Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089350 | XP_013470028.1 | 94.643 | 224 | 3 | 1 | 1 | 215 | 1 | 224 | 1.42e-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089350 | sp|C0HJG8|BSP_BOSSE | 55.000 | 60 | 11 | 1 | 153 | 212 | 17 | 60 | 5.89e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089350 | I3SK49 | 94.643 | 224 | 3 | 1 | 1 | 215 | 1 | 224 | 6.76e-154 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040580 | Msa0089350 | 0.809640 | 1.712011e-50 | -8.615850e-47 |
| Msa0089350 | Msa0179860 | 0.801999 | 6.907469e-49 | -8.615850e-47 |
| Msa0089350 | Msa0191010 | 0.817625 | 2.991961e-52 | -8.615850e-47 |
| Msa0089350 | Msa0233310 | 0.836605 | 8.487175e-57 | -8.615850e-47 |
| Msa0089350 | Msa0329550 | 0.810914 | 9.093331e-51 | -8.615850e-47 |
| Msa0089350 | Msa0366470 | 0.828412 | 9.119027e-55 | -8.615850e-47 |
| Msa0089350 | Msa0438050 | 0.801104 | 1.053873e-48 | -8.615850e-47 |
| Msa0089350 | Msa0506230 | 0.808383 | 3.181594e-50 | -8.615850e-47 |
| Msa0089350 | Msa0527250 | 0.812385 | 4.354829e-51 | -8.615850e-47 |
| Msa0089350 | Msa1021340 | 0.820561 | 6.428574e-53 | -8.615850e-47 |
| Msa0089350 | Msa1105270 | 0.809823 | 1.564181e-50 | -8.615850e-47 |
| Msa0089350 | Msa1148720 | 0.823010 | 1.743757e-53 | -8.615850e-47 |
| Msa0089350 | Msa1148750 | 0.818181 | 2.240984e-52 | -8.615850e-47 |
| Msa0089350 | Msa1309880 | 0.815584 | 8.579002e-52 | -8.615850e-47 |
| Msa0089350 | Msa1371580 | 0.811303 | 7.490299e-51 | -8.615850e-47 |
| Msa0089350 | Msa1379710 | 0.808026 | 3.790292e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089350 | MtrunA17_Chr1g0207781 | 94.643 | 224 | 3 | 1 | 1 | 215 | 1 | 224 | 1.30e-157 | 434 |
| Msa0089350 | MtrunA17_Chr1g0207791 | 45.226 | 199 | 85 | 1 | 15 | 213 | 20 | 194 | 1.91e-60 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089350 | AT2G15220.1 | 61.712 | 222 | 75 | 1 | 1 | 212 | 3 | 224 | 7.34e-103 | 296 |
| Msa0089350 | AT2G15130.1 | 54.955 | 222 | 90 | 1 | 1 | 212 | 3 | 224 | 1.89e-89 | 263 |
| Msa0089350 | AT2G15130.2 | 65.035 | 143 | 50 | 0 | 70 | 212 | 1 | 143 | 2.18e-65 | 199 |
| Msa0089350 | AT2G15170.1 | 34.021 | 97 | 52 | 2 | 2 | 86 | 4 | 100 | 3.22e-16 | 71.6 |
Find 50 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCTTTGTTCAACTTT+TGG | 0.208442 | 1_2:+70807143 | Msa0089350:CDS |
| GTGTTTGTGTTAGAGCTCTA+AGG | 0.342944 | 1_2:-70805774 | None:intergenic |
| GATTTGAGAAAGGAGATTAC+AGG | 0.374014 | 1_2:+70806865 | Msa0089350:CDS |
| TCAGTTGTGGACTGAGTATA+AGG | 0.374089 | 1_2:+70807179 | Msa0089350:CDS |
| GCTCTAAGGTTAATTTCTGT+TGG | 0.380193 | 1_2:-70805760 | None:intergenic |
| CTAATTATGCACCTAGTCAT+TGG | 0.392540 | 1_2:+70806989 | Msa0089350:CDS |
| TCCCACTTATTTCCTTGCCC+TGG | 0.425274 | 1_2:-70807018 | None:intergenic |
| TCCAAAGGTGAGTTTATTTG+TGG | 0.444191 | 1_2:+70806765 | Msa0089350:CDS |
| TCCACAAATAAACTCACCTT+TGG | 0.448068 | 1_2:-70806766 | None:intergenic |
| TAGTTTAAGAAGTGGGTTTG+TGG | 0.455276 | 1_2:+70807083 | Msa0089350:CDS |
| ATTCCGCGACACAATTCATA+TGG | 0.455692 | 1_2:+70806701 | Msa0089350:CDS |
| CCTGGTTTCACCCAATGACT+AGG | 0.458525 | 1_2:-70807000 | None:intergenic |
| CTAAGGTTAATTTCTGTTGG+AGG | 0.459299 | 1_2:-70805757 | None:intergenic |
| ACTGAGTATAAGGCAAAGTA+TGG | 0.465459 | 1_2:+70807189 | Msa0089350:CDS |
| TCTGTTGGAGGATGAGTTTG+TGG | 0.469403 | 1_2:-70805745 | None:intergenic |
| TGGAGTAGAGAGGGCATTGT+TGG | 0.474364 | 1_2:-70805874 | None:intergenic |
| TTGAATAAGTTGATGAGGAA+TGG | 0.487887 | 1_2:+70807111 | Msa0089350:CDS |
| TAATTATGCACCTAGTCATT+GGG | 0.492399 | 1_2:+70806990 | Msa0089350:CDS |
| ATTGTGATAGTTTAAGAAGT+GGG | 0.492465 | 1_2:+70807076 | Msa0089350:CDS |
| GCAAGATATGTTAATAGCTA+TGG | 0.493653 | 1_2:+70806838 | Msa0089350:CDS |
| CCTAGTCATTGGGTGAAACC+AGG | 0.495577 | 1_2:+70807000 | Msa0089350:CDS |
| GCTAATGGTGGATTAATTGA+AGG | 0.501572 | 1_2:+70806940 | Msa0089350:CDS |
| AACAATGCCCTCTCTACTCC+AGG | 0.540173 | 1_2:+70805876 | Msa0089350:CDS |
| AATGGTAATGGTCAAGCTAA+TGG | 0.545203 | 1_2:+70806925 | Msa0089350:CDS |
| CTATGGTGGTGATTTGAGAA+AGG | 0.549048 | 1_2:+70806855 | Msa0089350:CDS |
| GTACTCCTTGCTATAATACA+TGG | 0.553308 | 1_2:+70805825 | Msa0089350:CDS |
| ATCATGAAATGACACATGTA+TGG | 0.567977 | 1_2:+70806896 | Msa0089350:CDS |
| AAGGTTATGATGTTACTGCT+AGG | 0.569559 | 1_2:+70807043 | Msa0089350:CDS |
| GGAAGACGGTTAATCAGTTG+TGG | 0.574580 | 1_2:+70807166 | Msa0089350:CDS |
| GAATTCCATGTATTATAGCA+AGG | 0.581020 | 1_2:-70805830 | None:intergenic |
| AACCAGGGCAAGGAAATAAG+TGG | 0.582595 | 1_2:+70807016 | Msa0089350:CDS |
| CAGAGTTGAATAAGTTGATG+AGG | 0.590170 | 1_2:+70807106 | Msa0089350:CDS |
| GAGTTTATTTGTGGACGACA+TGG | 0.592417 | 1_2:+70806774 | Msa0089350:CDS |
| AAATGACACATGTATGGCAG+TGG | 0.595561 | 1_2:+70806902 | Msa0089350:CDS |
| TATTGTGATAGTTTAAGAAG+TGG | 0.595855 | 1_2:+70807075 | Msa0089350:CDS |
| ATTTGAGAAAGGAGATTACA+GGG | 0.596291 | 1_2:+70806866 | Msa0089350:CDS |
| AGTAATACCTGGAGTAGAGA+GGG | 0.597095 | 1_2:-70805883 | None:intergenic |
| GTATGGCAGTGGAATGGTAA+TGG | 0.605899 | 1_2:+70806913 | Msa0089350:CDS |
| TAGCAGTAACATCATAACCT+TGG | 0.615338 | 1_2:-70807041 | None:intergenic |
| TAGTAATACCTGGAGTAGAG+AGG | 0.616886 | 1_2:-70805884 | None:intergenic |
| GGTAATGGTCAAGCTAATGG+TGG | 0.618451 | 1_2:+70806928 | Msa0089350:CDS |
| CTAGTCATTGGGTGAAACCA+GGG | 0.635998 | 1_2:+70807001 | Msa0089350:CDS |
| ACCAGGGCAAGGAAATAAGT+GGG | 0.637731 | 1_2:+70807017 | Msa0089350:CDS |
| CATTGGGTGAAACCAGGGCA+AGG | 0.644436 | 1_2:+70807006 | Msa0089350:CDS |
| TTTCCATATGAATTGTGTCG+CGG | 0.650444 | 1_2:-70806704 | None:intergenic |
| CAAGGAAATAAGTGGGACCA+AGG | 0.660451 | 1_2:+70807024 | Msa0089350:CDS |
| ACACATGTATGGCAGTGGAA+TGG | 0.661405 | 1_2:+70806907 | Msa0089350:CDS |
| TTTGAGAAAGGAGATTACAG+GGG | 0.665077 | 1_2:+70806867 | Msa0089350:CDS |
| AGATATGTTAATAGCTATGG+TGG | 0.666292 | 1_2:+70806841 | Msa0089350:CDS |
| TTATTTGTGGACGACATGGA+TGG | 0.690198 | 1_2:+70806778 | Msa0089350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr1_2:70805934-70805953 | Msa0089350:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr1_2:70805933-70805952 | Msa0089350:intron | 0.0% |
| !! | TATATATATATATATTATAT+GGG | - | chr1_2:70806180-70806199 | None:intergenic | 0.0% |
| !! | ATATATATATATATATTATA+TGG | - | chr1_2:70806181-70806200 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr1_2:70805934-70805953 | Msa0089350:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr1_2:70805933-70805952 | Msa0089350:intron | 0.0% |
| !! | TATATATATATATATTATAT+GGG | - | chr1_2:70806180-70806199 | None:intergenic | 0.0% |
| !! | ATATATATATATATATTATA+TGG | - | chr1_2:70806181-70806200 | None:intergenic | 0.0% |
| !!! | TCTCTTATTTATTTATTTTT+TGG | - | chr1_2:70806281-70806300 | None:intergenic | 10.0% |
| !!! | TCTCTTATTTATTTATTTTT+TGG | - | chr1_2:70806281-70806300 | None:intergenic | 10.0% |
| !!! | TTTTTTTGCTGTATTATTAA+GGG | - | chr1_2:70806432-70806451 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGCTGTATTATTA+AGG | - | chr1_2:70806433-70806452 | None:intergenic | 15.0% |
| !!! | TTTTTTTGCTGTATTATTAA+GGG | - | chr1_2:70806432-70806451 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGCTGTATTATTA+AGG | - | chr1_2:70806433-70806452 | None:intergenic | 15.0% |
| !! | CTATAAAAAATAGTAATACC+TGG | - | chr1_2:70805897-70805916 | None:intergenic | 20.0% |
| !! | ATTCAAAATTGCATTATTCA+CGG | + | chr1_2:70806400-70806419 | Msa0089350:intron | 20.0% |
| !! | AAAACTCTCAATAACATTAA+TGG | + | chr1_2:70806450-70806469 | Msa0089350:intron | 20.0% |
| !!! | GTAATTTTCTGAATTATTGA+GGG | - | chr1_2:70806485-70806504 | None:intergenic | 20.0% |
| !!! | TGTAATTTTCTGAATTATTG+AGG | - | chr1_2:70806486-70806505 | None:intergenic | 20.0% |
| !! | TCAGAAAATTACATTATTGA+TGG | + | chr1_2:70806493-70806512 | Msa0089350:intron | 20.0% |
| !!! | AATATTTTTCATCTAATACC+AGG | + | chr1_2:70806625-70806644 | Msa0089350:intron | 20.0% |
| !! | CTATAAAAAATAGTAATACC+TGG | - | chr1_2:70805897-70805916 | None:intergenic | 20.0% |
| !! | ATTCAAAATTGCATTATTCA+CGG | + | chr1_2:70806400-70806419 | Msa0089350:intron | 20.0% |
| !! | AAAACTCTCAATAACATTAA+TGG | + | chr1_2:70806450-70806469 | Msa0089350:intron | 20.0% |
| !!! | GTAATTTTCTGAATTATTGA+GGG | - | chr1_2:70806485-70806504 | None:intergenic | 20.0% |
| !!! | TGTAATTTTCTGAATTATTG+AGG | - | chr1_2:70806486-70806505 | None:intergenic | 20.0% |
| !! | TCAGAAAATTACATTATTGA+TGG | + | chr1_2:70806493-70806512 | Msa0089350:intron | 20.0% |
| !!! | AATATTTTTCATCTAATACC+AGG | + | chr1_2:70806625-70806644 | Msa0089350:intron | 20.0% |
| ! | GAGTACTAAGAAAAAATAGA+GGG | - | chr1_2:70805811-70805830 | None:intergenic | 25.0% |
| !! | TTTTATAGAAGTTGTTGATG+AGG | + | chr1_2:70805909-70805928 | Msa0089350:intron | 25.0% |
| !! | TTTATAGAAGTTGTTGATGA+GGG | + | chr1_2:70805910-70805929 | Msa0089350:intron | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | + | chr1_2:70806077-70806096 | Msa0089350:intron | 25.0% |
| !! | ATAGAATACACCTTTTATGA+AGG | - | chr1_2:70806152-70806171 | None:intergenic | 25.0% |
| ! | GAAGCACAATTAACTTTATA+TGG | + | chr1_2:70806319-70806338 | Msa0089350:intron | 25.0% |
| !! | TAATGCAATTTTGAATCTGT+CGG | - | chr1_2:70806396-70806415 | None:intergenic | 25.0% |
| ! | TCAGTAATATGTATTATTGG+CGG | - | chr1_2:70806525-70806544 | None:intergenic | 25.0% |
| ! | CCAATAATACATATTACTGA+GGG | + | chr1_2:70806525-70806544 | Msa0089350:intron | 25.0% |
| ! | TATTGTGATAGTTTAAGAAG+TGG | + | chr1_2:70807075-70807094 | Msa0089350:CDS | 25.0% |
| ! | ATTGTGATAGTTTAAGAAGT+GGG | + | chr1_2:70807076-70807095 | Msa0089350:CDS | 25.0% |
| !! | TCAATTCTTTGTTCAACTTT+TGG | + | chr1_2:70807143-70807162 | Msa0089350:CDS | 25.0% |
| !! | CAATTCTTTGTTCAACTTTT+GGG | + | chr1_2:70807144-70807163 | Msa0089350:CDS | 25.0% |
| !! | AATTCTTTGTTCAACTTTTG+GGG | + | chr1_2:70807145-70807164 | Msa0089350:CDS | 25.0% |
| ! | GAGTACTAAGAAAAAATAGA+GGG | - | chr1_2:70805811-70805830 | None:intergenic | 25.0% |
| !! | TTTTATAGAAGTTGTTGATG+AGG | + | chr1_2:70805909-70805928 | Msa0089350:intron | 25.0% |
| !! | TTTATAGAAGTTGTTGATGA+GGG | + | chr1_2:70805910-70805929 | Msa0089350:intron | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | + | chr1_2:70806077-70806096 | Msa0089350:intron | 25.0% |
| !! | ATAGAATACACCTTTTATGA+AGG | - | chr1_2:70806152-70806171 | None:intergenic | 25.0% |
| ! | GAAGCACAATTAACTTTATA+TGG | + | chr1_2:70806319-70806338 | Msa0089350:intron | 25.0% |
| !! | TAATGCAATTTTGAATCTGT+CGG | - | chr1_2:70806396-70806415 | None:intergenic | 25.0% |
| ! | TCAGTAATATGTATTATTGG+CGG | - | chr1_2:70806525-70806544 | None:intergenic | 25.0% |
| ! | CCAATAATACATATTACTGA+GGG | + | chr1_2:70806525-70806544 | Msa0089350:intron | 25.0% |
| ! | TATTGTGATAGTTTAAGAAG+TGG | + | chr1_2:70807075-70807094 | Msa0089350:CDS | 25.0% |
| ! | ATTGTGATAGTTTAAGAAGT+GGG | + | chr1_2:70807076-70807095 | Msa0089350:CDS | 25.0% |
| !! | TCAATTCTTTGTTCAACTTT+TGG | + | chr1_2:70807143-70807162 | Msa0089350:CDS | 25.0% |
| !! | CAATTCTTTGTTCAACTTTT+GGG | + | chr1_2:70807144-70807163 | Msa0089350:CDS | 25.0% |
| !! | AATTCTTTGTTCAACTTTTG+GGG | + | chr1_2:70807145-70807164 | Msa0089350:CDS | 25.0% |
| ! | GGAGTACTAAGAAAAAATAG+AGG | - | chr1_2:70805812-70805831 | None:intergenic | 30.0% |
| GAATTCCATGTATTATAGCA+AGG | - | chr1_2:70805833-70805852 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | + | chr1_2:70806084-70806103 | Msa0089350:intron | 30.0% | |
| !!! | ACACCAACTACTTTTTATGA+AGG | - | chr1_2:70806090-70806109 | None:intergenic | 30.0% |
| ACTCTCAATAACATTAATGG+TGG | + | chr1_2:70806453-70806472 | Msa0089350:intron | 30.0% | |
| ! | AATATGTATTATTGGCGGAT+TGG | - | chr1_2:70806520-70806539 | None:intergenic | 30.0% |
| GCCAATAATACATATTACTG+AGG | + | chr1_2:70806524-70806543 | Msa0089350:intron | 30.0% | |
| CCCTCAGTAATATGTATTAT+TGG | - | chr1_2:70806528-70806547 | None:intergenic | 30.0% | |
| !!! | AGAATTTTAGTTGTTACCTG+TGG | - | chr1_2:70806578-70806597 | None:intergenic | 30.0% |
| ! | ATTTTTCATCTAATACCAGG+TGG | + | chr1_2:70806628-70806647 | Msa0089350:intron | 30.0% |
| !!! | CTTTGGAACATTTTTTCTGT+CGG | - | chr1_2:70806752-70806771 | None:intergenic | 30.0% |
| GCAAGATATGTTAATAGCTA+TGG | + | chr1_2:70806838-70806857 | Msa0089350:CDS | 30.0% | |
| AGATATGTTAATAGCTATGG+TGG | + | chr1_2:70806841-70806860 | Msa0089350:CDS | 30.0% | |
| ATTTGAGAAAGGAGATTACA+GGG | + | chr1_2:70806866-70806885 | Msa0089350:CDS | 30.0% | |
| ATCATGAAATGACACATGTA+TGG | + | chr1_2:70806896-70806915 | Msa0089350:CDS | 30.0% | |
| TAATTATGCACCTAGTCATT+GGG | + | chr1_2:70806990-70807009 | Msa0089350:CDS | 30.0% | |
| !! | TTGAATAAGTTGATGAGGAA+TGG | + | chr1_2:70807111-70807130 | Msa0089350:CDS | 30.0% |
| ! | GGAGTACTAAGAAAAAATAG+AGG | - | chr1_2:70805812-70805831 | None:intergenic | 30.0% |
| GAATTCCATGTATTATAGCA+AGG | - | chr1_2:70805833-70805852 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAAGTAGT+TGG | + | chr1_2:70806084-70806103 | Msa0089350:intron | 30.0% | |
| !!! | ACACCAACTACTTTTTATGA+AGG | - | chr1_2:70806090-70806109 | None:intergenic | 30.0% |
| ACTCTCAATAACATTAATGG+TGG | + | chr1_2:70806453-70806472 | Msa0089350:intron | 30.0% | |
| ! | AATATGTATTATTGGCGGAT+TGG | - | chr1_2:70806520-70806539 | None:intergenic | 30.0% |
| GCCAATAATACATATTACTG+AGG | + | chr1_2:70806524-70806543 | Msa0089350:intron | 30.0% | |
| CCCTCAGTAATATGTATTAT+TGG | - | chr1_2:70806528-70806547 | None:intergenic | 30.0% | |
| !!! | AGAATTTTAGTTGTTACCTG+TGG | - | chr1_2:70806578-70806597 | None:intergenic | 30.0% |
| ! | ATTTTTCATCTAATACCAGG+TGG | + | chr1_2:70806628-70806647 | Msa0089350:intron | 30.0% |
| !!! | CTTTGGAACATTTTTTCTGT+CGG | - | chr1_2:70806752-70806771 | None:intergenic | 30.0% |
| GCAAGATATGTTAATAGCTA+TGG | + | chr1_2:70806838-70806857 | Msa0089350:CDS | 30.0% | |
| AGATATGTTAATAGCTATGG+TGG | + | chr1_2:70806841-70806860 | Msa0089350:CDS | 30.0% | |
| ATTTGAGAAAGGAGATTACA+GGG | + | chr1_2:70806866-70806885 | Msa0089350:CDS | 30.0% | |
| ATCATGAAATGACACATGTA+TGG | + | chr1_2:70806896-70806915 | Msa0089350:CDS | 30.0% | |
| TAATTATGCACCTAGTCATT+GGG | + | chr1_2:70806990-70807009 | Msa0089350:CDS | 30.0% | |
| !! | TTGAATAAGTTGATGAGGAA+TGG | + | chr1_2:70807111-70807130 | Msa0089350:CDS | 30.0% |
| CTAAGGTTAATTTCTGTTGG+AGG | - | chr1_2:70805760-70805779 | None:intergenic | 35.0% | |
| !! | GCTCTAAGGTTAATTTCTGT+TGG | - | chr1_2:70805763-70805782 | None:intergenic | 35.0% |
| ! | GTACTCCTTGCTATAATACA+TGG | + | chr1_2:70805825-70805844 | Msa0089350:CDS | 35.0% |
| ! | TTATGTTACAAGCCACCTTT+TGG | + | chr1_2:70805994-70806013 | Msa0089350:intron | 35.0% |
| TGATAAAAGACACCACCAAA+AGG | - | chr1_2:70806012-70806031 | None:intergenic | 35.0% | |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr1_2:70806024-70806043 | Msa0089350:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | chr1_2:70806042-70806061 | None:intergenic | 35.0% | |
| ATTGTGCTCCTATTTGATCA+CGG | - | chr1_2:70806663-70806682 | None:intergenic | 35.0% | |
| TTTCCATATGAATTGTGTCG+CGG | - | chr1_2:70806707-70806726 | None:intergenic | 35.0% | |
| CGACAGAAAAAATGTTCCAA+AGG | + | chr1_2:70806750-70806769 | Msa0089350:CDS | 35.0% | |
| TCCAAAGGTGAGTTTATTTG+TGG | + | chr1_2:70806765-70806784 | Msa0089350:CDS | 35.0% | |
| TCCACAAATAAACTCACCTT+TGG | - | chr1_2:70806769-70806788 | None:intergenic | 35.0% | |
| GATTTGAGAAAGGAGATTAC+AGG | + | chr1_2:70806865-70806884 | Msa0089350:CDS | 35.0% | |
| TTTGAGAAAGGAGATTACAG+GGG | + | chr1_2:70806867-70806886 | Msa0089350:CDS | 35.0% | |
| !! | AATGGTAATGGTCAAGCTAA+TGG | + | chr1_2:70806925-70806944 | Msa0089350:CDS | 35.0% |
| !! | GCTAATGGTGGATTAATTGA+AGG | + | chr1_2:70806940-70806959 | Msa0089350:CDS | 35.0% |
| CTAATTATGCACCTAGTCAT+TGG | + | chr1_2:70806989-70807008 | Msa0089350:CDS | 35.0% | |
| TAGCAGTAACATCATAACCT+TGG | - | chr1_2:70807044-70807063 | None:intergenic | 35.0% | |
| AAGGTTATGATGTTACTGCT+AGG | + | chr1_2:70807043-70807062 | Msa0089350:CDS | 35.0% | |
| ! | TGATGTTACTGCTAGGTTTT+TGG | + | chr1_2:70807050-70807069 | Msa0089350:CDS | 35.0% |
| ! | TAGTTTAAGAAGTGGGTTTG+TGG | + | chr1_2:70807083-70807102 | Msa0089350:CDS | 35.0% |
| !! | CAGAGTTGAATAAGTTGATG+AGG | + | chr1_2:70807106-70807125 | Msa0089350:CDS | 35.0% |
| ACTGAGTATAAGGCAAAGTA+TGG | + | chr1_2:70807189-70807208 | Msa0089350:CDS | 35.0% | |
| CTAAGGTTAATTTCTGTTGG+AGG | - | chr1_2:70805760-70805779 | None:intergenic | 35.0% | |
| !! | GCTCTAAGGTTAATTTCTGT+TGG | - | chr1_2:70805763-70805782 | None:intergenic | 35.0% |
| ! | GTACTCCTTGCTATAATACA+TGG | + | chr1_2:70805825-70805844 | Msa0089350:CDS | 35.0% |
| ! | TTATGTTACAAGCCACCTTT+TGG | + | chr1_2:70805994-70806013 | Msa0089350:intron | 35.0% |
| TGATAAAAGACACCACCAAA+AGG | - | chr1_2:70806012-70806031 | None:intergenic | 35.0% | |
| ! | TTTTATCAAGTCACACCTCA+AGG | + | chr1_2:70806024-70806043 | Msa0089350:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | - | chr1_2:70806042-70806061 | None:intergenic | 35.0% | |
| ATTGTGCTCCTATTTGATCA+CGG | - | chr1_2:70806663-70806682 | None:intergenic | 35.0% | |
| TTTCCATATGAATTGTGTCG+CGG | - | chr1_2:70806707-70806726 | None:intergenic | 35.0% | |
| CGACAGAAAAAATGTTCCAA+AGG | + | chr1_2:70806750-70806769 | Msa0089350:CDS | 35.0% | |
| TCCAAAGGTGAGTTTATTTG+TGG | + | chr1_2:70806765-70806784 | Msa0089350:CDS | 35.0% | |
| TCCACAAATAAACTCACCTT+TGG | - | chr1_2:70806769-70806788 | None:intergenic | 35.0% | |
| GATTTGAGAAAGGAGATTAC+AGG | + | chr1_2:70806865-70806884 | Msa0089350:CDS | 35.0% | |
| TTTGAGAAAGGAGATTACAG+GGG | + | chr1_2:70806867-70806886 | Msa0089350:CDS | 35.0% | |
| !! | AATGGTAATGGTCAAGCTAA+TGG | + | chr1_2:70806925-70806944 | Msa0089350:CDS | 35.0% |
| !! | GCTAATGGTGGATTAATTGA+AGG | + | chr1_2:70806940-70806959 | Msa0089350:CDS | 35.0% |
| CTAATTATGCACCTAGTCAT+TGG | + | chr1_2:70806989-70807008 | Msa0089350:CDS | 35.0% | |
| TAGCAGTAACATCATAACCT+TGG | - | chr1_2:70807044-70807063 | None:intergenic | 35.0% | |
| AAGGTTATGATGTTACTGCT+AGG | + | chr1_2:70807043-70807062 | Msa0089350:CDS | 35.0% | |
| ! | TGATGTTACTGCTAGGTTTT+TGG | + | chr1_2:70807050-70807069 | Msa0089350:CDS | 35.0% |
| ! | TAGTTTAAGAAGTGGGTTTG+TGG | + | chr1_2:70807083-70807102 | Msa0089350:CDS | 35.0% |
| !! | CAGAGTTGAATAAGTTGATG+AGG | + | chr1_2:70807106-70807125 | Msa0089350:CDS | 35.0% |
| ACTGAGTATAAGGCAAAGTA+TGG | + | chr1_2:70807189-70807208 | Msa0089350:CDS | 35.0% | |
| GTGTTTGTGTTAGAGCTCTA+AGG | - | chr1_2:70805777-70805796 | None:intergenic | 40.0% | |
| AGTAATACCTGGAGTAGAGA+GGG | - | chr1_2:70805886-70805905 | None:intergenic | 40.0% | |
| TAGTAATACCTGGAGTAGAG+AGG | - | chr1_2:70805887-70805906 | None:intergenic | 40.0% | |
| TAAAAGACACCACCAAAAGG+TGG | - | chr1_2:70806009-70806028 | None:intergenic | 40.0% | |
| TACCTGTGGAAATAAACCCT+CGG | - | chr1_2:70806564-70806583 | None:intergenic | 40.0% | |
| GTACGTTTCCGTGATCAAAT+AGG | + | chr1_2:70806652-70806671 | Msa0089350:intron | 40.0% | |
| ATTCCGCGACACAATTCATA+TGG | + | chr1_2:70806701-70806720 | Msa0089350:CDS | 40.0% | |
| !!! | GAACATTTTTTCTGTCGGCA+GGG | - | chr1_2:70806747-70806766 | None:intergenic | 40.0% |
| GAGTTTATTTGTGGACGACA+TGG | + | chr1_2:70806774-70806793 | Msa0089350:CDS | 40.0% | |
| TTATTTGTGGACGACATGGA+TGG | + | chr1_2:70806778-70806797 | Msa0089350:CDS | 40.0% | |
| ! | CTATGGTGGTGATTTGAGAA+AGG | + | chr1_2:70806855-70806874 | Msa0089350:CDS | 40.0% |
| AAATGACACATGTATGGCAG+TGG | + | chr1_2:70806902-70806921 | Msa0089350:CDS | 40.0% | |
| !! | TGTTCAACTTTTGGGGAAGA+CGG | + | chr1_2:70807152-70807171 | Msa0089350:CDS | 40.0% |
| ! | TCAGTTGTGGACTGAGTATA+AGG | + | chr1_2:70807179-70807198 | Msa0089350:CDS | 40.0% |
| GTGTTTGTGTTAGAGCTCTA+AGG | - | chr1_2:70805777-70805796 | None:intergenic | 40.0% | |
| AGTAATACCTGGAGTAGAGA+GGG | - | chr1_2:70805886-70805905 | None:intergenic | 40.0% | |
| TAGTAATACCTGGAGTAGAG+AGG | - | chr1_2:70805887-70805906 | None:intergenic | 40.0% | |
| TAAAAGACACCACCAAAAGG+TGG | - | chr1_2:70806009-70806028 | None:intergenic | 40.0% | |
| TACCTGTGGAAATAAACCCT+CGG | - | chr1_2:70806564-70806583 | None:intergenic | 40.0% | |
| GTACGTTTCCGTGATCAAAT+AGG | + | chr1_2:70806652-70806671 | Msa0089350:intron | 40.0% | |
| ATTCCGCGACACAATTCATA+TGG | + | chr1_2:70806701-70806720 | Msa0089350:CDS | 40.0% | |
| !!! | GAACATTTTTTCTGTCGGCA+GGG | - | chr1_2:70806747-70806766 | None:intergenic | 40.0% |
| GAGTTTATTTGTGGACGACA+TGG | + | chr1_2:70806774-70806793 | Msa0089350:CDS | 40.0% | |
| TTATTTGTGGACGACATGGA+TGG | + | chr1_2:70806778-70806797 | Msa0089350:CDS | 40.0% | |
| ! | CTATGGTGGTGATTTGAGAA+AGG | + | chr1_2:70806855-70806874 | Msa0089350:CDS | 40.0% |
| AAATGACACATGTATGGCAG+TGG | + | chr1_2:70806902-70806921 | Msa0089350:CDS | 40.0% | |
| !! | TGTTCAACTTTTGGGGAAGA+CGG | + | chr1_2:70807152-70807171 | Msa0089350:CDS | 40.0% |
| ! | TCAGTTGTGGACTGAGTATA+AGG | + | chr1_2:70807179-70807198 | Msa0089350:CDS | 40.0% |
| TCTGTTGGAGGATGAGTTTG+TGG | - | chr1_2:70805748-70805767 | None:intergenic | 45.0% | |
| ! | TGTTACAAGCCACCTTTTGG+TGG | + | chr1_2:70805997-70806016 | Msa0089350:intron | 45.0% |
| ! | AGGGTTTTTCTGCATTACCG+AGG | + | chr1_2:70806544-70806563 | Msa0089350:intron | 45.0% |
| ! | GGGTTTTTCTGCATTACCGA+GGG | + | chr1_2:70806545-70806564 | Msa0089350:intron | 45.0% |
| TACCGAGGGTTTATTTCCAC+AGG | + | chr1_2:70806559-70806578 | Msa0089350:intron | 45.0% | |
| !!! | GGAACATTTTTTCTGTCGGC+AGG | - | chr1_2:70806748-70806767 | None:intergenic | 45.0% |
| ACACATGTATGGCAGTGGAA+TGG | + | chr1_2:70806907-70806926 | Msa0089350:CDS | 45.0% | |
| GTATGGCAGTGGAATGGTAA+TGG | + | chr1_2:70806913-70806932 | Msa0089350:CDS | 45.0% | |
| ! | GGTAATGGTCAAGCTAATGG+TGG | + | chr1_2:70806928-70806947 | Msa0089350:CDS | 45.0% |
| CTAGTCATTGGGTGAAACCA+GGG | + | chr1_2:70807001-70807020 | Msa0089350:CDS | 45.0% | |
| AACCAGGGCAAGGAAATAAG+TGG | + | chr1_2:70807016-70807035 | Msa0089350:CDS | 45.0% | |
| ACCAGGGCAAGGAAATAAGT+GGG | + | chr1_2:70807017-70807036 | Msa0089350:CDS | 45.0% | |
| CAAGGAAATAAGTGGGACCA+AGG | + | chr1_2:70807024-70807043 | Msa0089350:CDS | 45.0% | |
| GGAAGACGGTTAATCAGTTG+TGG | + | chr1_2:70807166-70807185 | Msa0089350:CDS | 45.0% | |
| TCTGTTGGAGGATGAGTTTG+TGG | - | chr1_2:70805748-70805767 | None:intergenic | 45.0% | |
| ! | TGTTACAAGCCACCTTTTGG+TGG | + | chr1_2:70805997-70806016 | Msa0089350:intron | 45.0% |
| ! | AGGGTTTTTCTGCATTACCG+AGG | + | chr1_2:70806544-70806563 | Msa0089350:intron | 45.0% |
| ! | GGGTTTTTCTGCATTACCGA+GGG | + | chr1_2:70806545-70806564 | Msa0089350:intron | 45.0% |
| TACCGAGGGTTTATTTCCAC+AGG | + | chr1_2:70806559-70806578 | Msa0089350:intron | 45.0% | |
| !!! | GGAACATTTTTTCTGTCGGC+AGG | - | chr1_2:70806748-70806767 | None:intergenic | 45.0% |
| ACACATGTATGGCAGTGGAA+TGG | + | chr1_2:70806907-70806926 | Msa0089350:CDS | 45.0% | |
| GTATGGCAGTGGAATGGTAA+TGG | + | chr1_2:70806913-70806932 | Msa0089350:CDS | 45.0% | |
| ! | GGTAATGGTCAAGCTAATGG+TGG | + | chr1_2:70806928-70806947 | Msa0089350:CDS | 45.0% |
| CTAGTCATTGGGTGAAACCA+GGG | + | chr1_2:70807001-70807020 | Msa0089350:CDS | 45.0% | |
| AACCAGGGCAAGGAAATAAG+TGG | + | chr1_2:70807016-70807035 | Msa0089350:CDS | 45.0% | |
| ACCAGGGCAAGGAAATAAGT+GGG | + | chr1_2:70807017-70807036 | Msa0089350:CDS | 45.0% | |
| CAAGGAAATAAGTGGGACCA+AGG | + | chr1_2:70807024-70807043 | Msa0089350:CDS | 45.0% | |
| GGAAGACGGTTAATCAGTTG+TGG | + | chr1_2:70807166-70807185 | Msa0089350:CDS | 45.0% | |
| !! | TGGAGTAGAGAGGGCATTGT+TGG | - | chr1_2:70805877-70805896 | None:intergenic | 50.0% |
| AACAATGCCCTCTCTACTCC+AGG | + | chr1_2:70805876-70805895 | Msa0089350:CDS | 50.0% | |
| !! | TGTCGGCAGGGTTGTTTTGT+TGG | - | chr1_2:70806735-70806754 | None:intergenic | 50.0% |
| CCTGGTTTCACCCAATGACT+AGG | - | chr1_2:70807003-70807022 | None:intergenic | 50.0% | |
| CCTAGTCATTGGGTGAAACC+AGG | + | chr1_2:70807000-70807019 | Msa0089350:CDS | 50.0% | |
| TCCCACTTATTTCCTTGCCC+TGG | - | chr1_2:70807021-70807040 | None:intergenic | 50.0% | |
| !! | TGGAGTAGAGAGGGCATTGT+TGG | - | chr1_2:70805877-70805896 | None:intergenic | 50.0% |
| AACAATGCCCTCTCTACTCC+AGG | + | chr1_2:70805876-70805895 | Msa0089350:CDS | 50.0% | |
| !! | TGTCGGCAGGGTTGTTTTGT+TGG | - | chr1_2:70806735-70806754 | None:intergenic | 50.0% |
| CCTGGTTTCACCCAATGACT+AGG | - | chr1_2:70807003-70807022 | None:intergenic | 50.0% | |
| CCTAGTCATTGGGTGAAACC+AGG | + | chr1_2:70807000-70807019 | Msa0089350:CDS | 50.0% | |
| TCCCACTTATTTCCTTGCCC+TGG | - | chr1_2:70807021-70807040 | None:intergenic | 50.0% | |
| TCACGGAAACGTACTCCACC+TGG | - | chr1_2:70806646-70806665 | None:intergenic | 55.0% | |
| CATTGGGTGAAACCAGGGCA+AGG | + | chr1_2:70807006-70807025 | Msa0089350:CDS | 55.0% | |
| TCACGGAAACGTACTCCACC+TGG | - | chr1_2:70806646-70806665 | None:intergenic | 55.0% | |
| CATTGGGTGAAACCAGGGCA+AGG | + | chr1_2:70807006-70807025 | Msa0089350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 70805743 | 70807224 | 70805743 | ID=Msa0089350;Name=Msa0089350 |
| chr1_2 | mRNA | 70805743 | 70807224 | 70805743 | ID=Msa0089350-mRNA-1;Parent=Msa0089350;Name=Msa0089350-mRNA-1;_AED=0.19;_eAED=0.20;_QI=58|0|0.5|1|1|1|2|0|215 |
| chr1_2 | exon | 70805743 | 70805897 | 70805743 | ID=Msa0089350-mRNA-1:exon:24414;Parent=Msa0089350-mRNA-1 |
| chr1_2 | exon | 70806674 | 70807224 | 70806674 | ID=Msa0089350-mRNA-1:exon:24415;Parent=Msa0089350-mRNA-1 |
| chr1_2 | five_prime_UTR | 70805743 | 70805800 | 70805743 | ID=Msa0089350-mRNA-1:five_prime_utr;Parent=Msa0089350-mRNA-1 |
| chr1_2 | CDS | 70805801 | 70805897 | 70805801 | ID=Msa0089350-mRNA-1:cds;Parent=Msa0089350-mRNA-1 |
| chr1_2 | CDS | 70806674 | 70807224 | 70806674 | ID=Msa0089350-mRNA-1:cds;Parent=Msa0089350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
