Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091230 | XP_013470342.1 | 97.833 | 600 | 8 | 2 | 1 | 598 | 152 | 748 | 0.0 | 1214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091230 | sp|A0A178VBJ0|APSR1_ARATH | 30.490 | 469 | 278 | 9 | 120 | 574 | 199 | 633 | 8.05e-58 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091230 | A0A072W2C8 | 97.833 | 600 | 8 | 2 | 1 | 598 | 152 | 748 | 0.0 | 1214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044520 | Msa0091230 | 0.908619 | 1.401704e-81 | -8.615850e-47 |
| Msa0091230 | Msa0909760 | 0.810878 | 9.260835e-51 | -8.615850e-47 |
| Msa0091230 | Msa0966710 | 0.803761 | 2.987695e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091230 | MtrunA17_Chr1g0211271 | 97.833 | 600 | 8 | 2 | 1 | 598 | 152 | 748 | 0.0 | 1214 |
| Msa0091230 | MtrunA17_Chr3g0118401 | 31.549 | 523 | 274 | 15 | 22 | 466 | 176 | 692 | 7.21e-61 | 216 |
| Msa0091230 | MtrunA17_Chr5g0405741 | 27.778 | 468 | 308 | 7 | 121 | 582 | 204 | 647 | 6.63e-55 | 197 |
| Msa0091230 | MtrunA17_Chr5g0440551 | 35.165 | 364 | 202 | 6 | 121 | 457 | 311 | 667 | 5.63e-54 | 196 |
| Msa0091230 | MtrunA17_Chr4g0072011 | 29.848 | 526 | 274 | 15 | 2 | 456 | 161 | 662 | 5.27e-53 | 193 |
| Msa0091230 | MtrunA17_Chr3g0124841 | 27.802 | 464 | 307 | 8 | 117 | 566 | 450 | 899 | 3.05e-49 | 184 |
| Msa0091230 | MtrunA17_Chr3g0139411 | 25.044 | 571 | 394 | 12 | 8 | 572 | 164 | 706 | 1.18e-45 | 172 |
| Msa0091230 | MtrunA17_Chr2g0298171 | 36.525 | 282 | 164 | 4 | 123 | 393 | 534 | 811 | 1.25e-43 | 167 |
| Msa0091230 | MtrunA17_Chr5g0448571 | 28.190 | 525 | 329 | 13 | 22 | 520 | 237 | 739 | 3.70e-43 | 165 |
| Msa0091230 | MtrunA17_Chr7g0250681 | 27.310 | 487 | 312 | 11 | 84 | 556 | 367 | 825 | 4.55e-43 | 165 |
| Msa0091230 | MtrunA17_Chr2g0331821 | 27.074 | 458 | 301 | 10 | 123 | 572 | 322 | 754 | 4.14e-42 | 162 |
| Msa0091230 | MtrunA17_Chr8g0335341 | 28.027 | 446 | 294 | 8 | 121 | 556 | 277 | 705 | 6.46e-41 | 158 |
| Msa0091230 | MtrunA17_Chr3g0130761 | 26.761 | 568 | 362 | 13 | 22 | 566 | 238 | 774 | 6.18e-38 | 149 |
| Msa0091230 | MtrunA17_Chr4g0004471 | 26.201 | 458 | 290 | 13 | 122 | 566 | 124 | 546 | 1.79e-35 | 140 |
| Msa0091230 | MtrunA17_Chr2g0303521 | 25.561 | 446 | 300 | 7 | 120 | 561 | 207 | 624 | 6.08e-33 | 134 |
| Msa0091230 | MtrunA17_Chr3g0143731 | 28.286 | 350 | 213 | 8 | 125 | 464 | 279 | 600 | 3.14e-31 | 129 |
| Msa0091230 | MtrunA17_Chr8g0382551 | 36.994 | 173 | 86 | 2 | 120 | 271 | 267 | 437 | 3.71e-22 | 99.8 |
| Msa0091230 | MtrunA17_Chr8g0382541 | 30.769 | 169 | 113 | 2 | 297 | 465 | 1 | 165 | 4.20e-19 | 87.0 |
| Msa0091230 | MtrunA17_Chr1g0208081 | 49.412 | 85 | 43 | 0 | 213 | 297 | 1 | 85 | 1.18e-18 | 82.0 |
| Msa0091230 | MtrunA17_Chr4g0052471 | 28.061 | 196 | 131 | 5 | 125 | 317 | 8 | 196 | 3.02e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0091230 | AT1G21740.1 | 29.921 | 508 | 327 | 7 | 71 | 566 | 451 | 941 | 9.86e-60 | 215 |
| Msa0091230 | AT3G51290.3 | 30.490 | 469 | 278 | 9 | 120 | 574 | 199 | 633 | 8.19e-59 | 208 |
| Msa0091230 | AT3G51290.2 | 29.959 | 484 | 291 | 9 | 120 | 589 | 199 | 648 | 4.54e-58 | 208 |
| Msa0091230 | AT3G51290.1 | 30.064 | 469 | 274 | 10 | 120 | 574 | 199 | 627 | 3.87e-55 | 197 |
| Msa0091230 | AT4G39790.1 | 36.212 | 359 | 194 | 7 | 120 | 449 | 250 | 602 | 3.12e-54 | 196 |
| Msa0091230 | AT2G27090.2 | 30.092 | 545 | 276 | 16 | 2 | 470 | 160 | 675 | 7.18e-54 | 196 |
| Msa0091230 | AT2G27090.1 | 30.092 | 545 | 276 | 16 | 2 | 470 | 160 | 675 | 7.18e-54 | 196 |
| Msa0091230 | AT2G19090.1 | 32.759 | 464 | 240 | 9 | 123 | 568 | 387 | 796 | 2.92e-53 | 195 |
| Msa0091230 | AT1G77500.1 | 29.128 | 436 | 285 | 5 | 121 | 556 | 449 | 860 | 6.62e-52 | 192 |
| Msa0091230 | AT4G30130.3 | 32.685 | 514 | 257 | 16 | 7 | 456 | 153 | 641 | 8.97e-50 | 184 |
| Msa0091230 | AT4G30130.1 | 32.685 | 514 | 257 | 16 | 7 | 456 | 153 | 641 | 8.97e-50 | 184 |
| Msa0091230 | AT4G35240.4 | 26.667 | 615 | 326 | 18 | 18 | 567 | 274 | 828 | 4.36e-48 | 180 |
| Msa0091230 | AT4G35240.3 | 26.667 | 615 | 326 | 18 | 18 | 567 | 274 | 828 | 4.36e-48 | 180 |
| Msa0091230 | AT4G35240.2 | 26.667 | 615 | 326 | 18 | 18 | 567 | 274 | 828 | 5.38e-48 | 180 |
| Msa0091230 | AT4G35240.1 | 26.667 | 615 | 326 | 18 | 18 | 567 | 274 | 828 | 5.38e-48 | 180 |
| Msa0091230 | AT1G02110.1 | 27.599 | 529 | 313 | 12 | 45 | 556 | 210 | 685 | 5.52e-45 | 170 |
| Msa0091230 | AT3G60320.1 | 27.565 | 497 | 298 | 11 | 85 | 556 | 319 | 778 | 8.59e-41 | 159 |
| Msa0091230 | AT2G17110.1 | 30.277 | 469 | 279 | 9 | 18 | 452 | 179 | 633 | 1.83e-40 | 157 |
| Msa0091230 | AT1G52320.1 | 24.000 | 525 | 344 | 9 | 57 | 571 | 279 | 758 | 5.04e-38 | 150 |
| Msa0091230 | AT1G52320.2 | 24.046 | 524 | 343 | 9 | 57 | 570 | 302 | 780 | 6.86e-38 | 150 |
| Msa0091230 | AT1G52320.5 | 24.046 | 524 | 343 | 9 | 57 | 570 | 302 | 780 | 6.86e-38 | 150 |
| Msa0091230 | AT1G52320.3 | 24.160 | 476 | 320 | 7 | 106 | 571 | 11 | 455 | 1.08e-36 | 143 |
| Msa0091230 | AT1G52320.4 | 24.160 | 476 | 320 | 7 | 106 | 571 | 11 | 455 | 1.08e-36 | 143 |
| Msa0091230 | AT4G30130.4 | 34.072 | 361 | 185 | 10 | 7 | 323 | 153 | 504 | 3.03e-31 | 128 |
| Msa0091230 | AT4G30130.2 | 34.072 | 361 | 185 | 10 | 7 | 323 | 153 | 504 | 3.03e-31 | 128 |
| Msa0091230 | AT5G54480.1 | 27.528 | 356 | 217 | 8 | 220 | 570 | 400 | 719 | 1.10e-29 | 125 |
| Msa0091230 | AT2G34670.2 | 23.236 | 581 | 376 | 15 | 7 | 556 | 123 | 664 | 7.16e-29 | 122 |
| Msa0091230 | AT1G20530.1 | 26.611 | 357 | 224 | 5 | 122 | 473 | 232 | 555 | 7.23e-25 | 109 |
| Msa0091230 | AT2G34670.1 | 23.060 | 464 | 293 | 13 | 7 | 443 | 123 | 549 | 6.96e-18 | 87.8 |
Find 134 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCACCACAGAGAGATTT+TGG | 0.150155 | 1_2:-73379458 | Msa0091230:CDS |
| AATGATCTATTTGATGATTA+TGG | 0.221454 | 1_2:-73378185 | Msa0091230:CDS |
| ACATTGAATGGATTGCAATT+TGG | 0.234471 | 1_2:-73376915 | Msa0091230:CDS |
| CATTGAATGGATTGCAATTT+GGG | 0.250004 | 1_2:-73376914 | Msa0091230:CDS |
| TCGAGTAAAATTCAACTTCA+TGG | 0.282119 | 1_2:+73377351 | None:intergenic |
| TGTTATTGCATTAATGAGTT+TGG | 0.311748 | 1_2:+73378295 | None:intergenic |
| AATTCCCCTTCATTCTAGTT+TGG | 0.322897 | 1_2:-73379042 | Msa0091230:CDS |
| GAAATTGTTTGAGGAGGTTA+AGG | 0.331317 | 1_2:-73378105 | Msa0091230:intron |
| ATATCGAGGACCATTTCATT+AGG | 0.339597 | 1_2:-73379112 | Msa0091230:CDS |
| TTCATTAGGGCTTATGAGTC+TGG | 0.342761 | 1_2:-73379098 | Msa0091230:CDS |
| TTGAGAAATAAGAATGTTAG+AGG | 0.343032 | 1_2:-73377852 | Msa0091230:CDS |
| GTGAGTGTTACCGTCTTATC+AGG | 0.343110 | 1_2:+73377233 | None:intergenic |
| GATTATGGAGGAATGGATTC+GGG | 0.351284 | 1_2:-73378170 | Msa0091230:CDS |
| TGAAAGATGTGAAAGCTCTT+TGG | 0.355631 | 1_2:-73377196 | Msa0091230:CDS |
| TTCAATAGTTCAACAATTTG+AGG | 0.371023 | 1_2:+73377699 | None:intergenic |
| TATCGAGGACCATTTCATTA+GGG | 0.384897 | 1_2:-73379111 | Msa0091230:CDS |
| TCGTGAAGAAGAATGCTTAA+TGG | 0.386241 | 1_2:-73377027 | Msa0091230:CDS |
| CTCTGTGGTGAAGGCATTGA+AGG | 0.387609 | 1_2:+73379467 | None:intergenic |
| TGATTATGGAGGAATGGATT+CGG | 0.388164 | 1_2:-73378171 | Msa0091230:CDS |
| TCCACTTCCTCCTCTAACTC+TGG | 0.397576 | 1_2:+73379329 | None:intergenic |
| AGGGCAGTGAGGGAGGAAGA+AGG | 0.402646 | 1_2:-73379356 | Msa0091230:CDS |
| CCAATGCCATTTCAAGTCAA+TGG | 0.408523 | 1_2:-73377308 | Msa0091230:CDS |
| GGGCAGTGAGGGAGGAAGAA+GGG | 0.421828 | 1_2:-73379355 | Msa0091230:CDS |
| GGCGGCCCATTGACTTGAAA+TGG | 0.422222 | 1_2:+73377302 | None:intergenic |
| TATGAAGGATTCTTCAAGTT+GGG | 0.435429 | 1_2:-73378219 | Msa0091230:CDS |
| TCCAGAGTTAGAGGAGGAAG+TGG | 0.438913 | 1_2:-73379330 | Msa0091230:CDS |
| AATGGATAAAAGTGATTACT+TGG | 0.441015 | 1_2:-73377009 | Msa0091230:CDS |
| TCCCCTTCATTCTAGTTTGG+AGG | 0.441439 | 1_2:-73379039 | Msa0091230:CDS |
| GTTAGAGGAGGAAGTGGAAA+GGG | 0.441445 | 1_2:-73379324 | Msa0091230:CDS |
| AGAAGGGATTCCAGAGTTAG+AGG | 0.450891 | 1_2:-73379339 | Msa0091230:CDS |
| TCTATTAGCCTCAAGCATCT+TGG | 0.450939 | 1_2:+73379064 | None:intergenic |
| ATGTGGCTAATGAAAATGTT+GGG | 0.452073 | 1_2:-73379202 | Msa0091230:CDS |
| AGCAACTCTCTCCCTTCTGC+AGG | 0.453953 | 1_2:+73379149 | None:intergenic |
| CATGGAAGTCCATGTCATCT+AGG | 0.456422 | 1_2:-73378274 | Msa0091230:CDS |
| GCAATCATCATGCAAGAGTC+TGG | 0.456649 | 1_2:-73378252 | Msa0091230:CDS |
| TCTGGCCTCATACTGTCAAA+AGG | 0.466622 | 1_2:+73379419 | None:intergenic |
| AAGAATAATAAAGAAGGTGG+TGG | 0.468056 | 1_2:-73379263 | Msa0091230:CDS |
| AGTGAAAATAGTGAGAAAGC+TGG | 0.468649 | 1_2:-73376816 | Msa0091230:CDS |
| TTGCAATCAATCTCGTGGAT+TGG | 0.469345 | 1_2:-73377489 | Msa0091230:CDS |
| AAGGGTAGAACTTGAGCATA+AGG | 0.470394 | 1_2:-73379306 | Msa0091230:CDS |
| ACTCATAAGCCCTAATGAAA+TGG | 0.472464 | 1_2:+73379102 | None:intergenic |
| TGATTGCAAAATTTATCGTA+CGG | 0.475042 | 1_2:+73377503 | None:intergenic |
| TTGAAGCCGAGCTTCATCAT+TGG | 0.475679 | 1_2:-73377454 | Msa0091230:CDS |
| GGAAGTCATTTATTAACCTT+AGG | 0.476815 | 1_2:-73378149 | Msa0091230:CDS |
| TTTCCTCCAAACTAGAATGA+AGG | 0.477927 | 1_2:+73379036 | None:intergenic |
| GAGAAAACTTGAGGTAGAGA+AGG | 0.480533 | 1_2:-73376976 | Msa0091230:CDS |
| CAAATTGTTGAACTATTGAA+AGG | 0.480895 | 1_2:-73377696 | Msa0091230:CDS |
| CAATGCCATTTCAAGTCAAT+GGG | 0.483470 | 1_2:-73377307 | Msa0091230:CDS |
| AGATCTGTATGCTGGGATCT+TGG | 0.483601 | 1_2:-73377787 | Msa0091230:CDS |
| ATTTGATGATTATGGAGGAA+TGG | 0.485602 | 1_2:-73378177 | Msa0091230:CDS |
| TAGGGCTTATGAGTCTGGTA+AGG | 0.488409 | 1_2:-73379093 | Msa0091230:CDS |
| GATTTAGATAGAAGATATGA+TGG | 0.488627 | 1_2:-73377119 | Msa0091230:CDS |
| GAATTCAGATGATGATTTGA+GGG | 0.492691 | 1_2:-73379375 | Msa0091230:CDS |
| TGATTTGAGGGCAGTGAGGG+AGG | 0.493471 | 1_2:-73379363 | Msa0091230:CDS |
| GATATGAAAGATCTGTATGC+TGG | 0.494737 | 1_2:-73377795 | Msa0091230:CDS |
| GATTGCAAAATTTATCGTAC+GGG | 0.498032 | 1_2:+73377504 | None:intergenic |
| ATGGGAAAAGAAATTGTTTG+AGG | 0.502236 | 1_2:-73378114 | Msa0091230:CDS |
| ACACAGAGGATGACATTGAA+TGG | 0.505166 | 1_2:-73376927 | Msa0091230:CDS |
| CCAAAATCTCTCTGTGGTGA+AGG | 0.507180 | 1_2:+73379458 | None:intergenic |
| TACTCGTAATATGCAACGAT+TGG | 0.509042 | 1_2:-73377277 | Msa0091230:CDS |
| TTCCTCCAAACTAGAATGAA+GGG | 0.510602 | 1_2:+73379037 | None:intergenic |
| CCATGCATATAACCTTCCTA+AGG | 0.511382 | 1_2:+73378133 | None:intergenic |
| AATCATCATCTGAATTCCTA+TGG | 0.513102 | 1_2:+73379381 | None:intergenic |
| GGAATTCAGATGATGATTTG+AGG | 0.513548 | 1_2:-73379376 | Msa0091230:CDS |
| CCTTAGGAAGGTTATATGCA+TGG | 0.516989 | 1_2:-73378133 | Msa0091230:CDS |
| CCATTGACTTGAAATGGCAT+TGG | 0.517887 | 1_2:+73377308 | None:intergenic |
| GAAGAGAAGAATAATAAAGA+AGG | 0.518314 | 1_2:-73379269 | Msa0091230:CDS |
| GATGTGGCTAATGAAAATGT+TGG | 0.520032 | 1_2:-73379203 | Msa0091230:CDS |
| TGGTAGCCATTCATAACCTC+TGG | 0.520711 | 1_2:+73379401 | None:intergenic |
| CTGGCCTCATACTGTCAAAA+GGG | 0.522430 | 1_2:+73379420 | None:intergenic |
| GTCATTTATTAACCTTAGGA+AGG | 0.527369 | 1_2:-73378145 | Msa0091230:CDS |
| CGCACGCCAATGATGAAGCT+CGG | 0.533254 | 1_2:+73377448 | None:intergenic |
| ACGTAGAAGCTCTGCATGGA+TGG | 0.535242 | 1_2:-73377391 | Msa0091230:CDS |
| TGTTGAAACGGCGAAGGCTG+TGG | 0.535339 | 1_2:-73379225 | Msa0091230:CDS |
| AAATTGTTGAACTATTGAAA+GGG | 0.537939 | 1_2:-73377695 | Msa0091230:intron |
| GTGAAAATAGTGAGAAAGCT+GGG | 0.538808 | 1_2:-73376815 | Msa0091230:CDS |
| ATTTCGTATATAGAAGATGA+TGG | 0.539840 | 1_2:-73376789 | Msa0091230:CDS |
| TCGTTGCATATTACGAGTAA+TGG | 0.540538 | 1_2:+73377281 | None:intergenic |
| GGAAAAGAAATTGTTTGAGG+AGG | 0.545354 | 1_2:-73378111 | Msa0091230:CDS |
| ATATGAAGGATTCTTCAAGT+TGG | 0.546672 | 1_2:-73378220 | Msa0091230:CDS |
| CTTAGGAAGGTTATATGCAT+GGG | 0.550042 | 1_2:-73378132 | Msa0091230:CDS |
| GATCTATTTGATGATTATGG+AGG | 0.551469 | 1_2:-73378182 | Msa0091230:CDS |
| TGATGATTTGAGGGCAGTGA+GGG | 0.554612 | 1_2:-73379366 | Msa0091230:CDS |
| TCTGGTGGTTCAAAATATGA+AGG | 0.565683 | 1_2:-73378234 | Msa0091230:CDS |
| CTTATCAGGCAACTTTCGTA+AGG | 0.566150 | 1_2:+73377247 | None:intergenic |
| GAGAAGAATAATAAAGAAGG+TGG | 0.566497 | 1_2:-73379266 | Msa0091230:CDS |
| GAAGGATTCTTCAAGTTGGG+TGG | 0.567665 | 1_2:-73378216 | Msa0091230:CDS |
| AGTTGTGAGTGGTGTTGAAA+CGG | 0.573652 | 1_2:-73379237 | Msa0091230:CDS |
| ATATGAAAGATCTGTATGCT+GGG | 0.574932 | 1_2:-73377794 | Msa0091230:CDS |
| AACGGCGAAGGCTGTGGATG+TGG | 0.577941 | 1_2:-73379219 | Msa0091230:CDS |
| ATAAAGAGCAGCAACAGAAG+AGG | 0.579662 | 1_2:-73377163 | Msa0091230:CDS |
| ACGAAAGTTGCCTGATAAGA+CGG | 0.580833 | 1_2:-73377243 | Msa0091230:CDS |
| ATGAGGCCAGAGGTTATGAA+TGG | 0.581936 | 1_2:-73379407 | Msa0091230:CDS |
| AGAATAATAAAGAAGGTGGT+GGG | 0.584710 | 1_2:-73379262 | Msa0091230:CDS |
| TCATAGATCAGAAGAAGAGT+CGG | 0.585891 | 1_2:-73377051 | Msa0091230:CDS |
| AGGTTATGAATGGCTACCAT+AGG | 0.586947 | 1_2:-73379397 | Msa0091230:CDS |
| ACATGTGAAGTATTTGACTT+CGG | 0.592384 | 1_2:+73377529 | None:intergenic |
| AGGAGATGATGAATTAAGCA+TGG | 0.594438 | 1_2:-73377832 | Msa0091230:CDS |
| ACAATCGTGGAAAATCATGT+TGG | 0.597219 | 1_2:-73377582 | Msa0091230:CDS |
| TCTAGTTTGGAGGAAATCAA+AGG | 0.598376 | 1_2:-73379029 | Msa0091230:intron |
| AGAACTTGAGCATAAGGTGG+TGG | 0.599202 | 1_2:-73379300 | Msa0091230:CDS |
| GTTCTTGATACACCTGCAGA+AGG | 0.604152 | 1_2:-73379161 | Msa0091230:CDS |
| GGCATAGACATATGATGCAT+AGG | 0.605861 | 1_2:+73379494 | None:intergenic |
| AGTTAGAGGAGGAAGTGGAA+AGG | 0.607289 | 1_2:-73379325 | Msa0091230:CDS |
| AACTCATTAATGCAATAACA+TGG | 0.609435 | 1_2:-73378292 | Msa0091230:CDS |
| TGATGATTGCCTAGATGACA+TGG | 0.612443 | 1_2:+73378265 | None:intergenic |
| GGTGAAGGCATTGAAGGTGG+TGG | 0.616383 | 1_2:+73379473 | None:intergenic |
| GACTTGAAATGGCATTGGCA+TGG | 0.616911 | 1_2:+73377313 | None:intergenic |
| AGGGCTTATGAGTCTGGTAA+GGG | 0.622828 | 1_2:-73379092 | Msa0091230:CDS |
| TTCTTGATACACCTGCAGAA+GGG | 0.629508 | 1_2:-73379160 | Msa0091230:CDS |
| TCCTCCAAACTAGAATGAAG+GGG | 0.630374 | 1_2:+73379038 | None:intergenic |
| TGAAGCTTTGAAAGATATCG+AGG | 0.638509 | 1_2:-73379126 | Msa0091230:CDS |
| TGTGGTGAAGGCATTGAAGG+TGG | 0.638795 | 1_2:+73379470 | None:intergenic |
| GACACTGAGGAGAAAACTTG+AGG | 0.643003 | 1_2:-73376985 | Msa0091230:CDS |
| AGGGATTCCAGAGTTAGAGG+AGG | 0.644039 | 1_2:-73379336 | Msa0091230:CDS |
| TGTGGCTAATGAAAATGTTG+GGG | 0.649399 | 1_2:-73379201 | Msa0091230:CDS |
| ATTGCAAAATTTATCGTACG+GGG | 0.653024 | 1_2:+73377505 | None:intergenic |
| ATGATGATTTGAGGGCAGTG+AGG | 0.653507 | 1_2:-73379367 | Msa0091230:CDS |
| GCATACGTAGAAGCTCTGCA+TGG | 0.662202 | 1_2:-73377395 | Msa0091230:CDS |
| ATCATCATGCAAGAGTCTGG+TGG | 0.664887 | 1_2:-73378249 | Msa0091230:CDS |
| AATGCAGCTTAACACAATCG+TGG | 0.665288 | 1_2:-73377595 | Msa0091230:intron |
| GGGTGTGACCAAGATGCTTG+AGG | 0.666909 | 1_2:-73379072 | Msa0091230:CDS |
| AGAAGATGATGGTTGCAATG+TGG | 0.668034 | 1_2:-73376778 | Msa0091230:CDS |
| GAGTGGTGTTGAAACGGCGA+AGG | 0.672115 | 1_2:-73379231 | Msa0091230:CDS |
| TTGCATATTACGAGTAATGG+CGG | 0.677646 | 1_2:+73377284 | None:intergenic |
| TCCCAACCAAAATCTCTCTG+TGG | 0.682232 | 1_2:+73379452 | None:intergenic |
| GGTAGAACTTGAGCATAAGG+TGG | 0.683792 | 1_2:-73379303 | Msa0091230:CDS |
| CTTAGGCTGGAGATAGCACG+CGG | 0.690858 | 1_2:-73377902 | Msa0091230:intron |
| TTGCAAAATTTATCGTACGG+GGG | 0.706211 | 1_2:+73377506 | None:intergenic |
| GGTGGTGGGAAAGTTGTGAG+TGG | 0.707125 | 1_2:-73379248 | Msa0091230:CDS |
| GTGGCTAATGAAAATGTTGG+GGG | 0.711834 | 1_2:-73379200 | Msa0091230:CDS |
| GTGATTACTTGGAGACACTG+AGG | 0.718942 | 1_2:-73376998 | Msa0091230:CDS |
| TGGCTAATGAAAATGTTGGG+GGG | 0.721992 | 1_2:-73379199 | Msa0091230:CDS |
| GTTGCATGCAAGAAACACAG+AGG | 0.798241 | 1_2:-73376941 | Msa0091230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAGAAATTCATTCTAAA+AGG | - | chr1_2:73378581-73378600 | Msa0091230:intron | 15.0% |
| !! | TGATTTAATTGTAGTGAATA+AGG | - | chr1_2:73377639-73377658 | Msa0091230:intron | 20.0% |
| !!! | AATGATCTATTTGATGATTA+TGG | - | chr1_2:73378061-73378080 | Msa0091230:intron | 20.0% |
| !! | AAATTGTTGAACTATTGAAA+GGG | - | chr1_2:73378551-73378570 | Msa0091230:intron | 20.0% |
| ! | GAAGAGAAGAATAATAAAGA+AGG | - | chr1_2:73376977-73376996 | Msa0091230:CDS | 25.0% |
| ! | AATAAGTAATCATCATACCA+TGG | + | chr1_2:73377308-73377327 | None:intergenic | 25.0% |
| !! | ATTTGGTTCATGTAATATGT+AGG | - | chr1_2:73377427-73377446 | Msa0091230:CDS | 25.0% |
| !! | AAGTTGAATTAGCTTATGTA+AGG | - | chr1_2:73377454-73377473 | Msa0091230:CDS | 25.0% |
| !! | AGTTGAATTAGCTTATGTAA+GGG | - | chr1_2:73377455-73377474 | Msa0091230:CDS | 25.0% |
| ! | TTCACTACAATTAAATCAAC+AGG | + | chr1_2:73377637-73377656 | None:intergenic | 25.0% |
| ! | TAGATTAAAACTCCTTAATC+TGG | + | chr1_2:73377792-73377811 | None:intergenic | 25.0% |
| !! | AACTTTTAATCATGGATACA+TGG | + | chr1_2:73377899-73377918 | None:intergenic | 25.0% |
| !! | ATGGTTCAAACTTTTAATCA+TGG | + | chr1_2:73377907-73377926 | None:intergenic | 25.0% |
| ! | TGTTATTGCATTAATGAGTT+TGG | + | chr1_2:73377954-73377973 | None:intergenic | 25.0% |
| ! | AACTCATTAATGCAATAACA+TGG | - | chr1_2:73377954-73377973 | Msa0091230:intron | 25.0% |
| ! | TTCGTCATAAACAGAAAATA+TGG | + | chr1_2:73378200-73378219 | None:intergenic | 25.0% |
| ! | AATGTTAGCAATATATGTCA+AGG | + | chr1_2:73378309-73378328 | None:intergenic | 25.0% |
| ! | TTGAGAAATAAGAATGTTAG+AGG | - | chr1_2:73378394-73378413 | Msa0091230:intron | 25.0% |
| ! | TTCAATAGTTCAACAATTTG+AGG | + | chr1_2:73378550-73378569 | None:intergenic | 25.0% |
| ! | CAAATTGTTGAACTATTGAA+AGG | - | chr1_2:73378550-73378569 | Msa0091230:intron | 25.0% |
| ! | TGATTGCAAAATTTATCGTA+CGG | + | chr1_2:73378746-73378765 | None:intergenic | 25.0% |
| ! | GATTTAGATAGAAGATATGA+TGG | - | chr1_2:73379127-73379146 | Msa0091230:CDS | 25.0% |
| ! | AATGGATAAAAGTGATTACT+TGG | - | chr1_2:73379237-73379256 | Msa0091230:CDS | 25.0% |
| ! | ATTTCGTATATAGAAGATGA+TGG | - | chr1_2:73379457-73379476 | Msa0091230:CDS | 25.0% |
| AATCATCATCTGAATTCCTA+TGG | + | chr1_2:73376868-73376887 | None:intergenic | 30.0% | |
| GAATTCAGATGATGATTTGA+GGG | - | chr1_2:73376871-73376890 | Msa0091230:CDS | 30.0% | |
| GAGAAGAATAATAAAGAAGG+TGG | - | chr1_2:73376980-73376999 | Msa0091230:CDS | 30.0% | |
| AAGAATAATAAAGAAGGTGG+TGG | - | chr1_2:73376983-73377002 | Msa0091230:CDS | 30.0% | |
| AGAATAATAAAGAAGGTGGT+GGG | - | chr1_2:73376984-73377003 | Msa0091230:CDS | 30.0% | |
| ATGTGGCTAATGAAAATGTT+GGG | - | chr1_2:73377044-73377063 | Msa0091230:CDS | 30.0% | |
| CAACATACTCAACTACAATT+AGG | + | chr1_2:73377248-73377267 | None:intergenic | 30.0% | |
| ! | TTCAACTTTTAACATGTCCA+TGG | - | chr1_2:73377288-73377307 | Msa0091230:CDS | 30.0% |
| ATTACCATTTACCAACACAT+TGG | - | chr1_2:73377325-73377344 | Msa0091230:CDS | 30.0% | |
| ATTTAGTCATATTCCTGCAT+TGG | - | chr1_2:73377379-73377398 | Msa0091230:CDS | 30.0% | |
| TTTAGTCATATTCCTGCATT+GGG | - | chr1_2:73377380-73377399 | Msa0091230:CDS | 30.0% | |
| ! | AATGTGTCAACATTTTTGCA+TGG | + | chr1_2:73377490-73377509 | None:intergenic | 30.0% |
| GTTGACACATTTATTGATCA+TGG | - | chr1_2:73377499-73377518 | Msa0091230:CDS | 30.0% | |
| TGTCAGATCTCAAATCAATT+GGG | - | chr1_2:73377523-73377542 | Msa0091230:CDS | 30.0% | |
| TAACATGCACTAAATCAACT+CGG | + | chr1_2:73377611-73377630 | None:intergenic | 30.0% | |
| TCTATGCTCTCAAATCAATA+GGG | + | chr1_2:73377754-73377773 | None:intergenic | 30.0% | |
| ATATGAAGGATTCTTCAAGT+TGG | - | chr1_2:73378026-73378045 | Msa0091230:intron | 30.0% | |
| ! | TATGAAGGATTCTTCAAGTT+GGG | - | chr1_2:73378027-73378046 | Msa0091230:intron | 30.0% |
| ! | GATCTATTTGATGATTATGG+AGG | - | chr1_2:73378064-73378083 | Msa0091230:intron | 30.0% |
| ! | ATTTGATGATTATGGAGGAA+TGG | - | chr1_2:73378069-73378088 | Msa0091230:intron | 30.0% |
| GGAAGTCATTTATTAACCTT+AGG | - | chr1_2:73378097-73378116 | Msa0091230:intron | 30.0% | |
| GTCATTTATTAACCTTAGGA+AGG | - | chr1_2:73378101-73378120 | Msa0091230:intron | 30.0% | |
| ATGGGAAAAGAAATTGTTTG+AGG | - | chr1_2:73378132-73378151 | Msa0091230:CDS | 30.0% | |
| AGAACAAAACAACAATGTGT+TGG | - | chr1_2:73378252-73378271 | Msa0091230:CDS | 30.0% | |
| ATATGTCAAGGAACAAAACA+AGG | + | chr1_2:73378297-73378316 | None:intergenic | 30.0% | |
| ATATGAAAGATCTGTATGCT+GGG | - | chr1_2:73378452-73378471 | Msa0091230:intron | 30.0% | |
| ! | ACATGTGAAGTATTTGACTT+CGG | + | chr1_2:73378720-73378739 | None:intergenic | 30.0% |
| ATTGCAAAATTTATCGTACG+GGG | + | chr1_2:73378744-73378763 | None:intergenic | 30.0% | |
| GATTGCAAAATTTATCGTAC+GGG | + | chr1_2:73378745-73378764 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCAATCTCG+TGG | - | chr1_2:73378752-73378771 | Msa0091230:intron | 30.0% |
| TCGAGTAAAATTCAACTTCA+TGG | + | chr1_2:73378898-73378917 | None:intergenic | 30.0% | |
| !! | ACATTGAATGGATTGCAATT+TGG | - | chr1_2:73379331-73379350 | Msa0091230:CDS | 30.0% |
| !! | CATTGAATGGATTGCAATTT+GGG | - | chr1_2:73379332-73379351 | Msa0091230:CDS | 30.0% |
| ! | ATCATTGTACATTTTCTGTG+AGG | + | chr1_2:73379398-73379417 | None:intergenic | 30.0% |
| ! | TTTACCCTTTTGACAGTATG+AGG | - | chr1_2:73376822-73376841 | Msa0091230:CDS | 35.0% |
| GGAATTCAGATGATGATTTG+AGG | - | chr1_2:73376870-73376889 | Msa0091230:CDS | 35.0% | |
| GATGTGGCTAATGAAAATGT+TGG | - | chr1_2:73377043-73377062 | Msa0091230:CDS | 35.0% | |
| TGTGGCTAATGAAAATGTTG+GGG | - | chr1_2:73377045-73377064 | Msa0091230:CDS | 35.0% | |
| !! | TGAAGCTTTGAAAGATATCG+AGG | - | chr1_2:73377120-73377139 | Msa0091230:CDS | 35.0% |
| ATATCGAGGACCATTTCATT+AGG | - | chr1_2:73377134-73377153 | Msa0091230:CDS | 35.0% | |
| TATCGAGGACCATTTCATTA+GGG | - | chr1_2:73377135-73377154 | Msa0091230:CDS | 35.0% | |
| ACTCATAAGCCCTAATGAAA+TGG | + | chr1_2:73377147-73377166 | None:intergenic | 35.0% | |
| ! | AATTCCCCTTCATTCTAGTT+TGG | - | chr1_2:73377204-73377223 | Msa0091230:CDS | 35.0% |
| TTCCTCCAAACTAGAATGAA+GGG | + | chr1_2:73377212-73377231 | None:intergenic | 35.0% | |
| TTTCCTCCAAACTAGAATGA+AGG | + | chr1_2:73377213-73377232 | None:intergenic | 35.0% | |
| ! | TCTAGTTTGGAGGAAATCAA+AGG | - | chr1_2:73377217-73377236 | Msa0091230:CDS | 35.0% |
| ! | TGAACCAATGTGTTGGTAAA+TGG | + | chr1_2:73377332-73377351 | None:intergenic | 35.0% |
| ACTAAGATGAACCAATGTGT+TGG | + | chr1_2:73377339-73377358 | None:intergenic | 35.0% | |
| AGACCTGTAGATAGTTGATT+TGG | - | chr1_2:73377410-73377429 | Msa0091230:CDS | 35.0% | |
| GAACCAAATCAACTATCTAC+AGG | + | chr1_2:73377416-73377435 | None:intergenic | 35.0% | |
| CTGTCAGATCTCAAATCAAT+TGG | - | chr1_2:73377522-73377541 | Msa0091230:CDS | 35.0% | |
| ! | AGCAACTTTAAAAGGTTGTG+TGG | + | chr1_2:73377729-73377748 | None:intergenic | 35.0% |
| ATAGGGTCAGCAACTTTAAA+AGG | + | chr1_2:73377737-73377756 | None:intergenic | 35.0% | |
| GTCTATGCTCTCAAATCAAT+AGG | + | chr1_2:73377755-73377774 | None:intergenic | 35.0% | |
| GCATGACAAAATTGATACTC+TGG | - | chr1_2:73377849-73377868 | Msa0091230:CDS | 35.0% | |
| ! | CTTTCTGCATTGATATCAGA+TGG | + | chr1_2:73377926-73377945 | None:intergenic | 35.0% |
| TCTGGTGGTTCAAAATATGA+AGG | - | chr1_2:73378012-73378031 | Msa0091230:intron | 35.0% | |
| ! | TGATTATGGAGGAATGGATT+CGG | - | chr1_2:73378075-73378094 | Msa0091230:intron | 35.0% |
| CTTAGGAAGGTTATATGCAT+GGG | - | chr1_2:73378114-73378133 | Msa0091230:CDS | 35.0% | |
| GGAAAAGAAATTGTTTGAGG+AGG | - | chr1_2:73378135-73378154 | Msa0091230:CDS | 35.0% | |
| GAAATTGTTTGAGGAGGTTA+AGG | - | chr1_2:73378141-73378160 | Msa0091230:CDS | 35.0% | |
| AGGAGATGATGAATTAAGCA+TGG | - | chr1_2:73378414-73378433 | Msa0091230:intron | 35.0% | |
| GATATGAAAGATCTGTATGC+TGG | - | chr1_2:73378451-73378470 | Msa0091230:intron | 35.0% | |
| GTTAAGCTGCATTTGGAAAA+TGG | + | chr1_2:73378644-73378663 | None:intergenic | 35.0% | |
| ACAATCGTGGAAAATCATGT+TGG | - | chr1_2:73378664-73378683 | Msa0091230:intron | 35.0% | |
| TTGCAAAATTTATCGTACGG+GGG | + | chr1_2:73378743-73378762 | None:intergenic | 35.0% | |
| ! | CAATGCCATTTCAAGTCAAT+GGG | - | chr1_2:73378939-73378958 | Msa0091230:intron | 35.0% |
| TTGCATATTACGAGTAATGG+CGG | + | chr1_2:73378965-73378984 | None:intergenic | 35.0% | |
| TCGTTGCATATTACGAGTAA+TGG | + | chr1_2:73378968-73378987 | None:intergenic | 35.0% | |
| TACTCGTAATATGCAACGAT+TGG | - | chr1_2:73378969-73378988 | Msa0091230:intron | 35.0% | |
| TGAAAGATGTGAAAGCTCTT+TGG | - | chr1_2:73379050-73379069 | Msa0091230:CDS | 35.0% | |
| TCATAGATCAGAAGAAGAGT+CGG | - | chr1_2:73379195-73379214 | Msa0091230:CDS | 35.0% | |
| TCGTGAAGAAGAATGCTTAA+TGG | - | chr1_2:73379219-73379238 | Msa0091230:CDS | 35.0% | |
| AGTGAAAATAGTGAGAAAGC+TGG | - | chr1_2:73379430-73379449 | Msa0091230:CDS | 35.0% | |
| GTGAAAATAGTGAGAAAGCT+GGG | - | chr1_2:73379431-73379450 | Msa0091230:CDS | 35.0% | |
| GAAAACTGCAACAGCAAAAA+TGG | - | chr1_2:73379490-73379509 | Msa0091230:CDS | 35.0% | |
| GGCATAGACATATGATGCAT+AGG | + | chr1_2:73376755-73376774 | None:intergenic | 40.0% | |
| !!! | ACCACAGAGAGATTTTGGTT+GGG | - | chr1_2:73376793-73376812 | Msa0091230:CDS | 40.0% |
| AGGTTATGAATGGCTACCAT+AGG | - | chr1_2:73376849-73376868 | Msa0091230:CDS | 40.0% | |
| AAGGGTAGAACTTGAGCATA+AGG | - | chr1_2:73376940-73376959 | Msa0091230:CDS | 40.0% | |
| ! | AGTTGTGAGTGGTGTTGAAA+CGG | - | chr1_2:73377009-73377028 | Msa0091230:CDS | 40.0% |
| GTGGCTAATGAAAATGTTGG+GGG | - | chr1_2:73377046-73377065 | Msa0091230:CDS | 40.0% | |
| TGGCTAATGAAAATGTTGGG+GGG | - | chr1_2:73377047-73377066 | Msa0091230:CDS | 40.0% | |
| TTCTTGATACACCTGCAGAA+GGG | - | chr1_2:73377086-73377105 | Msa0091230:CDS | 40.0% | |
| TTCATTAGGGCTTATGAGTC+TGG | - | chr1_2:73377148-73377167 | Msa0091230:CDS | 40.0% | |
| ! | TCTATTAGCCTCAAGCATCT+TGG | + | chr1_2:73377185-73377204 | None:intergenic | 40.0% |
| TCCTCCAAACTAGAATGAAG+GGG | + | chr1_2:73377211-73377230 | None:intergenic | 40.0% | |
| GCTGACAAATCTCCAATTGA+TGG | - | chr1_2:73377585-73377604 | Msa0091230:CDS | 40.0% | |
| AAATCAACTCGGCCATCAAT+TGG | + | chr1_2:73377600-73377619 | None:intergenic | 40.0% | |
| TGAATAAGGAACCCTGATGT+AGG | - | chr1_2:73377653-73377672 | Msa0091230:intron | 40.0% | |
| GTTGCAACTTTGCCAGATTA+AGG | - | chr1_2:73377777-73377796 | Msa0091230:CDS | 40.0% | |
| TGATGATTGCCTAGATGACA+TGG | + | chr1_2:73377984-73378003 | None:intergenic | 40.0% | |
| ! | GATTATGGAGGAATGGATTC+GGG | - | chr1_2:73378076-73378095 | Msa0091230:intron | 40.0% |
| CCATGCATATAACCTTCCTA+AGG | + | chr1_2:73378116-73378135 | None:intergenic | 40.0% | |
| CCTTAGGAAGGTTATATGCA+TGG | - | chr1_2:73378113-73378132 | Msa0091230:CDS | 40.0% | |
| TGTTTGAGGAGGTTAAGGTA+AGG | - | chr1_2:73378146-73378165 | Msa0091230:CDS | 40.0% | |
| ! | TTGGTGCTTAACTTCTAGTG+TGG | - | chr1_2:73378271-73378290 | Msa0091230:CDS | 40.0% |
| TTCAGTGAATTCCTTGCCTT+AGG | - | chr1_2:73378327-73378346 | Msa0091230:intron | 40.0% | |
| CGATTGTGTTAAGCTGCATT+TGG | + | chr1_2:73378651-73378670 | None:intergenic | 40.0% | |
| AATGCAGCTTAACACAATCG+TGG | - | chr1_2:73378651-73378670 | Msa0091230:intron | 40.0% | |
| TTGCAATCAATCTCGTGGAT+TGG | - | chr1_2:73378757-73378776 | Msa0091230:intron | 40.0% | |
| !! | TACGTATGCTTTTTGAGCTG+CGG | + | chr1_2:73378840-73378859 | None:intergenic | 40.0% |
| !! | CCATTGACTTGAAATGGCAT+TGG | + | chr1_2:73378941-73378960 | None:intergenic | 40.0% |
| ! | CCAATGCCATTTCAAGTCAA+TGG | - | chr1_2:73378938-73378957 | Msa0091230:intron | 40.0% |
| CTTATCAGGCAACTTTCGTA+AGG | + | chr1_2:73379002-73379021 | None:intergenic | 40.0% | |
| ACGAAAGTTGCCTGATAAGA+CGG | - | chr1_2:73379003-73379022 | Msa0091230:intron | 40.0% | |
| ATAAAGAGCAGCAACAGAAG+AGG | - | chr1_2:73379083-73379102 | Msa0091230:CDS | 40.0% | |
| GAGAAAACTTGAGGTAGAGA+AGG | - | chr1_2:73379270-73379289 | Msa0091230:CDS | 40.0% | |
| ACACAGAGGATGACATTGAA+TGG | - | chr1_2:73379319-73379338 | Msa0091230:CDS | 40.0% | |
| ! | GTACATTTTCTGTGAGGCTT+TGG | + | chr1_2:73379392-73379411 | None:intergenic | 40.0% |
| ! | AGAAGATGATGGTTGCAATG+TGG | - | chr1_2:73379468-73379487 | Msa0091230:CDS | 40.0% |
| CCAAAATCTCTCTGTGGTGA+AGG | + | chr1_2:73376791-73376810 | None:intergenic | 45.0% | |
| ! | CCTTCACCACAGAGAGATTT+TGG | - | chr1_2:73376788-73376807 | Msa0091230:CDS | 45.0% |
| !! | CACCACAGAGAGATTTTGGT+TGG | - | chr1_2:73376792-73376811 | Msa0091230:CDS | 45.0% |
| TCCCAACCAAAATCTCTCTG+TGG | + | chr1_2:73376797-73376816 | None:intergenic | 45.0% | |
| CTGGCCTCATACTGTCAAAA+GGG | + | chr1_2:73376829-73376848 | None:intergenic | 45.0% | |
| TCTGGCCTCATACTGTCAAA+AGG | + | chr1_2:73376830-73376849 | None:intergenic | 45.0% | |
| ! | TTTTGACAGTATGAGGCCAG+AGG | - | chr1_2:73376829-73376848 | Msa0091230:CDS | 45.0% |
| ATGAGGCCAGAGGTTATGAA+TGG | - | chr1_2:73376839-73376858 | Msa0091230:CDS | 45.0% | |
| TGGTAGCCATTCATAACCTC+TGG | + | chr1_2:73376848-73376867 | None:intergenic | 45.0% | |
| ATGATGATTTGAGGGCAGTG+AGG | - | chr1_2:73376879-73376898 | Msa0091230:CDS | 45.0% | |
| TGATGATTTGAGGGCAGTGA+GGG | - | chr1_2:73376880-73376899 | Msa0091230:CDS | 45.0% | |
| AGAAGGGATTCCAGAGTTAG+AGG | - | chr1_2:73376907-73376926 | Msa0091230:CDS | 45.0% | |
| AGTTAGAGGAGGAAGTGGAA+AGG | - | chr1_2:73376921-73376940 | Msa0091230:CDS | 45.0% | |
| GTTAGAGGAGGAAGTGGAAA+GGG | - | chr1_2:73376922-73376941 | Msa0091230:CDS | 45.0% | |
| GGTAGAACTTGAGCATAAGG+TGG | - | chr1_2:73376943-73376962 | Msa0091230:CDS | 45.0% | |
| AGAACTTGAGCATAAGGTGG+TGG | - | chr1_2:73376946-73376965 | Msa0091230:CDS | 45.0% | |
| TGAAAATGTTGGGGGGCAAA+AGG | - | chr1_2:73377054-73377073 | Msa0091230:CDS | 45.0% | |
| GAAAATGTTGGGGGGCAAAA+GGG | - | chr1_2:73377055-73377074 | Msa0091230:CDS | 45.0% | |
| AAAATGTTGGGGGGCAAAAG+GGG | - | chr1_2:73377056-73377075 | Msa0091230:CDS | 45.0% | |
| GTTCTTGATACACCTGCAGA+AGG | - | chr1_2:73377085-73377104 | Msa0091230:CDS | 45.0% | |
| TAGGGCTTATGAGTCTGGTA+AGG | - | chr1_2:73377153-73377172 | Msa0091230:CDS | 45.0% | |
| AGGGCTTATGAGTCTGGTAA+GGG | - | chr1_2:73377154-73377173 | Msa0091230:CDS | 45.0% | |
| !! | TCCCCTTCATTCTAGTTTGG+AGG | - | chr1_2:73377207-73377226 | Msa0091230:CDS | 45.0% |
| ACCCTGATGTAGGAATGTGA+TGG | - | chr1_2:73377663-73377682 | Msa0091230:intron | 45.0% | |
| GCCATCACATTCCTACATCA+GGG | + | chr1_2:73377667-73377686 | None:intergenic | 45.0% | |
| AGCCATCACATTCCTACATC+AGG | + | chr1_2:73377668-73377687 | None:intergenic | 45.0% | |
| GATGTAGGAATGTGATGGCT+AGG | - | chr1_2:73377668-73377687 | Msa0091230:intron | 45.0% | |
| GAGCATGCACTTGAATAGAC+AGG | - | chr1_2:73377827-73377846 | Msa0091230:CDS | 45.0% | |
| CATGGAAGTCCATGTCATCT+AGG | - | chr1_2:73377972-73377991 | Msa0091230:intron | 45.0% | |
| GCAATCATCATGCAAGAGTC+TGG | - | chr1_2:73377994-73378013 | Msa0091230:intron | 45.0% | |
| ATCATCATGCAAGAGTCTGG+TGG | - | chr1_2:73377997-73378016 | Msa0091230:intron | 45.0% | |
| !! | GAAGGATTCTTCAAGTTGGG+TGG | - | chr1_2:73378030-73378049 | Msa0091230:intron | 45.0% |
| AGATCTGTATGCTGGGATCT+TGG | - | chr1_2:73378459-73378478 | Msa0091230:intron | 45.0% | |
| TTGAAGCCGAGCTTCATCAT+TGG | - | chr1_2:73378792-73378811 | Msa0091230:intron | 45.0% | |
| !! | GACTTGAAATGGCATTGGCA+TGG | + | chr1_2:73378936-73378955 | None:intergenic | 45.0% |
| GTGAGTGTTACCGTCTTATC+AGG | + | chr1_2:73379016-73379035 | None:intergenic | 45.0% | |
| GTGATTACTTGGAGACACTG+AGG | - | chr1_2:73379248-73379267 | Msa0091230:CDS | 45.0% | |
| GACACTGAGGAGAAAACTTG+AGG | - | chr1_2:73379261-73379280 | Msa0091230:CDS | 45.0% | |
| GTTGCATGCAAGAAACACAG+AGG | - | chr1_2:73379305-73379324 | Msa0091230:CDS | 45.0% | |
| !! | TGTGGTGAAGGCATTGAAGG+TGG | + | chr1_2:73376779-73376798 | None:intergenic | 50.0% |
| !! | CTCTGTGGTGAAGGCATTGA+AGG | + | chr1_2:73376782-73376801 | None:intergenic | 50.0% |
| AGGGATTCCAGAGTTAGAGG+AGG | - | chr1_2:73376910-73376929 | Msa0091230:CDS | 50.0% | |
| TCCAGAGTTAGAGGAGGAAG+TGG | - | chr1_2:73376916-73376935 | Msa0091230:CDS | 50.0% | |
| TCCACTTCCTCCTCTAACTC+TGG | + | chr1_2:73376920-73376939 | None:intergenic | 50.0% | |
| GGTCTTAAGAAGCCCAATGC+AGG | + | chr1_2:73377395-73377414 | None:intergenic | 50.0% | |
| GTGAATTCCTTGCCTTAGGC+TGG | - | chr1_2:73378331-73378350 | Msa0091230:intron | 50.0% | |
| GCATACGTAGAAGCTCTGCA+TGG | - | chr1_2:73378851-73378870 | Msa0091230:intron | 50.0% | |
| ACGTAGAAGCTCTGCATGGA+TGG | - | chr1_2:73378855-73378874 | Msa0091230:intron | 50.0% | |
| !! | GGTGAAGGCATTGAAGGTGG+TGG | + | chr1_2:73376776-73376795 | None:intergenic | 55.0% |
| TGATTTGAGGGCAGTGAGGG+AGG | - | chr1_2:73376883-73376902 | Msa0091230:CDS | 55.0% | |
| !! | GGTGGTGGGAAAGTTGTGAG+TGG | - | chr1_2:73376998-73377017 | Msa0091230:CDS | 55.0% |
| ! | GAGTGGTGTTGAAACGGCGA+AGG | - | chr1_2:73377015-73377034 | Msa0091230:CDS | 55.0% |
| TGTTGAAACGGCGAAGGCTG+TGG | - | chr1_2:73377021-73377040 | Msa0091230:CDS | 55.0% | |
| AGCAACTCTCTCCCTTCTGC+AGG | + | chr1_2:73377100-73377119 | None:intergenic | 55.0% | |
| GGGTGTGACCAAGATGCTTG+AGG | - | chr1_2:73377174-73377193 | Msa0091230:CDS | 55.0% | |
| GCTATCTCCAGCCTAAGGCA+AGG | + | chr1_2:73378341-73378360 | None:intergenic | 55.0% | |
| CTTAGGCTGGAGATAGCACG+CGG | - | chr1_2:73378344-73378363 | Msa0091230:intron | 55.0% | |
| CGCACGCCAATGATGAAGCT+CGG | + | chr1_2:73378801-73378820 | None:intergenic | 55.0% | |
| !! | GGCGGCCCATTGACTTGAAA+TGG | + | chr1_2:73378947-73378966 | None:intergenic | 55.0% |
| AGGGCAGTGAGGGAGGAAGA+AGG | - | chr1_2:73376890-73376909 | Msa0091230:CDS | 60.0% | |
| GGGCAGTGAGGGAGGAAGAA+GGG | - | chr1_2:73376891-73376910 | Msa0091230:CDS | 60.0% | |
| AACGGCGAAGGCTGTGGATG+TGG | - | chr1_2:73377027-73377046 | Msa0091230:CDS | 60.0% | |
| CGCGTGCTATCTCCAGCCTA+AGG | + | chr1_2:73378346-73378365 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 73376749 | 73379519 | 73376749 | ID=Msa0091230;Name=Msa0091230 |
| chr1_2 | mRNA | 73376749 | 73379519 | 73376749 | ID=Msa0091230-mRNA-1;Parent=Msa0091230;Name=Msa0091230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.25|1|1|1|4|0|598 |
| chr1_2 | exon | 73379030 | 73379519 | 73379030 | ID=Msa0091230-mRNA-1:exon:25610;Parent=Msa0091230-mRNA-1 |
| chr1_2 | exon | 73378106 | 73378326 | 73378106 | ID=Msa0091230-mRNA-1:exon:25609;Parent=Msa0091230-mRNA-1 |
| chr1_2 | exon | 73377696 | 73377919 | 73377696 | ID=Msa0091230-mRNA-1:exon:25608;Parent=Msa0091230-mRNA-1 |
| chr1_2 | exon | 73376749 | 73377610 | 73376749 | ID=Msa0091230-mRNA-1:exon:25607;Parent=Msa0091230-mRNA-1 |
| chr1_2 | CDS | 73379030 | 73379519 | 73379030 | ID=Msa0091230-mRNA-1:cds;Parent=Msa0091230-mRNA-1 |
| chr1_2 | CDS | 73378106 | 73378326 | 73378106 | ID=Msa0091230-mRNA-1:cds;Parent=Msa0091230-mRNA-1 |
| chr1_2 | CDS | 73377696 | 73377919 | 73377696 | ID=Msa0091230-mRNA-1:cds;Parent=Msa0091230-mRNA-1 |
| chr1_2 | CDS | 73376749 | 73377610 | 73376749 | ID=Msa0091230-mRNA-1:cds;Parent=Msa0091230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
