AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0966710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966710 MtrunA17_Chr6g0487261 99.020 306 3 0 1 306 1 306 0.0 630
Msa0966710 MtrunA17_Chr8g0389741 84.039 307 48 1 1 306 1 307 0.0 534
Msa0966710 MtrunA17_Chr3g0144531 44.366 284 157 1 25 307 26 309 6.08e-83 257
Msa0966710 MtrunA17_Chr4g0034901 41.914 303 173 2 7 307 9 310 2.98e-82 256
Msa0966710 MtrunA17_Chr4g0043851 46.043 278 148 2 28 304 33 309 2.07e-79 246
Msa0966710 MtrunA17_Chr4g0003281 39.735 302 180 2 5 304 17 318 1.73e-78 244
Msa0966710 MtrunA17_Chr1g0155001 42.254 284 162 2 26 307 23 306 9.85e-78 243
Msa0966710 MtrunA17_Chr3g0110371 42.403 283 160 1 26 305 23 305 1.01e-77 245
Msa0966710 MtrunA17_Chr4g0075031 42.958 284 159 1 24 304 42 325 3.29e-77 244
Msa0966710 MtrunA17_Chr1g0189111 44.444 279 152 3 27 304 31 307 3.45e-77 241
Msa0966710 MtrunA17_Chr1g0177171 43.369 279 157 1 27 304 38 316 4.90e-77 243
Msa0966710 MtrunA17_Chr2g0321511 40.397 302 175 3 5 304 6 304 8.30e-77 239
Msa0966710 MtrunA17_Chr4g0026321 42.807 285 155 3 24 304 26 306 9.70e-77 239
Msa0966710 MtrunA17_Chr3g0119541 41.135 282 165 1 24 304 23 304 4.37e-76 237
Msa0966710 MtrunA17_Chr3g0121271 37.874 301 179 2 7 304 11 306 4.98e-76 241
Msa0966710 MtrunA17_Chr8g0378621 39.000 300 177 2 11 304 7 306 2.48e-75 239
Msa0966710 MtrunA17_Chr5g0434591 41.060 302 173 2 7 305 5 304 5.40e-75 238
Msa0966710 MtrunA17_Chr1g0161011 42.049 283 161 1 25 304 22 304 3.56e-74 236
Msa0966710 MtrunA17_Chr5g0439251 41.935 279 161 1 27 304 25 303 5.05e-74 235
Msa0966710 MtrunA17_Chr7g0234821 42.756 283 156 5 28 305 27 308 1.09e-73 234
Msa0966710 MtrunA17_Chr1g0146831 40.391 307 173 6 6 307 8 309 2.56e-73 230
Msa0966710 MtrunA17_Chr2g0285901 40.667 300 175 3 6 304 3 300 7.31e-71 224
Msa0966710 MtrunA17_Chr4g0064021 40.647 278 164 1 28 304 27 304 8.89e-71 224
Msa0966710 MtrunA17_Chr8g0339191 41.343 283 160 5 28 305 30 311 2.25e-68 220
Msa0966710 MtrunA17_Chr2g0294601 37.589 282 164 5 27 304 59 332 1.36e-64 208
Msa0966710 MtrunA17_Chr7g0223961 41.343 283 156 8 27 306 23 298 4.11e-64 208
Msa0966710 MtrunA17_Chr2g0294591 37.589 282 166 5 27 305 30 304 8.85e-64 205
Msa0966710 MtrunA17_Chr4g0046311 35.948 306 188 4 7 305 3 307 1.24e-61 202
Msa0966710 MtrunA17_Chr4g0039071 36.525 282 171 4 27 307 25 299 7.49e-61 198
Msa0966710 MtrunA17_Chr4g0038981 34.551 301 185 5 5 305 1 289 4.04e-60 194
Msa0966710 MtrunA17_Chr4g0038941 37.050 278 162 6 27 304 52 316 1.56e-59 194
Msa0966710 MtrunA17_Chr4g0039021 35.632 261 160 2 47 307 1 253 8.94e-59 190
Msa0966710 MtrunA17_Chr4g0039011 35.231 281 170 5 25 305 40 308 1.90e-58 191
Msa0966710 MtrunA17_Chr7g0250301 33.452 281 180 4 27 307 8 281 1.96e-58 190
Msa0966710 MtrunA17_Chr4g0038961 32.890 301 190 5 5 305 1 289 1.15e-56 186
Msa0966710 MtrunA17_Chr4g0038971 33.223 301 189 5 5 305 1 289 2.39e-56 185
Msa0966710 MtrunA17_Chr1g0174261 37.945 253 149 4 56 307 1 246 1.50e-55 183
Msa0966710 MtrunA17_Chr4g0043511 37.676 284 171 6 27 307 62 342 2.06e-54 185
Msa0966710 MtrunA17_Chr7g0250321 33.083 266 171 4 27 292 28 286 1.94e-53 176
Msa0966710 MtrunA17_Chr8g0383311 32.753 287 177 7 27 305 43 321 4.00e-46 162
Msa0966710 MtrunA17_Chr5g0436361 35.985 264 159 8 43 301 53 311 1.05e-44 156
Msa0966710 MtrunA17_Chr7g0253091 29.524 315 202 9 1 305 1 305 5.29e-40 145
Msa0966710 MtrunA17_Chr1g0148391 30.282 284 188 6 27 305 26 304 1.77e-39 144
Msa0966710 MtrunA17_Chr3g0138741 30.693 303 195 8 7 304 16 308 2.33e-39 144
Msa0966710 MtrunA17_Chr6g0461601 30.556 288 185 7 27 305 26 307 2.56e-38 141
Msa0966710 MtrunA17_Chr4g0062771 29.085 306 201 9 8 305 14 311 8.72e-38 140
Msa0966710 MtrunA17_Chr2g0290821 29.474 285 191 6 25 304 26 305 1.53e-37 139
Msa0966710 MtrunA17_Chr4g0076581 30.333 300 194 7 14 304 15 308 1.29e-36 137
Msa0966710 MtrunA17_Chr3g0129341 28.939 311 200 11 5 305 11 310 7.69e-35 132
Msa0966710 MtrunA17_Chr2g0306311 25.000 332 213 6 6 305 9 336 1.48e-34 131
Msa0966710 MtrunA17_Chr3g0105981 29.553 291 178 9 27 304 27 303 4.54e-33 126
Msa0966710 MtrunA17_Chr4g0069801 29.412 272 178 9 40 304 41 305 7.04e-33 126
Msa0966710 MtrunA17_Chr2g0294581 34.667 150 89 2 27 174 76 218 1.62e-25 103
Msa0966710 MtrunA17_Chr5g0401301 29.801 151 98 3 50 198 22 166 5.59e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966710 AT5G56590.1 75.172 290 70 2 20 307 19 308 1.91e-164 467
Msa0966710 AT4G29360.2 72.664 289 79 0 18 306 28 316 6.09e-152 437
Msa0966710 AT4G29360.1 68.627 306 96 0 1 306 1 306 1.22e-151 436
Msa0966710 AT5G42720.1 43.564 303 164 3 11 306 5 307 4.64e-85 263
Msa0966710 AT2G01630.2 45.455 286 153 1 25 307 21 306 2.89e-83 256
Msa0966710 AT2G01630.3 45.455 286 153 1 25 307 21 306 9.24e-83 256
Msa0966710 AT1G30080.2 43.533 317 168 3 1 307 1 316 7.01e-82 253
Msa0966710 AT2G01630.1 45.455 286 153 1 25 307 21 306 7.75e-82 256
Msa0966710 AT1G30080.1 43.533 317 168 3 1 307 1 316 1.29e-81 253
Msa0966710 AT2G27500.1 43.772 281 157 1 24 303 26 306 5.45e-80 248
Msa0966710 AT2G27500.2 43.772 281 157 1 24 303 26 306 7.21e-80 247
Msa0966710 AT1G66250.1 44.561 285 155 1 24 305 29 313 7.57e-79 248
Msa0966710 AT4G18340.2 44.964 278 151 2 27 303 34 310 8.04e-79 244
Msa0966710 AT4G18340.1 44.964 278 151 2 27 303 34 310 1.17e-78 245
Msa0966710 AT1G32860.1 43.416 281 155 3 27 304 29 308 2.42e-78 245
Msa0966710 AT2G26600.1 42.807 285 159 2 24 304 28 312 8.22e-78 242
Msa0966710 AT2G16230.1 42.254 284 163 1 25 307 23 306 1.17e-77 245
Msa0966710 AT3G13560.4 41.034 290 168 1 18 304 17 306 3.12e-77 244
Msa0966710 AT3G13560.1 41.034 290 168 1 18 304 17 306 3.12e-77 244
Msa0966710 AT3G13560.2 41.034 290 168 1 18 304 17 306 3.12e-77 244
Msa0966710 AT3G13560.5 41.034 290 168 1 18 304 17 306 3.12e-77 244
Msa0966710 AT3G13560.3 41.034 290 168 1 18 304 17 306 3.12e-77 244
Msa0966710 AT5G55180.2 41.637 281 163 1 25 304 25 305 1.89e-76 241
Msa0966710 AT5G55180.1 41.637 281 163 1 25 304 25 305 2.22e-76 241
Msa0966710 AT1G11820.1 42.553 282 159 1 26 304 43 324 3.25e-76 238
Msa0966710 AT4G26830.1 42.254 284 162 2 22 304 20 302 1.62e-75 238
Msa0966710 AT4G26830.2 42.705 281 159 2 25 304 27 306 2.06e-75 238
Msa0966710 AT1G11820.3 42.553 282 159 1 26 304 43 324 2.07e-75 239
Msa0966710 AT4G34480.2 42.908 282 160 1 26 306 25 306 2.86e-75 235
Msa0966710 AT1G11820.2 42.553 282 159 1 26 304 43 324 4.81e-75 239
Msa0966710 AT3G15800.1 41.935 279 160 2 28 304 44 322 2.07e-73 231
Msa0966710 AT4G34480.1 42.908 282 160 1 26 306 25 306 2.80e-73 234
Msa0966710 AT3G61810.1 44.161 274 146 3 27 294 55 327 6.35e-73 229
Msa0966710 AT2G05790.1 40.143 279 166 1 27 304 25 303 6.90e-72 229
Msa0966710 AT4G16260.1 39.404 302 174 5 6 306 3 296 7.92e-72 226
Msa0966710 AT5G24318.4 37.624 303 180 6 8 307 12 308 7.27e-69 219
Msa0966710 AT5G24318.2 37.624 303 180 6 8 307 12 308 1.18e-67 218
Msa0966710 AT5G24318.1 37.624 303 180 6 8 307 12 308 1.52e-67 218
Msa0966710 AT5G42100.2 39.789 284 166 4 25 304 25 307 1.20e-66 214
Msa0966710 AT5G42100.1 39.789 284 166 4 25 304 25 307 1.25e-66 214
Msa0966710 AT3G07320.1 39.437 284 166 5 28 306 26 308 5.35e-66 214
Msa0966710 AT4G16260.2 40.293 273 154 5 35 306 3 267 5.26e-65 207
Msa0966710 AT3G57270.1 38.028 284 167 5 24 306 24 299 6.59e-65 207
Msa0966710 AT2G27500.3 44.298 228 126 1 77 303 1 228 8.76e-65 206
Msa0966710 AT4G14080.1 37.895 285 172 4 25 305 40 323 4.24e-63 207
Msa0966710 AT3G23770.1 38.542 288 169 4 25 305 35 321 1.56e-62 205
Msa0966710 AT3G57260.1 35.216 301 177 6 14 307 12 301 7.79e-62 199
Msa0966710 AT3G57260.2 35.216 301 177 6 14 307 28 317 1.26e-61 199
Msa0966710 AT3G57240.1 36.207 290 171 8 18 307 27 302 1.76e-58 191
Msa0966710 AT5G20390.1 37.276 279 167 5 27 304 33 304 7.52e-58 189
Msa0966710 AT3G46570.1 38.127 299 173 8 14 306 14 306 2.00e-57 189
Msa0966710 AT2G26600.2 42.130 216 121 2 93 304 3 218 1.65e-56 184
Msa0966710 AT5G20340.1 35.461 282 174 5 27 307 43 317 2.77e-54 181
Msa0966710 AT1G77780.1 37.143 280 169 5 25 304 22 294 4.07e-54 180
Msa0966710 AT1G33220.1 34.767 279 174 5 27 304 34 305 2.23e-53 177
Msa0966710 AT5G20330.1 35.461 282 174 5 27 307 34 308 9.34e-53 176
Msa0966710 AT1G77790.1 32.517 286 187 4 5 290 8 287 2.62e-48 165
Msa0966710 AT3G55430.1 34.722 288 172 12 25 306 27 304 1.81e-47 165
Msa0966710 AT4G34480.3 45.078 193 105 1 115 306 3 195 2.89e-46 160
Msa0966710 AT2G39640.1 33.775 302 186 8 7 306 12 301 5.48e-44 158
Msa0966710 AT5G58090.1 30.345 290 192 6 21 305 16 300 5.69e-42 151
Msa0966710 AT3G55780.1 33.582 268 171 6 41 303 49 314 6.72e-42 149
Msa0966710 AT5G18220.1 32.180 289 178 8 25 305 28 306 4.72e-41 149
Msa0966710 AT3G04010.1 31.270 307 191 9 8 305 16 311 1.34e-40 147
Msa0966710 AT5G20560.1 31.317 281 186 5 25 304 32 306 2.22e-40 144
Msa0966710 AT5G24318.3 41.040 173 97 2 136 307 1 169 4.83e-40 142
Msa0966710 AT4G31140.1 28.105 306 204 7 5 305 11 305 1.17e-36 137
Msa0966710 AT4G17180.1 31.210 314 189 10 1 305 1 296 4.28e-36 135
Msa0966710 AT3G24330.1 27.922 308 206 9 5 305 20 318 3.63e-35 133
Msa0966710 AT5G64790.1 28.481 316 207 9 1 306 1 307 5.22e-34 130
Msa0966710 AT5G20870.1 30.070 286 181 8 31 303 34 313 9.40e-34 129
Msa0966710 AT1G64760.1 28.571 308 194 10 7 304 11 302 1.31e-33 129
Msa0966710 AT1G64760.2 28.571 308 194 10 7 304 11 302 1.31e-33 129
Msa0966710 AT2G19440.2 29.861 288 182 8 27 304 21 298 2.21e-33 128
Msa0966710 AT2G19440.1 29.861 288 182 8 27 304 21 298 2.21e-33 128
Msa0966710 AT5G58480.1 28.169 284 193 6 27 304 26 304 1.62e-31 123

Find 121 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACAAAATGCGATAAAT+TGG 0.140800 6_3:+95416923 Msa0966710:three_prime_UTR
AAAATGTTCATCCTGCTATT+TGG 0.231522 6_3:-95417935 None:intergenic
TCTGATGTTGCCTGTAGTTT+TGG 0.236535 6_3:+95417072 Msa0966710:three_prime_UTR
TAGCTCTTCCCCGGCTTTGC+AGG 0.246807 6_3:-95416686 None:intergenic
AACTGTATCTACATGAAAAC+TGG 0.249648 6_3:+95417417 Msa0966710:three_prime_UTR
AATTGGGCTTGTGGTACTTC+TGG 0.267372 6_3:+95416940 Msa0966710:three_prime_UTR
TTTCATTGTTCAATGAAAAT+AGG 0.269193 6_3:+95416722 Msa0966710:three_prime_UTR
CTCTCCAACCAAAGTGTCTT+TGG 0.273000 6_3:+95416409 Msa0966710:CDS
GTCCGATATCCAAAAGAAAA+AGG 0.308137 6_3:-95417682 None:intergenic
GTCTCGATCGTTCCCTCCTT+CGG 0.317267 6_3:+95416274 Msa0966710:CDS
TTATATGTTTGTGCATTATC+AGG 0.317579 6_3:-95416623 None:intergenic
TGTTCTTGTTCTTGCTTGCT+TGG 0.317901 6_3:-95414383 None:intergenic
AATAGCTATTACCAGCAAAA+TGG 0.320368 6_3:+95417045 Msa0966710:three_prime_UTR
GGATACAGATCGATCATAAA+AGG 0.324449 6_3:-95416368 None:intergenic
TGTCATCGATCAAACTTGTT+AGG 0.331612 6_3:-95417708 None:intergenic
TATTATTACTTGCCAAAGTT+TGG 0.347462 6_3:-95417568 None:intergenic
GTTGAGGTGTATGCTGCTTT+TGG 0.351356 6_3:+95417782 Msa0966710:three_prime_UTR
GCCAAGTGTCTGCATTAGTT+TGG 0.355290 6_3:-95416058 None:intergenic
CAAGCTTTCGATTGTTGAAA+AGG 0.360788 6_3:+95417736 Msa0966710:three_prime_UTR
ACCAACTGTGACACCTTATC+AGG 0.370353 6_3:-95415906 None:intergenic
CTAGGCTGTACACGTTTGTT+AGG 0.371470 6_3:-95416792 None:intergenic
AACGGAAGCAAATCTAGATT+TGG 0.372532 6_3:-95416026 None:intergenic
CAACTTCAAATGGAACAAAA+TGG 0.373327 6_3:+95416869 Msa0966710:three_prime_UTR
GTATAAAGCAAACCAGTGTT+AGG 0.380170 6_3:-95416470 None:intergenic
CTTACAAAATGCGATAAATT+GGG 0.385650 6_3:+95416924 Msa0966710:three_prime_UTR
GTTTGGAATCTGAAAGGAAC+TGG 0.397266 6_3:+95416752 Msa0966710:three_prime_UTR
TGAAAATAGGAAGCCAGGTT+TGG 0.399211 6_3:+95416735 Msa0966710:three_prime_UTR
GAAATTCCAGCAGTGGCTTA+AGG 0.400304 6_3:-95416328 None:intergenic
CATGTAGATACAGTTGTCAT+AGG 0.405879 6_3:-95417409 None:intergenic
GCTACTAGTTCAACTTCAAA+TGG 0.417514 6_3:+95416859 Msa0966710:three_prime_UTR
GCATCTGCGGTCATGTCAAC+AGG 0.422571 6_3:-95416832 None:intergenic
GGAGTAGCAGCTGTCTCCTT+AGG 0.430476 6_3:-95416602 None:intergenic
TTCGGGACTTTCTGTAACTT+CGG 0.431562 6_3:-95416141 None:intergenic
TTCAATGAAAATAGGAAGCC+AGG 0.435657 6_3:+95416730 Msa0966710:three_prime_UTR
GATAACATGTCTTATCAGAT+TGG 0.437839 6_3:-95416648 None:intergenic
TTCCTTTCAGATTCCAAACC+TGG 0.438368 6_3:-95416748 None:intergenic
GACTGGTGTACTTGTTGATA+AGG 0.445488 6_3:+95417098 Msa0966710:three_prime_UTR
GTTTCCAGTACTCATTCCCT+TGG 0.453975 6_3:+95416245 Msa0966710:CDS
AACCGGTACACCTGCAAAGC+CGG 0.457908 6_3:+95416676 Msa0966710:CDS
CTGTACACGTTTGTTAGGTC+CGG 0.458800 6_3:-95416787 None:intergenic
CGATCGTTCCCTCCTTCGGC+TGG 0.460974 6_3:+95416278 Msa0966710:CDS
ACCGGTACACCTGCAAAGCC+GGG 0.471573 6_3:+95416677 Msa0966710:CDS
GTGCAGAACTAACCAAACTT+TGG 0.474451 6_3:+95417556 Msa0966710:intron
AAAGTCATGGTAACCGAGAC+AGG 0.476137 6_3:+95416560 Msa0966710:CDS
AACTCCAAGGGAATGAGTAC+TGG 0.477506 6_3:-95416249 None:intergenic
GACAGTTATGTATGTGATCT+TGG 0.481677 6_3:-95416114 None:intergenic
TTATTTCCAGATTGTTGCTA+CGG 0.485694 6_3:+95415834 Msa0966710:intron
ACCGGCGTCGAACTTATGAT+TGG 0.486069 6_3:+95415999 Msa0966710:CDS
TGACCTGCCTCCACCTGATA+AGG 0.493506 6_3:+95415893 Msa0966710:CDS
CAGTCTCATTAGTCTCATGT+AGG 0.495370 6_3:+95418013 Msa0966710:three_prime_UTR
TCTCTAGATTCTCACTGCTC+TGG 0.498006 6_3:-95414416 None:intergenic
AGACATGTTATCAATGAAAC+CGG 0.498567 6_3:+95416659 Msa0966710:CDS
ATCTTGGTGGCTGGATAGTA+AGG 0.498877 6_3:-95416098 None:intergenic
GACCTCGTCCAGTAAAATCT+AGG 0.500092 6_3:-95416810 None:intergenic
ACTTCTTTGCTTGAGGAGGA+TGG 0.501780 6_3:-95417617 None:intergenic
TGCATAGTCCAAAGACACTT+TGG 0.504638 6_3:-95416417 None:intergenic
TTTCGAAGGCCAACCTGTCT+CGG 0.507082 6_3:-95416573 None:intergenic
TATTTCCAGATTGTTGCTAC+GGG 0.509756 6_3:+95415835 Msa0966710:intron
GAACTGGGGAATAGTTTATC+CGG 0.510770 6_3:+95416768 Msa0966710:three_prime_UTR
TTTCAGAACGATTAAAGTCA+TGG 0.511255 6_3:+95416547 Msa0966710:CDS
TCATTTCCTTAAGCCACTGC+TGG 0.515706 6_3:+95416322 Msa0966710:CDS
GCCACTGCTGGAATTTCTTG+CGG 0.518386 6_3:+95416334 Msa0966710:CDS
CTTGCAGCACTCAAGAAAGC+TGG 0.520860 6_3:+95416203 Msa0966710:CDS
AGTCTCATTAGTCTCATGTA+GGG 0.523308 6_3:+95418014 Msa0966710:three_prime_UTR
GCATGCGAGACTAAGTTATC+CGG 0.533664 6_3:-95417009 None:intergenic
GGCTCAAAACAAGGCTGGCT+AGG 0.534132 6_3:-95416988 None:intergenic
CAAGTGACAGGCCAAATAGC+AGG 0.535238 6_3:+95417924 Msa0966710:three_prime_UTR
ACCAGTCCCTCCAAAACTAC+AGG 0.542420 6_3:-95417082 None:intergenic
ACACCTTATCAGGTGGAGGC+AGG 0.545767 6_3:-95415896 None:intergenic
GCAAGGACATTAGTCATGGC+TGG 0.545995 6_3:-95416185 None:intergenic
TCCGCAAGAAATTCCAGCAG+TGG 0.555308 6_3:-95416335 None:intergenic
TATCCGGCTCAAAACAAGGC+TGG 0.556154 6_3:-95416993 None:intergenic
GAAGTTATTGATCCTAACAC+TGG 0.557705 6_3:+95416458 Msa0966710:CDS
GTAGACTTCTTTGCTTGAGG+AGG 0.562432 6_3:-95417621 None:intergenic
GCCTTCGAAAGGTTCACCTA+AGG 0.564951 6_3:+95416586 Msa0966710:CDS
TTGTGGTACTTCTGGAAATG+TGG 0.570623 6_3:+95416948 Msa0966710:three_prime_UTR
TCCAAACTAATGCAGACACT+TGG 0.571386 6_3:+95416057 Msa0966710:CDS
AAGTTATCCGGCTCAAAACA+AGG 0.571467 6_3:-95416997 None:intergenic
ATGTATGTGATCTTGGTGGC+TGG 0.572695 6_3:-95416107 None:intergenic
CAGCTTTCTTGAGTGCTGCA+AGG 0.575770 6_3:-95416202 None:intergenic
ACTGTATCTACATGAAAACT+GGG 0.579075 6_3:+95417418 Msa0966710:three_prime_UTR
AGGATCAATAACTTCGGAGG+AGG 0.583202 6_3:-95416450 None:intergenic
TCCTTAGGTGAACCTTTCGA+AGG 0.584583 6_3:-95416587 None:intergenic
TAAAAGCACCAGCCGAAGGA+GGG 0.585860 6_3:-95416286 None:intergenic
TTAAAAGCACCAGCCGAAGG+AGG 0.586198 6_3:-95416287 None:intergenic
GAGACAGGTTGGCCTTCGAA+AGG 0.589766 6_3:+95416575 Msa0966710:CDS
TGAGTAGACTTCTTTGCTTG+AGG 0.590263 6_3:-95417624 None:intergenic
CTATTAAAAGCACCAGCCGA+AGG 0.592401 6_3:-95416290 None:intergenic
TAGTCCAAAGACACTTTGGT+TGG 0.592684 6_3:-95416413 None:intergenic
TGGTGGCTGGATAGTAAGGA+AGG 0.592958 6_3:-95416094 None:intergenic
ACCTGATAAGGTGTCACAGT+TGG 0.594346 6_3:+95415905 Msa0966710:CDS
CAAGTTTGATCGATGACAAG+AGG 0.595306 6_3:+95417713 Msa0966710:three_prime_UTR
TAGAGAGAACAATGGCAAGA+GGG 0.597917 6_3:+95414439 Msa0966710:exon
AACTGTGACACCTTATCAGG+TGG 0.598360 6_3:-95415903 None:intergenic
AGCCAGGTTTGGAATCTGAA+AGG 0.606292 6_3:+95416746 Msa0966710:three_prime_UTR
CGATCGAGACAAAACTCCAA+GGG 0.611926 6_3:-95416261 None:intergenic
ATAGAGAGAACAATGGCAAG+AGG 0.613986 6_3:+95414438 Msa0966710:exon
ACTAGTAGCATTTGCATCTG+CGG 0.616757 6_3:-95416845 None:intergenic
TGTGACACCTTATCAGGTGG+AGG 0.617208 6_3:-95415900 None:intergenic
GTAGACGTCTAGCTCTTCCC+CGG 0.619282 6_3:-95416695 None:intergenic
TCATGGTAACCGAGACAGGT+TGG 0.619747 6_3:+95416564 Msa0966710:CDS
TCTTTGCTTGAGGAGGATGG+AGG 0.619966 6_3:-95417614 None:intergenic
TTTGGAATCTGAAAGGAACT+GGG 0.623413 6_3:+95416753 Msa0966710:three_prime_UTR
AATGCGATAAATTGGGCTTG+TGG 0.631670 6_3:+95416931 Msa0966710:three_prime_UTR
TTAGTTTGGAACTGAGAGAA+CGG 0.632833 6_3:-95416044 None:intergenic
AGTGTTAGGATCAATAACTT+CGG 0.634976 6_3:-95416456 None:intergenic
GTCTCATTAGTCTCATGTAG+GGG 0.637612 6_3:+95418015 Msa0966710:three_prime_UTR
CATGGCTGGCACAACTAATG+CGG 0.643202 6_3:-95416171 None:intergenic
CCGGTACACCTGCAAAGCCG+GGG 0.644809 6_3:+95416678 Msa0966710:CDS
TCTAGAGATAGAGAGAACAA+TGG 0.645847 6_3:+95414431 Msa0966710:exon
ATGTAGGGGATGTATAACAA+TGG 0.646553 6_3:+95418029 Msa0966710:three_prime_UTR
ACGATCGAGACAAAACTCCA+AGG 0.647815 6_3:-95416262 None:intergenic
TCCAATCATAAGTTCGACGC+CGG 0.648715 6_3:-95416000 None:intergenic
GTTAGGATCAATAACTTCGG+AGG 0.650725 6_3:-95416453 None:intergenic
CAGATAAAGACATAAAGTAA+CGG 0.651037 6_3:-95414358 None:intergenic
AAGATCACATACATAACTGT+CGG 0.658420 6_3:+95416116 Msa0966710:CDS
TGCTGCAAGGACATTAGTCA+TGG 0.668003 6_3:-95416189 None:intergenic
TTTGGCAAGTAATAATACAA+CGG 0.676947 6_3:+95417574 Msa0966710:three_prime_UTR
AGTTATGTATGTGATCTTGG+TGG 0.696411 6_3:-95416111 None:intergenic
TTGGAATCTGAAAGGAACTG+GGG 0.718389 6_3:+95416754 Msa0966710:three_prime_UTR
AAGCAGCATACACCTCAACG+TGG 0.802058 6_3:-95417778 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATGTAATTATAT+GGG - chr6_3:95415029-95415048 None:intergenic 10.0%
!! AATATAAAGTTATTTATGTT+TGG + chr6_3:95415170-95415189 Msa0966710:intron 10.0%
!!! TGTAAAAAAAACTATATTTT+TGG + chr6_3:95415386-95415405 Msa0966710:intron 10.0%
!! CATAATTCAATGTAATTATA+TGG - chr6_3:95415030-95415049 None:intergenic 15.0%
!! TTTCTTCTATTTCATATTAA+TGG + chr6_3:95415770-95415789 Msa0966710:intron 15.0%
!!! TTTTAGGTTTAAATATGTTA+TGG + chr6_3:95417218-95417237 Msa0966710:intron 15.0%
!!! AGATTTTCTCAAATTATTAG+CGG + chr6_3:95415050-95415069 Msa0966710:intron 20.0%
!!! TTTTAGTTAATCATGCTAAA+TGG - chr6_3:95415439-95415458 None:intergenic 20.0%
!! TTTCATTGTTCAATGAAAAT+AGG + chr6_3:95416722-95416741 Msa0966710:three_prime_UTR 20.0%
!! AAAAAAACTGAAAAATGGAA+AGG - chr6_3:95417162-95417181 None:intergenic 20.0%
!! ATACGAAAAAAACTGAAAAA+TGG - chr6_3:95417167-95417186 None:intergenic 20.0%
!!! TTTTCGTATACTTATCTTTT+CGG + chr6_3:95417178-95417197 Msa0966710:intron 20.0%
! CAGATAAAGACATAAAGTAA+CGG - chr6_3:95414361-95414380 None:intergenic 25.0%
!! TTTCTCATGTTTTCCATAAA+GGG - chr6_3:95414739-95414758 None:intergenic 25.0%
!! ATTTCTCATGTTTTCCATAA+AGG - chr6_3:95414740-95414759 None:intergenic 25.0%
! TTTATGGAAAACATGAGAAA+TGG + chr6_3:95414739-95414758 Msa0966710:intron 25.0%
! TAGACATTAATCTCATTAAG+TGG + chr6_3:95414826-95414845 Msa0966710:intron 25.0%
! ATAATCAGTTTCATTTCATG+TGG + chr6_3:95414854-95414873 Msa0966710:intron 25.0%
! TTCAATGTAATTATATGGGT+CGG - chr6_3:95415025-95415044 None:intergenic 25.0%
! TATTCAAAATCTATGAAGCA+CGG - chr6_3:95415111-95415130 None:intergenic 25.0%
! AAATGGAACAAAAGTAGTTT+AGG - chr6_3:95415422-95415441 None:intergenic 25.0%
!! AAAACAAAGCTTTGTAACAT+CGG + chr6_3:95415455-95415474 Msa0966710:intron 25.0%
!!! TGCAATTTATTTTGCGTTAA+CGG + chr6_3:95416517-95416536 Msa0966710:CDS 25.0%
! TTATATGTTTGTGCATTATC+AGG - chr6_3:95416626-95416645 None:intergenic 25.0%
! ACTTACAAAATGCGATAAAT+TGG + chr6_3:95416923-95416942 Msa0966710:three_prime_UTR 25.0%
! CTTACAAAATGCGATAAATT+GGG + chr6_3:95416924-95416943 Msa0966710:three_prime_UTR 25.0%
! AGGCAAATTAATTAAGTGAT+GGG - chr6_3:95417142-95417161 None:intergenic 25.0%
! AAGGCAAATTAATTAAGTGA+TGG - chr6_3:95417143-95417162 None:intergenic 25.0%
! GGAAAATATTGCATATTTAC+AGG - chr6_3:95417246-95417265 None:intergenic 25.0%
! AAAAAAATAGCAAGGACAAA+TGG - chr6_3:95417267-95417286 None:intergenic 25.0%
!!! ATTTGTCCTTGCTATTTTTT+TGG + chr6_3:95417266-95417285 Msa0966710:intron 25.0%
! CAAAGATGAACAAATTTATC+AGG - chr6_3:95417293-95417312 None:intergenic 25.0%
! AAATCATCTACACATATTAC+AGG - chr6_3:95417322-95417341 None:intergenic 25.0%
!! AACCAACAAAGAAATTTTCA+AGG - chr6_3:95417454-95417473 None:intergenic 25.0%
! CTTCAGTCTTAATAATGATA+AGG - chr6_3:95417503-95417522 None:intergenic 25.0%
! TATTATTACTTGCCAAAGTT+TGG - chr6_3:95417571-95417590 None:intergenic 25.0%
! TTTGGCAAGTAATAATACAA+CGG + chr6_3:95417574-95417593 Msa0966710:three_prime_UTR 25.0%
!!! ATTAATTTTTTACCACGTTG+AGG + chr6_3:95417766-95417785 Msa0966710:three_prime_UTR 25.0%
! TACTTTTGTTGCATGTTTCT+TGG + chr6_3:95414562-95414581 Msa0966710:intron 30.0%
! ACTTTTTGTTGCATGTTTCT+TGG + chr6_3:95414634-95414653 Msa0966710:intron 30.0%
AAATGGAAGACTTCTAAGTT+TGG + chr6_3:95414756-95414775 Msa0966710:intron 30.0%
! TTTGGAACTAGATAGAAGAT+AGG + chr6_3:95414774-95414793 Msa0966710:intron 30.0%
TAACTCACATTTGAGAGATT+TGG + chr6_3:95415354-95415373 Msa0966710:intron 30.0%
! AACATCGGTTAAGAATTTGT+TGG + chr6_3:95415470-95415489 Msa0966710:intron 30.0%
TTTGACTAATGACATTGACA+TGG - chr6_3:95415500-95415519 None:intergenic 30.0%
TTATTTCCAGATTGTTGCTA+CGG + chr6_3:95415834-95415853 Msa0966710:intron 30.0%
! CTAAAATCTTTTGCAAACAC+CGG + chr6_3:95415981-95416000 Msa0966710:CDS 30.0%
AAGATCACATACATAACTGT+CGG + chr6_3:95416116-95416135 Msa0966710:CDS 30.0%
! AACTAATGCGGAAATGTTTT+CGG - chr6_3:95416162-95416181 None:intergenic 30.0%
AGTGTTAGGATCAATAACTT+CGG - chr6_3:95416459-95416478 None:intergenic 30.0%
TTTCAGAACGATTAAAGTCA+TGG + chr6_3:95416547-95416566 Msa0966710:CDS 30.0%
GATAACATGTCTTATCAGAT+TGG - chr6_3:95416651-95416670 None:intergenic 30.0%
AGACATGTTATCAATGAAAC+CGG + chr6_3:95416659-95416678 Msa0966710:CDS 30.0%
CAACTTCAAATGGAACAAAA+TGG + chr6_3:95416869-95416888 Msa0966710:three_prime_UTR 30.0%
AATAGCTATTACCAGCAAAA+TGG + chr6_3:95417045-95417064 Msa0966710:three_prime_UTR 30.0%
!!! AGCTATTGCATGCTTTTTTT+AGG + chr6_3:95417202-95417221 Msa0966710:intron 30.0%
AACTGTATCTACATGAAAAC+TGG + chr6_3:95417417-95417436 Msa0966710:three_prime_UTR 30.0%
ACTGTATCTACATGAAAACT+GGG + chr6_3:95417418-95417437 Msa0966710:three_prime_UTR 30.0%
GTCCTTGAAAATTTCTTTGT+TGG + chr6_3:95417449-95417468 Msa0966710:intron 30.0%
AGGCGTAATACAACAATTTA+CGG - chr6_3:95417483-95417502 None:intergenic 30.0%
! GATCTTTCTCCTTTTTCTTT+TGG + chr6_3:95417673-95417692 Msa0966710:three_prime_UTR 30.0%
! CTCCTTTTTCTTTTGGATAT+CGG + chr6_3:95417680-95417699 Msa0966710:three_prime_UTR 30.0%
! TACTTTTGTATTCAAGTGAC+AGG + chr6_3:95417912-95417931 Msa0966710:three_prime_UTR 30.0%
AAAATGTTCATCCTGCTATT+TGG - chr6_3:95417938-95417957 None:intergenic 30.0%
! ACTTTTGAATGTGGAAGTTT+AGG + chr6_3:95417988-95418007 Msa0966710:three_prime_UTR 30.0%
TCTAGAGATAGAGAGAACAA+TGG + chr6_3:95414431-95414450 Msa0966710:exon 35.0%
! TCAGTTTTGCTTATGCTTCT+TGG + chr6_3:95414486-95414505 Msa0966710:CDS 35.0%
!! GTTAAGCTTGTTACCCTTTA+TGG + chr6_3:95414723-95414742 Msa0966710:intron 35.0%
! ACTACATGGTTGGTTAATGA+TGG - chr6_3:95414895-95414914 None:intergenic 35.0%
! CTTGATTTTGAACTGAAGCA+CGG + chr6_3:95414941-95414960 Msa0966710:intron 35.0%
TCTCAAATTATTAGCGGTGT+TGG + chr6_3:95415056-95415075 Msa0966710:intron 35.0%
TTTATGTTTGGATACACTCG+TGG + chr6_3:95415182-95415201 Msa0966710:intron 35.0%
TGTCACTATCGTATGAATGT+TGG - chr6_3:95415240-95415259 None:intergenic 35.0%
ATGGAACAAATGTGGTTGTA+GGG - chr6_3:95415592-95415611 None:intergenic 35.0%
TACATTCATTCGAGTGAAAC+TGG - chr6_3:95415657-95415676 None:intergenic 35.0%
CACTCGAATGAATGTAATGT+TGG + chr6_3:95415661-95415680 Msa0966710:intron 35.0%
CGAATGAATGTAATGTTGGT+TGG + chr6_3:95415665-95415684 Msa0966710:intron 35.0%
TATTTCCAGATTGTTGCTAC+GGG + chr6_3:95415835-95415854 Msa0966710:intron 35.0%
!!! AGTTTTGTCGGAATTTGCTA+TGG + chr6_3:95415858-95415877 Msa0966710:CDS 35.0%
AACGGAAGCAAATCTAGATT+TGG - chr6_3:95416029-95416048 None:intergenic 35.0%
! TTAGTTTGGAACTGAGAGAA+CGG - chr6_3:95416047-95416066 None:intergenic 35.0%
AGTTATGTATGTGATCTTGG+TGG - chr6_3:95416114-95416133 None:intergenic 35.0%
GACAGTTATGTATGTGATCT+TGG - chr6_3:95416117-95416136 None:intergenic 35.0%
! ACTAATGCGGAAATGTTTTC+GGG - chr6_3:95416161-95416180 None:intergenic 35.0%
GGATACAGATCGATCATAAA+AGG - chr6_3:95416371-95416390 None:intergenic 35.0%
GAAGTTATTGATCCTAACAC+TGG + chr6_3:95416458-95416477 Msa0966710:CDS 35.0%
GTATAAAGCAAACCAGTGTT+AGG - chr6_3:95416473-95416492 None:intergenic 35.0%
TTCAATGAAAATAGGAAGCC+AGG + chr6_3:95416730-95416749 Msa0966710:three_prime_UTR 35.0%
! TTTGGAATCTGAAAGGAACT+GGG + chr6_3:95416753-95416772 Msa0966710:three_prime_UTR 35.0%
GCTACTAGTTCAACTTCAAA+TGG + chr6_3:95416859-95416878 Msa0966710:three_prime_UTR 35.0%
TGATGGGATATGAACATACT+TGG - chr6_3:95417126-95417145 None:intergenic 35.0%
TCAGGACCAAAAAAATAGCA+AGG - chr6_3:95417275-95417294 None:intergenic 35.0%
CATGTAGATACAGTTGTCAT+AGG - chr6_3:95417412-95417431 None:intergenic 35.0%
GTCCGATATCCAAAAGAAAA+AGG - chr6_3:95417685-95417704 None:intergenic 35.0%
! TGTCATCGATCAAACTTGTT+AGG - chr6_3:95417711-95417730 None:intergenic 35.0%
CAAGCTTTCGATTGTTGAAA+AGG + chr6_3:95417736-95417755 Msa0966710:three_prime_UTR 35.0%
! AGCAGGATGAACATTTTATG+TGG + chr6_3:95417941-95417960 Msa0966710:three_prime_UTR 35.0%
! AGTCTCATTAGTCTCATGTA+GGG + chr6_3:95418014-95418033 Msa0966710:three_prime_UTR 35.0%
ATGTAGGGGATGTATAACAA+TGG + chr6_3:95418029-95418048 Msa0966710:three_prime_UTR 35.0%
TGTTCTTGTTCTTGCTTGCT+TGG - chr6_3:95414386-95414405 None:intergenic 40.0%
ATAGAGAGAACAATGGCAAG+AGG + chr6_3:95414438-95414457 Msa0966710:exon 40.0%
TAGAGAGAACAATGGCAAGA+GGG + chr6_3:95414439-95414458 Msa0966710:exon 40.0%
! AAGAGGGTTTTGCTTCATCT+TGG + chr6_3:95414455-95414474 Msa0966710:CDS 40.0%
ATAACCGAACACACACTACA+TGG - chr6_3:95414909-95414928 None:intergenic 40.0%
GTAATTATATGGGTCGGTGT+CGG - chr6_3:95415019-95415038 None:intergenic 40.0%
TCGTGGACACTTAAGTTTGA+AGG + chr6_3:95415199-95415218 Msa0966710:intron 40.0%
TCTATAAAAGGTGGTCAACC+AGG - chr6_3:95415564-95415583 None:intergenic 40.0%
TGTAGGGGAGACTCTATAAA+AGG - chr6_3:95415576-95415595 None:intergenic 40.0%
TGGAACAAATGTGGTTGTAG+GGG - chr6_3:95415591-95415610 None:intergenic 40.0%
GATGGAACAAATGTGGTTGT+AGG - chr6_3:95415593-95415612 None:intergenic 40.0%
TCCAAACTAATGCAGACACT+TGG + chr6_3:95416057-95416076 Msa0966710:CDS 40.0%
TTCGGGACTTTCTGTAACTT+CGG - chr6_3:95416144-95416163 None:intergenic 40.0%
GAGTCACGATATGCGTAATA+AGG - chr6_3:95416392-95416411 None:intergenic 40.0%
TAGTCCAAAGACACTTTGGT+TGG - chr6_3:95416416-95416435 None:intergenic 40.0%
TGCATAGTCCAAAGACACTT+TGG - chr6_3:95416420-95416439 None:intergenic 40.0%
GTTAGGATCAATAACTTCGG+AGG - chr6_3:95416456-95416475 None:intergenic 40.0%
TGAAAATAGGAAGCCAGGTT+TGG + chr6_3:95416735-95416754 Msa0966710:three_prime_UTR 40.0%
TTCCTTTCAGATTCCAAACC+TGG - chr6_3:95416751-95416770 None:intergenic 40.0%
! GTTTGGAATCTGAAAGGAAC+TGG + chr6_3:95416752-95416771 Msa0966710:three_prime_UTR 40.0%
TTGGAATCTGAAAGGAACTG+GGG + chr6_3:95416754-95416773 Msa0966710:three_prime_UTR 40.0%
GAACTGGGGAATAGTTTATC+CGG + chr6_3:95416768-95416787 Msa0966710:three_prime_UTR 40.0%
! GTGTACAGCCTAGATTTTAC+TGG + chr6_3:95416802-95416821 Msa0966710:three_prime_UTR 40.0%
ACTAGTAGCATTTGCATCTG+CGG - chr6_3:95416848-95416867 None:intergenic 40.0%
AATGCGATAAATTGGGCTTG+TGG + chr6_3:95416931-95416950 Msa0966710:three_prime_UTR 40.0%
! TTGTGGTACTTCTGGAAATG+TGG + chr6_3:95416948-95416967 Msa0966710:three_prime_UTR 40.0%
AAGTTATCCGGCTCAAAACA+AGG - chr6_3:95417000-95417019 None:intergenic 40.0%
! TCTGATGTTGCCTGTAGTTT+TGG + chr6_3:95417072-95417091 Msa0966710:three_prime_UTR 40.0%
!!! ATGTTGCCTGTAGTTTTGGA+GGG + chr6_3:95417076-95417095 Msa0966710:three_prime_UTR 40.0%
! GACTGGTGTACTTGTTGATA+AGG + chr6_3:95417098-95417117 Msa0966710:three_prime_UTR 40.0%
!! GGTTAGTTCTGCACAAAAAC+AGG - chr6_3:95417550-95417569 None:intergenic 40.0%
GTGCAGAACTAACCAAACTT+TGG + chr6_3:95417556-95417575 Msa0966710:intron 40.0%
TGAGTAGACTTCTTTGCTTG+AGG - chr6_3:95417627-95417646 None:intergenic 40.0%
CAAGTTTGATCGATGACAAG+AGG + chr6_3:95417713-95417732 Msa0966710:three_prime_UTR 40.0%
! GTTGCTGCAACTTTTGAATG+TGG + chr6_3:95417979-95417998 Msa0966710:three_prime_UTR 40.0%
! CAGTCTCATTAGTCTCATGT+AGG + chr6_3:95418013-95418032 Msa0966710:three_prime_UTR 40.0%
! GTCTCATTAGTCTCATGTAG+GGG + chr6_3:95418015-95418034 Msa0966710:three_prime_UTR 40.0%
TCTCTAGATTCTCACTGCTC+TGG - chr6_3:95414419-95414438 None:intergenic 45.0%
CCAACCATGTAGTGTGTGTT+CGG + chr6_3:95414902-95414921 Msa0966710:intron 45.0%
GTAGTGTGTGTTCGGTTATG+CGG + chr6_3:95414910-95414929 Msa0966710:intron 45.0%
AATTACAGGTGTCCCGTTGT+CGG + chr6_3:95414974-95414993 Msa0966710:intron 45.0%
AATCTATGAAGCACGGACAC+TGG - chr6_3:95415104-95415123 None:intergenic 45.0%
TAAACCCTATGAGACACCGT+CGG - chr6_3:95415336-95415355 None:intergenic 45.0%
TCAGTCAACGACTAAGTCAG+TGG - chr6_3:95415527-95415546 None:intergenic 45.0%
! AGTCGTTGACTGACATTCGT+TGG + chr6_3:95415534-95415553 Msa0966710:intron 45.0%
! GTCGTTGACTGACATTCGTT+GGG + chr6_3:95415535-95415554 Msa0966710:intron 45.0%
! TCGTTGACTGACATTCGTTG+GGG + chr6_3:95415536-95415555 Msa0966710:intron 45.0%
AGGGGAGACTCTATAAAAGG+TGG - chr6_3:95415573-95415592 None:intergenic 45.0%
CCTTGTCGATGGAACAAATG+TGG - chr6_3:95415600-95415619 None:intergenic 45.0%
CCACATTTGTTCCATCGACA+AGG + chr6_3:95415597-95415616 Msa0966710:intron 45.0%
CATTCGAGTGAAACTGGACT+CGG - chr6_3:95415651-95415670 None:intergenic 45.0%
AAACTCCCGTAGCAACAATC+TGG - chr6_3:95415843-95415862 None:intergenic 45.0%
!! TGTTGCTACGGGAGTTTTGT+CGG + chr6_3:95415846-95415865 Msa0966710:CDS 45.0%
AACTGTGACACCTTATCAGG+TGG - chr6_3:95415906-95415925 None:intergenic 45.0%
! ACCTGATAAGGTGTCACAGT+TGG + chr6_3:95415905-95415924 Msa0966710:CDS 45.0%
ACCAACTGTGACACCTTATC+AGG - chr6_3:95415909-95415928 None:intergenic 45.0%
TCCAATCATAAGTTCGACGC+CGG - chr6_3:95416003-95416022 None:intergenic 45.0%
GCCAAGTGTCTGCATTAGTT+TGG - chr6_3:95416061-95416080 None:intergenic 45.0%
! ATCTTGGTGGCTGGATAGTA+AGG - chr6_3:95416101-95416120 None:intergenic 45.0%
! ATGTATGTGATCTTGGTGGC+TGG - chr6_3:95416110-95416129 None:intergenic 45.0%
TGCTGCAAGGACATTAGTCA+TGG - chr6_3:95416192-95416211 None:intergenic 45.0%
GTTTCCAGTACTCATTCCCT+TGG + chr6_3:95416245-95416264 Msa0966710:CDS 45.0%
AACTCCAAGGGAATGAGTAC+TGG - chr6_3:95416252-95416271 None:intergenic 45.0%
CGATCGAGACAAAACTCCAA+GGG - chr6_3:95416264-95416283 None:intergenic 45.0%
ACGATCGAGACAAAACTCCA+AGG - chr6_3:95416265-95416284 None:intergenic 45.0%
!! CTATTAAAAGCACCAGCCGA+AGG - chr6_3:95416293-95416312 None:intergenic 45.0%
TCATTTCCTTAAGCCACTGC+TGG + chr6_3:95416322-95416341 Msa0966710:CDS 45.0%
GAAATTCCAGCAGTGGCTTA+AGG - chr6_3:95416331-95416350 None:intergenic 45.0%
! CTCTCCAACCAAAGTGTCTT+TGG + chr6_3:95416409-95416428 Msa0966710:CDS 45.0%
AGGATCAATAACTTCGGAGG+AGG - chr6_3:95416453-95416472 None:intergenic 45.0%
AAAGTCATGGTAACCGAGAC+AGG + chr6_3:95416560-95416579 Msa0966710:CDS 45.0%
TCCTTAGGTGAACCTTTCGA+AGG - chr6_3:95416590-95416609 None:intergenic 45.0%
! AGCCAGGTTTGGAATCTGAA+AGG + chr6_3:95416746-95416765 Msa0966710:three_prime_UTR 45.0%
! CTGTACACGTTTGTTAGGTC+CGG - chr6_3:95416790-95416809 None:intergenic 45.0%
CTAGGCTGTACACGTTTGTT+AGG - chr6_3:95416795-95416814 None:intergenic 45.0%
! AGCCTAGATTTTACTGGACG+AGG + chr6_3:95416808-95416827 Msa0966710:three_prime_UTR 45.0%
GACCTCGTCCAGTAAAATCT+AGG - chr6_3:95416813-95416832 None:intergenic 45.0%
AATTGGGCTTGTGGTACTTC+TGG + chr6_3:95416940-95416959 Msa0966710:three_prime_UTR 45.0%
GCATGCGAGACTAAGTTATC+CGG - chr6_3:95417012-95417031 None:intergenic 45.0%
!!! CATCAGAAGCACCATTTTGC+TGG - chr6_3:95417059-95417078 None:intergenic 45.0%
!!! GATGTTGCCTGTAGTTTTGG+AGG + chr6_3:95417075-95417094 Msa0966710:three_prime_UTR 45.0%
ACTTCTTTGCTTGAGGAGGA+TGG - chr6_3:95417620-95417639 None:intergenic 45.0%
GTAGACTTCTTTGCTTGAGG+AGG - chr6_3:95417624-95417643 None:intergenic 45.0%
!!! GTTGAGGTGTATGCTGCTTT+TGG + chr6_3:95417782-95417801 Msa0966710:three_prime_UTR 45.0%
CCGAACACACACTACATGGT+TGG - chr6_3:95414905-95414924 None:intergenic 50.0%
ACGGACACTCCTCGAATTAC+AGG + chr6_3:95414960-95414979 Msa0966710:intron 50.0%
AACGGGACACCTGTAATTCG+AGG - chr6_3:95414972-95414991 None:intergenic 50.0%
ACACGACATGTGTCCGACAA+CGG - chr6_3:95414990-95415009 None:intergenic 50.0%
TGTGACACCTTATCAGGTGG+AGG - chr6_3:95415903-95415922 None:intergenic 50.0%
! ACCGGCGTCGAACTTATGAT+TGG + chr6_3:95415999-95416018 Msa0966710:CDS 50.0%
TGGTGGCTGGATAGTAAGGA+AGG - chr6_3:95416097-95416116 None:intergenic 50.0%
CATGGCTGGCACAACTAATG+CGG - chr6_3:95416174-95416193 None:intergenic 50.0%
GCAAGGACATTAGTCATGGC+TGG - chr6_3:95416188-95416207 None:intergenic 50.0%
! CAGCTTTCTTGAGTGCTGCA+AGG - chr6_3:95416205-95416224 None:intergenic 50.0%
CTTGCAGCACTCAAGAAAGC+TGG + chr6_3:95416203-95416222 Msa0966710:CDS 50.0%
!! TAAAAGCACCAGCCGAAGGA+GGG - chr6_3:95416289-95416308 None:intergenic 50.0%
!! TTAAAAGCACCAGCCGAAGG+AGG - chr6_3:95416290-95416309 None:intergenic 50.0%
GCCACTGCTGGAATTTCTTG+CGG + chr6_3:95416334-95416353 Msa0966710:CDS 50.0%
TCCGCAAGAAATTCCAGCAG+TGG - chr6_3:95416338-95416357 None:intergenic 50.0%
TCATGGTAACCGAGACAGGT+TGG + chr6_3:95416564-95416583 Msa0966710:CDS 50.0%
TTTCGAAGGCCAACCTGTCT+CGG - chr6_3:95416576-95416595 None:intergenic 50.0%
GCCTTCGAAAGGTTCACCTA+AGG + chr6_3:95416586-95416605 Msa0966710:CDS 50.0%
!!! TAGCCAGCCTTGTTTTGAGC+CGG + chr6_3:95416990-95417009 Msa0966710:three_prime_UTR 50.0%
TATCCGGCTCAAAACAAGGC+TGG - chr6_3:95416996-95417015 None:intergenic 50.0%
ACCAGTCCCTCCAAAACTAC+AGG - chr6_3:95417085-95417104 None:intergenic 50.0%
TCTTTGCTTGAGGAGGATGG+AGG - chr6_3:95417617-95417636 None:intergenic 50.0%
AAGCAGCATACACCTCAACG+TGG - chr6_3:95417781-95417800 None:intergenic 50.0%
!!! GTATGCTGCTTTTGGCACGA+AGG + chr6_3:95417790-95417809 Msa0966710:three_prime_UTR 50.0%
CAAGTGACAGGCCAAATAGC+AGG + chr6_3:95417924-95417943 Msa0966710:three_prime_UTR 50.0%
CACGACATGTGTCCGACAAC+GGG - chr6_3:95414989-95415008 None:intergenic 55.0%
TTGTGTGTGTCCGAGTCCGA+CGG + chr6_3:95415317-95415336 Msa0966710:intron 55.0%
CTATGAGACACCGTCGGACT+CGG - chr6_3:95415330-95415349 None:intergenic 55.0%
GAGTCCGACGGTGTCTCATA+GGG + chr6_3:95415329-95415348 Msa0966710:intron 55.0%
CTGACATTCGTTGGGGAACC+TGG + chr6_3:95415543-95415562 Msa0966710:intron 55.0%
! TCATGTGCGAGCCTTGTCGA+TGG - chr6_3:95415611-95415630 None:intergenic 55.0%
TGACCTGCCTCCACCTGATA+AGG + chr6_3:95415893-95415912 Msa0966710:CDS 55.0%
ACACCTTATCAGGTGGAGGC+AGG - chr6_3:95415899-95415918 None:intergenic 55.0%
GTCTCGATCGTTCCCTCCTT+CGG + chr6_3:95416274-95416293 Msa0966710:CDS 55.0%
!! GAGACAGGTTGGCCTTCGAA+AGG + chr6_3:95416575-95416594 Msa0966710:CDS 55.0%
GGAGTAGCAGCTGTCTCCTT+AGG - chr6_3:95416605-95416624 None:intergenic 55.0%
AACCGGTACACCTGCAAAGC+CGG + chr6_3:95416676-95416695 Msa0966710:CDS 55.0%
!! GTAGACGTCTAGCTCTTCCC+CGG - chr6_3:95416698-95416717 None:intergenic 55.0%
GCATCTGCGGTCATGTCAAC+AGG - chr6_3:95416835-95416854 None:intergenic 55.0%
! GGCTCAAAACAAGGCTGGCT+AGG - chr6_3:95416991-95417010 None:intergenic 55.0%
!!! GCCTGTAGTTTTGGAGGGAC+TGG + chr6_3:95417081-95417100 Msa0966710:three_prime_UTR 55.0%
CACGGACACTGGACACGACA+CGG - chr6_3:95415093-95415112 None:intergenic 60.0%
CGAGTCCGACGGTGTCTCAT+AGG + chr6_3:95415328-95415347 Msa0966710:intron 60.0%
ACCGGTACACCTGCAAAGCC+GGG + chr6_3:95416677-95416696 Msa0966710:CDS 60.0%
TAGCTCTTCCCCGGCTTTGC+AGG - chr6_3:95416689-95416708 None:intergenic 60.0%
CGATCGTTCCCTCCTTCGGC+TGG + chr6_3:95416278-95416297 Msa0966710:CDS 65.0%
CCCCGGCTTTGCAGGTGTAC+CGG - chr6_3:95416681-95416700 None:intergenic 65.0%
CCGGTACACCTGCAAAGCCG+GGG + chr6_3:95416678-95416697 Msa0966710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 95414349 95418076 95414349 ID=Msa0966710;Name=Msa0966710
chr6_3 mRNA 95414349 95418076 95414349 ID=Msa0966710-mRNA-1;Parent=Msa0966710;Name=Msa0966710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=101|1|1|1|1|0.75|4|963|307
chr6_3 exon 95414349 95414507 95414349 ID=Msa0966710-mRNA-1:exon:17670;Parent=Msa0966710-mRNA-1
chr6_3 exon 95415844 95417126 95415844 ID=Msa0966710-mRNA-1:exon:17671;Parent=Msa0966710-mRNA-1
chr6_3 exon 95417409 95417439 95417409 ID=Msa0966710-mRNA-1:exon:17672;Parent=Msa0966710-mRNA-1
chr6_3 exon 95417562 95418076 95417562 ID=Msa0966710-mRNA-1:exon:17673;Parent=Msa0966710-mRNA-1
chr6_3 five_prime_UTR 95414349 95414449 95414349 ID=Msa0966710-mRNA-1:five_prime_utr;Parent=Msa0966710-mRNA-1
chr6_3 CDS 95414450 95414507 95414450 ID=Msa0966710-mRNA-1:cds;Parent=Msa0966710-mRNA-1
chr6_3 CDS 95415844 95416709 95415844 ID=Msa0966710-mRNA-1:cds;Parent=Msa0966710-mRNA-1
chr6_3 three_prime_UTR 95416710 95417126 95416710 ID=Msa0966710-mRNA-1:three_prime_utr;Parent=Msa0966710-mRNA-1
chr6_3 three_prime_UTR 95417409 95417439 95417409 ID=Msa0966710-mRNA-1:three_prime_utr;Parent=Msa0966710-mRNA-1
chr6_3 three_prime_UTR 95417562 95418076 95417562 ID=Msa0966710-mRNA-1:three_prime_utr;Parent=Msa0966710-mRNA-1
Gene Sequence

>Msa0966710

ATGGCAAGAGGGTTTTGCTTCATCTTGGTTGTTGCTTCAGTTTTGCTTATGCTTCTTGATTGTTGCTACGGGAGTTTTGTCGGAATTTGCTATGGAAGAAATGCTGATGACCTGCCTCCACCTGATAAGGTGTCACAGTTGGTTCAAGATCACAAAATCAAATATGTCAGAATTTACGATTCTAACATACAAGTTCTAAAATCTTTTGCAAACACCGGCGTCGAACTTATGATTGGAATTCCAAATCTAGATTTGCTTCCGTTCTCTCAGTTCCAAACTAATGCAGACACTTGGCTGAGAAATAGCATCCTTCCTTACTATCCAGCCACCAAGATCACATACATAACTGTCGGTGCCGAAGTTACAGAAAGTCCCGAAAACATTTCCGCATTAGTTGTGCCAGCCATGACTAATGTCCTTGCAGCACTCAAGAAAGCTGGACTTCATAAGAAGATAAAAGTTTCCAGTACTCATTCCCTTGGAGTTTTGTCTCGATCGTTCCCTCCTTCGGCTGGTGCTTTTAATAGCAAACATGCTCATTTCCTTAAGCCACTGCTGGAATTTCTTGCGGAAAATCAGTCGCCTTTTATGATCGATCTGTATCCTTATTACGCATATCGTGACTCTCCAACCAAAGTGTCTTTGGACTATGCATTGTTTGAGTCCTCCTCCGAAGTTATTGATCCTAACACTGGTTTGCTTTATACAAACATGTTTGATGCTCAGATTGATGCAATTTATTTTGCGTTAACGGCGTTGAATTTCAGAACGATTAAAGTCATGGTAACCGAGACAGGTTGGCCTTCGAAAGGTTCACCTAAGGAGACAGCTGCTACTCCTGATAATGCACAAACATATAATACCAATCTGATAAGACATGTTATCAATGAAACCGGTACACCTGCAAAGCCGGGGAAGAGCTAG

Protein sequence

>Msa0966710

MARGFCFILVVASVLLMLLDCCYGSFVGICYGRNADDLPPPDKVSQLVQDHKIKYVRIYDSNIQVLKSFANTGVELMIGIPNLDLLPFSQFQTNADTWLRNSILPYYPATKITYITVGAEVTESPENISALVVPAMTNVLAALKKAGLHKKIKVSSTHSLGVLSRSFPPSAGAFNSKHAHFLKPLLEFLAENQSPFMIDLYPYYAYRDSPTKVSLDYALFESSSEVIDPNTGLLYTNMFDAQIDAIYFALTALNFRTIKVMVTETGWPSKGSPKETAATPDNAQTYNTNLIRHVINETGTPAKPGKS*