AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0088040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088040 MtrunA17_Chr1g0205121 99.828 583 1 0 1 583 1 583 0.0 1210
Msa0088040 MtrunA17_Chr5g0394901 81.994 622 73 2 1 583 1 622 0.0 1025
Msa0088040 MtrunA17_Chr1g0185281 66.837 588 161 9 1 583 1 559 0.0 768
Msa0088040 MtrunA17_Chr7g0260081 65.517 580 168 8 1 577 1 551 0.0 743
Msa0088040 MtrunA17_Chr8g0355021 44.286 490 212 8 89 577 59 488 1.26e-130 391
Msa0088040 MtrunA17_Chr6g0466801 38.073 633 317 15 1 571 1 620 1.42e-124 380
Msa0088040 MtrunA17_Chr4g0054941 38.382 581 296 14 7 558 4 551 9.83e-121 369
Msa0088040 MtrunA17_Chr8g0382571 59.245 265 106 1 310 572 208 472 2.18e-110 338
Msa0088040 MtrunA17_Chr8g0382571 58.667 75 31 0 88 162 35 109 7.78e-22 99.0
Msa0088040 MtrunA17_Chr7g0263111 58.868 265 99 2 301 564 156 411 1.39e-104 323
Msa0088040 MtrunA17_Chr7g0263111 43.038 158 84 4 6 161 5 158 3.59e-27 114
Msa0088040 MtrunA17_Chr1g0201271 53.008 266 118 4 313 577 369 628 1.33e-91 295
Msa0088040 MtrunA17_Chr1g0201271 41.509 106 62 0 74 179 84 189 2.44e-19 92.0
Msa0088040 MtrunA17_Chr4g0054951 52.075 265 123 2 308 571 303 564 1.51e-88 285
Msa0088040 MtrunA17_Chr4g0054951 34.239 184 95 3 1 178 1 164 7.54e-25 108
Msa0088040 MtrunA17_Chr5g0400311 47.249 309 147 3 269 576 333 626 1.05e-86 281
Msa0088040 MtrunA17_Chr5g0400311 34.359 195 110 5 1 178 1 194 9.20e-27 115
Msa0088040 MtrunA17_Chr1g0165011 54.008 237 102 3 315 548 178 410 1.70e-83 268
Msa0088040 MtrunA17_Chr1g0165011 53.333 75 34 1 88 161 60 134 4.12e-18 87.4
Msa0088040 MtrunA17_Chr6g0479511 50.424 236 108 4 316 548 154 383 2.33e-83 265
Msa0088040 MtrunA17_Chr6g0479511 45.098 102 50 2 67 162 16 117 3.53e-19 90.1
Msa0088040 MtrunA17_Chr8g0375751 50.382 262 124 3 304 562 135 393 6.83e-81 260
Msa0088040 MtrunA17_Chr8g0375751 54.321 81 34 2 82 161 52 130 5.18e-19 89.7
Msa0088040 MtrunA17_Chr6g0452181 47.857 280 124 7 298 572 154 416 1.02e-78 255
Msa0088040 MtrunA17_Chr6g0452181 57.692 78 31 1 87 162 51 128 1.86e-18 88.2
Msa0088040 MtrunA17_Chr1g0189231 33.184 223 126 4 313 516 606 824 3.52e-29 123
Msa0088040 MtrunA17_Chr6g0488541 38.596 114 67 2 404 516 787 898 7.01e-16 81.6
Msa0088040 MtrunA17_Chr1g0154491 31.500 200 109 9 351 539 143 325 1.89e-14 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0088040 AT1G05470.2 71.930 627 122 9 1 583 1 617 0.0 884
Msa0088040 AT1G05470.1 71.930 627 122 9 1 583 1 617 0.0 884
Msa0088040 AT2G32010.2 74.833 600 128 9 1 583 1 594 0.0 884
Msa0088040 AT2G32010.1 74.833 600 128 9 1 583 1 594 0.0 884
Msa0088040 AT2G32010.4 74.833 600 128 9 1 583 1 594 0.0 884
Msa0088040 AT2G32010.3 74.833 600 128 9 1 583 1 594 0.0 884
Msa0088040 AT3G63240.2 61.263 586 181 12 1 581 1 545 0.0 686
Msa0088040 AT3G63240.1 61.263 586 181 12 1 581 1 545 0.0 686
Msa0088040 AT5G65090.2 44.877 488 232 7 88 572 6 459 8.12e-138 409
Msa0088040 AT5G65090.3 44.877 488 232 7 88 572 69 522 5.14e-137 409
Msa0088040 AT5G65090.1 44.877 488 232 7 88 572 69 522 5.14e-137 409
Msa0088040 AT5G04980.4 62.241 241 90 1 314 553 156 396 3.39e-105 323
Msa0088040 AT5G04980.2 62.241 241 90 1 314 553 220 460 2.51e-104 323
Msa0088040 AT5G04980.2 60.000 70 28 0 89 158 35 104 3.41e-20 94.4
Msa0088040 AT5G04980.1 62.241 241 90 1 314 553 191 431 2.63e-104 322
Msa0088040 AT5G04980.1 60.000 70 28 0 89 158 6 75 3.25e-20 94.0
Msa0088040 AT5G04980.3 62.241 241 90 1 314 553 191 431 2.63e-104 322
Msa0088040 AT5G04980.3 60.000 70 28 0 89 158 6 75 3.25e-20 94.0
Msa0088040 AT2G37440.2 59.839 249 96 2 315 563 113 357 1.35e-101 313
Msa0088040 AT2G37440.2 53.333 105 29 2 94 179 1 104 2.42e-23 102
Msa0088040 AT2G37440.1 59.839 249 96 2 315 563 194 438 1.26e-100 313
Msa0088040 AT2G37440.1 43.478 161 70 3 9 162 7 153 2.68e-28 119
Msa0088040 AT2G37440.3 59.839 249 96 2 315 563 194 438 1.26e-100 313
Msa0088040 AT2G37440.3 43.478 161 70 3 9 162 7 153 2.68e-28 119
Msa0088040 AT1G71710.2 51.550 258 119 3 315 571 399 651 3.53e-86 281
Msa0088040 AT1G71710.2 44.882 127 61 2 73 190 100 226 6.09e-24 107
Msa0088040 AT1G71710.1 51.550 258 119 3 315 571 408 660 3.74e-86 281
Msa0088040 AT1G71710.1 44.882 127 61 2 73 190 109 235 7.51e-24 106
Msa0088040 AT2G01900.1 56.652 233 96 3 316 547 154 382 1.18e-85 273
Msa0088040 AT2G01900.1 52.778 72 33 1 91 161 57 128 1.57e-16 82.4
Msa0088040 AT2G01900.3 56.652 233 96 3 316 547 162 390 1.40e-85 273
Msa0088040 AT2G01900.3 52.778 72 33 1 91 161 65 136 1.55e-16 82.8
Msa0088040 AT4G18010.1 50.575 261 125 2 304 563 378 635 7.16e-85 278
Msa0088040 AT4G18010.1 47.573 103 50 1 75 177 94 192 1.42e-24 108
Msa0088040 AT1G34120.5 49.213 254 123 4 315 566 182 431 3.72e-84 270
Msa0088040 AT1G34120.1 49.213 254 123 4 315 566 333 582 4.70e-82 268
Msa0088040 AT1G34120.1 58.442 77 32 0 87 163 96 172 8.32e-21 97.1
Msa0088040 AT1G34120.2 49.213 254 123 4 315 566 337 586 5.68e-82 268
Msa0088040 AT1G34120.2 58.442 77 32 0 87 163 100 176 8.65e-21 96.7
Msa0088040 AT2G01900.2 54.936 233 91 4 316 547 154 373 1.33e-80 259
Msa0088040 AT2G01900.2 52.778 72 33 1 91 161 57 128 1.52e-16 82.4
Msa0088040 AT1G34120.3 48.819 254 123 5 315 566 337 585 1.65e-79 262
Msa0088040 AT1G34120.3 58.442 77 32 0 87 163 100 176 8.77e-21 96.7
Msa0088040 AT4G18010.2 53.299 197 89 1 314 510 388 581 5.57e-67 228
Msa0088040 AT4G18010.2 47.573 103 50 1 75 177 94 192 1.08e-24 108
Msa0088040 AT1G34120.4 50.350 143 70 1 315 457 333 474 2.64e-45 167
Msa0088040 AT1G34120.4 58.442 77 32 0 87 163 96 172 4.96e-21 97.1
Msa0088040 AT2G43900.2 32.340 235 131 5 306 516 649 879 3.32e-31 130
Msa0088040 AT2G43900.1 32.340 235 131 5 306 516 649 879 3.40e-31 130
Msa0088040 AT1G65580.2 28.114 281 159 6 306 547 344 620 9.45e-29 122
Msa0088040 AT1G65580.1 28.114 281 159 6 306 547 610 886 1.07e-28 122
Msa0088040 AT1G05630.2 28.114 281 159 7 306 547 643 919 1.54e-28 122
Msa0088040 AT1G05630.3 30.493 223 127 5 318 516 655 873 2.30e-28 121
Msa0088040 AT2G31830.3 29.148 223 130 4 318 516 664 882 5.24e-27 117
Msa0088040 AT2G31830.2 29.148 223 130 4 318 516 664 882 5.95e-27 117
Msa0088040 AT2G31830.1 29.148 223 130 4 318 516 664 882 6.41e-27 117
Msa0088040 AT1G47510.4 33.673 196 102 8 351 539 87 261 2.33e-20 91.7
Msa0088040 AT1G47510.1 33.503 197 104 8 351 539 146 323 5.02e-20 92.0
Msa0088040 AT1G05630.1 33.333 150 82 4 414 547 806 953 1.51e-15 80.9
Msa0088040 AT1G47510.2 39.316 117 59 5 430 539 149 260 6.34e-13 69.7

Find 177 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCAAGTGTTTGTTAATT+TGG 0.087461 1_2:-69085938 None:intergenic
TTCTTGTTCTCTCTTATTTA+TGG 0.108009 1_2:+69081610 Msa0088040:five_prime_UTR
GACCTGTTTATGGCATATTT+TGG 0.108267 1_2:+69084816 Msa0088040:CDS
CAAGCAGATGCTGTTGTTTA+TGG 0.156723 1_2:+69082034 Msa0088040:CDS
TCAGACCACAGACCTGTTTA+TGG 0.185501 1_2:+69084806 Msa0088040:CDS
CCAAATTTGCATGCCTCTTT+TGG 0.186478 1_2:-69086453 None:intergenic
CCAAAAGAGGCATGCAAATT+TGG 0.194765 1_2:+69086453 Msa0088040:three_prime_UTR
CCAGCTGACATTTATGTTCT+TGG 0.223313 1_2:+69082649 Msa0088040:CDS
CATTTCCCATATACCGAAAA+AGG 0.224239 1_2:+69085755 Msa0088040:three_prime_UTR
GTAAAATCCCTATTGGTAAA+AGG 0.226517 1_2:-69085685 None:intergenic
CTAGTTTAAGATGGGGTTAT+AGG 0.246789 1_2:+69083329 Msa0088040:CDS
TCTTGTTCTCTCTTATTTAT+GGG 0.253835 1_2:+69081611 Msa0088040:five_prime_UTR
CACTTGTTGAGATGCAAAAT+TGG 0.283420 1_2:+69084339 Msa0088040:CDS
ATTAATGTAGTCGAATTATA+TGG 0.291644 1_2:+69084267 Msa0088040:intron
TTAGGAGGTGAGGTTGAATA+TGG 0.311008 1_2:+69082209 Msa0088040:intron
GCTCTCATGGTCAAAGAAAA+TGG 0.317894 1_2:+69081970 Msa0088040:intron
CTTCAAAGTAAAATCCCTAT+TGG 0.318880 1_2:-69085692 None:intergenic
CGCGAACATAAGACAATTGA+TGG 0.333710 1_2:-69084769 None:intergenic
ATAGAAAAGGTACTTGAATA+TGG 0.334170 1_2:-69084991 None:intergenic
ATGAAGTAGAAGTGTCAAAA+TGG 0.334431 1_2:+69081821 Msa0088040:exon
ATAGGTGTGACCGTATTCTA+TGG 0.336360 1_2:+69084732 Msa0088040:intron
TTTCCACTTTAACAATCATT+AGG 0.342462 1_2:+69085959 Msa0088040:three_prime_UTR
TCAGTATATCCACCGGAATA+TGG 0.344859 1_2:-69084920 None:intergenic
GCTATATCCATCTTCATTAG+AGG 0.346736 1_2:-69083491 None:intergenic
ATGGAGGGAGGGAGATAGAT+AGG 0.352569 1_2:+69085725 Msa0088040:three_prime_UTR
GATGGGATATCTAGGAAATA+AGG 0.356770 1_2:+69083645 Msa0088040:CDS
CCAGACAACTTCTAGTGGTT+GGG 0.363056 1_2:+69083207 Msa0088040:CDS
GAAGAACTTCTGCCATATTC+CGG 0.366341 1_2:+69084908 Msa0088040:CDS
GGCTTGGAGATTTGAATTAT+CGG 0.367306 1_2:+69084288 Msa0088040:CDS
CCACTACTTCCACTGGTTCC+AGG 0.367772 1_2:-69083079 None:intergenic
TCTACAACTGGCTGAGGAAT+TGG 0.371098 1_2:-69083118 None:intergenic
ACAAGGTTTCCTCGTGTTCA+TGG 0.380420 1_2:+69083923 Msa0088040:CDS
TAAAATCCCTATTGGTAAAA+GGG 0.382265 1_2:-69085684 None:intergenic
CAGCTGACATTTATGTTCTT+GGG 0.385507 1_2:+69082650 Msa0088040:CDS
TGAAATATCAGAAGCTGGCT+TGG 0.397750 1_2:+69081770 Msa0088040:five_prime_UTR
TTAGTTGAATACTTGTAAGT+TGG 0.398251 1_2:-69084534 None:intergenic
TTACCTAATGATTGTTAAAG+TGG 0.404122 1_2:-69085962 None:intergenic
AAGACATTAAACAATCTTCC+TGG 0.405151 1_2:+69083061 Msa0088040:CDS
GTAATTTGAGTGTAGATGAT+TGG 0.405806 1_2:+69082611 Msa0088040:CDS
TTATCGATGTGCAGAACTAT+AGG 0.428465 1_2:+69082463 Msa0088040:CDS
GTTGAATACTTGTAAGTTGG+AGG 0.434410 1_2:-69084531 None:intergenic
AAGAAGAAATTCTGATGTAA+TGG 0.434526 1_2:+69083886 Msa0088040:CDS
CTCTGCCCCTAGGATATTAC+CGG 0.436957 1_2:-69082999 None:intergenic
GCCCAAAATATGCCATAAAC+AGG 0.437361 1_2:-69084818 None:intergenic
CATCAATTGTCTTATGTTCG+CGG 0.437643 1_2:+69084770 Msa0088040:CDS
ACTTTGAAGAAATACTTTCA+TGG 0.442657 1_2:+69085706 Msa0088040:three_prime_UTR
ATCTGCAGTCATTTAACCTC+AGG 0.444290 1_2:+69083842 Msa0088040:CDS
ATAGGCCTAGTGACTATTCA+AGG 0.450945 1_2:+69083347 Msa0088040:CDS
ACTTTGATCCTAGTTTAAGA+TGG 0.450999 1_2:+69083320 Msa0088040:CDS
TTGAATGCCGGTAATATCCT+AGG 0.455415 1_2:+69082992 Msa0088040:CDS
CCCAACCACTAGAAGTTGTC+TGG 0.456209 1_2:-69083207 None:intergenic
GCAGGAGCACGAGTCAAGTT+AGG 0.456785 1_2:+69082409 Msa0088040:CDS
TGAAGTAGAAGTGTCAAAAT+GGG 0.458973 1_2:+69081822 Msa0088040:exon
TTTAACCTCAGGACAGAAAG+AGG 0.459850 1_2:+69083853 Msa0088040:CDS
AGAGGATTGATGGGATATCT+AGG 0.460059 1_2:+69083637 Msa0088040:CDS
TATTCACCGATGTCCACTAA+TGG 0.460168 1_2:+69083460 Msa0088040:CDS
CTTTGATCCTAGTTTAAGAT+GGG 0.463958 1_2:+69083321 Msa0088040:CDS
GAAATATCAGAAGCTGGCTT+GGG 0.468557 1_2:+69081771 Msa0088040:five_prime_UTR
AGTATTTAAGAAACCAAAAG+AGG 0.469725 1_2:+69086440 Msa0088040:three_prime_UTR
TGTAGTCGAATTATATGGCT+TGG 0.470661 1_2:+69084272 Msa0088040:intron
CATTGATCATATCATATGTT+AGG 0.474272 1_2:-69085897 None:intergenic
TTCTCAGTCAAGAATTGAGT+TGG 0.478219 1_2:+69084886 Msa0088040:CDS
GTGTGTTGGCAGAGGATTGA+TGG 0.485090 1_2:+69083627 Msa0088040:CDS
GTTTGATGAATTAGCTCTCA+TGG 0.485296 1_2:+69081957 Msa0088040:intron
AGTATAATTGAGTAAAGAAA+AGG 0.485984 1_2:+69086256 Msa0088040:three_prime_UTR
AGAATTCGTCTTTCTTCCAC+AGG 0.487504 1_2:+69083176 Msa0088040:CDS
GTAGCTACATGGAATGTAGC+TGG 0.489460 1_2:+69082574 Msa0088040:CDS
TCCAGACAACTTCTAGTGGT+TGG 0.491468 1_2:+69083206 Msa0088040:CDS
ATCACCCTCTTTCTGTCCTG+AGG 0.491996 1_2:-69083858 None:intergenic
CTACACTCAAATTACTTGGT+GGG 0.495753 1_2:-69082603 None:intergenic
TCATCTACACTCAAATTACT+TGG 0.496940 1_2:-69082607 None:intergenic
CTATAACCCCATCTTAAACT+AGG 0.499596 1_2:-69083328 None:intergenic
TCTGCATTCAGCTCTACAAC+TGG 0.501429 1_2:-69083130 None:intergenic
ATCACTGAAATATCAGAAGC+TGG 0.504559 1_2:+69081765 Msa0088040:five_prime_UTR
CCTCGTTGCAAGTAAGCAAA+TGG 0.505118 1_2:+69083537 Msa0088040:CDS
GAAGATGGATATAGCATGCC+AGG 0.505717 1_2:+69083499 Msa0088040:CDS
TGTGACCGTATTCTATGGTA+TGG 0.505817 1_2:+69084737 Msa0088040:CDS
CGCCTTTCACCCATACGGTA+AGG 0.509680 1_2:-69083570 None:intergenic
GTGAGGTTGAATATGGAAGT+AGG 0.510611 1_2:+69082216 Msa0088040:CDS
GGGAGGTGTAGAAACTTGCT+TGG 0.510701 1_2:+69081791 Msa0088040:five_prime_UTR
GGAGGTGTAGAAACTTGCTT+GGG 0.511972 1_2:+69081792 Msa0088040:five_prime_UTR
CAGACAACTTCTAGTGGTTG+GGG 0.516388 1_2:+69083208 Msa0088040:CDS
TGTGAACAGAGAAGTTTAGC+AGG 0.521211 1_2:+69082391 Msa0088040:intron
AACTTCTAGTGGTTGGGGAA+TGG 0.521620 1_2:+69083213 Msa0088040:CDS
CTTCTCCATACCATAGAATA+CGG 0.523333 1_2:-69084742 None:intergenic
AAAAGGTACTTGAATATGGA+TGG 0.524120 1_2:-69084987 None:intergenic
TGGGAATCTACCTTACCGTA+TGG 0.527175 1_2:+69083560 Msa0088040:CDS
AGAGGCAGATCCACCATTAG+TGG 0.529627 1_2:-69083473 None:intergenic
GGATCTGCCTCTAATGAAGA+TGG 0.530173 1_2:+69083484 Msa0088040:CDS
TCTCTCCTACCGCTCTGCTA+AGG 0.532367 1_2:+69084316 Msa0088040:CDS
TACCTTACCGTATGGGTGAA+AGG 0.532707 1_2:+69083568 Msa0088040:CDS
AAAGAGGCATGCAAATTTGG+CGG 0.537226 1_2:+69086456 Msa0088040:three_prime_UTR
AAGAGGCATGCAAATTTGGC+GGG 0.538372 1_2:+69086457 Msa0088040:three_prime_UTR
TATGCAGGTAGTTGATGAAG+AGG 0.542759 1_2:+69086070 Msa0088040:intron
GACCGAGTGACTATTCAAGA+TGG 0.545416 1_2:+69083386 Msa0088040:CDS
ACCGAGTGACTATTCAAGAT+GGG 0.545622 1_2:+69083387 Msa0088040:CDS
AACAAGGAAACAAATGAACT+TGG 0.546436 1_2:+69081721 Msa0088040:five_prime_UTR
AAGTGCCTTAGCAGAGCGGT+AGG 0.547515 1_2:-69084321 None:intergenic
CTTGCCCTTGAATAGTCACT+AGG 0.549171 1_2:-69083352 None:intergenic
AGGCAGTACCTTGAATGTCC+TGG 0.550535 1_2:-69083517 None:intergenic
CGGTAATATCCTAGGGGCAG+AGG 0.551227 1_2:+69083000 Msa0088040:CDS
TGAAGAAATACTTTCATGGA+GGG 0.552511 1_2:+69085710 Msa0088040:three_prime_UTR
TACACTCAAATTACTTGGTG+GGG 0.552545 1_2:-69082602 None:intergenic
GGCCATTGTCCTCTGCCCCT+AGG 0.552956 1_2:-69083009 None:intergenic
CAGTTCGCCTTTCACCCATA+CGG 0.553302 1_2:-69083575 None:intergenic
AGAGCTGAATGCAGATTTCG+AGG 0.555270 1_2:+69083138 Msa0088040:CDS
CTGTATCTTCGATCAACTTG+TGG 0.556535 1_2:-69083259 None:intergenic
TCTACACTCAAATTACTTGG+TGG 0.557302 1_2:-69082604 None:intergenic
TTCTGCACATCGATAATTCG+AGG 0.557659 1_2:-69082456 None:intergenic
ATATCAGAAGCTGGCTTGGG+AGG 0.558210 1_2:+69081774 Msa0088040:five_prime_UTR
GAGATAGTTCCGTTGAATGC+CGG 0.558858 1_2:+69082980 Msa0088040:CDS
CCCCATCTTGAATAGTCACT+CGG 0.558968 1_2:-69083388 None:intergenic
AAAGTATCGTGTGTTGGCAG+AGG 0.561574 1_2:+69083619 Msa0088040:CDS
CCAAGAACATAAATGTCAGC+TGG 0.562731 1_2:-69082649 None:intergenic
TAGAACAAGACAATGCAGTA+AGG 0.564196 1_2:-69081535 None:intergenic
ATAGCATGCCAGGACATTCA+AGG 0.564632 1_2:+69083509 Msa0088040:CDS
ATGTGATAATCTTACCAAGC+AGG 0.565102 1_2:-69084609 None:intergenic
CACAGACATACTAATTGAGA+TGG 0.566006 1_2:-69083798 None:intergenic
TTCAGCTCTACAACTGGCTG+AGG 0.570219 1_2:-69083124 None:intergenic
AAAATCCCTATTGGTAAAAG+GGG 0.570576 1_2:-69085683 None:intergenic
AGGATATTACCGGCATTCAA+CGG 0.574425 1_2:-69082989 None:intergenic
CCTGGAACCAGTGGAAGTAG+TGG 0.574999 1_2:+69083079 Msa0088040:CDS
AACAATCTTCCTGGAACCAG+TGG 0.576589 1_2:+69083070 Msa0088040:CDS
GGTGTAGAAACTTGCTTGGG+AGG 0.577053 1_2:+69081795 Msa0088040:five_prime_UTR
ACTAATTCAGATCGATACTC+AGG 0.577073 1_2:+69084552 Msa0088040:CDS
GTTTAGTTCAGTATATCCAC+CGG 0.581440 1_2:-69084927 None:intergenic
CGTTGCAAGTAAGCAAATGG+TGG 0.581706 1_2:+69083540 Msa0088040:CDS
ATAACATCCACTACTTCCAC+TGG 0.583435 1_2:-69083086 None:intergenic
TGAATGCCGGTAATATCCTA+GGG 0.584511 1_2:+69082993 Msa0088040:CDS
GGGAATCTACCTTACCGTAT+GGG 0.584626 1_2:+69083561 Msa0088040:CDS
CGTTCCATCCCACAAAAGCT+CGG 0.585491 1_2:-69084491 None:intergenic
ACTTGTGGTTGCACAAGTGA+AGG 0.585723 1_2:-69083244 None:intergenic
TCCGTGAGGTGACTCAACCT+CGG 0.588228 1_2:-69084840 None:intergenic
CGTATTCTATGGTATGGAGA+AGG 0.589620 1_2:+69084743 Msa0088040:CDS
AGAAATACTTTCATGGAGGG+AGG 0.590429 1_2:+69085713 Msa0088040:three_prime_UTR
GGTGAATATAAGACGGTACT+CGG 0.592451 1_2:-69083445 None:intergenic
GAAATACTTTCATGGAGGGA+GGG 0.592919 1_2:+69085714 Msa0088040:three_prime_UTR
AACATGAAAGTATCGTGTGT+TGG 0.596159 1_2:+69083613 Msa0088040:CDS
GCAGATGCTGTTGTTTATGG+AGG 0.601488 1_2:+69082037 Msa0088040:CDS
AAACTAGGATCAAAGTCACT+AGG 0.603336 1_2:-69083313 None:intergenic
TGATGATGACAATGGCCTTG+TGG 0.610519 1_2:+69083417 Msa0088040:CDS
TCACCGATGTCCACTAATGG+TGG 0.611075 1_2:+69083463 Msa0088040:CDS
AGCACTTTAAGAATAATGCA+TGG 0.611704 1_2:-69081586 None:intergenic
TTGTCTGGAACGATCGCCTG+TGG 0.616385 1_2:-69083192 None:intergenic
TGGAGGGAGGGAGATAGATA+GGG 0.617926 1_2:+69085726 Msa0088040:three_prime_UTR
TTTGATCCTAGTTTAAGATG+GGG 0.618992 1_2:+69083322 Msa0088040:CDS
GCCGAGGTTGAGTCACCTCA+CGG 0.620878 1_2:+69084839 Msa0088040:CDS
GAGCTGAATGCAGATTTCGA+GGG 0.621883 1_2:+69083139 Msa0088040:CDS
ATCCTAGGGGCAGAGGACAA+TGG 0.622061 1_2:+69083007 Msa0088040:CDS
TTGTCAACGCCATGAACACG+AGG 0.624907 1_2:-69083932 None:intergenic
CAGATTTCGAGGGATCAGCT+AGG 0.626550 1_2:+69083149 Msa0088040:CDS
ATAAATGTCAGCTGGTGGTG+AGG 0.628782 1_2:-69082641 None:intergenic
TTGAAGAAATACTTTCATGG+AGG 0.628992 1_2:+69085709 Msa0088040:three_prime_UTR
GTTGCAAGTAAGCAAATGGT+GGG 0.629979 1_2:+69083541 Msa0088040:CDS
GCACATCGATAATTCGAGGA+TGG 0.631089 1_2:-69082452 None:intergenic
AGCACGAGTCAAGTTAGGCG+AGG 0.638693 1_2:+69082414 Msa0088040:CDS
ATATGCCATAAACAGGTCTG+TGG 0.638756 1_2:-69084811 None:intergenic
AGGAGATGATATGCACCCCA+AGG 0.644054 1_2:+69084572 Msa0088040:CDS
GCACTCACAAGAAGAAAACA+AGG 0.646186 1_2:+69081705 Msa0088040:five_prime_UTR
AAGACTCTTACTCGTGCTCG+AGG 0.646419 1_2:-69083976 None:intergenic
TGTGTTGGCAGAGGATTGAT+GGG 0.651992 1_2:+69083628 Msa0088040:CDS
TAGGCCTAGTGACTATTCAA+GGG 0.652233 1_2:+69083348 Msa0088040:CDS
CGGTACTCGGTGAATCCACA+AGG 0.653743 1_2:-69083432 None:intergenic
TCGTTCCAGACAACTTCTAG+TGG 0.655270 1_2:+69083202 Msa0088040:CDS
CCGAGTGACTATTCAAGATG+GGG 0.655421 1_2:+69083388 Msa0088040:CDS
GAACTTCTGCCATATTCCGG+TGG 0.669521 1_2:+69084911 Msa0088040:CDS
TTAACCTCAGGACAGAAAGA+GGG 0.672945 1_2:+69083854 Msa0088040:CDS
AGAACATAAATGTCAGCTGG+TGG 0.673457 1_2:-69082646 None:intergenic
ACTGGCTGAGGAATTGGAGA+CGG 0.681528 1_2:-69083112 None:intergenic
GGACATCGGTGAATATAAGA+CGG 0.682139 1_2:-69083452 None:intergenic
GATCCACCATTAGTGGACAT+CGG 0.683487 1_2:-69083466 None:intergenic
CCATTTGCTTACTTGCAACG+AGG 0.692457 1_2:-69083537 None:intergenic
TCGTGCTCGAGGATTGTCTG+AGG 0.692935 1_2:-69083965 None:intergenic
CAACAAGTGCCTTAGCAGAG+CGG 0.698793 1_2:-69084325 None:intergenic
TGAGAATTCCAAGAACACCA+AGG 0.705085 1_2:+69081848 Msa0088040:CDS
GGTTCATCTGATGATGACAA+TGG 0.730250 1_2:+69083409 Msa0088040:CDS
GAATGCCGGTAATATCCTAG+GGG 0.756791 1_2:+69082994 Msa0088040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCAATATTTTATTATGT+TGG + chr1_2:69081892-69081911 Msa0088040:intron 10.0%
!! AATATTATAAAGAAAAGTTT+GGG - chr1_2:69085186-69085205 None:intergenic 10.0%
!!! TTTATTTTTCTTGGTAAAAT+TGG - chr1_2:69082501-69082520 None:intergenic 15.0%
!! ACCAAGAAAAATAAAATAAA+AGG + chr1_2:69082506-69082525 Msa0088040:intron 15.0%
!!! CTTTAGAGTAATTTATTTTA+TGG + chr1_2:69083711-69083730 Msa0088040:intron 15.0%
!!! TTATTTTCTAAAATCCTATT+AGG - chr1_2:69084637-69084656 None:intergenic 15.0%
!!! TGATCATTTTTTCTTTTTAT+AGG + chr1_2:69084714-69084733 Msa0088040:intron 15.0%
!! CAATATTATAAAGAAAAGTT+TGG - chr1_2:69085187-69085206 None:intergenic 15.0%
!! ATAATAATTGTCAAAAACCT+TGG - chr1_2:69081868-69081887 None:intergenic 20.0%
!! AACAATTCATATTCTTCAAT+TGG + chr1_2:69082112-69082131 Msa0088040:intron 20.0%
!! TATAGATTACTACAATTTCT+TGG + chr1_2:69082153-69082172 Msa0088040:intron 20.0%
!!! GCCTTTTATTTTATTTTTCT+TGG - chr1_2:69082510-69082529 None:intergenic 20.0%
!!! AGGGTTAAATATATTTTAGT+CGG - chr1_2:69082896-69082915 None:intergenic 20.0%
!! TCTAAAGAAAAACAAAAGTT+AGG - chr1_2:69083698-69083717 None:intergenic 20.0%
!!! TTATTTTATGGTGAAAATGA+TGG + chr1_2:69083723-69083742 Msa0088040:intron 20.0%
!! ATTAATGTAGTCGAATTATA+TGG + chr1_2:69084267-69084286 Msa0088040:intron 20.0%
!! TAACTTAAACAATAAACATG+AGG - chr1_2:69084415-69084434 None:intergenic 20.0%
!!! AACTAAACTTTTTCTAAAGA+AGG + chr1_2:69084942-69084961 Msa0088040:exon 20.0%
!!! ACTAAACTTTTTCTAAAGAA+GGG + chr1_2:69084943-69084962 Msa0088040:exon 20.0%
!!! TAATCATGATTTTAAGATAG+TGG + chr1_2:69085030-69085049 Msa0088040:intron 20.0%
!!! ACTTTTCTTTATAATATTGC+TGG + chr1_2:69085188-69085207 Msa0088040:intron 20.0%
!! ATCATATAGGTATATTCTTT+AGG - chr1_2:69085318-69085337 None:intergenic 20.0%
!!! ATTGATTTCATGAAATTGAA+AGG + chr1_2:69085499-69085518 Msa0088040:intron 20.0%
!!! AGTTTATAATCTCTAGTTTT+TGG + chr1_2:69085867-69085886 Msa0088040:intron 20.0%
!!! CAGTTATTTTTTTATTATGC+AGG + chr1_2:69086055-69086074 Msa0088040:intron 20.0%
!! AGTATAATTGAGTAAAGAAA+AGG + chr1_2:69086256-69086275 Msa0088040:three_prime_UTR 20.0%
!!! AATTTTTGTACTGATAAAGT+TGG + chr1_2:69086358-69086377 Msa0088040:three_prime_UTR 20.0%
!! TTCTTGTTCTCTCTTATTTA+TGG + chr1_2:69081610-69081629 Msa0088040:five_prime_UTR 25.0%
!! TCTTGTTCTCTCTTATTTAT+GGG + chr1_2:69081611-69081630 Msa0088040:five_prime_UTR 25.0%
! AAACAGTAACTGAGTTTATT+TGG - chr1_2:69082182-69082201 None:intergenic 25.0%
! ACTTGTGCAAATGTAAATAT+CGG - chr1_2:69082351-69082370 None:intergenic 25.0%
!!! TATACGGTTTTGTAATTTGT+AGG + chr1_2:69082821-69082840 Msa0088040:intron 25.0%
! AATTTGTAGGACTAAAAAGT+TGG + chr1_2:69082834-69082853 Msa0088040:intron 25.0%
!!! AATATGAGAGTTATTTTGGT+TGG + chr1_2:69083762-69083781 Msa0088040:intron 25.0%
! AAGAAGAAATTCTGATGTAA+TGG + chr1_2:69083886-69083905 Msa0088040:CDS 25.0%
! TGACTACTTATATTAGTGTT+TGG + chr1_2:69084063-69084082 Msa0088040:intron 25.0%
! ATTAACCATTAGTTATTCTG+TGG - chr1_2:69084124-69084143 None:intergenic 25.0%
! AACAATAAACATGAGGTTAA+TGG - chr1_2:69084408-69084427 None:intergenic 25.0%
! TTAGTTGAATACTTGTAAGT+TGG - chr1_2:69084537-69084556 None:intergenic 25.0%
! AAAAATGATCATGTCTTCAT+AGG - chr1_2:69084705-69084724 None:intergenic 25.0%
!!! ATAGAAAAGGTACTTGAATA+TGG - chr1_2:69084994-69085013 None:intergenic 25.0%
! ATGATTATGAGAGTCTATAA+GGG - chr1_2:69085017-69085036 None:intergenic 25.0%
! AAAAACAAAAAACTATGTGC+AGG + chr1_2:69085125-69085144 Msa0088040:intron 25.0%
! ACTAATGTCAAAGATCATAT+AGG - chr1_2:69085331-69085350 None:intergenic 25.0%
!! ACTTTTTACATAAGCTATCT+TGG - chr1_2:69085464-69085483 None:intergenic 25.0%
! TAAAATCCCTATTGGTAAAA+GGG - chr1_2:69085687-69085706 None:intergenic 25.0%
!! ACTTTGAAGAAATACTTTCA+TGG + chr1_2:69085706-69085725 Msa0088040:three_prime_UTR 25.0%
!! GAAGAAAAACTAACCTTTTT+CGG - chr1_2:69085771-69085790 None:intergenic 25.0%
! CAAAATTAGACAAAGAAATG+AGG - chr1_2:69085828-69085847 None:intergenic 25.0%
! AACTGAAAAAGATAAAGTGA+AGG - chr1_2:69085851-69085870 None:intergenic 25.0%
! CATTGATCATATCATATGTT+AGG - chr1_2:69085900-69085919 None:intergenic 25.0%
!! AACTCAAGTGTTTGTTAATT+TGG - chr1_2:69085941-69085960 None:intergenic 25.0%
! TTTCCACTTTAACAATCATT+AGG + chr1_2:69085959-69085978 Msa0088040:three_prime_UTR 25.0%
! TTACCTAATGATTGTTAAAG+TGG - chr1_2:69085965-69085984 None:intergenic 25.0%
!! AGCTCTTCTTTTTACTAATA+AGG + chr1_2:69086406-69086425 Msa0088040:three_prime_UTR 25.0%
! AGTATTTAAGAAACCAAAAG+AGG + chr1_2:69086440-69086459 Msa0088040:three_prime_UTR 25.0%
! AGCACTTTAAGAATAATGCA+TGG - chr1_2:69081589-69081608 None:intergenic 30.0%
AACAAGGAAACAAATGAACT+TGG + chr1_2:69081721-69081740 Msa0088040:five_prime_UTR 30.0%
!! ATGAAGTAGAAGTGTCAAAA+TGG + chr1_2:69081821-69081840 Msa0088040:exon 30.0%
!! TGAAGTAGAAGTGTCAAAAT+GGG + chr1_2:69081822-69081841 Msa0088040:exon 30.0%
! AGTTACTGTTTTCCTTCTTT+AGG + chr1_2:69082191-69082210 Msa0088040:intron 30.0%
ACAATCAAAAAGAGCAAAAC+AGG + chr1_2:69082266-69082285 Msa0088040:CDS 30.0%
AAAGGGAATGATTCAAGAAA+TGG - chr1_2:69082296-69082315 None:intergenic 30.0%
TACCATCAAGAACTTCAAAA+GGG - chr1_2:69082313-69082332 None:intergenic 30.0%
ATACCATCAAGAACTTCAAA+AGG - chr1_2:69082314-69082333 None:intergenic 30.0%
TCATCTACACTCAAATTACT+TGG - chr1_2:69082610-69082629 None:intergenic 30.0%
GTAATTTGAGTGTAGATGAT+TGG + chr1_2:69082611-69082630 Msa0088040:CDS 30.0%
TGAAGTTGGCATTAATTGTT+CGG + chr1_2:69082710-69082729 Msa0088040:intron 30.0%
GTCATTTGTAAAGCAGTTAA+GGG - chr1_2:69082915-69082934 None:intergenic 30.0%
! TGTCATTTGTAAAGCAGTTA+AGG - chr1_2:69082916-69082935 None:intergenic 30.0%
AAGACATTAAACAATCTTCC+TGG + chr1_2:69083061-69083080 Msa0088040:CDS 30.0%
ACTTTGATCCTAGTTTAAGA+TGG + chr1_2:69083320-69083339 Msa0088040:CDS 30.0%
! CTTTGATCCTAGTTTAAGAT+GGG + chr1_2:69083321-69083340 Msa0088040:CDS 30.0%
! TTTGATCCTAGTTTAAGATG+GGG + chr1_2:69083322-69083341 Msa0088040:CDS 30.0%
! GGCTAATATGAGAGTTATTT+TGG + chr1_2:69083758-69083777 Msa0088040:intron 30.0%
!!! TTATTTTGGTTGGATTTTGC+AGG + chr1_2:69083772-69083791 Msa0088040:intron 30.0%
!!! TATTTTGGTTGGATTTTGCA+GGG + chr1_2:69083773-69083792 Msa0088040:intron 30.0%
TGGAGATTCTTAAAAAGACA+AGG + chr1_2:69083906-69083925 Msa0088040:CDS 30.0%
AAGATCCACAGAATAACTAA+TGG + chr1_2:69084116-69084135 Msa0088040:intron 30.0%
TGTCATAGTATCAACAGTTA+AGG - chr1_2:69084447-69084466 None:intergenic 30.0%
TTGAGAATAGAGCAAAAAAG+AGG + chr1_2:69084468-69084487 Msa0088040:CDS 30.0%
AGATTATCACATCACCTAAT+AGG + chr1_2:69084620-69084639 Msa0088040:intron 30.0%
! ACCTGTTTATGGCATATTTT+GGG + chr1_2:69084817-69084836 Msa0088040:CDS 30.0%
!! AACTTTTTCTAAAGAAGGGA+AGG + chr1_2:69084947-69084966 Msa0088040:exon 30.0%
!! AAAAGGTACTTGAATATGGA+TGG - chr1_2:69084990-69085009 None:intergenic 30.0%
CATGATTATGAGAGTCTATA+AGG - chr1_2:69085018-69085037 None:intergenic 30.0%
AACATAATAGAGTGGAATAG+TGG + chr1_2:69085262-69085281 Msa0088040:intron 30.0%
AAAATCCCTATTGGTAAAAG+GGG - chr1_2:69085686-69085705 None:intergenic 30.0%
GTAAAATCCCTATTGGTAAA+AGG - chr1_2:69085688-69085707 None:intergenic 30.0%
CTTCAAAGTAAAATCCCTAT+TGG - chr1_2:69085695-69085714 None:intergenic 30.0%
TTGAAGAAATACTTTCATGG+AGG + chr1_2:69085709-69085728 Msa0088040:three_prime_UTR 30.0%
TGAAGAAATACTTTCATGGA+GGG + chr1_2:69085710-69085729 Msa0088040:three_prime_UTR 30.0%
!! TTTTTCGGTATATGGGAAAT+GGG - chr1_2:69085756-69085775 None:intergenic 30.0%
!!! ACTAACCTTTTTCGGTATAT+GGG - chr1_2:69085763-69085782 None:intergenic 30.0%
!!! AACTAACCTTTTTCGGTATA+TGG - chr1_2:69085764-69085783 None:intergenic 30.0%
!! ATGAGAGTTTTGATGTATAG+TGG + chr1_2:69086222-69086241 Msa0088040:three_prime_UTR 30.0%
TAGAACAAGACAATGCAGTA+AGG - chr1_2:69081538-69081557 None:intergenic 35.0%
ATCACTGAAATATCAGAAGC+TGG + chr1_2:69081765-69081784 Msa0088040:five_prime_UTR 35.0%
! GTTTGATGAATTAGCTCTCA+TGG + chr1_2:69081957-69081976 Msa0088040:intron 35.0%
! TACTGTTTTCCTTCTTTAGG+AGG + chr1_2:69082194-69082213 Msa0088040:intron 35.0%
!! TTGCTCTTTTTGATTGTGCA+TGG - chr1_2:69082263-69082282 None:intergenic 35.0%
!!! TTCCCTTTTGAAGTTCTTGA+TGG + chr1_2:69082308-69082327 Msa0088040:intron 35.0%
TGTGCAAATGTAAATATCGG+CGG - chr1_2:69082348-69082367 None:intergenic 35.0%
TTATCGATGTGCAGAACTAT+AGG + chr1_2:69082463-69082482 Msa0088040:CDS 35.0%
CTTGGTAAAATTGGAGAAGT+AGG - chr1_2:69082492-69082511 None:intergenic 35.0%
! TACACTCAAATTACTTGGTG+GGG - chr1_2:69082605-69082624 None:intergenic 35.0%
CTACACTCAAATTACTTGGT+GGG - chr1_2:69082606-69082625 None:intergenic 35.0%
TCTACACTCAAATTACTTGG+TGG - chr1_2:69082607-69082626 None:intergenic 35.0%
CAGCTGACATTTATGTTCTT+GGG + chr1_2:69082650-69082669 Msa0088040:CDS 35.0%
TTATAGTCTTCTCCTGAAGT+TGG + chr1_2:69082696-69082715 Msa0088040:intron 35.0%
GAACAATTAATGCCAACTTC+AGG - chr1_2:69082711-69082730 None:intergenic 35.0%
GAGACTTGTAAGTGTGTATA+GGG - chr1_2:69082784-69082803 None:intergenic 35.0%
AGAGACTTGTAAGTGTGTAT+AGG - chr1_2:69082785-69082804 None:intergenic 35.0%
! ACACTTACAAGTCTCTAAAG+AGG + chr1_2:69082789-69082808 Msa0088040:intron 35.0%
! CACTTACAAGTCTCTAAAGA+GGG + chr1_2:69082790-69082809 Msa0088040:intron 35.0%
AAAGAGGGACAACAAGTATA+CGG + chr1_2:69082805-69082824 Msa0088040:intron 35.0%
!! TAGGACTAAAAAGTTGGTAC+AGG + chr1_2:69082840-69082859 Msa0088040:intron 35.0%
!! AGGACTAAAAAGTTGGTACA+GGG + chr1_2:69082841-69082860 Msa0088040:intron 35.0%
TCTTGAAATCTGCAAGAGAA+AGG - chr1_2:69082962-69082981 None:intergenic 35.0%
!!! GATAAGAGCCAACCATTTTT+TGG - chr1_2:69083038-69083057 None:intergenic 35.0%
! GTTTGCGATCGTGTAATTTT+CGG + chr1_2:69083283-69083302 Msa0088040:CDS 35.0%
! ATCGTGTAATTTTCGGTAAC+AGG + chr1_2:69083290-69083309 Msa0088040:CDS 35.0%
AAACTAGGATCAAAGTCACT+AGG - chr1_2:69083316-69083335 None:intergenic 35.0%
CTATAACCCCATCTTAAACT+AGG - chr1_2:69083331-69083350 None:intergenic 35.0%
! CTAGTTTAAGATGGGGTTAT+AGG + chr1_2:69083329-69083348 Msa0088040:CDS 35.0%
GCTATATCCATCTTCATTAG+AGG - chr1_2:69083494-69083513 None:intergenic 35.0%
!! AACATGAAAGTATCGTGTGT+TGG + chr1_2:69083613-69083632 Msa0088040:CDS 35.0%
GATGGGATATCTAGGAAATA+AGG + chr1_2:69083645-69083664 Msa0088040:CDS 35.0%
AAATGATGGTTGCTTAGGAT+TGG + chr1_2:69083737-69083756 Msa0088040:intron 35.0%
!!! ATTTTGGTTGGATTTTGCAG+GGG + chr1_2:69083774-69083793 Msa0088040:intron 35.0%
CACAGACATACTAATTGAGA+TGG - chr1_2:69083801-69083820 None:intergenic 35.0%
TGTAGTCGAATTATATGGCT+TGG + chr1_2:69084272-69084291 Msa0088040:intron 35.0%
GGCTTGGAGATTTGAATTAT+CGG + chr1_2:69084288-69084307 Msa0088040:CDS 35.0%
! CACTTGTTGAGATGCAAAAT+TGG + chr1_2:69084339-69084358 Msa0088040:CDS 35.0%
! GTTGAATACTTGTAAGTTGG+AGG - chr1_2:69084534-69084553 None:intergenic 35.0%
ACTAATTCAGATCGATACTC+AGG + chr1_2:69084552-69084571 Msa0088040:CDS 35.0%
ATGTGATAATCTTACCAAGC+AGG - chr1_2:69084612-69084631 None:intergenic 35.0%
CTTCTCCATACCATAGAATA+CGG - chr1_2:69084745-69084764 None:intergenic 35.0%
CATCAATTGTCTTATGTTCG+CGG + chr1_2:69084770-69084789 Msa0088040:CDS 35.0%
! GACCTGTTTATGGCATATTT+TGG + chr1_2:69084816-69084835 Msa0088040:CDS 35.0%
! CTTTTCTTCAATTTTCCGTG+AGG - chr1_2:69084857-69084876 None:intergenic 35.0%
TTCTCAGTCAAGAATTGAGT+TGG + chr1_2:69084886-69084905 Msa0088040:CDS 35.0%
! GTTTAGTTCAGTATATCCAC+CGG - chr1_2:69084930-69084949 None:intergenic 35.0%
GAGTCTATAAGGGATAGAAA+AGG - chr1_2:69085007-69085026 None:intergenic 35.0%
! ACCAAAAGTACAAGATTCTG+AGG + chr1_2:69085215-69085234 Msa0088040:intron 35.0%
! GAGGCTGTAACTGATTTATA+TGG + chr1_2:69085234-69085253 Msa0088040:intron 35.0%
TGGACTTGAACATAATAGAG+TGG + chr1_2:69085254-69085273 Msa0088040:intron 35.0%
AAGCTATCTTGGAGAGTTAA+TGG - chr1_2:69085453-69085472 None:intergenic 35.0%
!!! CCATTTTCTGAAACAGTAAC+AGG - chr1_2:69085662-69085681 None:intergenic 35.0%
CCTGTTACTGTTTCAGAAAA+TGG + chr1_2:69085659-69085678 Msa0088040:intron 35.0%
!!! CTTTTTCGGTATATGGGAAA+TGG - chr1_2:69085757-69085776 None:intergenic 35.0%
CATTTCCCATATACCGAAAA+AGG + chr1_2:69085755-69085774 Msa0088040:three_prime_UTR 35.0%
GCACTCACAAGAAGAAAACA+AGG + chr1_2:69081705-69081724 Msa0088040:five_prime_UTR 40.0%
TGAAATATCAGAAGCTGGCT+TGG + chr1_2:69081770-69081789 Msa0088040:five_prime_UTR 40.0%
! GAAATATCAGAAGCTGGCTT+GGG + chr1_2:69081771-69081790 Msa0088040:five_prime_UTR 40.0%
TGAGAATTCCAAGAACACCA+AGG + chr1_2:69081848-69081867 Msa0088040:CDS 40.0%
!! GTCAAAAACCTTGGTGTTCT+TGG - chr1_2:69081859-69081878 None:intergenic 40.0%
GCTCTCATGGTCAAAGAAAA+TGG + chr1_2:69081970-69081989 Msa0088040:intron 40.0%
! CAAGCAGATGCTGTTGTTTA+TGG + chr1_2:69082034-69082053 Msa0088040:CDS 40.0%
!! TTTTCCTTCTTTAGGAGGTG+AGG + chr1_2:69082199-69082218 Msa0088040:intron 40.0%
TTAGGAGGTGAGGTTGAATA+TGG + chr1_2:69082209-69082228 Msa0088040:intron 40.0%
GTGAGGTTGAATATGGAAGT+AGG + chr1_2:69082216-69082235 Msa0088040:CDS 40.0%
TCTCTGTTCACAGCAATGAA+GGG - chr1_2:69082383-69082402 None:intergenic 40.0%
TTCTCTGTTCACAGCAATGA+AGG - chr1_2:69082384-69082403 None:intergenic 40.0%
TGTGAACAGAGAAGTTTAGC+AGG + chr1_2:69082391-69082410 Msa0088040:intron 40.0%
TTCTGCACATCGATAATTCG+AGG - chr1_2:69082459-69082478 None:intergenic 40.0%
! GCAGCATTTTTGTAGCTACA+TGG + chr1_2:69082563-69082582 Msa0088040:intron 40.0%
AGAACATAAATGTCAGCTGG+TGG - chr1_2:69082649-69082668 None:intergenic 40.0%
CCAAGAACATAAATGTCAGC+TGG - chr1_2:69082652-69082671 None:intergenic 40.0%
CCAGCTGACATTTATGTTCT+TGG + chr1_2:69082649-69082668 Msa0088040:CDS 40.0%
! GGGTAAGAATTGTTGCTTGA+CGG + chr1_2:69082670-69082689 Msa0088040:intron 40.0%
AGGATATTACCGGCATTCAA+CGG - chr1_2:69082992-69083011 None:intergenic 40.0%
TTGAATGCCGGTAATATCCT+AGG + chr1_2:69082992-69083011 Msa0088040:CDS 40.0%
TGAATGCCGGTAATATCCTA+GGG + chr1_2:69082993-69083012 Msa0088040:CDS 40.0%
ATAACATCCACTACTTCCAC+TGG - chr1_2:69083089-69083108 None:intergenic 40.0%
AGAATTCGTCTTTCTTCCAC+AGG + chr1_2:69083176-69083195 Msa0088040:CDS 40.0%
CTGTATCTTCGATCAACTTG+TGG - chr1_2:69083262-69083281 None:intergenic 40.0%
ATAGGCCTAGTGACTATTCA+AGG + chr1_2:69083347-69083366 Msa0088040:CDS 40.0%
TAGGCCTAGTGACTATTCAA+GGG + chr1_2:69083348-69083367 Msa0088040:CDS 40.0%
ACCGAGTGACTATTCAAGAT+GGG + chr1_2:69083387-69083406 Msa0088040:CDS 40.0%
! GGTTCATCTGATGATGACAA+TGG + chr1_2:69083409-69083428 Msa0088040:CDS 40.0%
GGTGAATATAAGACGGTACT+CGG - chr1_2:69083448-69083467 None:intergenic 40.0%
GGACATCGGTGAATATAAGA+CGG - chr1_2:69083455-69083474 None:intergenic 40.0%
TATTCACCGATGTCCACTAA+TGG + chr1_2:69083460-69083479 Msa0088040:CDS 40.0%
GTTGCAAGTAAGCAAATGGT+GGG + chr1_2:69083541-69083560 Msa0088040:CDS 40.0%
AGAGGATTGATGGGATATCT+AGG + chr1_2:69083637-69083656 Msa0088040:CDS 40.0%
GGTGAAAATGATGGTTGCTT+AGG + chr1_2:69083732-69083751 Msa0088040:intron 40.0%
ATCTGCAGTCATTTAACCTC+AGG + chr1_2:69083842-69083861 Msa0088040:CDS 40.0%
TTTAACCTCAGGACAGAAAG+AGG + chr1_2:69083853-69083872 Msa0088040:CDS 40.0%
TTAACCTCAGGACAGAAAGA+GGG + chr1_2:69083854-69083873 Msa0088040:CDS 40.0%
ATATGCACCCCAAGGAAAAA+AGG + chr1_2:69084580-69084599 Msa0088040:CDS 40.0%
!!! GTGTTCTCCTTTTTTCCTTG+GGG - chr1_2:69084590-69084609 None:intergenic 40.0%
!!! GGTGTTCTCCTTTTTTCCTT+GGG - chr1_2:69084591-69084610 None:intergenic 40.0%
!!! AGGTGTTCTCCTTTTTTCCT+TGG - chr1_2:69084592-69084611 None:intergenic 40.0%
AAAAAAGGAGAACACCTGCT+TGG + chr1_2:69084595-69084614 Msa0088040:CDS 40.0%
ATAGGTGTGACCGTATTCTA+TGG + chr1_2:69084732-69084751 Msa0088040:intron 40.0%
TGTGACCGTATTCTATGGTA+TGG + chr1_2:69084737-69084756 Msa0088040:CDS 40.0%
CGTATTCTATGGTATGGAGA+AGG + chr1_2:69084743-69084762 Msa0088040:CDS 40.0%
CGCGAACATAAGACAATTGA+TGG - chr1_2:69084772-69084791 None:intergenic 40.0%
ATATGCCATAAACAGGTCTG+TGG - chr1_2:69084814-69084833 None:intergenic 40.0%
GCCCAAAATATGCCATAAAC+AGG - chr1_2:69084821-69084840 None:intergenic 40.0%
GAAGAACTTCTGCCATATTC+CGG + chr1_2:69084908-69084927 Msa0088040:CDS 40.0%
TCAGTATATCCACCGGAATA+TGG - chr1_2:69084923-69084942 None:intergenic 40.0%
! GCCTCAGAATCTTGTACTTT+TGG - chr1_2:69085219-69085238 None:intergenic 40.0%
! AATGGTCCCCTTTTACCAAT+AGG + chr1_2:69085677-69085696 Msa0088040:three_prime_UTR 40.0%
! ATGGTCCCCTTTTACCAATA+GGG + chr1_2:69085678-69085697 Msa0088040:three_prime_UTR 40.0%
AGAAATACTTTCATGGAGGG+AGG + chr1_2:69085713-69085732 Msa0088040:three_prime_UTR 40.0%
GAAATACTTTCATGGAGGGA+GGG + chr1_2:69085714-69085733 Msa0088040:three_prime_UTR 40.0%
!! TATGCAGGTAGTTGATGAAG+AGG + chr1_2:69086070-69086089 Msa0088040:intron 40.0%
! ACTCAGCACAAGAGAGTTTT+TGG - chr1_2:69086316-69086335 None:intergenic 40.0%
! CCAAATTTGCATGCCTCTTT+TGG - chr1_2:69086456-69086475 None:intergenic 40.0%
! CCAAAAGAGGCATGCAAATT+TGG + chr1_2:69086453-69086472 Msa0088040:three_prime_UTR 40.0%
! GGAGGTGTAGAAACTTGCTT+GGG + chr1_2:69081792-69081811 Msa0088040:five_prime_UTR 45.0%
! GCAGATGCTGTTGTTTATGG+AGG + chr1_2:69082037-69082056 Msa0088040:CDS 45.0%
TCAACCTCACCTCCTAAAGA+AGG - chr1_2:69082206-69082225 None:intergenic 45.0%
GCACATCGATAATTCGAGGA+TGG - chr1_2:69082455-69082474 None:intergenic 45.0%
GTAGCTACATGGAATGTAGC+TGG + chr1_2:69082574-69082593 Msa0088040:CDS 45.0%
! ATAAATGTCAGCTGGTGGTG+AGG - chr1_2:69082644-69082663 None:intergenic 45.0%
GAGATAGTTCCGTTGAATGC+CGG + chr1_2:69082980-69082999 Msa0088040:CDS 45.0%
GAATGCCGGTAATATCCTAG+GGG + chr1_2:69082994-69083013 Msa0088040:CDS 45.0%
ACAATGGCCCTGCCAAAAAA+TGG + chr1_2:69083023-69083042 Msa0088040:CDS 45.0%
!!! GAGCCAACCATTTTTTGGCA+GGG - chr1_2:69083033-69083052 None:intergenic 45.0%
!!! AGAGCCAACCATTTTTTGGC+AGG - chr1_2:69083034-69083053 None:intergenic 45.0%
AACAATCTTCCTGGAACCAG+TGG + chr1_2:69083070-69083089 Msa0088040:CDS 45.0%
TCTACAACTGGCTGAGGAAT+TGG - chr1_2:69083121-69083140 None:intergenic 45.0%
TCTGCATTCAGCTCTACAAC+TGG - chr1_2:69083133-69083152 None:intergenic 45.0%
AGAGCTGAATGCAGATTTCG+AGG + chr1_2:69083138-69083157 Msa0088040:CDS 45.0%
GAGCTGAATGCAGATTTCGA+GGG + chr1_2:69083139-69083158 Msa0088040:CDS 45.0%
TCGTTCCAGACAACTTCTAG+TGG + chr1_2:69083202-69083221 Msa0088040:CDS 45.0%
TCCAGACAACTTCTAGTGGT+TGG + chr1_2:69083206-69083225 Msa0088040:CDS 45.0%
CCAGACAACTTCTAGTGGTT+GGG + chr1_2:69083207-69083226 Msa0088040:CDS 45.0%
CAGACAACTTCTAGTGGTTG+GGG + chr1_2:69083208-69083227 Msa0088040:CDS 45.0%
AACTTCTAGTGGTTGGGGAA+TGG + chr1_2:69083213-69083232 Msa0088040:CDS 45.0%
ACTTGTGGTTGCACAAGTGA+AGG - chr1_2:69083247-69083266 None:intergenic 45.0%
CTTGCCCTTGAATAGTCACT+AGG - chr1_2:69083355-69083374 None:intergenic 45.0%
GACCGAGTGACTATTCAAGA+TGG + chr1_2:69083386-69083405 Msa0088040:CDS 45.0%
CCCCATCTTGAATAGTCACT+CGG - chr1_2:69083391-69083410 None:intergenic 45.0%
CCGAGTGACTATTCAAGATG+GGG + chr1_2:69083388-69083407 Msa0088040:CDS 45.0%
! TGATGATGACAATGGCCTTG+TGG + chr1_2:69083417-69083436 Msa0088040:CDS 45.0%
! GATCCACCATTAGTGGACAT+CGG - chr1_2:69083469-69083488 None:intergenic 45.0%
GGATCTGCCTCTAATGAAGA+TGG + chr1_2:69083484-69083503 Msa0088040:CDS 45.0%
GAAGATGGATATAGCATGCC+AGG + chr1_2:69083499-69083518 Msa0088040:CDS 45.0%
ATAGCATGCCAGGACATTCA+AGG + chr1_2:69083509-69083528 Msa0088040:CDS 45.0%
CCATTTGCTTACTTGCAACG+AGG - chr1_2:69083540-69083559 None:intergenic 45.0%
CCTCGTTGCAAGTAAGCAAA+TGG + chr1_2:69083537-69083556 Msa0088040:CDS 45.0%
CGTTGCAAGTAAGCAAATGG+TGG + chr1_2:69083540-69083559 Msa0088040:CDS 45.0%
TGGGAATCTACCTTACCGTA+TGG + chr1_2:69083560-69083579 Msa0088040:CDS 45.0%
GGGAATCTACCTTACCGTAT+GGG + chr1_2:69083561-69083580 Msa0088040:CDS 45.0%
TACCTTACCGTATGGGTGAA+AGG + chr1_2:69083568-69083587 Msa0088040:CDS 45.0%
!! AAAGTATCGTGTGTTGGCAG+AGG + chr1_2:69083619-69083638 Msa0088040:CDS 45.0%
! TGTGTTGGCAGAGGATTGAT+GGG + chr1_2:69083628-69083647 Msa0088040:CDS 45.0%
ACAAGGTTTCCTCGTGTTCA+TGG + chr1_2:69083923-69083942 Msa0088040:CDS 45.0%
! AAAAAGAGGCCGAGCTTTTG+TGG + chr1_2:69084482-69084501 Msa0088040:CDS 45.0%
! AAAAGAGGCCGAGCTTTTGT+GGG + chr1_2:69084483-69084502 Msa0088040:CDS 45.0%
! CTTTTGTGGGATGGAACGAA+GGG + chr1_2:69084496-69084515 Msa0088040:CDS 45.0%
TCAGACCACAGACCTGTTTA+TGG + chr1_2:69084806-69084825 Msa0088040:CDS 45.0%
!! TTATGGCATATTTTGGGCCG+AGG + chr1_2:69084823-69084842 Msa0088040:CDS 45.0%
GACAGGGTCATGTTTGCTTA+GGG - chr1_2:69085152-69085171 None:intergenic 45.0%
AAACATGACCCTGTCCCAAA+AGG + chr1_2:69085157-69085176 Msa0088040:intron 45.0%
AACATGACCCTGTCCCAAAA+GGG + chr1_2:69085158-69085177 Msa0088040:intron 45.0%
! AAAAGTTTGGGCCCCCTTTT+GGG - chr1_2:69085174-69085193 None:intergenic 45.0%
!!! AAGATTTTTTAATTATTTTT+AGG + chr1_2:69086105-69086124 Msa0088040:three_prime_UTR 5.0%
!!! AGATTTTTTAATTATTTTTA+GGG + chr1_2:69086106-69086125 Msa0088040:three_prime_UTR 5.0%
!! ATATCAGAAGCTGGCTTGGG+AGG + chr1_2:69081774-69081793 Msa0088040:five_prime_UTR 50.0%
! GGGAGGTGTAGAAACTTGCT+TGG + chr1_2:69081791-69081810 Msa0088040:five_prime_UTR 50.0%
! GGTGTAGAAACTTGCTTGGG+AGG + chr1_2:69081795-69081814 Msa0088040:five_prime_UTR 50.0%
CTCTGCCCCTAGGATATTAC+CGG - chr1_2:69083002-69083021 None:intergenic 50.0%
TGGCCCTGCCAAAAAATGGT+TGG + chr1_2:69083027-69083046 Msa0088040:CDS 50.0%
ACTGGCTGAGGAATTGGAGA+CGG - chr1_2:69083115-69083134 None:intergenic 50.0%
TTCAGCTCTACAACTGGCTG+AGG - chr1_2:69083127-69083146 None:intergenic 50.0%
CAGATTTCGAGGGATCAGCT+AGG + chr1_2:69083149-69083168 Msa0088040:CDS 50.0%
CCCAACCACTAGAAGTTGTC+TGG - chr1_2:69083210-69083229 None:intergenic 50.0%
TCACCGATGTCCACTAATGG+TGG + chr1_2:69083463-69083482 Msa0088040:CDS 50.0%
AGAGGCAGATCCACCATTAG+TGG - chr1_2:69083476-69083495 None:intergenic 50.0%
AGGCAGTACCTTGAATGTCC+TGG - chr1_2:69083520-69083539 None:intergenic 50.0%
CAGTTCGCCTTTCACCCATA+CGG - chr1_2:69083578-69083597 None:intergenic 50.0%
! GTGTGTTGGCAGAGGATTGA+TGG + chr1_2:69083627-69083646 Msa0088040:CDS 50.0%
ATCACCCTCTTTCTGTCCTG+AGG - chr1_2:69083861-69083880 None:intergenic 50.0%
TTGTCAACGCCATGAACACG+AGG - chr1_2:69083935-69083954 None:intergenic 50.0%
AAGACTCTTACTCGTGCTCG+AGG - chr1_2:69083979-69083998 None:intergenic 50.0%
CAACAAGTGCCTTAGCAGAG+CGG - chr1_2:69084328-69084347 None:intergenic 50.0%
CGTTCCATCCCACAAAAGCT+CGG - chr1_2:69084494-69084513 None:intergenic 50.0%
! GCTTTTGTGGGATGGAACGA+AGG + chr1_2:69084495-69084514 Msa0088040:CDS 50.0%
AGGAGATGATATGCACCCCA+AGG + chr1_2:69084572-69084591 Msa0088040:CDS 50.0%
GAACTTCTGCCATATTCCGG+TGG + chr1_2:69084911-69084930 Msa0088040:CDS 50.0%
GGACAGGGTCATGTTTGCTT+AGG - chr1_2:69085153-69085172 None:intergenic 50.0%
ACATGACCCTGTCCCAAAAG+GGG + chr1_2:69085159-69085178 Msa0088040:intron 50.0%
! GAAAAGTTTGGGCCCCCTTT+TGG - chr1_2:69085175-69085194 None:intergenic 50.0%
ATGGAGGGAGGGAGATAGAT+AGG + chr1_2:69085725-69085744 Msa0088040:three_prime_UTR 50.0%
TGGAGGGAGGGAGATAGATA+GGG + chr1_2:69085726-69085745 Msa0088040:three_prime_UTR 50.0%
! GCAGGAGCACGAGTCAAGTT+AGG + chr1_2:69082409-69082428 Msa0088040:CDS 55.0%
AGCACGAGTCAAGTTAGGCG+AGG + chr1_2:69082414-69082433 Msa0088040:CDS 55.0%
CGGTAATATCCTAGGGGCAG+AGG + chr1_2:69083000-69083019 Msa0088040:CDS 55.0%
ATCCTAGGGGCAGAGGACAA+TGG + chr1_2:69083007-69083026 Msa0088040:CDS 55.0%
!! CCACTACTTCCACTGGTTCC+AGG - chr1_2:69083082-69083101 None:intergenic 55.0%
CCTGGAACCAGTGGAAGTAG+TGG + chr1_2:69083079-69083098 Msa0088040:CDS 55.0%
! TTGTCTGGAACGATCGCCTG+TGG - chr1_2:69083195-69083214 None:intergenic 55.0%
! CGGTACTCGGTGAATCCACA+AGG - chr1_2:69083435-69083454 None:intergenic 55.0%
CGCCTTTCACCCATACGGTA+AGG - chr1_2:69083573-69083592 None:intergenic 55.0%
TCGTGCTCGAGGATTGTCTG+AGG - chr1_2:69083968-69083987 None:intergenic 55.0%
TCTCTCCTACCGCTCTGCTA+AGG + chr1_2:69084316-69084335 Msa0088040:CDS 55.0%
AAGTGCCTTAGCAGAGCGGT+AGG - chr1_2:69084324-69084343 None:intergenic 55.0%
TCCGTGAGGTGACTCAACCT+CGG - chr1_2:69084843-69084862 None:intergenic 55.0%
CATGACCCTGTCCCAAAAGG+GGG + chr1_2:69085160-69085179 Msa0088040:intron 55.0%
! GAGGCCGAGCTTTTGTGGGA+TGG + chr1_2:69084487-69084506 Msa0088040:CDS 60.0%
GCCGAGGTTGAGTCACCTCA+CGG + chr1_2:69084839-69084858 Msa0088040:CDS 60.0%
!!! TTGGGCCCCCTTTTGGGACA+GGG - chr1_2:69085168-69085187 None:intergenic 60.0%
!!! TTTGGGCCCCCTTTTGGGAC+AGG - chr1_2:69085169-69085188 None:intergenic 60.0%
GGCCATTGTCCTCTGCCCCT+AGG - chr1_2:69083012-69083031 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 69081507 69086476 69081507 ID=Msa0088040;Name=Msa0088040
chr1_2 mRNA 69081507 69086476 69081507 ID=Msa0088040-mRNA-1;Parent=Msa0088040;Name=Msa0088040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=333|1|1|1|0.75|0.69|13|656|583
chr1_2 exon 69081507 69081869 69081507 ID=Msa0088040-mRNA-1:exon:23654;Parent=Msa0088040-mRNA-1
chr1_2 exon 69081971 69082058 69081971 ID=Msa0088040-mRNA-1:exon:23655;Parent=Msa0088040-mRNA-1
chr1_2 exon 69082213 69082287 69082213 ID=Msa0088040-mRNA-1:exon:23656;Parent=Msa0088040-mRNA-1
chr1_2 exon 69082400 69082484 69082400 ID=Msa0088040-mRNA-1:exon:23657;Parent=Msa0088040-mRNA-1
chr1_2 exon 69082567 69082671 69082567 ID=Msa0088040-mRNA-1:exon:23658;Parent=Msa0088040-mRNA-1
chr1_2 exon 69082973 69083666 69082973 ID=Msa0088040-mRNA-1:exon:23659;Parent=Msa0088040-mRNA-1
chr1_2 exon 69083794 69083987 69083794 ID=Msa0088040-mRNA-1:exon:23660;Parent=Msa0088040-mRNA-1
chr1_2 exon 69084277 69084385 69084277 ID=Msa0088040-mRNA-1:exon:23661;Parent=Msa0088040-mRNA-1
chr1_2 exon 69084468 69084616 69084468 ID=Msa0088040-mRNA-1:exon:23662;Parent=Msa0088040-mRNA-1
chr1_2 exon 69084736 69085000 69084736 ID=Msa0088040-mRNA-1:exon:23663;Parent=Msa0088040-mRNA-1
chr1_2 exon 69085675 69085776 69085675 ID=Msa0088040-mRNA-1:exon:23664;Parent=Msa0088040-mRNA-1
chr1_2 exon 69085869 69085980 69085869 ID=Msa0088040-mRNA-1:exon:23665;Parent=Msa0088040-mRNA-1
chr1_2 exon 69086077 69086476 69086077 ID=Msa0088040-mRNA-1:exon:23666;Parent=Msa0088040-mRNA-1
chr1_2 five_prime_UTR 69081507 69081839 69081507 ID=Msa0088040-mRNA-1:five_prime_utr;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69081840 69081869 69081840 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69081971 69082058 69081971 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69082213 69082287 69082213 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69082400 69082484 69082400 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69082567 69082671 69082567 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69082973 69083666 69082973 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69083794 69083987 69083794 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69084277 69084385 69084277 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69084468 69084616 69084468 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 CDS 69084736 69084958 69084736 ID=Msa0088040-mRNA-1:cds;Parent=Msa0088040-mRNA-1
chr1_2 three_prime_UTR 69084959 69085000 69084959 ID=Msa0088040-mRNA-1:three_prime_utr;Parent=Msa0088040-mRNA-1
chr1_2 three_prime_UTR 69085675 69085776 69085675 ID=Msa0088040-mRNA-1:three_prime_utr;Parent=Msa0088040-mRNA-1
chr1_2 three_prime_UTR 69085869 69085980 69085869 ID=Msa0088040-mRNA-1:three_prime_utr;Parent=Msa0088040-mRNA-1
chr1_2 three_prime_UTR 69086077 69086476 69086077 ID=Msa0088040-mRNA-1:three_prime_utr;Parent=Msa0088040-mRNA-1
Gene Sequence

>Msa0088040

ATGGGAGATGAGAATTCCAAGAACACCAAGCTCTCATGGTCAAAGAAAATGGTTAGAAAGTTTTTTAATTTCAAAAGCAAATGTGAAGATATTCAAGCAGATGCTGTTGTTTATGGAGGAGGTGAGGTTGAATATGGAAGTAGGAATAGCTTCTCTGAGAGAGAACCATGCACAATCAAAAAGAGCAAAACAGAGAAGTTTAGCAGGAGCACGAGTCAAGTTAGGCGAGGAAGAATGAATCTTGACCATCCTCGAATTATCGATGTGCAGAACTATAGCATTTTTGTAGCTACATGGAATGTAGCTGGAAGATCCCCACCAAGTAATTTGAGTGTAGATGATTGGCTTCATTCCTCACCACCAGCTGACATTTATGTTCTTGGATTTCAAGAGATAGTTCCGTTGAATGCCGGTAATATCCTAGGGGCAGAGGACAATGGCCCTGCCAAAAAATGGTTGGCTCTTATCAGAAAGACATTAAACAATCTTCCTGGAACCAGTGGAAGTAGTGGATGTTATACACCGTCTCCAATTCCTCAGCCAGTTGTAGAGCTGAATGCAGATTTCGAGGGATCAGCTAGGCAGAAGAATTCGTCTTTCTTCCACAGGCGATCGTTCCAGACAACTTCTAGTGGTTGGGGAATGGACAATGATCCTTCACTTGTGCAACCACAAGTTGATCGAAGATACAGTGTTTGCGATCGTGTAATTTTCGGTAACAGGCCTAGTGACTTTGATCCTAGTTTAAGATGGGGTTATAGGCCTAGTGACTATTCAAGGGCAAGTGACTACTCGAGACCGAGTGACTATTCAAGATGGGGTTCATCTGATGATGACAATGGCCTTGTGGATTCACCGAGTACCGTCTTATATTCACCGATGTCCACTAATGGTGGATCTGCCTCTAATGAAGATGGATATAGCATGCCAGGACATTCAAGGTACTGCCTCGTTGCAAGTAAGCAAATGGTGGGAATCTACCTTACCGTATGGGTGAAAGGCGAACTGAAAGATCATGTTCGAAACATGAAAGTATCGTGTGTTGGCAGAGGATTGATGGGATATCTAGGAAATAAGGGGTCCATCTCAATTAGTATGTCTGTGCACGAAACAAGCTTTTGCTTTATCTGCAGTCATTTAACCTCAGGACAGAAAGAGGGTGATGAACTAAGAAGAAATTCTGATGTAATGGAGATTCTTAAAAAGACAAGGTTTCCTCGTGTTCATGGCGTTGACAACGAGAAATCTCCTCAGACAATCCTCGAGCACGATCGAATTATATGGCTTGGAGATTTGAATTATCGGATCGCTCTCTCCTACCGCTCTGCTAAGGCACTTGTTGAGATGCAAAATTGGAGAGCATTGTTAGAAAATGATCAATTGAGAATAGAGCAAAAAAGAGGCCGAGCTTTTGTGGGATGGAACGAAGGGAAGATATATTTTCCTCCAACTTACAAGTATTCAACTAATTCAGATCGATACTCAGGAGATGATATGCACCCCAAGGAAAAAAGGAGAACACCTGCTTGGTGTGACCGTATTCTATGGTATGGAGAAGGTCTCCATCAATTGTCTTATGTTCGCGGTGAATCAAGATTTTCAGACCACAGACCTGTTTATGGCATATTTTGGGCCGAGGTTGAGTCACCTCACGGAAAATTGAAGAAAAGTATGAGCTGTTCTCAGTCAAGAATTGAGTTGGAAGAACTTCTGCCATATTCCGGTGGATATACTGAACTAAACTTTTTCTAA
Protein sequence

>Msa0088040

MGDENSKNTKLSWSKKMVRKFFNFKSKCEDIQADAVVYGGGEVEYGSRNSFSEREPCTIKKSKTEKFSRSTSQVRRGRMNLDHPRIIDVQNYSIFVATWNVAGRSPPSNLSVDDWLHSSPPADIYVLGFQEIVPLNAGNILGAEDNGPAKKWLALIRKTLNNLPGTSGSSGCYTPSPIPQPVVELNADFEGSARQKNSSFFHRRSFQTTSSGWGMDNDPSLVQPQVDRRYSVCDRVIFGNRPSDFDPSLRWGYRPSDYSRASDYSRPSDYSRWGSSDDDNGLVDSPSTVLYSPMSTNGGSASNEDGYSMPGHSRYCLVASKQMVGIYLTVWVKGELKDHVRNMKVSCVGRGLMGYLGNKGSISISMSVHETSFCFICSHLTSGQKEGDELRRNSDVMEILKKTRFPRVHGVDNEKSPQTILEHDRIIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGRAFVGWNEGKIYFPPTYKYSTNSDRYSGDDMHPKEKRRTPAWCDRILWYGEGLHQLSYVRGESRFSDHRPVYGIFWAEVESPHGKLKKSMSCSQSRIELEELLPYSGGYTELNFF*