCTTTATTTGCTTCCT+CGG - chr1_1:66421276-66421295 None:intergenic 40.0%
GGTAAGTATTCAAAGAAGCG+TGG + chr1_1:66421292-66421311 Msa0037430:intron 40.0%
! AAAGCCTTTGTTTGTTGCTG+TGG + chr1_1:66421406-66421425 Msa0037430:CDS 40.0%
ACTTTCACAGTTCTCATGGT+CGG + chr1_1:66421805-66421824 Msa0037430:intron 40.0%
TCCAAAGACAGGGTCAAAAT+GGG + chr1_1:66422116-66422135 Msa0037430:CDS 40.0%
TGGCCATATATCTATACCCT+TGG - chr1_1:66422297-66422316 None:intergenic 40.0%
! ATCCATGCCATTTCGATTGT+TGG - chr1_1:66422317-66422336 None:intergenic 40.0%
TCAAATGTCATCGGCAACAT+TGG - chr1_1:66422349-66422368 None:intergenic 40.0%
ATGTTGCCGATGACATTTGA+TGG + chr1_1:66422349-66422368 Msa0037430:CDS 40.0%
CCAGAACCATCAAATGTCAT+CGG - chr1_1:66422358-66422377 None:intergenic 40.0%
! CTATTGATAATCAGCGTCCA+GGG + chr1_1:66422392-66422411 Msa0037430:CDS 40.0%
!! CTCCTTTTGCCATTTATGGT+AGG + chr1_1:66422611-66422630 Msa0037430:intron 40.0%
ACCCTACCATAAATGGCAAA+AGG - chr1_1:66422616-66422635 None:intergenic 40.0%
ATGCTAGACCCTACCATAAA+TGG - chr1_1:66422623-66422642 None:intergenic 40.0%
TGAACATCTATATCCCCTTG+TGG + chr1_1:66422891-66422910 Msa0037430:CDS 40.0%
ACCAAACCAACATACTGCAA+AGG + chr1_1:66422924-66422943 Msa0037430:CDS 40.0%
! ACCTTTGCAGTATGTTGGTT+TGG - chr1_1:66422928-66422947 None:intergenic 40.0%
AACATACTGCAAAGGTGACA+GGG + chr1_1:66422932-66422951 Msa0037430:CDS 40.0%
TCCCGATGCCCTAAAAATAA+AGG + chr1_1:66423002-66423021 Msa0037430:CDS 40.0%
TGAAGTAATTTCAGCTGCAG+TGG + chr1_1:66423108-66423127 Msa0037430:exon 40.0%
GCTTATCAAGCACAAAAACG+CGG - chr1_1:66423163-66423182 None:intergenic 40.0%
GGCTGATATGTAGAGATTCA+AGG + chr1_1:66423259-66423278 Msa0037430:three_prime_UTR 40.0%
ACATTCGGAGACTGAACCAT+CGG - chr1_1:66419103-66419122 None:intergenic 45.0%
! GTGAATGCGTCACTTTACGT+TGG + chr1_1:66419163-66419182 Msa0037430:CDS 45.0%
TTTACGTTGGCGATCTCGAA+GGG + chr1_1:66419176-66419195 Msa0037430:CDS 45.0%
TTGAAACAACCTGAGCGACT+TGG - chr1_1:66419237-66419256 None:intergenic 45.0%
GACATAAGCGTAACCAAGAG+AGG - chr1_1:66419290-66419309 None:intergenic 45.0%
TGTCAACTTCACCAATGCTC+AGG + chr1_1:66419306-66419325 Msa0037430:CDS 45.0%
AACTTCACCAATGCTCAGGA+TGG + chr1_1:66419310-66419329 Msa0037430:CDS 45.0%
AAACTCACCATCCTGAGCAT+TGG - chr1_1:66419320-66419339 None:intergenic 45.0%
AACATGTATCGGACAGACAC+CGG + chr1_1:66419581-66419600 Msa0037430:intron 45.0%
TACTACACATGTCAGACACC+GGG + chr1_1:66419688-66419707 Msa0037430:intron 45.0%
!! TTTTTCAGCGGCCAATGCAA+AGG + chr1_1:66420257-66420276 Msa0037430:intron 45.0%
CTCAACTTCACTCCTCTGAA+TGG + chr1_1:66420285-66420304 Msa0037430:CDS 45.0%
CGAATAGGTTTCCCATTCAG+AGG - chr1_1:66420300-66420319 None:intergenic 45.0%
CTCAACGTGATCCAAGTGTT+CGG + chr1_1:66420331-66420350 Msa0037430:CDS 45.0%
GATCCAAGTGTTCGGAAAAG+TGG + chr1_1:66420339-66420358 Msa0037430:CDS 45.0%
!! GATCCACTTTTCCGAACACT+TGG - chr1_1:66420345-66420364 None:intergenic 45.0%
AGTGTTCGGAAAAGTGGATC+GGG + chr1_1:66420345-66420364 Msa0037430:CDS 45.0%
! CATGACACTTTTGCTGCGTT+TGG + chr1_1:66420417-66420436 Msa0037430:CDS 45.0%
TGGCCCTGTACTTTCTTGTA+AGG + chr1_1:66420437-66420456 Msa0037430:CDS 45.0%
CCCTGTACTTTCTTGTAAGG+TGG + chr1_1:66420440-66420459 Msa0037430:CDS 45.0%
! GCCACCTTACAAGAAAGTAC+AGG - chr1_1:66420444-66420463 None:intergenic 45.0%
AAGGTGGCTCTTGACAGTAA+TGG + chr1_1:66420456-66420475 Msa0037430:CDS 45.0%
AGTGCCATCAAACAGTTGGA+TGG + chr1_1:66420531-66420550 Msa0037430:CDS 45.0%
CATGCCATCCAACTGTTTGA+TGG - chr1_1:66420538-66420557 None:intergenic 45.0%
! TTTTTGTTCGCCACCAGGAA+AGG + chr1_1:66420589-66420608 Msa0037430:CDS 45.0%
! TTTTGTTCGCCACCAGGAAA+GGG + chr1_1:66420590-66420609 Msa0037430:CDS 45.0%
CATTTGTCCTAACCCTTTCC+TGG - chr1_1:66420605-66420624 None:intergenic 45.0%
CAGGAAAGGGTTAGGACAAA+TGG + chr1_1:66420603-66420622 Msa0037430:CDS 45.0%
GATTCACATGGTCACAGCAA+GGG + chr1_1:66421224-66421243 Msa0037430:CDS 45.0%
TCCCGAGGAAGCAAATAAAG+CGG + chr1_1:66421271-66421290 Msa0037430:CDS 45.0%
!! ACCGCTTTATTTGCTTCCTC+GGG - chr1_1:66421275-66421294 None:intergenic 45.0%
TGAGCCACAGCAACAAACAA+AGG - chr1_1:66421413-66421432 None:intergenic 45.0%
! ATGGTCGGTTGACTGTGTTT+TGG + chr1_1:66421820-66421839 Msa0037430:intron 45.0%
ACCGTAATACAACTGCTGAG+GGG - chr1_1:66421984-66422003 None:intergenic 45.0%
GACCGTAATACAACTGCTGA+GGG - chr1_1:66421985-66422004 None:intergenic 45.0%
TGACCGTAATACAACTGCTG+AGG - chr1_1:66421986-66422005 None:intergenic 45.0%
CAGCAGTTGTATTACGGTCA+AGG + chr1_1:66421986-66422005 Msa0037430:CDS 45.0%
ACAAAATTCGGAGCAACACC+AGG - chr1_1:66422082-66422101 None:intergenic 45.0%
CCATATCAGCTCCAAAGACA+GGG + chr1_1:66422106-66422125 Msa0037430:CDS 45.0%
CTCCAAAGACAGGGTCAAAA+TGG + chr1_1:66422115-66422134 Msa0037430:CDS 45.0%
CTTGATTCTGCTGCACATGT+TGG - chr1_1:66422174-66422193 None:intergenic 45.0%
TTGCATCGTAACTCCAACCA+AGG + chr1_1:66422277-66422296 Msa0037430:CDS 45.0%
TGCATCGTAACTCCAACCAA+GGG + chr1_1:66422278-66422297 Msa0037430:CDS 45.0%
! CCGATGACATTTGATGGTTC+TGG + chr1_1:66422355-66422374 Msa0037430:CDS 45.0%
! CCTGGACGCTGATTATCAAT+AGG - chr1_1:66422394-66422413 None:intergenic 45.0%
! CCTATTGATAATCAGCGTCC+AGG + chr1_1:66422391-66422410 Msa0037430:CDS 45.0%
!! ATACCATGCGCTGATTGTCT+GGG - chr1_1:66422453-66422472 None:intergenic 45.0%
TGGTGTAAGACAGTCCACAA+GGG - chr1_1:66422908-66422927 None:intergenic 45.0%
TTGGTGTAAGACAGTCCACA+AGG - chr1_1:66422909-66422928 None:intergenic 45.0%
CTGTCACCTTTGCAGTATGT+TGG - chr1_1:66422933-66422952 None:intergenic 45.0%
CAACATACTGCAAAGGTGAC+AGG + chr1_1:66422931-66422950 Msa0037430:CDS 45.0%
! GACAGGGATGTTGCTTGAAA+TGG + chr1_1:66422948-66422967 Msa0037430:CDS 45.0%
!! TCTGAAGTTGGTGATCAGCT+TGG + chr1_1:66423066-66423085 Msa0037430:CDS 45.0%
CAGCCCACCAATAACTTATC+TGG - chr1_1:66423244-66423263 None:intergenic 45.0%
!! TAAAATAAATACATAAAAAT+GGG - chr1_1:66419986-66420005 None:intergenic 5.0%
!! TTAAAATAAATACATAAAAA+TGG - chr1_1:66419987-66420006 None:intergenic 5.0%
!!! TTTTTATGTATTTATTTTAA+CGG + chr1_1:66419987-66420006 Msa0037430:intron 5.0%
GATGGTTCAGTCTCCGAATG+TGG + chr1_1:66419102-66419121 Msa0037430:CDS 50.0%
CTTTACGTTGGCGATCTCGA+AGG + chr1_1:66419175-66419194 Msa0037430:CDS 50.0%
TCTGTTTAGCCAAGTCGCTC+AGG + chr1_1:66419225-66419244 Msa0037430:CDS 50.0%
!!! TGGGTTTTTTGTTCGCCACC+AGG + chr1_1:66420584-66420603 Msa0037430:CDS 50.0%
TTGTCCTAACCCTTTCCTGG+TGG - chr1_1:66420602-66420621 None:intergenic 50.0%
GTTGAAAGCCAAGTTCGAGC+AGG + chr1_1:66420896-66420915 Msa0037430:CDS 50.0%
GGATTCACATGGTCACAGCA+AGG + chr1_1:66421223-66421242 Msa0037430:CDS 50.0%
TGCTTCCTCGGGAGTAGAAA+AGG - chr1_1:66421264-66421283 None:intergenic 50.0%
TCAGCGCAAAGAAGAGAGGA+AGG + chr1_1:66421430-66421449 Msa0037430:CDS 50.0%
TTTGCTCAAATCCGTTCCCC+TGG + chr1_1:66421899-66421918 Msa0037430:CDS 50.0%
GCCCCTCAGCAGTTGTATTA+CGG + chr1_1:66421980-66421999 Msa0037430:CDS 50.0%
TATTACGGTCAAGGCACACC+TGG + chr1_1:66421995-66422014 Msa0037430:CDS 50.0%
AAACCAAATCCAGCAGGCTG+AGG - chr1_1:66422031-66422050 None:intergenic 50.0%
TGCTGGAAACCAAATCCAGC+AGG - chr1_1:66422037-66422056 None:intergenic 50.0%
AGCAGATCTTGCCTGGAATG+CGG + chr1_1:66422056-66422075 Msa0037430:CDS 50.0%
GCCATATCAGCTCCAAAGAC+AGG + chr1_1:66422105-66422124 Msa0037430:CDS 50.0%
!! CCCTGTCTTTGGAGCTGATA+TGG - chr1_1:66422109-66422128 None:intergenic 50.0%
!! GCCCATTTTGACCCTGTCTT+TGG - chr1_1:66422120-66422139 None:intergenic 50.0%
GACAGGGTCAAAATGGGCAA+CGG + chr1_1:66422122-66422141 Msa0037430:CDS 50.0%
GGTCAAAATGGGCAACGGAT+AGG + chr1_1:66422127-66422146 Msa0037430:CDS 50.0%
GATTCTGCTGCACATGTTGG+AGG - chr1_1:66422171-66422190 None:intergenic 50.0%
GGCCAACAATCGAAATGGCA+TGG + chr1_1:66422312-66422331 Msa0037430:CDS 50.0%
CGAAATGGCATGGATCTAGC+AGG + chr1_1:66422322-66422341 Msa0037430:CDS 50.0%
GGTAGCAGAAGCTAAAGCAG+AGG - chr1_1:66422431-66422450 None:intergenic 50.0%
!! TACCATGCGCTGATTGTCTG+GGG - chr1_1:66422452-66422471 None:intergenic 50.0%
!! CATACCATGCGCTGATTGTC+TGG - chr1_1:66422454-66422473 None:intergenic 50.0%
GGTGTAAGACAGTCCACAAG+GGG - chr1_1:66422907-66422926 None:intergenic 50.0%
!! AAAGGTCTCTGAGGCATTGC+AGG + chr1_1:66423020-66423039 Msa0037430:CDS 50.0%
GGTCCTTCATGAAGCTGCAT+CGG + chr1_1:66423041-66423060 Msa0037430:CDS 50.0%
GTCCTTCATGAAGCTGCATC+GGG + chr1_1:66423042-66423061 Msa0037430:CDS 50.0%
ATCCCGATGCAGCTTCATGA+AGG - chr1_1:66423047-66423066 None:intergenic 50.0%
GGCTGCGATTTCATCACCGA+TGG + chr1_1:66419084-66419103 Msa0037430:CDS 55.0%
GGTTCAGTCTCCGAATGTGG+TGG + chr1_1:66419105-66419124 Msa0037430:CDS 55.0%
! CTCGAAGGGAGTGTGAACGA+AGG + chr1_1:66419190-66419209 Msa0037430:CDS 55.0%
GGGTCTGTAGGGATCAGACT+AGG + chr1_1:66419260-66419279 Msa0037430:CDS 55.0%
CAGACTAGGCGATCCTCTCT+TGG + chr1_1:66419274-66419293 Msa0037430:CDS 55.0%
TTCGCCACCAGGAAAGGGTT+AGG + chr1_1:66420595-66420614 Msa0037430:CDS 55.0%
ACTGCAGCAGCAGCTGAATC+TGG - chr1_1:66420792-66420811 None:intergenic 55.0%
TATTTGTGGGGAGGGCTCAG+AGG + chr1_1:66420853-66420872 Msa0037430:CDS 55.0%
CATGGTCACAGCAAGGGTTC+TGG + chr1_1:66421230-66421249 Msa0037430:CDS 55.0%
!! CAGCAAGGGTTCTGGTTTCG+TGG + chr1_1:66421238-66421257 Msa0037430:CDS 55.0%
TGGCTCAGCGCAAAGAAGAG+AGG + chr1_1:66421426-66421445 Msa0037430:CDS 55.0%
AGAGAGGAAGGCTCAGTTGC+AGG + chr1_1:66421442-66421461 Msa0037430:CDS 55.0%
AATCCGTTCCCCTGGTGGAA+TGG + chr1_1:66421907-66421926 Msa0037430:CDS 55.0%
AACTGCTGAGGGGCAAGTCT+TGG - chr1_1:66421974-66421993 None:intergenic 55.0%
TTCATACCACCTCAGCCTGC+TGG + chr1_1:66422019-66422038 Msa0037430:CDS 55.0%
TTCCAGCAGCAGATCTTGCC+TGG + chr1_1:66422049-66422068 Msa0037430:CDS 55.0%
TTCCAGGCAAGATCTGCTGC+TGG - chr1_1:66422054-66422073 None:intergenic 55.0%
CGGATAGGTGCTCGACGAAA+TGG + chr1_1:66422142-66422161 Msa0037430:CDS 55.0%
GAGGCAAGTGATGTAGACCC+TGG - chr1_1:66422412-66422431 None:intergenic 55.0%
TACCCCAGACAATCAGCGCA+TGG + chr1_1:66422447-66422466 Msa0037430:CDS 55.0%
! GCTGCATCGGGATCTGAAGT+TGG + chr1_1:66423054-66423073 Msa0037430:CDS 55.0%
GTCTCCGAATGTGGTGGCTC+CGG + chr1_1:66419111-66419130 Msa0037430:CDS 60.0%
CGCATTCACGAACGGTCCTC+CGG - chr1_1:66419152-66419171 None:intergenic 60.0%
! CGTGGCCTTTTCTACTCCCG+AGG + chr1_1:66421256-66421275 Msa0037430:CDS 60.0%
GCTCAAATCCGTTCCCCTGG+TGG + chr1_1:66421902-66421921 Msa0037430:CDS 60.0%
! GTGCCATTCCACCAGGGGAA+CGG - chr1_1:66421913-66421932 None:intergenic 60.0%
GGCTTCCTGGGTACCATCCA+GGG + chr1_1:66421945-66421964 Msa0037430:CDS 60.0%
GCTTCCTGGGTACCATCCAG+GGG + chr1_1:66421946-66421965 Msa0037430:CDS 60.0%
!! CAAGTCTTGGTGCCCCTGGA+TGG - chr1_1:66421961-66421980 None:intergenic 60.0%
GGCTGAGGTGGTATGAAGCC+AGG - chr1_1:66422016-66422035 None:intergenic 60.0%
CCAAATCCAGCAGGCTGAGG+TGG - chr1_1:66422028-66422047 None:intergenic 60.0%
CCACCTCAGCCTGCTGGATT+TGG + chr1_1:66422025-66422044 Msa0037430:CDS 60.0%
ATCTTGCCTGGAATGCGGCC+TGG + chr1_1:66422061-66422080 Msa0037430:CDS 60.0%
GTCGCCGGAGCCACCACATT+CGG - chr1_1:66419118-66419137 None:intergenic 65.0%
GAATGTGGTGGCTCCGGCGA+CGG + chr1_1:66419117-66419136 Msa0037430:CDS 65.0%
!! CAGCGGTGCCATTCCACCAG+GGG - chr1_1:66421918-66421937 None:intergenic 65.0%
!! CCAGCGGTGCCATTCCACCA+GGG - chr1_1:66421919-66421938 None:intergenic 65.0%
! GAATGGCACCGCTGGCTGCA+GGG + chr1_1:66421924-66421943 Msa0037430:CDS 65.0%
GGGCTTCCTGGGTACCATCC+AGG + chr1_1:66421944-66421963 Msa0037430:CDS 65.0%
GCAACACCAGGCCGCATTCC+AGG - chr1_1:66422070-66422089 None:intergenic 65.0%
CCGGTCAATGCTGCCGTCGC+CGG - chr1_1:66419133-66419152 None:intergenic 70.0%
!! CCGGCGACGGCAGCATTGAC+CGG + chr1_1:66419130-66419149 Msa0037430:CDS 70.0%
!! GCGACGGCAGCATTGACCGG+AGG + chr1_1:66419133-66419152 Msa0037430:CDS 70.0%
CCCTGGTGGAATGGCACCGC+TGG + chr1_1:66421916-66421935 Msa0037430:CDS 70.0%
!! GCCAGCGGTGCCATTCCACC+AGG - chr1_1:66421920-66421939 None:intergenic 70.0%
! GGAATGGCACCGCTGGCTGC+AGG + chr1_1:66421923-66421942 Msa0037430:CDS 70.0%
CCAGGAAGCCCTGCAGCCAG+CGG - chr1_1:66421935-66421954 None:intergenic 70.0%
! CGCTGGCTGCAGGGCTTCCT+GGG + chr1_1:66421933-66421952 Msa0037430:CDS 70.0%
GGTGCCCCTGGATGGTACCC+AGG - chr1_1:66421953-66421972 None:intergenic 70.0%
!! GGGGCAAGTCTTGGTGCCCC+TGG - chr1_1:66421965-66421984 None:intergenic 70.0%
! CCGCTGGCTGCAGGGCTTCC+TGG + chr1_1:66421932-66421951 Msa0037430:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66419082 66423419 66419082 ID=Msa0037430;Name=Msa0037430
chr1_1 mRNA 66419082 66423419 66419082 ID=Msa0037430-mRNA-1;Parent=Msa0037430;Name=Msa0037430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.71|1|1|1|7|309|639
chr1_1 exon 66419082 66419331 66419082 ID=Msa0037430-mRNA-1:exon:21471;Parent=Msa0037430-mRNA-1
chr1_1 exon 66420265 66421043 66420265 ID=Msa0037430-mRNA-1:exon:21472;Parent=Msa0037430-mRNA-1
chr1_1 exon 66421215 66421292 66421215 ID=Msa0037430-mRNA-1:exon:21473;Parent=Msa0037430-mRNA-1
chr1_1 exon 66421374 66421463 66421374 ID=Msa0037430-mRNA-1:exon:21474;Parent=Msa0037430-mRNA-1
chr1_1 exon 66421893 66422192 66421893 ID=Msa0037430-mRNA-1:exon:21475;Parent=Msa0037430-mRNA-1
chr1_1 exon 66422274 66422468 66422274 ID=Msa0037430-mRNA-1:exon:21476;Parent=Msa0037430-mRNA-1
chr1_1 exon 66422883 66423419 66422883 ID=Msa0037430-mRNA-1:exon:21477;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66419082 66419331 66419082 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66420265 66421043 66420265 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66421215 66421292 66421215 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66421374 66421463 66421374 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66421893 66422192 66421893 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66422274 66422468 66422274 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 CDS 66422883 66423110 66422883 ID=Msa0037430-mRNA-1:cds;Parent=Msa0037430-mRNA-1
chr1_1 three_prime_UTR 66423111 66423419 66423111 ID=Msa0037430-mRNA-1:three_prime_utr;Parent=Msa0037430-mRNA-1
Gene Sequence

>Msa0037430

ATGGCTGCGATTTCATCACCGATGGTTCAGTCTCCGAATGTGGTGGCTCCGGCGACGGCAGCATTGACCGGAGGACCGTTCGTGAATGCGTCACTTTACGTTGGCGATCTCGAAGGGAGTGTGAACGAAGGACAACTTTTTGATCTGTTTAGCCAAGTCGCTCAGGTTGTTTCAATTAGGGTCTGTAGGGATCAGACTAGGCGATCCTCTCTTGGTTACGCTTATGTCAACTTCACCAATGCTCAGGATGCGGCCAATGCAAAGGAACTTCTCAACTTCACTCCTCTGAATGGGAAACCTATTCGTATCATGTTTTCTCAACGTGATCCAAGTGTTCGGAAAAGTGGATCGGGCAATGTGTTCATTAAGAACCTGGACACATCAATTGATCACAAGGCGTTGCATGACACTTTTGCTGCGTTTGGCCCTGTACTTTCTTGTAAGGTGGCTCTTGACAGTAATGGTCAGTCAAAAGGGTATGGCTTTGTTCAGTTTGACAATGAAGAAGCTGCAAAGAGTGCCATCAAACAGTTGGATGGCATGTTGATAAATGATAAACAAGTCTATGTTGGGTTTTTTGTTCGCCACCAGGAAAGGGTTAGGACAAATGGATCGCCCAAGTTCACTAATGTGTATGTGAAAAATCTTTCTGAAGCATCAACTGATGAGGACTTGAAACAACTTTTTGGCCCCTTTGGCAAGATAACTAGTGCAACAGTCATGAAAGATGCAAATGGGAAATCTAGATGCTTTGGTTTTGTGAATTTTCAAAGTCCAGATTCAGCTGCTGCTGCAGTTGAGAAGTTAAATGGAACTGCTATCAATGATGACAAGGTTTTATTTGTGGGGAGGGCTCAGAGGAAAGCAGAAAGAGAGCATGAGTTGAAAGCCAAGTTCGAGCAGGAAAGAATTAACAGATATGAGAAATTGCAAGGGGCTAATTTGTACCTGAAAAATCTTGATGACGATTTTAATGAAGAAAAGTTGAAAGATCTATTTTCTGAGTTTGGAACTGTAACATCTTGCAGGGTGATGTTGGATTCACATGGTCACAGCAAGGGTTCTGGTTTCGTGGCCTTTTCTACTCCCGAGGAAGCAAATAAAGCGTTGAATGAAATGAATGGAAAGTTGGTGGGAAGAAAGCCTTTGTTTGTTGCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCTCAGTTGCAGGCACATTTTGCTCAAATCCGTTCCCCTGGTGGAATGGCACCGCTGGCTGCAGGGCTTCCTGGGTACCATCCAGGGGCACCAAGACTTGCCCCTCAGCAGTTGTATTACGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCCAGCAGCAGATCTTGCCTGGAATGCGGCCTGGTGTTGCTCCGAATTTTGTTATGCCATATCAGCTCCAAAGACAGGGTCAAAATGGGCAACGGATAGGTGCTCGACGAAATGGAAACCTCCAACATGTGCAGCAGAATCAAATGTTGCATCGTAACTCCAACCAAGGGTATAGATATATGGCCAACAATCGAAATGGCATGGATCTAGCAGGTCCAATGTTGCCGATGACATTTGATGGTTCTGGAGTTTCTGCTGCTCCTATTGATAATCAGCGTCCAGGGTCTACATCACTTGCCTCTGCTTTAGCTTCTGCTACCCCAGACAATCAGCGCATGATGCTCGGTGAACATCTATATCCCCTTGTGGACTGTCTTACACCAAACCAACATACTGCAAAGGTGACAGGGATGTTGCTTGAAATGGACCAATCCGAAGTGATTCATCTTATTGAATCTCCCGATGCCCTAAAAATAAAGGTCTCTGAGGCATTGCAGGTCCTTCATGAAGCTGCATCGGGATCTGAAGTTGGTGATCAGCTTGGTTCATTGTCATTGAACGAATGA
Protein sequence

>Msa0037430

MAAISSPMVQSPNVVAPATAALTGGPFVNASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDSNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERVRTNGSPKFTNVYVKNLSEASTDEDLKQLFGPFGKITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAEREHELKAKFEQERINRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQAHFAQIRSPGGMAPLAAGLPGYHPGAPRLAPQQLYYGQGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQQNQMLHRNSNQGYRYMANNRNGMDLAGPMLPMTFDGSGVSAAPIDNQRPGSTSLASALASATPDNQRMMLGEHLYPLVDCLTPNQHTAKVTGMLLEMDQSEVIHLIESPDALKIKVSEALQVLHEAASGSEVGDQLGSLSLNE*