AlfalfaGEDB | Msa0091710

M. sativa cultivar zhongmu-4 / Msa0091710

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091710	XP_013468353.1	91.023	479	41	1	1	477	1	479	0.0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091710	sp\|F4KCE9\|KNL2_ARATH	42.857	133	70	4	18	146	11	141	1.84e-27	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091710	A0A072VWG5	91.023	479	41	1	1	477	1	479	0.0	885

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TFs/TRs:

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Gene ID	Type	Classification
Msa0091710	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026800	Msa0091710	0.811678	6.209062e-51	-8.615850e-47
Msa0090400	Msa0091710	0.804474	2.122936e-49	-8.615850e-47
Msa0091710	Msa0122040	0.811794	5.858202e-51	-8.615850e-47
Msa0091710	Msa0122510	0.813802	2.128984e-51	-8.615850e-47
Msa0091710	Msa0520890	0.833819	4.282946e-56	-8.615850e-47
Msa0091710	Msa0765840	0.806556	7.767692e-50	-8.615850e-47
Msa0091710	Msa0845440	0.807378	5.205837e-50	-8.615850e-47
Msa0091710	Msa0945110	0.800966	1.124557e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091710	MtrunA17_Chr1g0182611	91.023	479	41	1	1	477	1	479	0.0	885
Msa0091710	MtrunA17_Chr1g0182621	68.195	349	99	3	129	477	246	582	3.62e-148	436
Msa0091710	MtrunA17_Chr1g0182621	58.537	328	120	4	22	344	26	342	7.65e-120	363
Msa0091710	MtrunA17_Chr7g0231611	35.714	140	80	5	1	137	1	133	3.06e-18	85.9
Msa0091710	MtrunA17_Chr5g0416851	35.714	140	80	5	1	137	1	133	4.27e-18	85.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0091710	AT5G02520.1	42.857	133	70	4	18	146	11	141	1.87e-28	119
Msa0091710	AT5G02520.1	54.167	48	22	0	430	477	527	574	3.50e-11	65.9
Msa0091710	AT5G02520.3	42.857	133	70	4	18	146	11	141	2.46e-28	118
Msa0091710	AT5G02520.2	43.284	134	69	5	18	146	11	142	1.22e-27	116
Msa0091710	AT5G02520.2	54.167	48	22	0	430	477	528	575	3.30e-11	65.9
Msa0091710	AT1G58210.1	39.823	113	64	2	3	115	45	153	8.33e-17	81.3

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Find 142 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATGCAAAGCCTCAA+AGG	0.537827	1_2:+73882586	Msa0091710:CDS
AAAAGAGAGACTGAACAGCA+AGG	0.661526	1_2:-73884399	None:intergenic
AAAGCCTCAAAGGAGATGAG+TGG	0.652543	1_2:+73882596	Msa0091710:CDS
AAATTTCATTCCTACTTCGT+TGG	0.500725	1_2:+73882517	Msa0091710:CDS
AACATTAATAGCACGTAACC+TGG	0.544388	1_2:-73882660	None:intergenic
AACCCCACTCATCTCCTTTG+AGG	0.416310	1_2:-73882600	None:intergenic
AAGCAGCAGCCTGCATCTGG+AGG	0.566088	1_2:+73882692	Msa0091710:CDS
AAGCCTCAAAGGAGATGAGT+GGG	0.564158	1_2:+73882597	Msa0091710:CDS
AAGTGCAACATCACTCTCAA+TGG	0.503646	1_2:+73880755	None:intergenic
AATATATACCAGCCCAATGA+TGG	0.497740	1_2:-73884021	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGTATAAAGTAACCTAGAA+AGG	-	chr1_2:73880931-73880950	None:intergenic	30.0%
TAGCTCATGTCTAAATTGTT+AGG	+	chr1_2:73881067-73881086	Msa0091710:intron	30.0%
CTCTCAATTACTATCATAAG+AGG	+	chr1_2:73881897-73881916	Msa0091710:intron	30.0%
GGTATATATGTTATCACTAG+GGG	+	chr1_2:73882040-73882059	Msa0091710:CDS	30.0%
AAATTTCATTCCTACTTCGT+TGG	+	chr1_2:73882517-73882536	Msa0091710:CDS	30.0%
TTACCATCAGATGATATTTC+TGG	-	chr1_2:73882818-73882837	None:intergenic	30.0%
AGAGTTTAACATTATGCAAC+CGG	-	chr1_2:73883099-73883118	None:intergenic	30.0%
GAATAGTAAACACATTGTCT+GGG	+	chr1_2:73883251-73883270	Msa0091710:CDS	30.0%
GAGGTTGTTATAAGAGAAAA+AGG	+	chr1_2:73883329-73883348	Msa0091710:CDS	30.0%
CTTCATGAATTGACAATGAT+TGG	-	chr1_2:73883530-73883549	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	73880764	73884503	73880764	ID=Msa0091710;Name=Msa0091710
chr1_2	mRNA	73880764	73884503	73880764	ID=Msa0091710-mRNA-1;Parent=Msa0091710;Name=Msa0091710-mRNA-1;_AED=0.09;_eAED=0.09;_QI=10\|1\|1\|1\|0.87\|0.77\|9\|377\|477
chr1_2	exon	73880764	73880848	73880764	ID=Msa0091710-mRNA-1:exon:25956;Parent=Msa0091710-mRNA-1
chr1_2	exon	73880937	73881013	73880937	ID=Msa0091710-mRNA-1:exon:25957;Parent=Msa0091710-mRNA-1
chr1_2	exon	73881964	73882108	73881964	ID=Msa0091710-mRNA-1:exon:25958;Parent=Msa0091710-mRNA-1
chr1_2	exon	73882250	73882397	73882250	ID=Msa0091710-mRNA-1:exon:25959;Parent=Msa0091710-mRNA-1
chr1_2	exon	73882510	73882833	73882510	ID=Msa0091710-mRNA-1:exon:25960;Parent=Msa0091710-mRNA-1
chr1_2	exon	73882945	73883517	73882945	ID=Msa0091710-mRNA-1:exon:25961;Parent=Msa0091710-mRNA-1
chr1_2	exon	73883721	73883779	73883721	ID=Msa0091710-mRNA-1:exon:25962;Parent=Msa0091710-mRNA-1
chr1_2	exon	73883958	73884034	73883958	ID=Msa0091710-mRNA-1:exon:25963;Parent=Msa0091710-mRNA-1
chr1_2	exon	73884171	73884503	73884171	ID=Msa0091710-mRNA-1:exon:25964;Parent=Msa0091710-mRNA-1
chr1_2	five_prime_UTR	73880764	73880773	73880764	ID=Msa0091710-mRNA-1:five_prime_utr;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73880774	73880848	73880774	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73880937	73881013	73880937	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73881964	73882108	73881964	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73882250	73882397	73882250	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73882510	73882833	73882510	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73882945	73883517	73882945	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73883721	73883779	73883721	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	CDS	73883958	73883990	73883958	ID=Msa0091710-mRNA-1:cds;Parent=Msa0091710-mRNA-1
chr1_2	three_prime_UTR	73883991	73884034	73883991	ID=Msa0091710-mRNA-1:three_prime_utr;Parent=Msa0091710-mRNA-1
chr1_2	three_prime_UTR	73884171	73884503	73884171	ID=Msa0091710-mRNA-1:three_prime_utr;Parent=Msa0091710-mRNA-1

Gene Sequence

>Msa0091710

ATGGTTGATTCCACACCTCCAACTGCAACCATTTCTTCCAATGGCACCCCCACTTCTTCTAGTTTCCGACGAACGGTTACTTTATACGATTGGTGGCTCGTTAAATCATCTCAAGGAAACCGTTTAGCCATCTCTGGCATCTCATCCAGAAAGGAAGAAGCAGTTCAGTTTTTTGTTTCCACTCCTATTATCAAAAGATATGATGTGTTTTCCCTTGAGACTGCCGATGGTATATATGTTATCACTAGGGGTTTCATGAACGAGCACCGCACGCTGGAAAATGGTTTTACTCCTCAGATTTCAAAGAATTTTTTATATGGTTTTCCTCCAAACTGGGAAAGCTATGCTCTAGAATGCACCGGAGAAGGATCTGAAGCTGATATTGATTCGGCCAATGCTGTTCCGGATAGTGTATCTGCAATTTGTCAAGAAATCTTGTTTGATGGTGAGGAAAATTTCATTCCTACTTCGTTGGTGTTGCCTGACGAGGCCCTGGGAAAATGCAAGAAACCATTCGGGACAAAAGAATGCAAAGCCTCAAAGGAGATGAGTGGGGTTGATGTTACTTATGGTAGTGGCGAAAATAGACATGGTACCAGGTTACGTGCTATTAATGTTTGTCAGCGGAAGCAGCAGCCTGCATCTGGAGGTCATCGTAGGCATCCAAATAAAAAACAGAGCTCTACCTCAACAGAAGTGGAAACTCGTGATTCGGATACTGCTATATCTGAAAATGTATCAGTAAATCATCCAGAAATATCATCTGATGCTGTAGAGAAGTCTTTTCCTACTTATTTGGTATCACCGGATAAGACCACGGGAGATTGCAATAAGGCATTCCTCGAAGATGAACGGGACATGTCAATTAAGACGGGTGAGGTCAATGTTGTTCATGGTGGTGGCAGGAATAGACGTAGTGCCCGGTTGCATAATGTTAAACTCTGCCAGAAGAAACAGCCTGTTACCGGAGATCCGGCAACACATCCAGATAAAGACCAGATCTCCACCTTACCAGCCTTGGAAAAGAGTGATGGAGGACTGGAAAGTCTTATGACACCCATTCAGTCACAAAAGGGAATAGTAAACACATTGTCTGGGCAGGTTACTAATAAATTCAGATCCAGAATTCCCAAAACTTTTTCAGCGAAGACTGGAGGTTGTTATAAGAGAAAAAGGGTGACAGTTGAAACAGAAGCAGTTGGACCTAAGAGAAAAAATATTAAACCCGCATCTTCTGTAAAATCTCCACAAGGAAGGGATACAAGTCACTCGAACAAGGGAAGCACACAGAGATTGTCCTCTGTTTCTCCAGAGTCATTGGGTCTCAAAAAATCAAGATCTGGAAGGTGGCTTCTACCTCGCTTAGAGTTTTGGCGCAATCAAACACCTATTTATAATATGGACCGCGAGATTATAGAAATTCAGGAAGGCTAG

Protein sequence

>Msa0091710

MVDSTPPTATISSNGTPTSSSFRRTVTLYDWWLVKSSQGNRLAISGISSRKEEAVQFFVSTPIIKRYDVFSLETADGIYVITRGFMNEHRTLENGFTPQISKNFLYGFPPNWESYALECTGEGSEADIDSANAVPDSVSAICQEILFDGEENFIPTSLVLPDEALGKCKKPFGTKECKASKEMSGVDVTYGSGENRHGTRLRAINVCQRKQQPASGGHRRHPNKKQSSTSTEVETRDSDTAISENVSVNHPEISSDAVEKSFPTYLVSPDKTTGDCNKAFLEDERDMSIKTGEVNVVHGGGRNRRSARLHNVKLCQKKQPVTGDPATHPDKDQISTLPALEKSDGGLESLMTPIQSQKGIVNTLSGQVTNKFRSRIPKTFSAKTGGCYKRKRVTVETEAVGPKRKNIKPASSVKSPQGRDTSHSNKGSTQRLSSVSPESLGLKKSRSGRWLLPRLEFWRNQTPIYNMDREIIEIQEG*