Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366470 | XP_013460446.1 | 91.228 | 114 | 2 | 1 | 1 | 106 | 1 | 114 | 1.75e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366470 | sp|Q03461|NLTP2_TOBAC | 39.823 | 113 | 59 | 4 | 1 | 106 | 4 | 114 | 6.53e-19 | 78.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366470 | B7FGR3 | 91.228 | 114 | 2 | 1 | 1 | 106 | 1 | 114 | 8.38e-69 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006700 | Msa0366470 | 0.807343 | 5.294364e-50 | -8.615850e-47 |
| Msa0015100 | Msa0366470 | 0.809402 | 1.925760e-50 | -8.615850e-47 |
| Msa0026930 | Msa0366470 | 0.812395 | 4.332883e-51 | -8.615850e-47 |
| Msa0049330 | Msa0366470 | 0.803882 | 2.819726e-49 | -8.615850e-47 |
| Msa0049770 | Msa0366470 | 0.809612 | 1.736561e-50 | -8.615850e-47 |
| Msa0051100 | Msa0366470 | 0.822866 | 1.883493e-53 | -8.615850e-47 |
| Msa0064550 | Msa0366470 | 0.805019 | 1.633793e-49 | -8.615850e-47 |
| Msa0071550 | Msa0366470 | 0.823761 | 1.163983e-53 | -8.615850e-47 |
| Msa0074780 | Msa0366470 | 0.805803 | 1.119182e-49 | -8.615850e-47 |
| Msa0088550 | Msa0366470 | 0.829644 | 4.587706e-55 | -8.615850e-47 |
| Msa0089350 | Msa0366470 | 0.828412 | 9.119027e-55 | -8.615850e-47 |
| Msa0101060 | Msa0366470 | 0.812229 | 4.709448e-51 | -8.615850e-47 |
| Msa0101650 | Msa0366470 | 0.837141 | 6.191222e-57 | -8.615850e-47 |
| Msa0104360 | Msa0366470 | 0.833722 | 4.528766e-56 | -8.615850e-47 |
| Msa0109490 | Msa0366470 | 0.824083 | 9.780027e-54 | -8.615850e-47 |
| Msa0111310 | Msa0366470 | 0.816378 | 5.703060e-52 | -8.615850e-47 |
| Msa0135360 | Msa0366470 | 0.829011 | 6.535744e-55 | -8.615850e-47 |
| Msa0153430 | Msa0366470 | 0.805682 | 1.186726e-49 | -8.615850e-47 |
| Msa0153440 | Msa0366470 | 0.812972 | 3.239295e-51 | -8.615850e-47 |
| Msa0178350 | Msa0366470 | 0.851749 | 7.247857e-61 | -8.615850e-47 |
| Msa0179860 | Msa0366470 | 0.807564 | 4.752272e-50 | -8.615850e-47 |
| Msa0198440 | Msa0366470 | 0.831107 | 2.012833e-55 | -8.615850e-47 |
| Msa0200840 | Msa0366470 | 0.814021 | 1.904702e-51 | -8.615850e-47 |
| Msa0200870 | Msa0366470 | 0.832289 | 1.029401e-55 | -8.615850e-47 |
| Msa0213090 | Msa0366470 | 0.802489 | 5.476804e-49 | -8.615850e-47 |
| Msa0216550 | Msa0366470 | 0.824551 | 7.592147e-54 | -8.615850e-47 |
| Msa0232860 | Msa0366470 | 0.834508 | 2.878151e-56 | -8.615850e-47 |
| Msa0233310 | Msa0366470 | 0.801209 | 1.002975e-48 | -8.615850e-47 |
| Msa0235550 | Msa0366470 | 0.800567 | 1.356572e-48 | -8.615850e-47 |
| Msa0366470 | Msa0366870 | 0.805730 | 1.159123e-49 | -8.615850e-47 |
| Msa0366470 | Msa0379820 | 0.813146 | 2.967508e-51 | -8.615850e-47 |
| Msa0366470 | Msa0389050 | 0.824543 | 7.626757e-54 | -8.615850e-47 |
| Msa0366470 | Msa0389060 | 0.801323 | 9.504826e-49 | -8.615850e-47 |
| Msa0366470 | Msa0389360 | 0.831892 | 1.290078e-55 | -8.615850e-47 |
| Msa0366470 | Msa0389810 | 0.810404 | 1.172085e-50 | -8.615850e-47 |
| Msa0366470 | Msa0411000 | 0.820277 | 7.469373e-53 | -8.615850e-47 |
| Msa0366470 | Msa0414450 | 0.902102 | 1.366062e-78 | -8.615850e-47 |
| Msa0366470 | Msa0431520 | 0.801247 | 9.854138e-49 | -8.615850e-47 |
| Msa0366470 | Msa0431830 | 0.808923 | 2.440079e-50 | -8.615850e-47 |
| Msa0366470 | Msa0439700 | 0.804573 | 2.024809e-49 | -8.615850e-47 |
| Msa0366470 | Msa0449760 | 0.807051 | 6.106033e-50 | -8.615850e-47 |
| Msa0366470 | Msa0455230 | 0.831430 | 1.676572e-55 | -8.615850e-47 |
| Msa0366470 | Msa0459270 | 0.888249 | 6.982945e-73 | -8.615850e-47 |
| Msa0366470 | Msa0482190 | -0.814079 | 1.848854e-51 | -8.615850e-47 |
| Msa0366470 | Msa0485500 | -0.812434 | 4.248624e-51 | -8.615850e-47 |
| Msa0366470 | Msa0501470 | 0.801515 | 8.683586e-49 | -8.615850e-47 |
| Msa0366470 | Msa0502910 | 0.825681 | 4.105906e-54 | -8.615850e-47 |
| Msa0366470 | Msa0506230 | 0.944255 | 2.729433e-103 | -8.615850e-47 |
| Msa0366470 | Msa0516310 | 0.817094 | 3.940389e-52 | -8.615850e-47 |
| Msa0366470 | Msa0527250 | 0.812068 | 5.105188e-51 | -8.615850e-47 |
| Msa0366470 | Msa0528970 | 0.817176 | 3.776180e-52 | -8.615850e-47 |
| Msa0366470 | Msa0543900 | 0.856303 | 3.523363e-62 | -8.615850e-47 |
| Msa0366470 | Msa0544930 | 0.824056 | 9.927154e-54 | -8.615850e-47 |
| Msa0366470 | Msa0589610 | 0.823972 | 1.038499e-53 | -8.615850e-47 |
| Msa0366470 | Msa0599770 | 0.845205 | 4.697070e-59 | -8.615850e-47 |
| Msa0366470 | Msa0600820 | 0.820853 | 5.506108e-53 | -8.615850e-47 |
| Msa0366470 | Msa0607680 | 0.817813 | 2.713678e-52 | -8.615850e-47 |
| Msa0366470 | Msa0613470 | 0.838040 | 3.641870e-57 | -8.615850e-47 |
| Msa0366470 | Msa0613480 | 0.821096 | 4.840751e-53 | -8.615850e-47 |
| Msa0366470 | Msa0617370 | 0.813254 | 2.809230e-51 | -8.615850e-47 |
| Msa0366470 | Msa0617830 | 0.800029 | 1.745581e-48 | -8.615850e-47 |
| Msa0366470 | Msa0620640 | 0.805564 | 1.256346e-49 | -8.615850e-47 |
| Msa0366470 | Msa0639030 | 0.805010 | 1.641074e-49 | -8.615850e-47 |
| Msa0366470 | Msa0640380 | 0.846583 | 1.983196e-59 | -8.615850e-47 |
| Msa0366470 | Msa0641020 | 0.825393 | 4.802839e-54 | -8.615850e-47 |
| Msa0366470 | Msa0641030 | 0.802096 | 6.596273e-49 | -8.615850e-47 |
| Msa0366470 | Msa0654020 | 0.838023 | 3.679312e-57 | -8.615850e-47 |
| Msa0366470 | Msa0656270 | 0.828913 | 6.900818e-55 | -8.615850e-47 |
| Msa0366470 | Msa0656680 | 0.800032 | 1.743054e-48 | -8.615850e-47 |
| Msa0366470 | Msa0661890 | 0.814696 | 1.350964e-51 | -8.615850e-47 |
| Msa0366470 | Msa0672850 | 0.828278 | 9.827982e-55 | -8.615850e-47 |
| Msa0366470 | Msa0678820 | 0.849734 | 2.674168e-60 | -8.615850e-47 |
| Msa0366470 | Msa0679560 | 0.810027 | 1.413932e-50 | -8.615850e-47 |
| Msa0366470 | Msa0697600 | 0.808019 | 3.804416e-50 | -8.615850e-47 |
| Msa0366470 | Msa0700070 | 0.821641 | 3.623442e-53 | -8.615850e-47 |
| Msa0366470 | Msa0718470 | 0.828583 | 8.293401e-55 | -8.615850e-47 |
| Msa0366470 | Msa0722930 | 0.805567 | 1.254048e-49 | -8.615850e-47 |
| Msa0366470 | Msa0723140 | 0.807962 | 3.912370e-50 | -8.615850e-47 |
| Msa0366470 | Msa0724550 | 0.812922 | 3.321838e-51 | -8.615850e-47 |
| Msa0366470 | Msa0752580 | 0.835280 | 1.839564e-56 | -8.615850e-47 |
| Msa0366470 | Msa0754500 | 0.827931 | 1.190867e-54 | -8.615850e-47 |
| Msa0366470 | Msa0765130 | 0.810031 | 1.411047e-50 | -8.615850e-47 |
| Msa0366470 | Msa0801100 | 0.828831 | 7.224516e-55 | -8.615850e-47 |
| Msa0366470 | Msa0811940 | 0.809111 | 2.223950e-50 | -8.615850e-47 |
| Msa0366470 | Msa0830900 | 0.808810 | 2.579878e-50 | -8.615850e-47 |
| Msa0366470 | Msa0839480 | 0.840107 | 1.060870e-57 | -8.615850e-47 |
| Msa0366470 | Msa0842970 | 0.835920 | 1.266824e-56 | -8.615850e-47 |
| Msa0366470 | Msa0843280 | 0.804154 | 2.475824e-49 | -8.615850e-47 |
| Msa0366470 | Msa0883350 | 0.826402 | 2.767101e-54 | -8.615850e-47 |
| Msa0366470 | Msa0883450 | 0.828884 | 7.015110e-55 | -8.615850e-47 |
| Msa0366470 | Msa0883660 | 0.810038 | 1.406136e-50 | -8.615850e-47 |
| Msa0366470 | Msa0883670 | 0.810162 | 1.321926e-50 | -8.615850e-47 |
| Msa0366470 | Msa0942310 | 0.801768 | 7.706180e-49 | -8.615850e-47 |
| Msa0366470 | Msa0951720 | 0.808508 | 2.992291e-50 | -8.615850e-47 |
| Msa0366470 | Msa0979250 | 0.817608 | 3.019813e-52 | -8.615850e-47 |
| Msa0366470 | Msa0982270 | 0.815099 | 1.099396e-51 | -8.615850e-47 |
| Msa0366470 | Msa1012920 | 0.841933 | 3.517330e-58 | -8.615850e-47 |
| Msa0366470 | Msa1021340 | 0.817000 | 4.137474e-52 | -8.615850e-47 |
| Msa0366470 | Msa1022610 | 0.821713 | 3.487755e-53 | -8.615850e-47 |
| Msa0366470 | Msa1054410 | 0.844923 | 5.597107e-59 | -8.615850e-47 |
| Msa0366470 | Msa1105270 | 0.824755 | 6.795500e-54 | -8.615850e-47 |
| Msa0366470 | Msa1141250 | -0.874663 | 5.665514e-68 | -8.615850e-47 |
| Msa0366470 | Msa1142500 | 0.803547 | 3.309201e-49 | -8.615850e-47 |
| Msa0366470 | Msa1148720 | 0.825330 | 4.972582e-54 | -8.615850e-47 |
| Msa0366470 | Msa1148750 | 0.818488 | 1.909517e-52 | -8.615850e-47 |
| Msa0366470 | Msa1176070 | 0.802435 | 5.618663e-49 | -8.615850e-47 |
| Msa0366470 | Msa1182830 | 0.817417 | 3.334304e-52 | -8.615850e-47 |
| Msa0366470 | Msa1200960 | 0.820047 | 8.430224e-53 | -8.615850e-47 |
| Msa0366470 | Msa1208340 | 0.801779 | 7.664361e-49 | -8.615850e-47 |
| Msa0366470 | Msa1211390 | 0.839594 | 1.442956e-57 | -8.615850e-47 |
| Msa0366470 | Msa1237260 | 0.814841 | 1.254278e-51 | -8.615850e-47 |
| Msa0366470 | Msa1252070 | 0.850740 | 1.397013e-60 | -8.615850e-47 |
| Msa0366470 | Msa1253970 | 0.815061 | 1.121221e-51 | -8.615850e-47 |
| Msa0366470 | Msa1258380 | -0.813225 | 2.850018e-51 | -8.615850e-47 |
| Msa0366470 | Msa1272130 | 0.842459 | 2.552599e-58 | -8.615850e-47 |
| Msa0366470 | Msa1282210 | 0.810949 | 8.936773e-51 | -8.615850e-47 |
| Msa0366470 | Msa1292730 | 0.827199 | 1.784638e-54 | -8.615850e-47 |
| Msa0366470 | Msa1306190 | 0.803389 | 3.567694e-49 | -8.615850e-47 |
| Msa0366470 | Msa1307740 | 0.810921 | 9.063329e-51 | -8.615850e-47 |
| Msa0366470 | Msa1309880 | 0.829878 | 4.023771e-55 | -8.615850e-47 |
| Msa0366470 | Msa1311150 | 0.804617 | 1.982708e-49 | -8.615850e-47 |
| Msa0366470 | Msa1317710 | 0.828946 | 6.775199e-55 | -8.615850e-47 |
| Msa0366470 | Msa1340250 | 0.802753 | 4.829555e-49 | -8.615850e-47 |
| Msa0366470 | Msa1371580 | 0.811995 | 5.297396e-51 | -8.615850e-47 |
| Msa0366470 | Msa1379710 | 0.811461 | 6.920888e-51 | -8.615850e-47 |
| Msa0366470 | Msa1405470 | 0.814188 | 1.749307e-51 | -8.615850e-47 |
| Msa0366470 | Msa1405650 | 0.810817 | 9.546972e-51 | -8.615850e-47 |
| Msa0366470 | Msa1438820 | 0.808703 | 2.719246e-50 | -8.615850e-47 |
| Msa0366470 | Msa1444250 | -0.803288 | 3.744789e-49 | -8.615850e-47 |
| Msa0366470 | Msa1445250 | 0.820223 | 7.683464e-53 | -8.615850e-47 |
| Msa0366470 | Msa1450020 | 0.806338 | 8.636134e-50 | -8.615850e-47 |
| Msa0366470 | Msa1457020 | 0.822566 | 2.211501e-53 | -8.615850e-47 |
| Msa0243470 | Msa0366470 | 0.849110 | 3.989921e-60 | -8.615850e-47 |
| Msa0278670 | Msa0366470 | 0.832475 | 9.254208e-56 | -8.615850e-47 |
| Msa0281940 | Msa0366470 | 0.852307 | 5.031794e-61 | -8.615850e-47 |
| Msa0282170 | Msa0366470 | 0.810185 | 1.307057e-50 | -8.615850e-47 |
| Msa0295850 | Msa0366470 | 0.821753 | 3.415178e-53 | -8.615850e-47 |
| Msa0318070 | Msa0366470 | 0.820787 | 5.702382e-53 | -8.615850e-47 |
| Msa0329550 | Msa0366470 | 0.808999 | 2.349554e-50 | -8.615850e-47 |
| Msa0363440 | Msa0366470 | 0.804447 | 2.150640e-49 | -8.615850e-47 |
| Msa0363460 | Msa0366470 | 0.833824 | 4.272224e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366470 | MtrunA17_Chr3g0107481 | 91.228 | 114 | 2 | 1 | 1 | 106 | 1 | 114 | 1.61e-72 | 211 |
| Msa0366470 | MtrunA17_Chr4g0013261 | 30.357 | 112 | 70 | 1 | 3 | 106 | 5 | 116 | 1.09e-15 | 67.0 |
| Msa0366470 | MtrunA17_Chr4g0013251 | 32.143 | 112 | 68 | 1 | 3 | 106 | 5 | 116 | 3.51e-15 | 65.9 |
| Msa0366470 | MtrunA17_Chr4g0013001 | 33.036 | 112 | 66 | 2 | 3 | 106 | 5 | 115 | 1.79e-13 | 61.6 |
| Msa0366470 | MtrunA17_Chr4g0012961 | 32.143 | 112 | 67 | 2 | 3 | 106 | 5 | 115 | 3.52e-13 | 60.8 |
| Msa0366470 | MtrunA17_Chr7g0244831 | 30.275 | 109 | 67 | 1 | 7 | 106 | 11 | 119 | 1.13e-12 | 59.3 |
| Msa0366470 | MtrunA17_Chr4g0012951 | 32.743 | 113 | 65 | 3 | 3 | 106 | 5 | 115 | 2.08e-12 | 58.5 |
| Msa0366470 | MtrunA17_Chr4g0012991 | 33.036 | 112 | 66 | 2 | 3 | 106 | 60 | 170 | 2.66e-12 | 59.7 |
| Msa0366470 | MtrunA17_Chr4g0012901 | 28.319 | 113 | 72 | 1 | 3 | 106 | 9 | 121 | 5.38e-11 | 55.1 |
| Msa0366470 | MtrunA17_Chr4g0013211 | 31.250 | 112 | 59 | 3 | 8 | 106 | 9 | 115 | 7.44e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACGATCTGGTGAATTTC+TGG | 0.174462 | 3_1:+61355319 | Msa0366470:three_prime_UTR |
| TCACTATTTGATAATTGATA+TGG | 0.258578 | 3_1:+61355381 | Msa0366470:three_prime_UTR |
| TGGTTGTTTGCTCACATGTT+AGG | 0.265416 | 3_1:-61354387 | None:intergenic |
| CTGGAAGATTATTCATTCTA+TGG | 0.285035 | 3_1:+61355228 | Msa0366470:three_prime_UTR |
| TATGCATGGAGTTAGGTATA+TGG | 0.373367 | 3_1:-61354407 | None:intergenic |
| CATAGGGTATGCATGGAGTT+AGG | 0.420963 | 3_1:-61354414 | None:intergenic |
| AATCAACTTGGTGACCTTTG+TGG | 0.424889 | 3_1:+61354586 | Msa0366470:CDS |
| TGCATACCCTATGGAATGTT+GGG | 0.441117 | 3_1:+61354424 | Msa0366470:CDS |
| TTCGAGTATAATCAATCAAA+GGG | 0.448333 | 3_1:-61354561 | None:intergenic |
| GGTTGTTTGCTCACATGTTA+GGG | 0.451206 | 3_1:-61354386 | None:intergenic |
| ATCAATTATCAAATAGTGAA+AGG | 0.476965 | 3_1:-61355377 | None:intergenic |
| TGATCGTATATGTAACGATC+TGG | 0.493714 | 3_1:+61355308 | Msa0366470:three_prime_UTR |
| ATGCATACCCTATGGAATGT+TGG | 0.496045 | 3_1:+61354423 | Msa0366470:CDS |
| ATGCCATTGCATTCAAGATA+CGG | 0.502113 | 3_1:+61354528 | Msa0366470:CDS |
| TTGTTACTAGTAGCTAGTGC+TGG | 0.502388 | 3_1:+61355209 | Msa0366470:three_prime_UTR |
| CTAACTCCATGCATACCCTA+TGG | 0.502618 | 3_1:+61354415 | Msa0366470:CDS |
| ATAAATGCTGCATATAAGAA+TGG | 0.504762 | 3_1:+61354487 | Msa0366470:CDS |
| TACTTATTGCAATCAGTGGA+GGG | 0.513169 | 3_1:-61354634 | None:intergenic |
| AGTGGAGGGGTAAACTTTGA+AGG | 0.513675 | 3_1:-61354620 | None:intergenic |
| TCAATTATCAAATAGTGAAA+GGG | 0.518469 | 3_1:-61355376 | None:intergenic |
| ATTCGAGTATAATCAATCAA+AGG | 0.524459 | 3_1:-61354562 | None:intergenic |
| AACAAATAGTCTTGCTCTCG+AGG | 0.528711 | 3_1:-61355191 | None:intergenic |
| AACATTCCATAGGGTATGCA+TGG | 0.530105 | 3_1:-61354421 | None:intergenic |
| CAGAGTGAAGTAAGCAGCAA+AGG | 0.532423 | 3_1:+61355156 | Msa0366470:intron |
| GGCTTACTTATTGCAATCAG+TGG | 0.540723 | 3_1:-61354638 | None:intergenic |
| CAGCCGTATCTTGAATGCAA+TGG | 0.548360 | 3_1:-61354531 | None:intergenic |
| TATACTCGAATTAATCAACT+TGG | 0.560190 | 3_1:+61354574 | Msa0366470:CDS |
| TTACTTATTGCAATCAGTGG+AGG | 0.569382 | 3_1:-61354635 | None:intergenic |
| ACTCCCTCCCAACATTCCAT+AGG | 0.570029 | 3_1:-61354431 | None:intergenic |
| CTCCCTCCCAACATTCCATA+GGG | 0.578201 | 3_1:-61354430 | None:intergenic |
| TACCCTATGGAATGTTGGGA+GGG | 0.587169 | 3_1:+61354428 | Msa0366470:CDS |
| ACTTATTGCAATCAGTGGAG+GGG | 0.616402 | 3_1:-61354633 | None:intergenic |
| GTGGAGGGGTAAACTTTGAA+GGG | 0.636043 | 3_1:-61354619 | None:intergenic |
| AAAGATATATGGTTGACCAT+CGG | 0.652020 | 3_1:+61355435 | Msa0366470:three_prime_UTR |
| ATACCCTATGGAATGTTGGG+AGG | 0.662835 | 3_1:+61354427 | Msa0366470:CDS |
| AGGGACATTTAGATCCACAA+AGG | 0.694514 | 3_1:-61354600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATTGAAGAGAAAATA+TGG | - | chr3_1:61355045-61355064 | None:intergenic | 15.0% |
| !! | TTATAATTGAAGAGAAAATA+TGG | - | chr3_1:61355045-61355064 | None:intergenic | 15.0% |
| !!! | TATTTACTTGGTTTGTTTTT+AGG | + | chr3_1:61354700-61354719 | Msa0366470:intron | 20.0% |
| !!! | AATTTTAACTTCTTAACTTG+TGG | + | chr3_1:61354823-61354842 | Msa0366470:intron | 20.0% |
| !! | ATGATTTATTTGATTCATGT+TGG | + | chr3_1:61354971-61354990 | Msa0366470:intron | 20.0% |
| !! | TCAATTATCAAATAGTGAAA+GGG | - | chr3_1:61355379-61355398 | None:intergenic | 20.0% |
| !! | ATCAATTATCAAATAGTGAA+AGG | - | chr3_1:61355380-61355399 | None:intergenic | 20.0% |
| !!! | TCACTATTTGATAATTGATA+TGG | + | chr3_1:61355381-61355400 | Msa0366470:three_prime_UTR | 20.0% |
| !!! | TATTTACTTGGTTTGTTTTT+AGG | + | chr3_1:61354700-61354719 | Msa0366470:intron | 20.0% |
| !!! | AATTTTAACTTCTTAACTTG+TGG | + | chr3_1:61354823-61354842 | Msa0366470:intron | 20.0% |
| !! | ATGATTTATTTGATTCATGT+TGG | + | chr3_1:61354971-61354990 | Msa0366470:intron | 20.0% |
| !! | TCAATTATCAAATAGTGAAA+GGG | - | chr3_1:61355379-61355398 | None:intergenic | 20.0% |
| !! | ATCAATTATCAAATAGTGAA+AGG | - | chr3_1:61355380-61355399 | None:intergenic | 20.0% |
| !!! | TCACTATTTGATAATTGATA+TGG | + | chr3_1:61355381-61355400 | Msa0366470:three_prime_UTR | 20.0% |
| !!! | GGTTGCATTATTTGTTTTAA+TGG | + | chr3_1:61354327-61354346 | Msa0366470:CDS | 25.0% |
| ! | ATAAATGCTGCATATAAGAA+TGG | + | chr3_1:61354487-61354506 | Msa0366470:CDS | 25.0% |
| ! | TTCGAGTATAATCAATCAAA+GGG | - | chr3_1:61354564-61354583 | None:intergenic | 25.0% |
| ! | ATTCGAGTATAATCAATCAA+AGG | - | chr3_1:61354565-61354584 | None:intergenic | 25.0% |
| ! | TATACTCGAATTAATCAACT+TGG | + | chr3_1:61354574-61354593 | Msa0366470:CDS | 25.0% |
| ! | ACATGAATATACTAGATACA+AGG | - | chr3_1:61354670-61354689 | None:intergenic | 25.0% |
| ! | AACCAAGTAAATAGAAAAGT+TGG | - | chr3_1:61354693-61354712 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTAGGTTAA+GGG | + | chr3_1:61354707-61354726 | Msa0366470:intron | 25.0% |
| !! | TTTTGTGCTAATTAACCTAA+AGG | - | chr3_1:61354872-61354891 | None:intergenic | 25.0% |
| !! | TAATTAGCACAAAACTTTTC+AGG | + | chr3_1:61354878-61354897 | Msa0366470:intron | 25.0% |
| ! | TAGCAAACATATCCTAATTA+TGG | + | chr3_1:61355116-61355135 | Msa0366470:intron | 25.0% |
| ! | TCACATCAAAATCCATAATT+AGG | - | chr3_1:61355131-61355150 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTTCTGAGAAAAA+CGG | + | chr3_1:61355411-61355430 | Msa0366470:intron | 25.0% |
| ! | AGAAAAACGGTAAAGATATA+TGG | + | chr3_1:61355424-61355443 | Msa0366470:intron | 25.0% |
| !!! | GGTTGCATTATTTGTTTTAA+TGG | + | chr3_1:61354327-61354346 | Msa0366470:CDS | 25.0% |
| ! | ATAAATGCTGCATATAAGAA+TGG | + | chr3_1:61354487-61354506 | Msa0366470:CDS | 25.0% |
| ! | TTCGAGTATAATCAATCAAA+GGG | - | chr3_1:61354564-61354583 | None:intergenic | 25.0% |
| ! | ATTCGAGTATAATCAATCAA+AGG | - | chr3_1:61354565-61354584 | None:intergenic | 25.0% |
| ! | TATACTCGAATTAATCAACT+TGG | + | chr3_1:61354574-61354593 | Msa0366470:CDS | 25.0% |
| ! | ACATGAATATACTAGATACA+AGG | - | chr3_1:61354670-61354689 | None:intergenic | 25.0% |
| ! | AACCAAGTAAATAGAAAAGT+TGG | - | chr3_1:61354693-61354712 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTAGGTTAA+GGG | + | chr3_1:61354707-61354726 | Msa0366470:intron | 25.0% |
| !! | TTTTGTGCTAATTAACCTAA+AGG | - | chr3_1:61354872-61354891 | None:intergenic | 25.0% |
| !! | TAATTAGCACAAAACTTTTC+AGG | + | chr3_1:61354878-61354897 | Msa0366470:intron | 25.0% |
| ! | TAGCAAACATATCCTAATTA+TGG | + | chr3_1:61355116-61355135 | Msa0366470:intron | 25.0% |
| ! | TCACATCAAAATCCATAATT+AGG | - | chr3_1:61355131-61355150 | None:intergenic | 25.0% |
| !!! | TTTTCCTTTTCTGAGAAAAA+CGG | + | chr3_1:61355411-61355430 | Msa0366470:intron | 25.0% |
| ! | AGAAAAACGGTAAAGATATA+TGG | + | chr3_1:61355424-61355443 | Msa0366470:intron | 25.0% |
| CATTTATAGAGTGAATACCT+TGG | - | chr3_1:61354474-61354493 | None:intergenic | 30.0% | |
| ! | GTCCAACTTTTCTATTTACT+TGG | + | chr3_1:61354688-61354707 | Msa0366470:intron | 30.0% |
| !!! | CTTGGTTTGTTTTTAGGTTA+AGG | + | chr3_1:61354706-61354725 | Msa0366470:intron | 30.0% |
| TTTCTTATCTTGTGCCTTTA+GGG | - | chr3_1:61354748-61354767 | None:intergenic | 30.0% | |
| ATTTCTTATCTTGTGCCTTT+AGG | - | chr3_1:61354749-61354768 | None:intergenic | 30.0% | |
| AGATCTTTATCACACCATTA+TGG | + | chr3_1:61354901-61354920 | Msa0366470:intron | 30.0% | |
| CTGGAAGATTATTCATTCTA+TGG | + | chr3_1:61355228-61355247 | Msa0366470:three_prime_UTR | 30.0% | |
| !! | TTTACCGTTTTTCTCAGAAA+AGG | - | chr3_1:61355418-61355437 | None:intergenic | 30.0% |
| AAAGATATATGGTTGACCAT+CGG | + | chr3_1:61355435-61355454 | Msa0366470:three_prime_UTR | 30.0% | |
| CATTTATAGAGTGAATACCT+TGG | - | chr3_1:61354474-61354493 | None:intergenic | 30.0% | |
| ! | GTCCAACTTTTCTATTTACT+TGG | + | chr3_1:61354688-61354707 | Msa0366470:intron | 30.0% |
| !!! | CTTGGTTTGTTTTTAGGTTA+AGG | + | chr3_1:61354706-61354725 | Msa0366470:intron | 30.0% |
| TTTCTTATCTTGTGCCTTTA+GGG | - | chr3_1:61354748-61354767 | None:intergenic | 30.0% | |
| ATTTCTTATCTTGTGCCTTT+AGG | - | chr3_1:61354749-61354768 | None:intergenic | 30.0% | |
| AGATCTTTATCACACCATTA+TGG | + | chr3_1:61354901-61354920 | Msa0366470:intron | 30.0% | |
| CTGGAAGATTATTCATTCTA+TGG | + | chr3_1:61355228-61355247 | Msa0366470:three_prime_UTR | 30.0% | |
| !! | TTTACCGTTTTTCTCAGAAA+AGG | - | chr3_1:61355418-61355437 | None:intergenic | 30.0% |
| AAAGATATATGGTTGACCAT+CGG | + | chr3_1:61355435-61355454 | Msa0366470:three_prime_UTR | 30.0% | |
| TATGCATGGAGTTAGGTATA+TGG | - | chr3_1:61354410-61354429 | None:intergenic | 35.0% | |
| ATGCCATTGCATTCAAGATA+CGG | + | chr3_1:61354528-61354547 | Msa0366470:CDS | 35.0% | |
| TACTTATTGCAATCAGTGGA+GGG | - | chr3_1:61354637-61354656 | None:intergenic | 35.0% | |
| TTACTTATTGCAATCAGTGG+AGG | - | chr3_1:61354638-61354657 | None:intergenic | 35.0% | |
| ATACTAGATACAAGGAGAGA+AGG | - | chr3_1:61354662-61354681 | None:intergenic | 35.0% | |
| ! | TCATGCTAACTTTTGTCCTT+GGG | - | chr3_1:61354849-61354868 | None:intergenic | 35.0% |
| CAAAAGTTAGCATGACCTTT+AGG | + | chr3_1:61354854-61354873 | Msa0366470:intron | 35.0% | |
| TGCAACTGTTTAGACCATAA+TGG | - | chr3_1:61354918-61354937 | None:intergenic | 35.0% | |
| TGATCGTATATGTAACGATC+TGG | + | chr3_1:61355308-61355327 | Msa0366470:three_prime_UTR | 35.0% | |
| TATGCATGGAGTTAGGTATA+TGG | - | chr3_1:61354410-61354429 | None:intergenic | 35.0% | |
| ATGCCATTGCATTCAAGATA+CGG | + | chr3_1:61354528-61354547 | Msa0366470:CDS | 35.0% | |
| TACTTATTGCAATCAGTGGA+GGG | - | chr3_1:61354637-61354656 | None:intergenic | 35.0% | |
| TTACTTATTGCAATCAGTGG+AGG | - | chr3_1:61354638-61354657 | None:intergenic | 35.0% | |
| ATACTAGATACAAGGAGAGA+AGG | - | chr3_1:61354662-61354681 | None:intergenic | 35.0% | |
| ! | TCATGCTAACTTTTGTCCTT+GGG | - | chr3_1:61354849-61354868 | None:intergenic | 35.0% |
| CAAAAGTTAGCATGACCTTT+AGG | + | chr3_1:61354854-61354873 | Msa0366470:intron | 35.0% | |
| TGCAACTGTTTAGACCATAA+TGG | - | chr3_1:61354918-61354937 | None:intergenic | 35.0% | |
| TGATCGTATATGTAACGATC+TGG | + | chr3_1:61355308-61355327 | Msa0366470:three_prime_UTR | 35.0% | |
| GGTTGTTTGCTCACATGTTA+GGG | - | chr3_1:61354389-61354408 | None:intergenic | 40.0% | |
| TGGTTGTTTGCTCACATGTT+AGG | - | chr3_1:61354390-61354409 | None:intergenic | 40.0% | |
| AACATTCCATAGGGTATGCA+TGG | - | chr3_1:61354424-61354443 | None:intergenic | 40.0% | |
| ATGCATACCCTATGGAATGT+TGG | + | chr3_1:61354423-61354442 | Msa0366470:CDS | 40.0% | |
| TGCATACCCTATGGAATGTT+GGG | + | chr3_1:61354424-61354443 | Msa0366470:CDS | 40.0% | |
| TGAATACCTTGGCAACACAA+GGG | - | chr3_1:61354463-61354482 | None:intergenic | 40.0% | |
| ! | AATCAACTTGGTGACCTTTG+TGG | + | chr3_1:61354586-61354605 | Msa0366470:CDS | 40.0% |
| AGGGACATTTAGATCCACAA+AGG | - | chr3_1:61354603-61354622 | None:intergenic | 40.0% | |
| ACTTATTGCAATCAGTGGAG+GGG | - | chr3_1:61354636-61354655 | None:intergenic | 40.0% | |
| GGCTTACTTATTGCAATCAG+TGG | - | chr3_1:61354641-61354660 | None:intergenic | 40.0% | |
| ! | GTCATGCTAACTTTTGTCCT+TGG | - | chr3_1:61354850-61354869 | None:intergenic | 40.0% |
| ATGGTCTAAACAGTTGCATG+TGG | + | chr3_1:61354920-61354939 | Msa0366470:intron | 40.0% | |
| AACAGTTGCATGTGGATACT+CGG | + | chr3_1:61354928-61354947 | Msa0366470:intron | 40.0% | |
| ! | AACAAATAGTCTTGCTCTCG+AGG | - | chr3_1:61355194-61355213 | None:intergenic | 40.0% |
| TTGTTACTAGTAGCTAGTGC+TGG | + | chr3_1:61355209-61355228 | Msa0366470:three_prime_UTR | 40.0% | |
| GTAACGATCTGGTGAATTTC+TGG | + | chr3_1:61355319-61355338 | Msa0366470:three_prime_UTR | 40.0% | |
| GGTTGTTTGCTCACATGTTA+GGG | - | chr3_1:61354389-61354408 | None:intergenic | 40.0% | |
| TGGTTGTTTGCTCACATGTT+AGG | - | chr3_1:61354390-61354409 | None:intergenic | 40.0% | |
| AACATTCCATAGGGTATGCA+TGG | - | chr3_1:61354424-61354443 | None:intergenic | 40.0% | |
| ATGCATACCCTATGGAATGT+TGG | + | chr3_1:61354423-61354442 | Msa0366470:CDS | 40.0% | |
| TGCATACCCTATGGAATGTT+GGG | + | chr3_1:61354424-61354443 | Msa0366470:CDS | 40.0% | |
| TGAATACCTTGGCAACACAA+GGG | - | chr3_1:61354463-61354482 | None:intergenic | 40.0% | |
| ! | AATCAACTTGGTGACCTTTG+TGG | + | chr3_1:61354586-61354605 | Msa0366470:CDS | 40.0% |
| AGGGACATTTAGATCCACAA+AGG | - | chr3_1:61354603-61354622 | None:intergenic | 40.0% | |
| ACTTATTGCAATCAGTGGAG+GGG | - | chr3_1:61354636-61354655 | None:intergenic | 40.0% | |
| GGCTTACTTATTGCAATCAG+TGG | - | chr3_1:61354641-61354660 | None:intergenic | 40.0% | |
| ! | GTCATGCTAACTTTTGTCCT+TGG | - | chr3_1:61354850-61354869 | None:intergenic | 40.0% |
| ATGGTCTAAACAGTTGCATG+TGG | + | chr3_1:61354920-61354939 | Msa0366470:intron | 40.0% | |
| AACAGTTGCATGTGGATACT+CGG | + | chr3_1:61354928-61354947 | Msa0366470:intron | 40.0% | |
| ! | AACAAATAGTCTTGCTCTCG+AGG | - | chr3_1:61355194-61355213 | None:intergenic | 40.0% |
| TTGTTACTAGTAGCTAGTGC+TGG | + | chr3_1:61355209-61355228 | Msa0366470:three_prime_UTR | 40.0% | |
| GTAACGATCTGGTGAATTTC+TGG | + | chr3_1:61355319-61355338 | Msa0366470:three_prime_UTR | 40.0% | |
| CATAGGGTATGCATGGAGTT+AGG | - | chr3_1:61354417-61354436 | None:intergenic | 45.0% | |
| CTAACTCCATGCATACCCTA+TGG | + | chr3_1:61354415-61354434 | Msa0366470:CDS | 45.0% | |
| ATACCCTATGGAATGTTGGG+AGG | + | chr3_1:61354427-61354446 | Msa0366470:CDS | 45.0% | |
| TACCCTATGGAATGTTGGGA+GGG | + | chr3_1:61354428-61354447 | Msa0366470:CDS | 45.0% | |
| GTGAATACCTTGGCAACACA+AGG | - | chr3_1:61354464-61354483 | None:intergenic | 45.0% | |
| CAGCCGTATCTTGAATGCAA+TGG | - | chr3_1:61354534-61354553 | None:intergenic | 45.0% | |
| GTGGAGGGGTAAACTTTGAA+GGG | - | chr3_1:61354622-61354641 | None:intergenic | 45.0% | |
| AGTGGAGGGGTAAACTTTGA+AGG | - | chr3_1:61354623-61354642 | None:intergenic | 45.0% | |
| AATGCTACCTTGTGCCCTAA+AGG | + | chr3_1:61354731-61354750 | Msa0366470:intron | 45.0% | |
| !! | ACTTCTTAACTTGTGGCCCA+AGG | + | chr3_1:61354830-61354849 | Msa0366470:intron | 45.0% |
| CAGAGTGAAGTAAGCAGCAA+AGG | + | chr3_1:61355156-61355175 | Msa0366470:intron | 45.0% | |
| CATAGGGTATGCATGGAGTT+AGG | - | chr3_1:61354417-61354436 | None:intergenic | 45.0% | |
| CTAACTCCATGCATACCCTA+TGG | + | chr3_1:61354415-61354434 | Msa0366470:CDS | 45.0% | |
| ATACCCTATGGAATGTTGGG+AGG | + | chr3_1:61354427-61354446 | Msa0366470:CDS | 45.0% | |
| TACCCTATGGAATGTTGGGA+GGG | + | chr3_1:61354428-61354447 | Msa0366470:CDS | 45.0% | |
| GTGAATACCTTGGCAACACA+AGG | - | chr3_1:61354464-61354483 | None:intergenic | 45.0% | |
| CAGCCGTATCTTGAATGCAA+TGG | - | chr3_1:61354534-61354553 | None:intergenic | 45.0% | |
| GTGGAGGGGTAAACTTTGAA+GGG | - | chr3_1:61354622-61354641 | None:intergenic | 45.0% | |
| AGTGGAGGGGTAAACTTTGA+AGG | - | chr3_1:61354623-61354642 | None:intergenic | 45.0% | |
| AATGCTACCTTGTGCCCTAA+AGG | + | chr3_1:61354731-61354750 | Msa0366470:intron | 45.0% | |
| !! | ACTTCTTAACTTGTGGCCCA+AGG | + | chr3_1:61354830-61354849 | Msa0366470:intron | 45.0% |
| CAGAGTGAAGTAAGCAGCAA+AGG | + | chr3_1:61355156-61355175 | Msa0366470:intron | 45.0% | |
| !!! | TTTATTTTATTTTTTCTATT+TGG | - | chr3_1:61355282-61355301 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTCTATT+TGG | - | chr3_1:61355282-61355301 | None:intergenic | 5.0% |
| CTCCCTCCCAACATTCCATA+GGG | - | chr3_1:61354433-61354452 | None:intergenic | 50.0% | |
| ACTCCCTCCCAACATTCCAT+AGG | - | chr3_1:61354434-61354453 | None:intergenic | 50.0% | |
| GTATCACCCTTGTGTTGCCA+AGG | + | chr3_1:61354454-61354473 | Msa0366470:intron | 50.0% | |
| !! | TCTTGTGCCTTTAGGGCACA+AGG | - | chr3_1:61354741-61354760 | None:intergenic | 50.0% |
| CTCCCTCCCAACATTCCATA+GGG | - | chr3_1:61354433-61354452 | None:intergenic | 50.0% | |
| ACTCCCTCCCAACATTCCAT+AGG | - | chr3_1:61354434-61354453 | None:intergenic | 50.0% | |
| GTATCACCCTTGTGTTGCCA+AGG | + | chr3_1:61354454-61354473 | Msa0366470:intron | 50.0% | |
| !! | TCTTGTGCCTTTAGGGCACA+AGG | - | chr3_1:61354741-61354760 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61354319 | 61355458 | 61354319 | ID=Msa0366470;Name=Msa0366470 |
| chr3_1 | mRNA | 61354319 | 61355458 | 61354319 | ID=Msa0366470-mRNA-1;Parent=Msa0366470;Name=Msa0366470-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.66|0.5|1|0|0|4|267|106 |
| chr3_1 | exon | 61354319 | 61354451 | 61354319 | ID=Msa0366470-mRNA-1:exon:11865;Parent=Msa0366470-mRNA-1 |
| chr3_1 | exon | 61354476 | 61354653 | 61354476 | ID=Msa0366470-mRNA-1:exon:11866;Parent=Msa0366470-mRNA-1 |
| chr3_1 | exon | 61355159 | 61355402 | 61355159 | ID=Msa0366470-mRNA-1:exon:11867;Parent=Msa0366470-mRNA-1 |
| chr3_1 | exon | 61355426 | 61355458 | 61355426 | ID=Msa0366470-mRNA-1:exon:11868;Parent=Msa0366470-mRNA-1 |
| chr3_1 | CDS | 61354319 | 61354451 | 61354319 | ID=Msa0366470-mRNA-1:cds;Parent=Msa0366470-mRNA-1 |
| chr3_1 | CDS | 61354476 | 61354653 | 61354476 | ID=Msa0366470-mRNA-1:cds;Parent=Msa0366470-mRNA-1 |
| chr3_1 | CDS | 61355159 | 61355168 | 61355159 | ID=Msa0366470-mRNA-1:cds;Parent=Msa0366470-mRNA-1 |
| chr3_1 | three_prime_UTR | 61355169 | 61355402 | 61355169 | ID=Msa0366470-mRNA-1:three_prime_utr;Parent=Msa0366470-mRNA-1 |
| chr3_1 | three_prime_UTR | 61355426 | 61355458 | 61355426 | ID=Msa0366470-mRNA-1:three_prime_utr;Parent=Msa0366470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
