AlfalfaGEDB | Msa0909760

M. sativa cultivar zhongmu-4 / Msa0909760

KEGG: K10802|K11296
GO: GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010197 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00505.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909760	XP_013470410.1	98.544	206	3	0	2	207	5	210	5.88e-142	404

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909760	sp\|Q8LDF9\|HMGB7_ARATH	54.167	168	67	5	4	164	15	179	6.87e-44	149

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0909760	TR	HMG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003080	Msa0909760	0.812278	4.594008e-51	-8.615850e-47
Msa0005020	Msa0909760	0.842398	2.649185e-58	-8.615850e-47
Msa0014770	Msa0909760	0.813720	2.218756e-51	-8.615850e-47
Msa0015570	Msa0909760	0.845492	3.925797e-59	-8.615850e-47
Msa0016040	Msa0909760	0.864025	1.635866e-64	-8.615850e-47
Msa0016530	Msa0909760	0.849397	3.319353e-60	-8.615850e-47
Msa0018920	Msa0909760	0.803854	2.858130e-49	-8.615850e-47
Msa0019930	Msa0909760	0.860897	1.499149e-63	-8.615850e-47
Msa0020540	Msa0909760	0.862653	4.350750e-64	-8.615850e-47
Msa0025160	Msa0909760	0.835713	1.429606e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909760	MtrunA17_Chr1g0212341	98.544	206	3	0	2	207	5	210	5.41e-146	404
Msa0909760	MtrunA17_Chr8g0342651	77.083	96	22	0	44	139	131	226	2.31e-43	145
Msa0909760	MtrunA17_Chr3g0143991	61.798	89	34	0	86	174	32	120	1.75e-30	109
Msa0909760	MtrunA17_Chr5g0407011	49.091	110	50	2	83	186	16	125	7.59e-28	102
Msa0909760	MtrunA17_Chr8g0370431	45.872	109	54	1	83	186	16	124	4.55e-26	98.2
Msa0909760	MtrunA17_Chr7g0242251	60.811	74	29	0	95	168	47	120	1.90e-25	97.1
Msa0909760	MtrunA17_Chr4g0052011	48.750	80	41	0	89	168	54	133	1.51e-20	84.0
Msa0909760	MtrunA17_Chr5g0421971	29.448	163	79	7	2	164	7	133	2.23e-11	60.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0909760	AT5G23420.1	54.167	168	67	5	4	164	15	179	6.98e-45	149
Msa0909760	AT4G35570.1	50.000	102	50	1	90	191	25	125	3.31e-28	103
Msa0909760	AT4G35570.2	50.000	102	50	1	90	191	25	125	3.31e-28	103
Msa0909760	AT2G17560.3	47.170	106	55	1	90	194	25	130	2.16e-26	99.0
Msa0909760	AT3G51880.2	47.826	115	54	2	94	207	48	157	3.58e-26	99.8
Msa0909760	AT2G17560.2	50.538	93	45	1	90	181	25	117	2.00e-25	96.7
Msa0909760	AT2G17560.1	50.538	93	45	1	90	181	25	117	2.00e-25	96.7
Msa0909760	AT1G20693.2	55.422	83	36	1	87	168	25	107	2.23e-25	96.7
Msa0909760	AT1G20693.3	53.535	99	42	3	87	182	25	122	2.49e-25	96.7
Msa0909760	AT1G20693.1	53.535	99	42	3	87	182	25	122	2.56e-25	96.7

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Find 68 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGAAAGCAGTTGG+TGG	0.566440	6_2:+12801720	None:intergenic
AAAAGGGCTAAAGTTGGGAA+AGG	0.581404	6_2:-12801777	Msa0909760:CDS
AAAGCAGTTGGTGGACGCTT+CGG	0.463279	6_2:+12801729	None:intergenic
AAAGGGCTAAAGTTGGGAAA+GGG	0.618574	6_2:-12801776	Msa0909760:CDS
AAATAGGTTGGTAAGGAAGC+TGG	0.492839	6_2:-12801458	Msa0909760:intron
AACATGTCTTAGTTATGTTT+AGG	0.310224	6_2:-12800841	Msa0909760:three_prime_UTR
AACTATACAACTTTAGACTA+AGG	0.481139	6_2:+12800867	None:intergenic
AACTTAAAAGGCGCTGTGAT+TGG	0.404989	6_2:-12802519	None:intergenic
ACAACTTTAGACTAAGGCAA+TGG	0.670597	6_2:+12800873	None:intergenic
ACATGATCACAAGATATGGA+AGG	0.633260	6_2:+12800705	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCCAAAATCAAAATGAATCT+CGG	-	chr6_2:12801028-12801047	Msa0909760:intron	30.0%
CAAAAGAACCAAATGCAAAA+AGG	-	chr6_2:12801321-12801340	Msa0909760:intron	30.0%
ATGAAAACAAAGAAAGCAGT+TGG	+	chr6_2:12801401-12801420	None:intergenic	30.0%
TCTTAACATCCTTTGAATCA+GGG	+	chr6_2:12801543-12801562	None:intergenic	30.0%
TGATTCAAAGGATGTTAAGA+GGG	-	chr6_2:12801543-12801562	Msa0909760:intron	30.0%
TCAACAACCTTATCCAAATA+AGG	+	chr6_2:12801829-12801848	None:intergenic	30.0%
AAACAAAATTAGAAGCCCAA+AGG	+	chr6_2:12801922-12801941	None:intergenic	30.0%
TTTGCTTTCTTTACTTAAGC+TGG	-	chr6_2:12801962-12801981	Msa0909760:intron	30.0%
CTAGCAGAAAATAATGTAAC+TGG	+	chr6_2:12802374-12802393	None:intergenic	30.0%
GAATACATGATCACAAGATA+TGG	+	chr6_2:12802417-12802436	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	12800609	12802528	12800609	ID=Msa0909760;Name=Msa0909760
chr6_2	mRNA	12800609	12802528	12800609	ID=Msa0909760-mRNA-1;Parent=Msa0909760;Name=Msa0909760-mRNA-1;_AED=0.08;_eAED=0.08;_QI=167\|1\|1\|1\|0.87\|0.77\|9\|334\|207
chr6_2	exon	12800609	12801041	12800609	ID=Msa0909760-mRNA-1:exon:2942;Parent=Msa0909760-mRNA-1
chr6_2	exon	12801228	12801320	12801228	ID=Msa0909760-mRNA-1:exon:2941;Parent=Msa0909760-mRNA-1
chr6_2	exon	12801430	12801474	12801430	ID=Msa0909760-mRNA-1:exon:2940;Parent=Msa0909760-mRNA-1
chr6_2	exon	12801573	12801630	12801573	ID=Msa0909760-mRNA-1:exon:2939;Parent=Msa0909760-mRNA-1
chr6_2	exon	12801717	12801830	12801717	ID=Msa0909760-mRNA-1:exon:2938;Parent=Msa0909760-mRNA-1
chr6_2	exon	12801932	12801977	12801932	ID=Msa0909760-mRNA-1:exon:2937;Parent=Msa0909760-mRNA-1
chr6_2	exon	12802088	12802170	12802088	ID=Msa0909760-mRNA-1:exon:2936;Parent=Msa0909760-mRNA-1
chr6_2	exon	12802254	12802337	12802254	ID=Msa0909760-mRNA-1:exon:2935;Parent=Msa0909760-mRNA-1
chr6_2	exon	12802360	12802528	12802360	ID=Msa0909760-mRNA-1:exon:2934;Parent=Msa0909760-mRNA-1
chr6_2	five_prime_UTR	12802362	12802528	12802362	ID=Msa0909760-mRNA-1:five_prime_utr;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12802360	12802361	12802360	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12802254	12802337	12802254	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12802088	12802170	12802088	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12801932	12801977	12801932	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12801717	12801830	12801717	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12801573	12801630	12801573	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12801430	12801474	12801430	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12801228	12801320	12801228	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	CDS	12800943	12801041	12800943	ID=Msa0909760-mRNA-1:cds;Parent=Msa0909760-mRNA-1
chr6_2	three_prime_UTR	12800609	12800942	12800609	ID=Msa0909760-mRNA-1:three_prime_utr;Parent=Msa0909760-mRNA-1

Gene Sequence

>Msa0909760

ATGGCAACGAAAAGGGTTGATGCCGTCGATTCTCGTTCCGCTTCAGTTCTCGTTCGTGCCAAAGATGGCAGTGCTTTCGCTAAATGTGATGAGTGTAAGAAAGATGTTCCTGTTGCACTCATTGACATGCACAATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTCGAATCTCATGCTGTTGAGCAAGCTGCTGAAGTGAAGAAACCCGAGAGGAAGAAGCCAAATTCAAAAGAACCAAATGCAAAAAGGGCTAAAGTTGGGAAAGGGAAAAAGGTTAAGGATCCTAATGCTCCGAAGCGTCCACCAACTGCTTTCTTTGTTTTCATGGATGAGTTTAGAAAGATTTTTAAGGAAGCTAACCCTGATTCAAAGGATGTTAAGAGGGTTGGTAAGGAAGCTGGTGAGAAGTGGAGGTCTCTGACTGAGGAAGAGAAGAAGCCTTATTTGGATAAGGTTGTTGAACTGAAGGCAGAATATGAGAAGGCCATGGAATTGTATAATGCTGCTACTGCTGAAAGTGAAGATCAAGAGGGTTCTGATAAGGAAGATAAGGAAGGCCAGTCTGATGACAAGGAAGCTGCTGCTGCAGGAGAGGTGGAGGAGTTAACTGATGAAGAGTAG

Protein sequence

>Msa0909760

MATKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALIDMHNCSLEAKIKMNLESHAVEQAAEVKKPERKKPNSKEPNAKRAKVGKGKKVKDPNAPKRPPTAFFVFMDEFRKIFKEANPDSKDVKRVGKEAGEKWRSLTEEEKKPYLDKVVELKAEYEKAMELYNAATAESEDQEGSDKEDKEGQSDDKEAAAAGEVEELTDEE*