AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0086710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086710 MtrunA17_Chr1g0203101 91.228 114 9 1 1 113 10 123 2.19e-72 221
Msa0086710 MtrunA17_Chr1g0203121 91.228 114 9 1 1 113 10 123 3.07e-72 221
Msa0086710 MtrunA17_Chr7g0271231 56.818 88 38 0 26 113 53 140 5.82e-31 114
Msa0086710 MtrunA17_Chr1g0193381 53.933 89 41 0 25 113 49 137 1.08e-29 110
Msa0086710 MtrunA17_Chr7g0270931 52.222 90 43 0 24 113 47 136 5.77e-29 108
Msa0086710 MtrunA17_Chr1g0193761 50.562 89 44 0 25 113 36 124 4.03e-28 106
Msa0086710 MtrunA17_Chr5g0408881 54.651 86 39 0 28 113 28 113 1.21e-27 105
Msa0086710 MtrunA17_Chr4g0069571 50.562 89 44 0 25 113 54 142 2.64e-27 104
Msa0086710 MtrunA17_Chr8g0369651 45.133 113 61 1 1 113 1 112 3.30e-27 103
Msa0086710 MtrunA17_Chr7g0238491 47.872 94 48 1 21 113 48 141 6.71e-25 97.8
Msa0086710 MtrunA17_Chr5g0418101 48.837 86 44 0 28 113 41 126 3.55e-24 95.5
Msa0086710 MtrunA17_Chr8g0369681 43.396 106 50 1 8 113 16 111 4.25e-23 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0086710 AT5G23870.1 60.177 113 44 1 1 113 8 119 1.29e-41 142
Msa0086710 AT5G23870.4 60.177 113 44 1 1 113 8 119 1.29e-41 142
Msa0086710 AT5G23870.2 60.177 113 44 1 1 113 8 119 1.68e-41 142
Msa0086710 AT5G23870.3 60.177 113 44 1 1 113 8 119 2.20e-41 142
Msa0086710 AT1G57590.1 54.255 94 43 0 20 113 71 164 1.11e-30 114
Msa0086710 AT3G05910.2 51.579 95 45 1 19 113 43 136 2.44e-30 110
Msa0086710 AT3G62060.2 55.294 85 38 0 29 113 55 139 4.84e-30 112
Msa0086710 AT3G62060.1 55.294 85 38 0 29 113 55 139 5.75e-30 111
Msa0086710 AT5G26670.1 54.023 87 40 0 27 113 51 137 8.76e-30 111
Msa0086710 AT3G05910.1 55.172 87 38 1 27 113 51 136 1.54e-29 110
Msa0086710 AT2G46930.1 53.191 94 44 0 20 113 44 137 2.61e-29 110
Msa0086710 AT4G19420.3 48.544 103 53 0 11 113 7 109 4.52e-29 107
Msa0086710 AT4G19420.1 48.544 103 53 0 11 113 7 109 5.65e-28 106
Msa0086710 AT4G19420.2 48.544 103 53 0 11 113 7 109 5.65e-28 106
Msa0086710 AT4G19420.4 48.544 103 53 0 11 113 7 109 6.61e-28 106
Msa0086710 AT4G19410.1 50.588 85 42 0 29 113 24 108 9.31e-26 100
Msa0086710 AT3G09410.3 50.588 85 42 0 29 113 61 145 1.16e-25 99.8
Msa0086710 AT4G19410.2 50.588 85 42 0 29 113 24 108 1.58e-25 100
Msa0086710 AT3G09410.1 50.588 85 42 0 29 113 61 145 2.10e-25 99.4
Msa0086710 AT5G45280.1 47.059 85 45 0 29 113 24 108 1.33e-24 96.7
Msa0086710 AT5G45280.2 47.059 85 45 0 29 113 24 108 2.13e-24 96.3
Msa0086710 AT1G09550.1 47.126 87 46 0 27 113 40 126 1.02e-23 94.4
Msa0086710 AT3G09405.1 42.593 108 60 1 6 113 30 135 1.40e-23 94.4

Find 60 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTGAAGTTCTCATATT+TGG 0.163453 1_2:+67447974 None:intergenic
TAATTAATTATTTATTGTTA+TGG 0.296912 1_2:-67453264 Msa0086710:five_prime_UTR
AAATCGAGGCTTCATTGATT+TGG 0.300538 1_2:+67453227 None:intergenic
ATGGTAAATCACAATGGATT+TGG 0.303540 1_2:+67453167 None:intergenic
TTATTATTGAATGAATATAT+TGG 0.304331 1_2:+67453496 None:intergenic
TATCACCTGGACAGAGGATT+TGG 0.306526 1_2:-67452744 Msa0086710:CDS
ACCCACCATCAAACAGAATA+TGG 0.318619 1_2:+67453583 None:intergenic
CACGCTCAATCTAAGGTAAA+AGG 0.320487 1_2:+67453331 None:intergenic
TTGATCCATATTCTGTTTGA+TGG 0.344076 1_2:-67453588 Msa0086710:five_prime_UTR
TGTTTGTAGAAAGCTTTATA+AGG 0.348198 1_2:+67453431 None:intergenic
TAAAACGCACGCTCAATCTA+AGG 0.363709 1_2:+67453324 None:intergenic
TTGTTTGGATGGGAGCTTAC+CGG 0.373779 1_2:-67452769 Msa0086710:CDS
TTAAAAGAATATTGAAGAAA+TGG 0.375798 1_2:+67453148 None:intergenic
GAAAGAAACGTAAACGGAAA+TGG 0.395921 1_2:+67453189 None:intergenic
AGGTTGATAGAATAGAAATA+TGG 0.402353 1_2:+67453351 None:intergenic
CAATTGGCTTCTACAATTTG+AGG 0.416598 1_2:-67452709 Msa0086710:intron
GTGTAAATTTATAGTTTGTT+TGG 0.418128 1_2:-67452784 Msa0086710:intron
TTGGAGCTGGTAAAGACAAT+TGG 0.426944 1_2:-67452725 Msa0086710:CDS
AAATTTATAGTTTGTTTGGA+TGG 0.442549 1_2:-67452780 Msa0086710:intron
TATTGATTTACCTGGATTAA+CGG 0.447581 1_2:+67447932 None:intergenic
AAAAGAAAGAGAAGCGTGAA+AGG 0.456845 1_2:+67453389 None:intergenic
GTTAACAACGCACGTGAAAC+CGG 0.458646 1_2:-67452884 Msa0086710:CDS
TCCATATTCTGTTTGATGGT+GGG 0.479201 1_2:-67453584 Msa0086710:five_prime_UTR
TATGGTACTTGCCAGGGAGG+TGG 0.482699 1_2:-67448065 Msa0086710:intron
TGGAGAGAGCGCAAACCCGC+AGG 0.486391 1_2:-67448016 Msa0086710:CDS
AGAGCAGATATTGATTTACC+TGG 0.488947 1_2:+67447924 None:intergenic
AATTTATAGTTTGTTTGGAT+GGG 0.489051 1_2:-67452779 Msa0086710:intron
GACCAAATATGAGAACTTCA+AGG 0.504679 1_2:-67447976 Msa0086710:CDS
ATCCATATTCTGTTTGATGG+TGG 0.513206 1_2:-67453585 Msa0086710:five_prime_UTR
CAATGACTTGAAATCATGCT+TGG 0.518177 1_2:-67448036 Msa0086710:CDS
AACAATGCTACCGTTAATCC+AGG 0.520859 1_2:-67447942 Msa0086710:CDS
TTAATTAAACTTACAAGCAC+CGG 0.526317 1_2:+67452865 None:intergenic
GTAATTTGTTGAACCCCTGC+GGG 0.527566 1_2:+67448001 None:intergenic
GAGCTTACCGGCATATCACC+TGG 0.528817 1_2:-67452757 Msa0086710:CDS
CAGCTCCAAATCCTCTGTCC+AGG 0.533114 1_2:+67452739 None:intergenic
GATTTGGAAAGAAACGTAAA+CGG 0.538893 1_2:+67453183 None:intergenic
TGTAATTTGTTGAACCCCTG+CGG 0.557536 1_2:+67448000 None:intergenic
GGAGTGTGTGTGGTGTGGAA+TGG 0.557904 1_2:+67453560 None:intergenic
TTCTGTTACGATGAAATTCG+CGG 0.563354 1_2:-67452993 Msa0086710:exon
GGAAGGGAGTGTGTGTGGTG+TGG 0.563797 1_2:+67453555 None:intergenic
GAGAGGGAAGGGAGTGTGTG+TGG 0.564839 1_2:+67453550 None:intergenic
ATCTAATCACAGTGGAGGCA+TGG 0.566431 1_2:-67452952 Msa0086710:CDS
TTGAGAGAATTGGAAACAAG+TGG 0.568513 1_2:-67453040 Msa0086710:five_prime_UTR
CTGGACAGAGGATTTGGAGC+TGG 0.569614 1_2:-67452738 Msa0086710:CDS
GGAGAGAGCGCAAACCCGCA+GGG 0.576040 1_2:-67448015 Msa0086710:CDS
AAGCCTCGATTTCAATTACG+TGG 0.580072 1_2:-67453216 Msa0086710:five_prime_UTR
CGGTGTCGTATTGAGAAGGA+AGG 0.580486 1_2:+67453470 None:intergenic
CCTCTGTCCAGGTGATATGC+CGG 0.583498 1_2:+67452750 None:intergenic
ACCAAATATGAGAACTTCAA+GGG 0.586887 1_2:-67447975 Msa0086710:CDS
GTACTTGCCAGGGAGGTGGT+TGG 0.599266 1_2:-67448061 Msa0086710:intron
TGCGCGGTGTCGTATTGAGA+AGG 0.606929 1_2:+67453466 None:intergenic
AATCCACGTAATTGAAATCG+AGG 0.627604 1_2:+67453213 None:intergenic
GTTGTATCTAATCACAGTGG+AGG 0.638321 1_2:-67452957 Msa0086710:CDS
GAAGAAATGGTAAATCACAA+TGG 0.649286 1_2:+67453161 None:intergenic
GAGAGAGCGCAAACCCGCAG+GGG 0.664105 1_2:-67448014 Msa0086710:CDS
CCGGCATATCACCTGGACAG+AGG 0.685149 1_2:-67452750 Msa0086710:CDS
AAGGAGTGTAGTGTAGTGCG+CGG 0.696531 1_2:+67453450 None:intergenic
GGTGTCGTATTGAGAAGGAA+GGG 0.704412 1_2:+67453471 None:intergenic
TGTTACGATGAAATTCGCGG+TGG 0.719294 1_2:-67452990 Msa0086710:exon
ATTGTTGTATCTAATCACAG+TGG 0.781002 1_2:-67452960 Msa0086710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAAAATAAAAAT+AGG - chr1_2:67449320-67449339 Msa0086710:intron 0.0%
!! TTATTATTGAATGAATATAT+TGG + chr1_2:67447989-67448008 None:intergenic 10.0%
!! ATTAATTTCATTGAAATTAT+TGG - chr1_2:67448635-67448654 Msa0086710:intron 10.0%
!!! AAAAGAAAGTTTTTTTTTTA+AGG - chr1_2:67449850-67449869 Msa0086710:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr1_2:67450025-67450044 Msa0086710:intron 10.0%
!!! ATATTATGAAAATTCTTTTA+AGG + chr1_2:67451095-67451114 None:intergenic 10.0%
!! TCATAATATTAGTAATTATT+TGG - chr1_2:67451106-67451125 Msa0086710:intron 10.0%
!! TCATAATATTATTAACTATT+TGG - chr1_2:67451186-67451205 Msa0086710:intron 10.0%
!! TAATTATATGTCAAAATTAA+TGG - chr1_2:67451242-67451261 Msa0086710:intron 10.0%
!!! GTTAATTTTTTAAAAACATA+TGG + chr1_2:67451457-67451476 None:intergenic 10.0%
!!! ACTTAATCTTTTTTTTTTTA+TGG + chr1_2:67452129-67452148 None:intergenic 10.0%
!!! ACCTTTTTATTATTTTTTAA+GGG - chr1_2:67452346-67452365 Msa0086710:intron 10.0%
!! TAGTTGAATTTAAATATTTA+AGG - chr1_2:67453079-67453098 Msa0086710:five_prime_UTR 10.0%
!! TAAATATTTAAGGATTAAAT+CGG - chr1_2:67453089-67453108 Msa0086710:five_prime_UTR 10.0%
!! TTAAAAGAATATTGAAGAAA+TGG + chr1_2:67448337-67448356 None:intergenic 15.0%
!!! TTATTTATTGAAATTTTGAG+TGG - chr1_2:67448676-67448695 Msa0086710:intron 15.0%
!! AAATAAATTCAAAAATCCAT+GGG + chr1_2:67449107-67449126 None:intergenic 15.0%
!! TAAATAAATTCAAAAATCCA+TGG + chr1_2:67449108-67449127 None:intergenic 15.0%
!!! ATGATTTATGAAATTTTGAA+TGG + chr1_2:67449202-67449221 None:intergenic 15.0%
!!! TAAGAATCATAAATTTTCTA+TGG + chr1_2:67449232-67449251 None:intergenic 15.0%
!! TAATTTACTTAACTCATTAT+CGG - chr1_2:67449435-67449454 Msa0086710:intron 15.0%
!!! TAAATTTTCATATGAATAAC+TGG - chr1_2:67449683-67449702 Msa0086710:intron 15.0%
!! CTTAAATAAAAGAGAATATT+TGG + chr1_2:67449955-67449974 None:intergenic 15.0%
!! AGTATTAATTAGAGTTATAA+AGG - chr1_2:67450126-67450145 Msa0086710:intron 15.0%
!! GTATTAATTAGAGTTATAAA+GGG - chr1_2:67450127-67450146 Msa0086710:intron 15.0%
!! TATTAATTAGAGTTATAAAG+GGG - chr1_2:67450128-67450147 Msa0086710:intron 15.0%
!!! ACATTTTTTTCTATATTCAT+AGG + chr1_2:67450705-67450724 None:intergenic 15.0%
!!! CATTTTTTTTCTATATTCAT+AGG + chr1_2:67450926-67450945 None:intergenic 15.0%
!!! TCTTAACAATTCTTTTTTTT+TGG + chr1_2:67450970-67450989 None:intergenic 15.0%
!! AAAAAAAAAAGAGATTCAAA+AGG - chr1_2:67451011-67451030 Msa0086710:intron 15.0%
!! AAAAAAAAAGAGATTCAAAA+GGG - chr1_2:67451012-67451031 Msa0086710:intron 15.0%
!! TAGTAATTATTTGGTAAAAA+AGG - chr1_2:67451115-67451134 Msa0086710:intron 15.0%
!! TCACAATATTATTAATTATC+TGG - chr1_2:67451147-67451166 Msa0086710:intron 15.0%
!! TATTAATTATCTGGTAAAAA+AGG - chr1_2:67451156-67451175 Msa0086710:intron 15.0%
!! TAACTATTTGGTAAAAAAAA+TGG - chr1_2:67451198-67451217 Msa0086710:intron 15.0%
!!! ATTAAATCTTATGTTTTTCA+AGG - chr1_2:67451423-67451442 Msa0086710:intron 15.0%
!!! TTGTATGTTGATTTTATTTT+TGG + chr1_2:67451578-67451597 None:intergenic 15.0%
!!! AACCTTTTCTATTAAAAAAA+AGG - chr1_2:67451649-67451668 Msa0086710:intron 15.0%
!!! TTCCTTTTTTTTAATAGAAA+AGG + chr1_2:67451654-67451673 None:intergenic 15.0%
!!! ATTTTGAGAAAAAGAAAAAT+AGG + chr1_2:67451756-67451775 None:intergenic 15.0%
!!! AATAAATAAGGGTATTATAA+TGG + chr1_2:67451822-67451841 None:intergenic 15.0%
!!! AACAAAATTTTGACTTTTAA+AGG + chr1_2:67452039-67452058 None:intergenic 15.0%
!!! CACCTTTTTATTATTTTTTA+AGG - chr1_2:67452345-67452364 Msa0086710:intron 15.0%
!! TCCCTTAAAAAATAATAAAA+AGG + chr1_2:67452350-67452369 None:intergenic 15.0%
!! ACGTACTATTATTAAAAAAT+GGG + chr1_2:67452551-67452570 None:intergenic 15.0%
!! TACGTACTATTATTAAAAAA+TGG + chr1_2:67452552-67452571 None:intergenic 15.0%
!!! TTTTAATAATAGTACGTAAT+AGG - chr1_2:67452554-67452573 Msa0086710:intron 15.0%
!! TGTCTTAAATAAATAGTTAT+TGG + chr1_2:67452632-67452651 None:intergenic 15.0%
!!! TTTATTTAAGACACTATTAT+AGG - chr1_2:67452639-67452658 Msa0086710:intron 15.0%
!!! TTATTTAAGACACTATTATA+GGG - chr1_2:67452640-67452659 Msa0086710:intron 15.0%
!!! GTATATGTAATGTTTTTTTT+AGG - chr1_2:67452967-67452986 Msa0086710:CDS 15.0%
!! TATATTGGAAGAAGAAAAAT+TGG + chr1_2:67447974-67447993 None:intergenic 20.0%
!!! GTGTAAATTTATAGTTTGTT+TGG - chr1_2:67448698-67448717 Msa0086710:intron 20.0%
!!! AAATTTATAGTTTGTTTGGA+TGG - chr1_2:67448702-67448721 Msa0086710:intron 20.0%
!!! AATTTATAGTTTGTTTGGAT+GGG - chr1_2:67448703-67448722 Msa0086710:intron 20.0%
!! TGATATATTAATGTCTTTGA+AGG - chr1_2:67448865-67448884 Msa0086710:intron 20.0%
!!! TGTTTAAAAGTTGAAGTTTT+TGG + chr1_2:67449167-67449186 None:intergenic 20.0%
!! ACATCATAAAACATATTCTA+TGG + chr1_2:67449261-67449280 None:intergenic 20.0%
!! AATTTACTTAACTCATTATC+GGG - chr1_2:67449436-67449455 Msa0086710:intron 20.0%
!!! GAAAGTTTTTTTTTTAAGGA+AGG - chr1_2:67449854-67449873 Msa0086710:intron 20.0%
!! AAAGTGGAATATATTGAATT+GGG - chr1_2:67450091-67450110 Msa0086710:intron 20.0%
!! TATAAATGACTCAGATATTA+CGG - chr1_2:67450212-67450231 Msa0086710:intron 20.0%
!! TAAACAAAAATTTCATGTCA+AGG + chr1_2:67450571-67450590 None:intergenic 20.0%
!! AATTGTTAAGAGATTCTAAA+GGG - chr1_2:67450753-67450772 Msa0086710:intron 20.0%
!! TTAGACTAAAATCATTGTTA+AGG - chr1_2:67450787-67450806 Msa0086710:intron 20.0%
!! TAAATTTGATACGTTTCAAA+GGG - chr1_2:67450859-67450878 Msa0086710:intron 20.0%
!! AATTGTTAAGAGATTCTAAA+GGG - chr1_2:67450753-67450772 Msa0086710:intron 20.0%
!! AAAAATAATAAATGCTGCAT+TGG + chr1_2:67451797-67451816 None:intergenic 20.0%
!! TCCACTAATTACAATTAATA+AGG - chr1_2:67451864-67451883 Msa0086710:intron 20.0%
!! CCACTAATTACAATTAATAA+GGG - chr1_2:67451865-67451884 Msa0086710:intron 20.0%
!!! ATTAATTGTGTTGATTTTGA+TGG + chr1_2:67451917-67451936 None:intergenic 20.0%
!! TCTATAGAAAGTTTCTAAAT+TGG - chr1_2:67452063-67452082 Msa0086710:intron 20.0%
!! AATTGAATGCACAAAATTTA+AGG - chr1_2:67452468-67452487 Msa0086710:intron 20.0%
!!! CATTTAGACATTTTATTAGA+GGG + chr1_2:67452602-67452621 None:intergenic 20.0%
!!! TCATTTAGACATTTTATTAG+AGG + chr1_2:67452603-67452622 None:intergenic 20.0%
!!! TATTTAAGACACTATTATAG+GGG - chr1_2:67452641-67452660 Msa0086710:intron 20.0%
!!! TATTTTATTTAAAAGTGGTG+TGG - chr1_2:67452700-67452719 Msa0086710:intron 20.0%
!!! ATTTTATTTAAAAGTGGTGT+GGG - chr1_2:67452701-67452720 Msa0086710:intron 20.0%
!! GTTATTGTTGAACTATATAT+AGG - chr1_2:67453202-67453221 Msa0086710:five_prime_UTR 20.0%
!! TTATGAATGCAAAACTAAAA+GGG + chr1_2:67453373-67453392 None:intergenic 20.0%
!! TTTATGAATGCAAAACTAAA+AGG + chr1_2:67453374-67453393 None:intergenic 20.0%
!! TGTTTGTAGAAAGCTTTATA+AGG + chr1_2:67448054-67448073 None:intergenic 25.0%
!!! AGGTTGATAGAATAGAAATA+TGG + chr1_2:67448134-67448153 None:intergenic 25.0%
! ACGATTAGTGATGATAAAAA+TGG + chr1_2:67448192-67448211 None:intergenic 25.0%
! TTAATTAAACTTACAAGCAC+CGG + chr1_2:67448620-67448639 None:intergenic 25.0%
!! AATGTCTTTGAAGGATATTA+TGG - chr1_2:67448874-67448893 Msa0086710:intron 25.0%
!!! AACGTTTTTTCTTGATTACT+GGG - chr1_2:67448911-67448930 Msa0086710:intron 25.0%
!!! TAAAAGTTGAAGTTTTTGGT+AGG + chr1_2:67449163-67449182 None:intergenic 25.0%
! GGTTATTAATGAGAAATCTT+AGG - chr1_2:67449341-67449360 Msa0086710:intron 25.0%
! TATTAATGAGAAATCTTAGG+TGG - chr1_2:67449344-67449363 Msa0086710:intron 25.0%
! ATTAATGAGAAATCTTAGGT+GGG - chr1_2:67449345-67449364 Msa0086710:intron 25.0%
! TAAAGTTGTTACCTTATTGA+AGG + chr1_2:67449382-67449401 None:intergenic 25.0%
! TTATTATATGGATATGGACA+TGG + chr1_2:67449495-67449514 None:intergenic 25.0%
! TGTCCATATCCATATAATAA+TGG - chr1_2:67449495-67449514 Msa0086710:intron 25.0%
! GTCCATATCCATATAATAAT+GGG - chr1_2:67449496-67449515 Msa0086710:intron 25.0%
! TACCCATTATTATATGGATA+TGG + chr1_2:67449501-67449520 None:intergenic 25.0%
! TTTGACTACCCATTATTATA+TGG + chr1_2:67449507-67449526 None:intergenic 25.0%
! AGAAATGACTCAATTAATTC+GGG + chr1_2:67449991-67450010 None:intergenic 25.0%
! GAGAAATGACTCAATTAATT+CGG + chr1_2:67449992-67450011 None:intergenic 25.0%
!! TAAGTGCTTTTGTTAAGTAT+TGG - chr1_2:67450065-67450084 Msa0086710:intron 25.0%
! CAAAGTGGAATATATTGAAT+TGG - chr1_2:67450090-67450109 Msa0086710:intron 25.0%
!! AAAAGTGAAAGTGTACAAAA+TGG - chr1_2:67450272-67450291 Msa0086710:intron 25.0%
! ATGCCACAATTAAAAATGAA+GGG + chr1_2:67450545-67450564 None:intergenic 25.0%
! AATGCCACAATTAAAAATGA+AGG + chr1_2:67450546-67450565 None:intergenic 25.0%
!!! AAATTTTAATCCAACAGTAG+AGG - chr1_2:67450608-67450627 Msa0086710:intron 25.0%
! TAAATTTGACACGTTTCAAA+TGG - chr1_2:67450658-67450677 Msa0086710:intron 25.0%
! TCAAATGGAATTAACTTTGA+TGG - chr1_2:67450673-67450692 Msa0086710:intron 25.0%
! GAATTGTTAAGAGATTCTAA+AGG - chr1_2:67450752-67450771 Msa0086710:intron 25.0%
! CTAAATTTGATACGTTTCAA+AGG - chr1_2:67450858-67450877 Msa0086710:intron 25.0%
! GAATTGTTAAGAGATTCTAA+AGG - chr1_2:67450752-67450771 Msa0086710:intron 25.0%
! ATTTAATCCACAATAACGTA+TGG + chr1_2:67451347-67451366 None:intergenic 25.0%
! AAATCAAAACCAGCATTAAT+TGG - chr1_2:67451621-67451640 Msa0086710:intron 25.0%
! GGATGAAGTTCAATAAATAA+GGG + chr1_2:67451833-67451852 None:intergenic 25.0%
! TGGATGAAGTTCAATAAATA+AGG + chr1_2:67451834-67451853 None:intergenic 25.0%
! CCCTTATTAATTGTAATTAG+TGG + chr1_2:67451868-67451887 None:intergenic 25.0%
! CTCTAAATAATAGTCGTTTA+AGG + chr1_2:67451965-67451984 None:intergenic 25.0%
! AAACGACTATTATTTAGAGA+CGG - chr1_2:67451966-67451985 Msa0086710:intron 25.0%
!! TTTAAGATCTAGTACCTAAT+GGG + chr1_2:67452803-67452822 None:intergenic 25.0%
!! ATTTAAGATCTAGTACCTAA+TGG + chr1_2:67452804-67452823 None:intergenic 25.0%
! ATTAGGTACTAGATCTTAAA+TGG - chr1_2:67452803-67452822 Msa0086710:intron 25.0%
! ATACAACAAAGATACATAGT+CGG + chr1_2:67452951-67452970 None:intergenic 25.0%
! AAATGTGAAAATGTTCTTGT+AGG - chr1_2:67452992-67453011 Msa0086710:exon 25.0%
! TGAACTATATATAGGTATGT+CGG - chr1_2:67453210-67453229 Msa0086710:five_prime_UTR 25.0%
! AATTTCTTCAGTTGAGATTT+GGG + chr1_2:67453349-67453368 None:intergenic 25.0%
! TAATTTCTTCAGTTGAGATT+TGG + chr1_2:67453350-67453369 None:intergenic 25.0%
! AATGATCAACACCATATTTA+TGG - chr1_2:67453399-67453418 Msa0086710:five_prime_UTR 25.0%
!!! TATTGATTTACCTGGATTAA+CGG + chr1_2:67453553-67453572 None:intergenic 25.0%
TTGATCCATATTCTGTTTGA+TGG - chr1_2:67447894-67447913 Msa0086710:CDS 30.0%
!! ATGAGAAAGGAATTTTGAGA+GGG + chr1_2:67447951-67447970 None:intergenic 30.0%
GAAGAAAAATTGGATGAGAA+AGG + chr1_2:67447964-67447983 None:intergenic 30.0%
!! TTGATTTGGTCATGAAAAAG+TGG + chr1_2:67448244-67448263 None:intergenic 30.0%
GATTTGGAAAGAAACGTAAA+CGG + chr1_2:67448302-67448321 None:intergenic 30.0%
! ATGGTAAATCACAATGGATT+TGG + chr1_2:67448318-67448337 None:intergenic 30.0%
GAAGAAATGGTAAATCACAA+TGG + chr1_2:67448324-67448343 None:intergenic 30.0%
! CTCTTTTGTATTGAGAGAAT+TGG - chr1_2:67448432-67448451 Msa0086710:intron 30.0%
ATTGTTGTATCTAATCACAG+TGG - chr1_2:67448522-67448541 Msa0086710:intron 30.0%
!!! GAACGTTTTTTCTTGATTAC+TGG - chr1_2:67448910-67448929 Msa0086710:intron 30.0%
TGATGTGAATGAAGTGAAAA+TGG - chr1_2:67449275-67449294 Msa0086710:intron 30.0%
CGGTAAAATTTCCTTCAATA+AGG - chr1_2:67449368-67449387 Msa0086710:intron 30.0%
! TTTTGTCATTCAAAGCAACA+AGG + chr1_2:67449643-67449662 None:intergenic 30.0%
AGAAAGTTAATCCATTGTGT+TGG - chr1_2:67449780-67449799 Msa0086710:intron 30.0%
! TGGTCTAGTGATATTGTTTT+TGG - chr1_2:67449800-67449819 Msa0086710:intron 30.0%
AAATAAAGGAGAGAGAAAAG+TGG - chr1_2:67450039-67450058 Msa0086710:intron 30.0%
AATGGTGAGTGAAAAAGTTA+CGG - chr1_2:67450290-67450309 Msa0086710:intron 30.0%
! TTTTGTAGCGTTTGAAAAAG+TGG - chr1_2:67450326-67450345 Msa0086710:intron 30.0%
TTTGTAGCGTTTGAAAAAGT+GGG - chr1_2:67450327-67450346 Msa0086710:intron 30.0%
GTTAAAGTGTGATGATTGAT+TGG - chr1_2:67450374-67450393 Msa0086710:intron 30.0%
ATGAACAGTGAATATTGTGA+AGG + chr1_2:67450504-67450523 None:intergenic 30.0%
!! TTCCCCTTCATTTTTAATTG+TGG - chr1_2:67450539-67450558 Msa0086710:intron 30.0%
TGCCACAATTAAAAATGAAG+GGG + chr1_2:67450544-67450563 None:intergenic 30.0%
TCAAATGGAACTAACTTTGA+TGG - chr1_2:67450894-67450913 Msa0086710:intron 30.0%
! AAGAGATTCTAAAGGGAATT+TGG - chr1_2:67450760-67450779 Msa0086710:intron 30.0%
!! TAGACTAAAAGCATTGTTCA+AGG - chr1_2:67451047-67451066 Msa0086710:intron 30.0%
ATAGTTACCATACGTTATTG+TGG - chr1_2:67451337-67451356 Msa0086710:intron 30.0%
GGTTATATACCAATTAATGC+TGG + chr1_2:67451633-67451652 None:intergenic 30.0%
AAGAGACAATTATTGTGAGA+CGG + chr1_2:67451731-67451750 None:intergenic 30.0%
AATTAGTGGAGTAGTTAAGT+TGG + chr1_2:67451854-67451873 None:intergenic 30.0%
!!! GTTGTCATTGTGTTTTTTGT+GGG + chr1_2:67452668-67452687 None:intergenic 30.0%
!!! AGTTGTCATTGTGTTTTTTG+TGG + chr1_2:67452669-67452688 None:intergenic 30.0%
CAATGTGGGAAAAAAATATG+GGG + chr1_2:67452774-67452793 None:intergenic 30.0%
CCAATGTGGGAAAAAAATAT+GGG + chr1_2:67452775-67452794 None:intergenic 30.0%
!!! CCATATTTTTTTCCCACATT+GGG - chr1_2:67452773-67452792 Msa0086710:CDS 30.0%
ATTAAACCATCCACATTGTA+GGG + chr1_2:67452835-67452854 None:intergenic 30.0%
TATTAAACCATCCACATTGT+AGG + chr1_2:67452836-67452855 None:intergenic 30.0%
TCAATTTCAATGTCTTTGCT+TGG + chr1_2:67453267-67453286 None:intergenic 30.0%
! TGATATCTGAAATGACAAAG+TGG - chr1_2:67453284-67453303 Msa0086710:five_prime_UTR 30.0%
ACCAAATATGAGAACTTCAA+GGG - chr1_2:67453507-67453526 Msa0086710:five_prime_UTR 30.0%
ATCCATATTCTGTTTGATGG+TGG - chr1_2:67447897-67447916 Msa0086710:CDS 35.0%
! TCCATATTCTGTTTGATGGT+GGG - chr1_2:67447898-67447917 Msa0086710:CDS 35.0%
!! AAAGGAATTTTGAGAGGGAA+GGG + chr1_2:67447946-67447965 None:intergenic 35.0%
! GATGAGAAAGGAATTTTGAG+AGG + chr1_2:67447952-67447971 None:intergenic 35.0%
! AAAAGAAAGAGAAGCGTGAA+AGG + chr1_2:67448096-67448115 None:intergenic 35.0%
! AAATCGAGGCTTCATTGATT+TGG + chr1_2:67448258-67448277 None:intergenic 35.0%
AATCCACGTAATTGAAATCG+AGG + chr1_2:67448272-67448291 None:intergenic 35.0%
GAAAGAAACGTAAACGGAAA+TGG + chr1_2:67448296-67448315 None:intergenic 35.0%
TTGAGAGAATTGGAAACAAG+TGG - chr1_2:67448442-67448461 Msa0086710:intron 35.0%
TTCTGTTACGATGAAATTCG+CGG - chr1_2:67448489-67448508 Msa0086710:intron 35.0%
! CAATTGGCTTCTACAATTTG+AGG - chr1_2:67448773-67448792 Msa0086710:intron 35.0%
TGGGTTTGAATCTACAATCT+AGG - chr1_2:67448930-67448949 Msa0086710:intron 35.0%
GGGTTTGAATCTACAATCTA+GGG - chr1_2:67448931-67448950 Msa0086710:intron 35.0%
TACAATCTAGGGATGTCAAT+GGG - chr1_2:67448942-67448961 Msa0086710:intron 35.0%
GGTATCATATTTATCCAACG+GGG + chr1_2:67449004-67449023 None:intergenic 35.0%
GGGTATCATATTTATCCAAC+GGG + chr1_2:67449005-67449024 None:intergenic 35.0%
CGGGTATCATATTTATCCAA+CGG + chr1_2:67449006-67449025 None:intergenic 35.0%
ACTTAACTCATTATCGGGTA+TGG - chr1_2:67449441-67449460 Msa0086710:intron 35.0%
CTTAACTCATTATCGGGTAT+GGG - chr1_2:67449442-67449461 Msa0086710:intron 35.0%
TTTGATTGTATCCATACCCA+CGG + chr1_2:67449471-67449490 None:intergenic 35.0%
ATATCACTAGACCAACACAA+TGG + chr1_2:67449794-67449813 None:intergenic 35.0%
ATGACTCAATTAATTCGGGA+CGG + chr1_2:67449987-67450006 None:intergenic 35.0%
!! TGTTAAGTATTGGTGCAAAG+TGG - chr1_2:67450075-67450094 Msa0086710:intron 35.0%
AAATGACTCAGATATTACGG+AGG - chr1_2:67450215-67450234 Msa0086710:intron 35.0%
AATGACTCAGATATTACGGA+GGG - chr1_2:67450216-67450235 Msa0086710:intron 35.0%
TTGTAGCGTTTGAAAAAGTG+GGG - chr1_2:67450328-67450347 Msa0086710:intron 35.0%
AAGTGTGATGATTGATTGGT+TGG - chr1_2:67450378-67450397 Msa0086710:intron 35.0%
ACAGTGAATATTGTGAAGGA+CGG + chr1_2:67450500-67450519 None:intergenic 35.0%
TTTAATCCAACAGTAGAGGT+TGG - chr1_2:67450612-67450631 Msa0086710:intron 35.0%
GGGAACTAACTTTGATCAAA+TGG - chr1_2:67450879-67450898 Msa0086710:intron 35.0%
AAATGATAACATATGCCCCA+AGG - chr1_2:67451673-67451692 Msa0086710:intron 35.0%
AATGATAACATATGCCCCAA+GGG - chr1_2:67451674-67451693 Msa0086710:intron 35.0%
ATTTCTTAACATGTGCCCTT+GGG + chr1_2:67451692-67451711 None:intergenic 35.0%
AATTTCTTAACATGTGCCCT+TGG + chr1_2:67451693-67451712 None:intergenic 35.0%
GACTATTATTTAGAGACGGA+GGG - chr1_2:67451970-67451989 Msa0086710:intron 35.0%
AACATGTCGCATATGAAGTT+TGG - chr1_2:67452169-67452188 Msa0086710:intron 35.0%
! CATTTAAGACCTCAAAGTTG+AGG + chr1_2:67452307-67452326 None:intergenic 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr1_2:67452370-67452389 Msa0086710:intron 35.0%
CTTCTAAACTTGTGCCTTAA+GGG + chr1_2:67452387-67452406 None:intergenic 35.0%
ACTTCTAAACTTGTGCCTTA+AGG + chr1_2:67452388-67452407 None:intergenic 35.0%
TAGGTACTCAACCATTTCAA+TGG - chr1_2:67452573-67452592 Msa0086710:intron 35.0%
!! TTAACACCCCCATTTTTAAG+TGG + chr1_2:67452728-67452747 None:intergenic 35.0%
!!! CCCATATTTTTTTCCCACAT+TGG - chr1_2:67452772-67452791 Msa0086710:CDS 35.0%
CCCAATGTGGGAAAAAAATA+TGG + chr1_2:67452776-67452795 None:intergenic 35.0%
TTCAATGTCTTTGCTTGGAT+TGG + chr1_2:67453262-67453281 None:intergenic 35.0%
!! AGTTATTTCAGTTAGCTCTG+TGG - chr1_2:67453321-67453340 Msa0086710:five_prime_UTR 35.0%
CATATTTATGGTACTTGCCA+GGG - chr1_2:67453411-67453430 Msa0086710:five_prime_UTR 35.0%
CAATGACTTGAAATCATGCT+TGG - chr1_2:67453446-67453465 Msa0086710:five_prime_UTR 35.0%
GACCAAATATGAGAACTTCA+AGG - chr1_2:67453506-67453525 Msa0086710:five_prime_UTR 35.0%
ACCCTTGAAGTTCTCATATT+TGG + chr1_2:67453511-67453530 None:intergenic 35.0%
!! AGAGCAGATATTGATTTACC+TGG + chr1_2:67453561-67453580 None:intergenic 35.0%
ACCCACCATCAAACAGAATA+TGG + chr1_2:67447902-67447921 None:intergenic 40.0%
!! GAAAGGAATTTTGAGAGGGA+AGG + chr1_2:67447947-67447966 None:intergenic 40.0%
! CACGCTCAATCTAAGGTAAA+AGG + chr1_2:67448154-67448173 None:intergenic 40.0%
TAAAACGCACGCTCAATCTA+AGG + chr1_2:67448161-67448180 None:intergenic 40.0%
AAGCCTCGATTTCAATTACG+TGG - chr1_2:67448266-67448285 Msa0086710:intron 40.0%
GTTGTATCTAATCACAGTGG+AGG - chr1_2:67448525-67448544 Msa0086710:intron 40.0%
TTGGAGCTGGTAAAGACAAT+TGG - chr1_2:67448757-67448776 Msa0086710:intron 40.0%
CTACAATCTAGGGATGTCAA+TGG - chr1_2:67448941-67448960 Msa0086710:intron 40.0%
ATCATACTATCCGTACCCAT+GGG + chr1_2:67448970-67448989 None:intergenic 40.0%
TATCATACTATCCGTACCCA+TGG + chr1_2:67448971-67448990 None:intergenic 40.0%
ATCATATTTATCCAACGGGG+CGG + chr1_2:67449001-67449020 None:intergenic 40.0%
AGGTATCCATGGGTATTCAT+GGG - chr1_2:67449079-67449098 Msa0086710:intron 40.0%
AATGAGAAATCTTAGGTGGG+CGG - chr1_2:67449348-67449367 Msa0086710:intron 40.0%
TTGATTGTATCCATACCCAC+GGG + chr1_2:67449470-67449489 None:intergenic 40.0%
AATACCCGTTATTATACCCG+TGG - chr1_2:67449525-67449544 Msa0086710:intron 40.0%
GTATCCACGGGTATAATAAC+GGG + chr1_2:67449532-67449551 None:intergenic 40.0%
GGTATCCACGGGTATAATAA+CGG + chr1_2:67449533-67449552 None:intergenic 40.0%
CAACAAGGAGATTGTAGTAG+GGG + chr1_2:67449628-67449647 None:intergenic 40.0%
GCAACAAGGAGATTGTAGTA+GGG + chr1_2:67449629-67449648 None:intergenic 40.0%
AGCAACAAGGAGATTGTAGT+AGG + chr1_2:67449630-67449649 None:intergenic 40.0%
! TGAAAAAGTTACGGAGTGTC+AGG - chr1_2:67450299-67450318 Msa0086710:intron 40.0%
! GAAAAAGTTACGGAGTGTCA+GGG - chr1_2:67450300-67450319 Msa0086710:intron 40.0%
TGTAGCGTTTGAAAAAGTGG+GGG - chr1_2:67450329-67450348 Msa0086710:intron 40.0%
!!! GTGGTGTATTTTTGGGTTGT+GGG - chr1_2:67450351-67450370 Msa0086710:intron 40.0%
!!! TGGTGTATTTTTGGGTTGTG+GGG - chr1_2:67450352-67450371 Msa0086710:intron 40.0%
AGTGAATATTGTGAAGGACG+GGG + chr1_2:67450498-67450517 None:intergenic 40.0%
CAGTGAATATTGTGAAGGAC+GGG + chr1_2:67450499-67450518 None:intergenic 40.0%
TTAGATCCAACCTCTACTGT+TGG + chr1_2:67450621-67450640 None:intergenic 40.0%
TTTCTTAACATGTGCCCTTG+GGG + chr1_2:67451691-67451710 None:intergenic 40.0%
GACAATTATTGTGAGACGGA+GGG + chr1_2:67451727-67451746 None:intergenic 40.0%
AGACAATTATTGTGAGACGG+AGG + chr1_2:67451728-67451747 None:intergenic 40.0%
CGACTATTATTTAGAGACGG+AGG - chr1_2:67451969-67451988 Msa0086710:intron 40.0%
! CTTGTTATCTTGTGCCCTTA+GGG + chr1_2:67452105-67452124 None:intergenic 40.0%
! TCTTGTTATCTTGTGCCCTT+AGG + chr1_2:67452106-67452125 None:intergenic 40.0%
!! AGTGTTAACTTGTGCGCTTA+GGG + chr1_2:67452527-67452546 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCGCTT+AGG + chr1_2:67452528-67452547 None:intergenic 40.0%
TTAGAGGGTCTCCATTGAAA+TGG + chr1_2:67452587-67452606 None:intergenic 40.0%
GTGTGGGTCCACTTAAAAAT+GGG - chr1_2:67452717-67452736 Msa0086710:CDS 40.0%
TGTGGGTCCACTTAAAAATG+GGG - chr1_2:67452718-67452737 Msa0086710:CDS 40.0%
ATGGTAAAGACCCTACAATG+TGG - chr1_2:67452822-67452841 Msa0086710:intron 40.0%
TAAAGACCCTACAATGTGGA+TGG - chr1_2:67452826-67452845 Msa0086710:intron 40.0%
CCTGGCAAGTACCATAAATA+TGG + chr1_2:67453413-67453432 None:intergenic 40.0%
CCATATTTATGGTACTTGCC+AGG - chr1_2:67453410-67453429 Msa0086710:five_prime_UTR 40.0%
!! TGTAATTTGTTGAACCCCTG+CGG + chr1_2:67453485-67453504 None:intergenic 40.0%
AACAATGCTACCGTTAATCC+AGG - chr1_2:67453540-67453559 Msa0086710:five_prime_UTR 40.0%
! GGTGTCGTATTGAGAAGGAA+GGG + chr1_2:67448014-67448033 None:intergenic 45.0%
TGTTACGATGAAATTCGCGG+TGG - chr1_2:67448492-67448511 Msa0086710:intron 45.0%
ATCTAATCACAGTGGAGGCA+TGG - chr1_2:67448530-67448549 Msa0086710:intron 45.0%
GTTAACAACGCACGTGAAAC+CGG - chr1_2:67448598-67448617 Msa0086710:intron 45.0%
TTGTTTGGATGGGAGCTTAC+CGG - chr1_2:67448713-67448732 Msa0086710:intron 45.0%
TATCACCTGGACAGAGGATT+TGG - chr1_2:67448738-67448757 Msa0086710:intron 45.0%
TCATATTTATCCAACGGGGC+GGG + chr1_2:67449000-67449019 None:intergenic 45.0%
! GAGGTATCCATGGGTATTCA+TGG - chr1_2:67449078-67449097 Msa0086710:intron 45.0%
! AAGTGGGGGTGGTGTATTTT+TGG - chr1_2:67450343-67450362 Msa0086710:intron 45.0%
! AGTGGGGGTGGTGTATTTTT+GGG - chr1_2:67450344-67450363 Msa0086710:intron 45.0%
!!! GGTGGTGTATTTTTGGGTTG+TGG - chr1_2:67450350-67450369 Msa0086710:intron 45.0%
AATATTGTGAAGGACGGGGT+TGG + chr1_2:67450494-67450513 None:intergenic 45.0%
ATTCCTTAACCTGTGCCCTA+AGG - chr1_2:67452087-67452106 Msa0086710:intron 45.0%
TTCCTTAACCTGTGCCCTAA+GGG - chr1_2:67452088-67452107 Msa0086710:intron 45.0%
CCAACGACATGACAACATGT+GGG + chr1_2:67452206-67452225 None:intergenic 45.0%
ACCAACGACATGACAACATG+TGG + chr1_2:67452207-67452226 None:intergenic 45.0%
CAAACATCAACCCACACATG+TGG + chr1_2:67452255-67452274 None:intergenic 45.0%
TCCATTGGAGATGGTCTTCT+CGG + chr1_2:67452281-67452300 None:intergenic 45.0%
TCAAAGTTGAGGCTCTCCAT+TGG + chr1_2:67452296-67452315 None:intergenic 45.0%
AATGGAGAGCCTCAACTTTG+AGG - chr1_2:67452295-67452314 Msa0086710:intron 45.0%
GGTGTGGGTCCACTTAAAAA+TGG - chr1_2:67452716-67452735 Msa0086710:CDS 45.0%
GTGGGTCCACTTAAAAATGG+GGG - chr1_2:67452719-67452738 Msa0086710:CDS 45.0%
ATGGGGTCTCTTAAGACTCA+GGG + chr1_2:67452757-67452776 None:intergenic 45.0%
TATGGGGTCTCTTAAGACTC+AGG + chr1_2:67452758-67452777 None:intergenic 45.0%
! CTAATGGGTACTCCCAATGT+GGG + chr1_2:67452788-67452807 None:intergenic 45.0%
ATTTATGGTACTTGCCAGGG+AGG - chr1_2:67453414-67453433 Msa0086710:five_prime_UTR 45.0%
!! GTAATTTGTTGAACCCCTGC+GGG + chr1_2:67453484-67453503 None:intergenic 45.0%
!! TAATTAATTATTTATTGTTA+TGG - chr1_2:67448218-67448237 Msa0086710:intron 5.0%
!!! TTTTTGAATTTATTTATTTT+TGG - chr1_2:67449112-67449131 Msa0086710:intron 5.0%
!!! ATTATTATTTTATTTAAAAG+TGG - chr1_2:67452695-67452714 Msa0086710:intron 5.0%
!!! GATAATAAATAATAATTTTT+TGG + chr1_2:67453042-67453061 None:intergenic 5.0%
!! CGGTGTCGTATTGAGAAGGA+AGG + chr1_2:67448015-67448034 None:intergenic 50.0%
! AAGGAGTGTAGTGTAGTGCG+CGG + chr1_2:67448035-67448054 None:intergenic 50.0%
GGATGTCAATGGGTACCCAT+GGG - chr1_2:67448952-67448971 Msa0086710:intron 50.0%
TCAATGGGTACCCATGGGTA+CGG - chr1_2:67448957-67448976 Msa0086710:intron 50.0%
ATGGATACCTCAATACCCGC+GGG + chr1_2:67449069-67449088 None:intergenic 50.0%
CATGGATACCTCAATACCCG+CGG + chr1_2:67449070-67449089 None:intergenic 50.0%
!! GCGGGTATTGAGGTATCCAT+GGG - chr1_2:67449069-67449088 Msa0086710:intron 50.0%
TGGGTACCCATGAATACCCA+TGG + chr1_2:67449088-67449107 None:intergenic 50.0%
TGGGTATTCATGGGTACCCA+TGG - chr1_2:67449088-67449107 Msa0086710:intron 50.0%
GTAGCTAAACGGGTATCCAC+GGG + chr1_2:67449544-67449563 None:intergenic 50.0%
GGTAGCTAAACGGGTATCCA+CGG + chr1_2:67449545-67449564 None:intergenic 50.0%
TAAAATCCGTCACGGGCATG+GGG + chr1_2:67449570-67449589 None:intergenic 50.0%
GTAAAATCCGTCACGGGCAT+GGG + chr1_2:67449571-67449590 None:intergenic 50.0%
GCAAAAATACCCATGCCCAC+GGG + chr1_2:67449603-67449622 None:intergenic 50.0%
GGCAAAAATACCCATGCCCA+CGG + chr1_2:67449604-67449623 None:intergenic 50.0%
CAAGGAGATTGTAGTAGGGG+TGG + chr1_2:67449625-67449644 None:intergenic 50.0%
AGCGTTTGAAAAAGTGGGGG+TGG - chr1_2:67450332-67450351 Msa0086710:intron 50.0%
CCCACATGTTGTCATGTCGT+TGG - chr1_2:67452203-67452222 Msa0086710:intron 50.0%
CATCAACCCACACATGTGGA+AGG + chr1_2:67452251-67452270 None:intergenic 50.0%
ACCGAGAAGACCATCTCCAA+TGG - chr1_2:67452277-67452296 Msa0086710:intron 50.0%
TTGAGGCTCTCCATTGGAGA+TGG + chr1_2:67452290-67452309 None:intergenic 50.0%
! CCTAATGGGTACTCCCAATG+TGG + chr1_2:67452789-67452808 None:intergenic 50.0%
!! CCACATTGGGAGTACCCATT+AGG - chr1_2:67452786-67452805 Msa0086710:intron 50.0%
GGAGTGTGTGTGGTGTGGAA+TGG + chr1_2:67447925-67447944 None:intergenic 55.0%
!! TGCGCGGTGTCGTATTGAGA+AGG + chr1_2:67448019-67448038 None:intergenic 55.0%
GAGCTTACCGGCATATCACC+TGG - chr1_2:67448725-67448744 Msa0086710:intron 55.0%
CCTCTGTCCAGGTGATATGC+CGG + chr1_2:67448735-67448754 None:intergenic 55.0%
CAGCTCCAAATCCTCTGTCC+AGG + chr1_2:67448746-67448765 None:intergenic 55.0%
! CTGGACAGAGGATTTGGAGC+TGG - chr1_2:67448744-67448763 Msa0086710:intron 55.0%
GGGATGTCAATGGGTACCCA+TGG - chr1_2:67448951-67448970 Msa0086710:intron 55.0%
TTTATCCAACGGGGCGGGAA+CGG + chr1_2:67448995-67449014 None:intergenic 55.0%
!! CGCGGGTATTGAGGTATCCA+TGG - chr1_2:67449068-67449087 Msa0086710:intron 55.0%
TTATCGGGTATGGGTACCCG+TGG - chr1_2:67449451-67449470 Msa0086710:intron 55.0%
TATCGGGTATGGGTACCCGT+GGG - chr1_2:67449452-67449471 Msa0086710:intron 55.0%
GGTAAAATCCGTCACGGGCA+TGG + chr1_2:67449572-67449591 None:intergenic 55.0%
CCGTGGGTAAAATCCGTCAC+GGG + chr1_2:67449577-67449596 None:intergenic 55.0%
!!! CCCGTGACGGATTTTACCCA+CGG - chr1_2:67449574-67449593 Msa0086710:intron 55.0%
CCCGTGGGTAAAATCCGTCA+CGG + chr1_2:67449578-67449597 None:intergenic 55.0%
!!! CCGTGACGGATTTTACCCAC+GGG - chr1_2:67449575-67449594 Msa0086710:intron 55.0%
! ATTTTACCCACGGGTACCCG+TGG - chr1_2:67449584-67449603 Msa0086710:intron 55.0%
! TTTTACCCACGGGTACCCGT+GGG - chr1_2:67449585-67449604 Msa0086710:intron 55.0%
AAAGTCTAGGCGGAGACGAC+AGG + chr1_2:67450438-67450457 None:intergenic 55.0%
TGCCCTTAGGGCACAGGTTA+AGG + chr1_2:67452093-67452112 None:intergenic 55.0%
ATCTTGTGCCCTTAGGGCAC+AGG + chr1_2:67452099-67452118 None:intergenic 55.0%
ACGTCCACCTTCCACATGTG+TGG - chr1_2:67452241-67452260 Msa0086710:intron 55.0%
CGTCCACCTTCCACATGTGT+GGG - chr1_2:67452242-67452261 Msa0086710:intron 55.0%
CAACCCACACATGTGGAAGG+TGG + chr1_2:67452248-67452267 None:intergenic 55.0%
TATGGTACTTGCCAGGGAGG+TGG - chr1_2:67453417-67453436 Msa0086710:five_prime_UTR 55.0%
! GGAAGGGAGTGTGTGTGGTG+TGG + chr1_2:67447930-67447949 None:intergenic 60.0%
! GAGAGGGAAGGGAGTGTGTG+TGG + chr1_2:67447935-67447954 None:intergenic 60.0%
CCGGCATATCACCTGGACAG+AGG - chr1_2:67448732-67448751 Msa0086710:intron 60.0%
TTATCCAACGGGGCGGGAAC+GGG + chr1_2:67448994-67449013 None:intergenic 60.0%
! ACGAGGGTATGGGGCTGGTA+CGG + chr1_2:67449026-67449045 None:intergenic 60.0%
TACCAGCCCCATACCCTCGT+GGG - chr1_2:67449026-67449045 Msa0086710:intron 60.0%
! TGGGTACCCACGAGGGTATG+GGG + chr1_2:67449035-67449054 None:intergenic 60.0%
! GTGGGTACCCACGAGGGTAT+GGG + chr1_2:67449036-67449055 None:intergenic 60.0%
AGTGGGTACCCACGAGGGTA+TGG + chr1_2:67449037-67449056 None:intergenic 60.0%
!! CGCATAGTGGGTACCCACGA+GGG + chr1_2:67449042-67449061 None:intergenic 60.0%
CCTCGTGGGTACCCACTATG+CGG - chr1_2:67449040-67449059 Msa0086710:intron 60.0%
CTCGTGGGTACCCACTATGC+GGG - chr1_2:67449041-67449060 Msa0086710:intron 60.0%
GGTATGGGTACCCGTGGGTA+TGG - chr1_2:67449457-67449476 Msa0086710:intron 60.0%
CATGGGGCGGGTAGCTAAAC+GGG + chr1_2:67449554-67449573 None:intergenic 60.0%
GCATGGGGCGGGTAGCTAAA+CGG + chr1_2:67449555-67449574 None:intergenic 60.0%
TGCGCGCGCAAAAGTCTAGG+CGG + chr1_2:67450448-67450467 None:intergenic 60.0%
CAGTGCGCGCGCAAAAGTCT+AGG + chr1_2:67450451-67450470 None:intergenic 60.0%
GTACTTGCCAGGGAGGTGGT+TGG - chr1_2:67453421-67453440 Msa0086710:five_prime_UTR 60.0%
CATTGCACCAACCACCTCCC+TGG + chr1_2:67453431-67453450 None:intergenic 60.0%
! CGAGGGTATGGGGCTGGTAC+GGG + chr1_2:67449025-67449044 None:intergenic 65.0%
GTACCAGCCCCATACCCTCG+TGG - chr1_2:67449025-67449044 Msa0086710:intron 65.0%
! TACCCACGAGGGTATGGGGC+TGG + chr1_2:67449031-67449050 None:intergenic 65.0%
!! CCGCATAGTGGGTACCCACG+AGG + chr1_2:67449043-67449062 None:intergenic 65.0%
ACCCACTATGCGGGTACCCG+CGG - chr1_2:67449050-67449069 Msa0086710:intron 65.0%
AATCCGTCACGGGCATGGGG+CGG + chr1_2:67449567-67449586 None:intergenic 65.0%
! TGGAGAGAGCGCAAACCCGC+AGG - chr1_2:67453466-67453485 Msa0086710:five_prime_UTR 65.0%
! GGAGAGAGCGCAAACCCGCA+GGG - chr1_2:67453467-67453486 Msa0086710:five_prime_UTR 65.0%
! GAGAGAGCGCAAACCCGCAG+GGG - chr1_2:67453468-67453487 Msa0086710:five_prime_UTR 65.0%
GATACCCGTTCCCGCCCCGT+TGG - chr1_2:67448987-67449006 Msa0086710:intron 70.0%
CCCGCGGGTACCCGCATAGT+GGG + chr1_2:67449054-67449073 None:intergenic 70.0%
CCCACTATGCGGGTACCCGC+GGG - chr1_2:67449051-67449070 Msa0086710:intron 70.0%
ACCCGCGGGTACCCGCATAG+TGG + chr1_2:67449055-67449074 None:intergenic 70.0%
! GCGGGTACCCGCGGGTATTG+AGG - chr1_2:67449059-67449078 Msa0086710:intron 70.0%
TACCCGCCCCATGCCCGTGA+CGG - chr1_2:67449561-67449580 Msa0086710:intron 70.0%
ATCCGTCACGGGCATGGGGC+GGG + chr1_2:67449566-67449585 None:intergenic 70.0%
CCATGCCCACGGGTACCCGT+GGG + chr1_2:67449593-67449612 None:intergenic 70.0%
CCACGGGTACCCGTGGGCAT+GGG - chr1_2:67449591-67449610 Msa0086710:intron 70.0%
CCCACGGGTACCCGTGGGCA+TGG - chr1_2:67449590-67449609 Msa0086710:intron 75.0%
CCCATGCCCACGGGTACCCG+TGG + chr1_2:67449594-67449613 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 67447893 67453611 67447893 ID=Msa0086710;Name=Msa0086710
chr1_2 mRNA 67447893 67453611 67447893 ID=Msa0086710-mRNA-1;Parent=Msa0086710;Name=Msa0086710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=606|1|0.66|1|0.5|1|3|0|129
chr1_2 exon 67447893 67448072 67447893 ID=Msa0086710-mRNA-1:exon:22898;Parent=Msa0086710-mRNA-1
chr1_2 exon 67452710 67452792 67452710 ID=Msa0086710-mRNA-1:exon:22897;Parent=Msa0086710-mRNA-1
chr1_2 exon 67452879 67453611 67452879 ID=Msa0086710-mRNA-1:exon:22896;Parent=Msa0086710-mRNA-1
chr1_2 five_prime_UTR 67453006 67453611 67453006 ID=Msa0086710-mRNA-1:five_prime_utr;Parent=Msa0086710-mRNA-1
chr1_2 CDS 67452879 67453005 67452879 ID=Msa0086710-mRNA-1:cds;Parent=Msa0086710-mRNA-1
chr1_2 CDS 67452710 67452792 67452710 ID=Msa0086710-mRNA-1:cds;Parent=Msa0086710-mRNA-1
chr1_2 CDS 67447893 67448072 67447893 ID=Msa0086710-mRNA-1:cds;Parent=Msa0086710-mRNA-1
Gene Sequence

>Msa0086710

ATGAAATTCGCGGTGGCGTTCGCATTGTTGTATCTAATCACAGTGGAGGCATGGCGTGTTCACTCACAAGAACAGAAGATTTATGTGAACATGACGCTCGTTAACAACGCACGTGAAACCGGTGCTTTTTGTTTGGATGGGAGCTTACCGGCATATCACCTGGACAGAGGATTTGGAGCTGGTAAAGACAATTGGCTTCTACAATTTGAGGGAGGTGGTTGGTGCAATGACTTGAAATCATGCTTGGAGAGAGCGCAAACCCGCAGGGGTTCAACAAATTACATGACCAAATATGAGAACTTCAAGGGTATTTTAAGCAACAATGCTACCGTTAATCCAGGTAAATCAATATCTGCTCTGTTTTTTCTTTTCTTTTCATCTTTCATCTGA
Protein sequence

>Msa0086710

MKFAVAFALLYLITVEAWRVHSQEQKIYVNMTLVNNARETGAFCLDGSLPAYHLDRGFGAGKDNWLLQFEGGGWCNDLKSCLERAQTRRGSTNYMTKYENFKGILSNNATVNPGKSISALFFLFFSSFI*