Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122040 | XP_013468353.1 | 80.186 | 429 | 42 | 4 | 1 | 387 | 1 | 428 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122040 | sp|F4KCE9|KNL2_ARATH | 36.923 | 130 | 61 | 4 | 21 | 131 | 14 | 141 | 1.92e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122040 | A0A072VWG5 | 80.186 | 429 | 42 | 4 | 1 | 387 | 1 | 428 | 0.0 | 663 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0122040 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0122040 | 0.801449 | 8.958522e-49 | -8.615850e-47 |
| Msa0026800 | Msa0122040 | 0.857250 | 1.854456e-62 | -8.615850e-47 |
| Msa0028640 | Msa0122040 | 0.803566 | 3.279889e-49 | -8.615850e-47 |
| Msa0032430 | Msa0122040 | 0.806629 | 7.497954e-50 | -8.615850e-47 |
| Msa0036870 | Msa0122040 | 0.815089 | 1.105313e-51 | -8.615850e-47 |
| Msa0047030 | Msa0122040 | 0.805218 | 1.484497e-49 | -8.615850e-47 |
| Msa0052260 | Msa0122040 | 0.811084 | 8.355404e-51 | -8.615850e-47 |
| Msa0090400 | Msa0122040 | 0.805355 | 1.389380e-49 | -8.615850e-47 |
| Msa0091710 | Msa0122040 | 0.811794 | 5.858202e-51 | -8.615850e-47 |
| Msa0122040 | Msa0122510 | 0.880038 | 7.627120e-70 | -8.615850e-47 |
| Msa0122040 | Msa0124060 | 0.801323 | 9.506844e-49 | -8.615850e-47 |
| Msa0122040 | Msa0157290 | 0.801590 | 8.379920e-49 | -8.615850e-47 |
| Msa0122040 | Msa0167010 | 0.847137 | 1.398956e-59 | -8.615850e-47 |
| Msa0122040 | Msa0168500 | 0.800106 | 1.683601e-48 | -8.615850e-47 |
| Msa0122040 | Msa0172070 | 0.800517 | 1.388640e-48 | -8.615850e-47 |
| Msa0122040 | Msa0178560 | 0.802200 | 6.281584e-49 | -8.615850e-47 |
| Msa0122040 | Msa0230740 | 0.802827 | 4.662851e-49 | -8.615850e-47 |
| Msa0122040 | Msa0363070 | 0.802942 | 4.414443e-49 | -8.615850e-47 |
| Msa0122040 | Msa0386090 | 0.800733 | 1.254567e-48 | -8.615850e-47 |
| Msa0122040 | Msa0428150 | 0.806465 | 8.118985e-50 | -8.615850e-47 |
| Msa0122040 | Msa0462500 | 0.804950 | 1.688725e-49 | -8.615850e-47 |
| Msa0122040 | Msa0467490 | 0.815500 | 8.954300e-52 | -8.615850e-47 |
| Msa0122040 | Msa0474520 | 0.800973 | 1.121149e-48 | -8.615850e-47 |
| Msa0122040 | Msa0520890 | 0.805057 | 1.603907e-49 | -8.615850e-47 |
| Msa0122040 | Msa0663390 | 0.804255 | 2.358560e-49 | -8.615850e-47 |
| Msa0122040 | Msa0890320 | 0.811522 | 6.713227e-51 | -8.615850e-47 |
| Msa0122040 | Msa0945110 | 0.810135 | 1.339563e-50 | -8.615850e-47 |
| Msa0122040 | Msa0979730 | 0.815655 | 8.272953e-52 | -8.615850e-47 |
| Msa0122040 | Msa1020560 | 0.811036 | 8.558521e-51 | -8.615850e-47 |
| Msa0122040 | Msa1084960 | 0.811694 | 6.160407e-51 | -8.615850e-47 |
| Msa0122040 | Msa1097980 | 0.809305 | 2.021025e-50 | -8.615850e-47 |
| Msa0122040 | Msa1111090 | 0.802188 | 6.314842e-49 | -8.615850e-47 |
| Msa0122040 | Msa1209460 | 0.805290 | 1.433403e-49 | -8.615850e-47 |
| Msa0122040 | Msa1330410 | 0.810334 | 1.213813e-50 | -8.615850e-47 |
| Msa0122040 | Msa1372230 | 0.808495 | 3.011515e-50 | -8.615850e-47 |
| Msa0122040 | Msa1454140 | 0.807629 | 4.604073e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122040 | MtrunA17_Chr1g0182611 | 80.186 | 429 | 42 | 4 | 1 | 387 | 1 | 428 | 0.0 | 663 |
| Msa0122040 | MtrunA17_Chr1g0182621 | 50.621 | 322 | 116 | 7 | 22 | 305 | 26 | 342 | 7.40e-90 | 283 |
| Msa0122040 | MtrunA17_Chr1g0182621 | 55.518 | 299 | 95 | 5 | 114 | 387 | 246 | 531 | 4.03e-84 | 268 |
| Msa0122040 | MtrunA17_Chr7g0231611 | 34.783 | 138 | 69 | 6 | 1 | 122 | 1 | 133 | 9.67e-14 | 72.0 |
| Msa0122040 | MtrunA17_Chr5g0416851 | 34.783 | 138 | 69 | 6 | 1 | 122 | 1 | 133 | 1.04e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122040 | AT5G02520.1 | 36.923 | 130 | 61 | 4 | 21 | 131 | 14 | 141 | 1.95e-22 | 100 |
| Msa0122040 | AT5G02520.3 | 36.923 | 130 | 61 | 4 | 21 | 131 | 14 | 141 | 2.54e-22 | 99.8 |
| Msa0122040 | AT5G02520.2 | 37.405 | 131 | 60 | 5 | 21 | 131 | 14 | 142 | 1.37e-21 | 97.4 |
| Msa0122040 | AT1G58210.1 | 37.778 | 90 | 43 | 1 | 24 | 100 | 64 | 153 | 8.11e-13 | 68.9 |
Find 123 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATGATATTTC+TGG | 0.152483 | 1_3:+48391928 | None:intergenic |
| TTCTACCTCGCTTAGAGTTT+TGG | 0.216024 | 1_3:-48391012 | Msa0122040:exon |
| CTCTGTTTCTCCAGAGTCAT+TGG | 0.218790 | 1_3:-48391268 | Msa0122040:CDS |
| GATTAACAGGGCAGAGATTT+AGG | 0.252160 | 1_3:-48390432 | Msa0122040:three_prime_UTR |
| ACAAATGGTTTATGATTAAC+AGG | 0.260783 | 1_3:-48390445 | Msa0122040:three_prime_UTR |
| TGCAAGAGAGATAATTAATT+AGG | 0.263678 | 1_3:-48390487 | Msa0122040:three_prime_UTR |
| TCAAACACCTATTTATAATA+TGG | 0.307116 | 1_3:-48390984 | Msa0122040:intron |
| GAGGTTGTTATAAGAGAAAA+AGG | 0.309998 | 1_3:-48391412 | Msa0122040:CDS |
| TGTCAAGAAATCTTGTTTGA+TGG | 0.311615 | 1_3:-48392367 | Msa0122040:intron |
| CGGAAGCAGCAGCCTGCATC+TGG | 0.314800 | 1_3:-48392054 | Msa0122040:CDS |
| TAGAGGCTCTTCACCATCAT+TGG | 0.318246 | 1_3:-48390735 | Msa0122040:three_prime_UTR |
| TCACATACCATATTATAAAT+AGG | 0.323614 | 1_3:+48390977 | None:intergenic |
| TCTTTATCTGGATGTGTTGC+CGG | 0.325220 | 1_3:+48391593 | None:intergenic |
| CCGCGAGATTATAGAAATTC+AGG | 0.330860 | 1_3:-48390783 | Msa0122040:three_prime_UTR |
| TGATTCGGCCAATGCTATTC+CGG | 0.331513 | 1_3:-48392407 | Msa0122040:CDS |
| GAGCAGCGCACGCTGGAAAA+TGG | 0.336004 | 1_3:-48392672 | Msa0122040:CDS |
| AGAGCATAGCTTTCCCAGTT+TGG | 0.337878 | 1_3:+48392463 | None:intergenic |
| GGAATAGTAAACACATTGTC+TGG | 0.341105 | 1_3:-48391491 | Msa0122040:CDS |
| GTGGAGATCTGGTCTTTATC+TGG | 0.363337 | 1_3:+48391581 | None:intergenic |
| AGTGGGGTTGATGTTACTTA+TGG | 0.365193 | 1_3:-48392129 | Msa0122040:CDS |
| TCATAAACCATTTGTATGTT+CGG | 0.368277 | 1_3:+48390453 | None:intergenic |
| GATGGTGAAGAGCCTCTAAA+AGG | 0.383621 | 1_3:+48390740 | None:intergenic |
| AGAGGCTCTTCACCATCATT+GGG | 0.392278 | 1_3:-48390734 | Msa0122040:three_prime_UTR |
| GCAAGAGAGATAATTAATTA+GGG | 0.398779 | 1_3:-48390486 | Msa0122040:three_prime_UTR |
| CAGAAGAAACAGCCTGTTAC+CGG | 0.399407 | 1_3:-48391620 | Msa0122040:CDS |
| AACCCCACTCATCTCCTTTG+AGG | 0.416310 | 1_3:+48392143 | None:intergenic |
| GGTGTTGCCTGACGAGGCCC+TGG | 0.428575 | 1_3:-48392205 | Msa0122040:CDS |
| GGGCAGAGATTTAGGCATAA+TGG | 0.434677 | 1_3:-48390424 | Msa0122040:three_prime_UTR |
| TCTGTTTCTCCAGAGTCATT+GGG | 0.438436 | 1_3:-48391267 | Msa0122040:CDS |
| CAATCTCCCGTGGTCTTATC+CGG | 0.440181 | 1_3:+48391763 | None:intergenic |
| TCCTACTTCTTTGGTATCAC+CGG | 0.443039 | 1_3:-48391782 | Msa0122040:CDS |
| TCTAGGTTACTTTATACGAT+TGG | 0.451256 | 1_3:-48393881 | Msa0122040:intron |
| TTCTTGTAGTTTCCGACGAA+CGG | 0.452239 | 1_3:-48393986 | Msa0122040:intron |
| GACACCCATTCAGTCACAAA+AGG | 0.454994 | 1_3:-48391513 | Msa0122040:CDS |
| GTTGCCGGATCTCCGGTAAC+AGG | 0.455494 | 1_3:+48391608 | None:intergenic |
| AGGCTGGTAAGGTGGAGATC+TGG | 0.472582 | 1_3:+48391570 | None:intergenic |
| GGAGATGTGAGTAGGTAGCT+AGG | 0.475346 | 1_3:-48390403 | Msa0122040:three_prime_UTR |
| GATCTCCACCTTACCAGCCT+TGG | 0.478185 | 1_3:-48391567 | Msa0122040:CDS |
| ACAGCCTGTTACCGGAGATC+CGG | 0.478659 | 1_3:-48391612 | Msa0122040:CDS |
| GACCACGGGAGATTGCAATA+AGG | 0.479142 | 1_3:-48391755 | Msa0122040:CDS |
| TGGATGTGTTGCCGGATCTC+CGG | 0.481700 | 1_3:+48391601 | None:intergenic |
| AGGTTACTTTATACGATTGG+TGG | 0.484584 | 1_3:-48393878 | Msa0122040:CDS |
| ATCTGAAGCTGATATTGATT+CGG | 0.486466 | 1_3:-48392422 | Msa0122040:CDS |
| ATTACAACCGAACATACAAA+TGG | 0.492525 | 1_3:-48390460 | Msa0122040:three_prime_UTR |
| CATTCTCGAAGAAGATGAAC+GGG | 0.497490 | 1_3:-48391732 | Msa0122040:CDS |
| AATATATACCAGCCCAATGA+TGG | 0.497740 | 1_3:+48390722 | None:intergenic |
| GCTCTAGAATGCACCGGAGA+AGG | 0.500619 | 1_3:-48392445 | Msa0122040:CDS |
| AAATTTCATTCCTACTTCGT+TGG | 0.500725 | 1_3:-48392226 | Msa0122040:CDS |
| GAACAAAACACAAGATAGAA+AGG | 0.502201 | 1_3:+48390321 | None:intergenic |
| GAAGAAATGGTTGCAGTTGG+AGG | 0.503417 | 1_3:+48394024 | None:intergenic |
| GGAAACCGTTTAGCCATCTC+TGG | 0.503556 | 1_3:-48393837 | Msa0122040:CDS |
| AAGTGCAACATCACTCTCAA+TGG | 0.503646 | 1_3:-48394058 | None:intergenic |
| AGAAGTGGAAACTCGTGATT+CGG | 0.511753 | 1_3:-48391986 | Msa0122040:CDS |
| CTGTAAAATCTCCACAAGGA+AGG | 0.520970 | 1_3:-48391331 | Msa0122040:CDS |
| TTGGAAGAAATGGTTGCAGT+TGG | 0.521784 | 1_3:+48394021 | None:intergenic |
| TGGTATATATGTTATCACTA+GGG | 0.526872 | 1_3:-48392706 | Msa0122040:CDS |
| CTACGATGACCTCCAGATGC+AGG | 0.528905 | 1_3:+48392042 | None:intergenic |
| ACACCCATTCAGTCACAAAA+GGG | 0.532185 | 1_3:-48391512 | Msa0122040:CDS |
| GTTGATGTTACTTATGGTAG+TGG | 0.532246 | 1_3:-48392123 | Msa0122040:CDS |
| AATGGTTGCAGTTGGAGGAG+TGG | 0.532867 | 1_3:+48394029 | None:intergenic |
| GGAAAATGCAAGAAACCATT+CGG | 0.536222 | 1_3:-48392183 | Msa0122040:CDS |
| AGATGCCAGAGATGGCTAAA+CGG | 0.536792 | 1_3:+48393832 | None:intergenic |
| AAAAGAATGCAAAGCCTCAA+AGG | 0.537351 | 1_3:-48392157 | Msa0122040:CDS |
| TGTAAAATCTCCACAAGGAA+GGG | 0.537405 | 1_3:-48391330 | Msa0122040:CDS |
| CAAATTGCAGATACACTATC+CGG | 0.539970 | 1_3:+48392388 | None:intergenic |
| TACACTATCCGGAATAGCAT+TGG | 0.541623 | 1_3:+48392399 | None:intergenic |
| AACATTAATAGCACGTAACC+TGG | 0.544388 | 1_3:+48392083 | None:intergenic |
| ATATACCATCGGCAGTCTCA+AGG | 0.545294 | 1_3:+48392721 | None:intergenic |
| GAGCTCTACCTCAACAGAAG+TGG | 0.545818 | 1_3:-48392001 | Msa0122040:CDS |
| AGTAAACACATTGTCTGGGC+AGG | 0.549663 | 1_3:-48391486 | Msa0122040:CDS |
| TTCGTTGGTGTTGCCTGACG+AGG | 0.551013 | 1_3:-48392211 | Msa0122040:CDS |
| GCTCTTCACCATCATTGGGC+TGG | 0.552717 | 1_3:-48390730 | Msa0122040:intron |
| ATCAGCTTCAGATCCTTCTC+CGG | 0.554639 | 1_3:+48392432 | None:intergenic |
| ATGGTATATATGTTATCACT+AGG | 0.556691 | 1_3:-48392707 | Msa0122040:CDS |
| ACTGCAACCATTTCTTCCAA+TGG | 0.556744 | 1_3:-48394018 | Msa0122040:CDS |
| TCGTCGGAAACTACAAGAAG+TGG | 0.558977 | 1_3:+48393990 | None:intergenic |
| GCGAAAATAGACATGGTACC+AGG | 0.560344 | 1_3:-48392101 | Msa0122040:CDS |
| AAGCCTCAAAGGAGATGAGT+GGG | 0.564158 | 1_3:-48392146 | Msa0122040:CDS |
| GCATAGCTTTCCCAGTTTGG+AGG | 0.565501 | 1_3:+48392466 | None:intergenic |
| AAGCAGCAGCCTGCATCTGG+AGG | 0.566088 | 1_3:-48392051 | Msa0122040:CDS |
| TCAGGCAACACCAACGAAGT+AGG | 0.568738 | 1_3:+48392216 | None:intergenic |
| GGCATAATGGAGATGTGAGT+AGG | 0.571720 | 1_3:-48390411 | Msa0122040:three_prime_UTR |
| GGAAAAGAGTGATGGAGGAC+TGG | 0.572017 | 1_3:-48391546 | Msa0122040:CDS |
| TCCGGTGATACCAAAGAAGT+AGG | 0.573504 | 1_3:+48391781 | None:intergenic |
| ACGAGTTTCCACTTCTGTTG+AGG | 0.577453 | 1_3:+48391993 | None:intergenic |
| CATGAACGAGCAGCGCACGC+TGG | 0.579334 | 1_3:-48392679 | Msa0122040:CDS |
| GGTATATATGTTATCACTAG+GGG | 0.588021 | 1_3:-48392705 | Msa0122040:CDS |
| CATCCAGAAATATCATCTGA+TGG | 0.590199 | 1_3:-48391931 | Msa0122040:intron |
| AGCTATGCTCTAGAATGCAC+CGG | 0.591217 | 1_3:-48392451 | Msa0122040:CDS |
| ACGGGACATGTCAATTAAGA+CGG | 0.591957 | 1_3:-48391714 | Msa0122040:CDS |
| CGGGACATGTCAATTAAGAC+GGG | 0.595490 | 1_3:-48391713 | Msa0122040:intron |
| CGTCGGAAACTACAAGAAGT+GGG | 0.597461 | 1_3:+48393991 | None:intergenic |
| TGACTTGTATCCCTTCCTTG+TGG | 0.599408 | 1_3:+48391320 | None:intergenic |
| TCTGGAAGAGATGCCAGAGA+TGG | 0.599841 | 1_3:+48393824 | None:intergenic |
| CCTGAATTTCTATAATCTCG+CGG | 0.600251 | 1_3:+48390783 | None:intergenic |
| GTGAGTAAACAACCGTTCGT+CGG | 0.603870 | 1_3:+48393974 | None:intergenic |
| TATACCATCGGCAGTCTCAA+GGG | 0.605137 | 1_3:+48392722 | None:intergenic |
| GAATAGTAAACACATTGTCT+GGG | 0.607705 | 1_3:-48391490 | Msa0122040:CDS |
| CCAGCCTTGGAAAAGAGTGA+TGG | 0.608271 | 1_3:-48391554 | Msa0122040:CDS |
| ACAGTTGAAACAGAAGCAGT+TGG | 0.619629 | 1_3:-48391386 | Msa0122040:CDS |
| CTGCATCTGGAGGTCATCGT+AGG | 0.620919 | 1_3:-48392041 | Msa0122040:CDS |
| GCCTTGGAAAAGAGTGATGG+AGG | 0.621071 | 1_3:-48391551 | Msa0122040:CDS |
| TGCCTTATTGCAATCTCCCG+TGG | 0.621287 | 1_3:+48391753 | None:intergenic |
| AGTGATAACATATATACCAT+CGG | 0.622033 | 1_3:+48392710 | None:intergenic |
| GCATTCTCGAAGAAGATGAA+CGG | 0.623628 | 1_3:-48391733 | Msa0122040:CDS |
| GTATCACCGGATAAGACCAC+GGG | 0.626364 | 1_3:-48391769 | Msa0122040:CDS |
| TGAACAGCAAGGATCTGCAA+TGG | 0.630789 | 1_3:+48390355 | None:intergenic |
| GGATACAAGTCACTCGAACA+AGG | 0.634143 | 1_3:-48391309 | Msa0122040:CDS |
| GTGTTGCCTGACGAGGCCCT+GGG | 0.635492 | 1_3:-48392204 | Msa0122040:CDS |
| TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1_3:-48393858 | Msa0122040:CDS |
| GTCGGAAACTACAAGAAGTG+GGG | 0.648342 | 1_3:+48393992 | None:intergenic |
| AAAGCCTCAAAGGAGATGAG+TGG | 0.652543 | 1_3:-48392147 | Msa0122040:CDS |
| AAAAGAGAGACTGAACAGCA+AGG | 0.661526 | 1_3:+48390344 | None:intergenic |
| CAATGACTCTGGAGAAACAG+AGG | 0.661940 | 1_3:+48391269 | None:intergenic |
| GTGCTATTAATGTTTGTCAG+CGG | 0.670687 | 1_3:-48392074 | Msa0122040:CDS |
| GGTATCACCGGATAAGACCA+CGG | 0.680385 | 1_3:-48391770 | Msa0122040:CDS |
| TCGGAAACTACAAGAAGTGG+GGG | 0.686416 | 1_3:+48393993 | None:intergenic |
| GAGATTATAGAAATTCAGGA+AGG | 0.686775 | 1_3:-48390779 | Msa0122040:three_prime_UTR |
| CAAATGGTTTATGATTAACA+GGG | 0.687978 | 1_3:-48390444 | Msa0122040:three_prime_UTR |
| TCTTCTGTAAAATCTCCACA+AGG | 0.702540 | 1_3:-48391335 | Msa0122040:CDS |
| GGTAGTGGCGAAAATAGACA+TGG | 0.702887 | 1_3:-48392108 | Msa0122040:CDS |
| TTGCGCCAAAACTCTAAGCG+AGG | 0.703796 | 1_3:+48391007 | None:intergenic |
| AGCCTCAAAGGAGATGAGTG+GGG | 0.721063 | 1_3:-48392145 | Msa0122040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAATATTTGTAGA+AGG | + | chr1_3:48390999-48391018 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAATTTGCA+AGG | + | chr1_3:48391028-48391047 | None:intergenic | 10.0% |
| !! | ATTATTAAAACAAAACAATA+AGG | + | chr1_3:48391060-48391079 | None:intergenic | 10.0% |
| !!! | ATTTCAAAGAATTTTTTATA+TGG | - | chr1_3:48391857-48391876 | Msa0122040:intron | 10.0% |
| !!! | TAAAATTATCATTTTTGAGT+CGG | - | chr1_3:48390780-48390799 | Msa0122040:three_prime_UTR | 15.0% |
| !! | AATAAATCCTAGATATAAAA+TGG | + | chr1_3:48393458-48393477 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTAGATGAAAACT+TGG | - | chr1_3:48390699-48390718 | Msa0122040:intron | 20.0% |
| !! | AAAAAGAAAAATTGTTAAGC+AGG | + | chr1_3:48390896-48390915 | None:intergenic | 20.0% |
| !! | ATACTTTATGTTGTAAATCA+GGG | - | chr1_3:48391550-48391569 | Msa0122040:CDS | 20.0% |
| !!! | GGTTTAATATTTTTTCTCTT+AGG | + | chr1_3:48392991-48393010 | None:intergenic | 20.0% |
| !! | ATATACAAAAATGCTAACAA+TGG | + | chr1_3:48393252-48393271 | None:intergenic | 20.0% |
| !!! | ATTGTTAGCATTTTTGTATA+TGG | - | chr1_3:48393251-48393270 | Msa0122040:intron | 20.0% |
| !! | TCAAACACCTATTTATAATA+TGG | - | chr1_3:48393366-48393385 | Msa0122040:intron | 20.0% |
| !! | TCACATACCATATTATAAAT+AGG | + | chr1_3:48393376-48393395 | None:intergenic | 20.0% |
| !! | ATGCATATGATATCTAATAA+TGG | + | chr1_3:48393434-48393453 | None:intergenic | 20.0% |
| !!! | TAGGATTTATTTTCTCTTTA+AGG | - | chr1_3:48393467-48393486 | Msa0122040:intron | 20.0% |
| !!! | ATTTATTTTCTCTTTAAGGT+GGG | - | chr1_3:48393471-48393490 | Msa0122040:intron | 20.0% |
| !!! | ACAATCTATAATCTTTTAAC+TGG | - | chr1_3:48393518-48393537 | Msa0122040:intron | 20.0% |
| ! | TGATAGAGATAAGAATAAGA+AGG | + | chr1_3:48390420-48390439 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTTTTCCTTTCT+AGG | - | chr1_3:48390452-48390471 | Msa0122040:three_prime_UTR | 25.0% |
| !!! | TTTTTTACCATGTTTGACAA+TGG | - | chr1_3:48390912-48390931 | Msa0122040:intron | 25.0% |
| !! | TATTTTACCATTGTCAAACA+TGG | + | chr1_3:48390922-48390941 | None:intergenic | 25.0% |
| ! | ATAAAGCTTCAATATGCAAA+CGG | - | chr1_3:48390939-48390958 | Msa0122040:intron | 25.0% |
| ! | AGGACTAAAATGAATATTAG+AGG | - | chr1_3:48391131-48391150 | Msa0122040:intron | 25.0% |
| ! | GGACTAAAATGAATATTAGA+GGG | - | chr1_3:48391132-48391151 | Msa0122040:intron | 25.0% |
| ! | AAATCTGTTCATATTGAAGT+TGG | + | chr1_3:48391159-48391178 | None:intergenic | 25.0% |
| ! | ACTAGCATTTATACATGAAA+AGG | + | chr1_3:48391439-48391458 | None:intergenic | 25.0% |
| ! | CATACTTTATGTTGTAAATC+AGG | - | chr1_3:48391549-48391568 | Msa0122040:CDS | 25.0% |
| !! | ACACATCATATCTTGATAAT+AGG | + | chr1_3:48391605-48391624 | None:intergenic | 25.0% |
| ! | AGTGATAACATATATACCAT+CGG | + | chr1_3:48391643-48391662 | None:intergenic | 25.0% |
| ! | ATGGTATATATGTTATCACT+AGG | - | chr1_3:48391643-48391662 | Msa0122040:intron | 25.0% |
| ! | TGGTATATATGTTATCACTA+GGG | - | chr1_3:48391644-48391663 | Msa0122040:intron | 25.0% |
| ! | AAACTCAACGTCATAAAATA+AGG | + | chr1_3:48391787-48391806 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTGCCTACTTTA+TGG | - | chr1_3:48391830-48391849 | Msa0122040:intron | 25.0% |
| ! | TTGAAATCTAACCATAAAGT+AGG | + | chr1_3:48391844-48391863 | None:intergenic | 25.0% |
| !!! | TTGTTTGATGGTAAGTATTT+TGG | - | chr1_3:48391995-48392014 | Msa0122040:CDS | 25.0% |
| ! | AAAGTTTAACATTATGCAAC+CGG | + | chr1_3:48392708-48392727 | None:intergenic | 25.0% |
| ! | AGGTTGTTATAAGAGAAAAA+GGG | - | chr1_3:48392939-48392958 | Msa0122040:intron | 25.0% |
| ! | AAAGAATAGAGTGAAGTAAA+TGG | + | chr1_3:48393289-48393308 | None:intergenic | 25.0% |
| ! | TTCACTCTATTCTTTATGTT+TGG | - | chr1_3:48393294-48393313 | Msa0122040:intron | 25.0% |
| ! | TCACTCTATTCTTTATGTTT+GGG | - | chr1_3:48393295-48393314 | Msa0122040:intron | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1_3:48393307-48393326 | Msa0122040:intron | 25.0% |
| !! | ATGCATACCATTTTATATCT+AGG | - | chr1_3:48393448-48393467 | Msa0122040:intron | 25.0% |
| !!! | GATTTATTTTCTCTTTAAGG+TGG | - | chr1_3:48393470-48393489 | Msa0122040:intron | 25.0% |
| !! | TCTTTTATATCACCTTTTAG+AGG | - | chr1_3:48393598-48393617 | Msa0122040:intron | 25.0% |
| !! | TTTTTATCAGAACTATCATG+TGG | - | chr1_3:48393682-48393701 | Msa0122040:intron | 25.0% |
| !!! | TTTTTTACAGACATGTAACA+AGG | + | chr1_3:48393770-48393789 | None:intergenic | 25.0% |
| ! | TGCAAGAGAGATAATTAATT+AGG | - | chr1_3:48393863-48393882 | Msa0122040:CDS | 25.0% |
| ! | GCAAGAGAGATAATTAATTA+GGG | - | chr1_3:48393864-48393883 | Msa0122040:CDS | 25.0% |
| ! | TCATAAACCATTTGTATGTT+CGG | + | chr1_3:48393900-48393919 | None:intergenic | 25.0% |
| ! | ACAAATGGTTTATGATTAAC+AGG | - | chr1_3:48393905-48393924 | Msa0122040:intron | 25.0% |
| ! | CAAATGGTTTATGATTAACA+GGG | - | chr1_3:48393906-48393925 | Msa0122040:intron | 25.0% |
| AAAGTAACCTAGAAAGGAAA+AGG | + | chr1_3:48390462-48390481 | None:intergenic | 30.0% | |
| TCGTATAAAGTAACCTAGAA+AGG | + | chr1_3:48390468-48390487 | None:intergenic | 30.0% | |
| ! | TCTAGGTTACTTTATACGAT+TGG | - | chr1_3:48390469-48390488 | Msa0122040:three_prime_UTR | 30.0% |
| TAGCTCATGTCTAAATTGTT+AGG | - | chr1_3:48390604-48390623 | Msa0122040:intron | 30.0% | |
| AGGCAATTAAAGTGAATAAG+TGG | + | chr1_3:48390876-48390895 | None:intergenic | 30.0% | |
| ! | CAATATGAACAGATTTTGCA+AGG | - | chr1_3:48391163-48391182 | Msa0122040:intron | 30.0% |
| !! | AATTTAGCACCGTTTGATTT+TGG | + | chr1_3:48391210-48391229 | None:intergenic | 30.0% |
| CTCTCAATTACTATCATAAG+AGG | - | chr1_3:48391504-48391523 | Msa0122040:CDS | 30.0% | |
| ! | TCATATCTTGATAATAGGAG+TGG | + | chr1_3:48391600-48391619 | None:intergenic | 30.0% |
| GGTATATATGTTATCACTAG+GGG | - | chr1_3:48391645-48391664 | Msa0122040:intron | 30.0% | |
| ! | ATCTGAAGCTGATATTGATT+CGG | - | chr1_3:48391928-48391947 | Msa0122040:intron | 30.0% |
| ! | TGTCAAGAAATCTTGTTTGA+TGG | - | chr1_3:48391983-48392002 | Msa0122040:CDS | 30.0% |
| !! | GTCAAAACATTTCTAAGACA+TGG | + | chr1_3:48392044-48392063 | None:intergenic | 30.0% |
| !!! | TTGGTTTTAATTGTTGTTGC+AGG | - | chr1_3:48392095-48392114 | Msa0122040:CDS | 30.0% |
| AAATTTCATTCCTACTTCGT+TGG | - | chr1_3:48392124-48392143 | Msa0122040:CDS | 30.0% | |
| !!! | GTAGAGCTCTGTTTTTTATT+TGG | + | chr1_3:48392338-48392357 | None:intergenic | 30.0% |
| TTACCATCAGATGATATTTC+TGG | + | chr1_3:48392425-48392444 | None:intergenic | 30.0% | |
| AAGTTTAACATTATGCAACC+GGG | + | chr1_3:48392707-48392726 | None:intergenic | 30.0% | |
| GAATAGTAAACACATTGTCT+GGG | - | chr1_3:48392860-48392879 | Msa0122040:intron | 30.0% | |
| !!! | TGAAAAAGTTTTGGGAATTC+TGG | + | chr1_3:48392908-48392927 | None:intergenic | 30.0% |
| GAGGTTGTTATAAGAGAAAA+AGG | - | chr1_3:48392938-48392957 | Msa0122040:intron | 30.0% | |
| CTTCATGAATTGACAATGAT+TGG | + | chr1_3:48393138-48393157 | None:intergenic | 30.0% | |
| CAATCATTGTCAATTCATGA+AGG | - | chr1_3:48393136-48393155 | Msa0122040:intron | 30.0% | |
| AAAATGCTAACAATGGCATT+GGG | + | chr1_3:48393245-48393264 | None:intergenic | 30.0% | |
| AAAAATGCTAACAATGGCAT+TGG | + | chr1_3:48393246-48393265 | None:intergenic | 30.0% | |
| GAGATTATAGAAATTCAGGA+AGG | - | chr1_3:48393571-48393590 | Msa0122040:intron | 30.0% | |
| AAGGTTAGAGAGAATTAGTT+AGG | + | chr1_3:48393751-48393770 | None:intergenic | 30.0% | |
| ACATGTCTGTAAAAAATGAG+CGG | - | chr1_3:48393774-48393793 | Msa0122040:intron | 30.0% | |
| ATTACAACCGAACATACAAA+TGG | - | chr1_3:48393890-48393909 | Msa0122040:intron | 30.0% | |
| CTAGGTGTATGTAAGAAAAA+TGG | - | chr1_3:48393965-48393984 | Msa0122040:intron | 30.0% | |
| GAACAAAACACAAGATAGAA+AGG | + | chr1_3:48394032-48394051 | None:intergenic | 30.0% | |
| !! | TGTTTTGTTCTTGATTCTAG+AGG | - | chr1_3:48394042-48394061 | Msa0122040:CDS | 30.0% |
| ATAAGAAGGATGAGAGTGAA+GGG | + | chr1_3:48390406-48390425 | None:intergenic | 35.0% | |
| AATAAGAAGGATGAGAGTGA+AGG | + | chr1_3:48390407-48390426 | None:intergenic | 35.0% | |
| ! | AGGTTACTTTATACGATTGG+TGG | - | chr1_3:48390472-48390491 | Msa0122040:three_prime_UTR | 35.0% |
| AAGTGAAAACCCTTACTTTC+TGG | + | chr1_3:48390547-48390566 | None:intergenic | 35.0% | |
| GTTAGATGAAAACTTGGCTT+AGG | - | chr1_3:48390705-48390724 | Msa0122040:intron | 35.0% | |
| ACAATGCATTGCAATATGCA+GGG | - | chr1_3:48390826-48390845 | Msa0122040:intron | 35.0% | |
| AAGTGAATAAGTGGAGAATC+CGG | + | chr1_3:48390867-48390886 | None:intergenic | 35.0% | |
| GATTTGTGTCTCTCAAAAGA+AGG | - | chr1_3:48391111-48391130 | Msa0122040:intron | 35.0% | |
| ACTAACAGTTAGCAGTTTGT+TGG | - | chr1_3:48391358-48391377 | Msa0122040:CDS | 35.0% | |
| CACTTATTACAACAAACCTG+AGG | + | chr1_3:48391711-48391730 | None:intergenic | 35.0% | |
| ATAAGTGTCAATGTCTTTCG+TGG | - | chr1_3:48391724-48391743 | Msa0122040:CDS | 35.0% | |
| ! | TATATGGTTTTCCTCCAAAC+TGG | - | chr1_3:48391873-48391892 | Msa0122040:intron | 35.0% |
| ! | ATATGGTTTTCCTCCAAACT+GGG | - | chr1_3:48391874-48391893 | Msa0122040:intron | 35.0% |
| CAAATTGCAGATACACTATC+CGG | + | chr1_3:48391965-48391984 | None:intergenic | 35.0% | |
| AGTCTCGATATATAAGTCGT+TGG | - | chr1_3:48392076-48392095 | Msa0122040:CDS | 35.0% | |
| ! | TTTAATTGTTGTTGCAGGTG+AGG | - | chr1_3:48392100-48392119 | Msa0122040:CDS | 35.0% |
| GGAAAATGCAAGAAACCATT+CGG | - | chr1_3:48392167-48392186 | Msa0122040:CDS | 35.0% | |
| ! | TTGCATTCTTTTGTACCGAA+TGG | + | chr1_3:48392185-48392204 | None:intergenic | 35.0% |
| AAAAGAATGCAAAGCCTCAA+AGG | - | chr1_3:48392193-48392212 | Msa0122040:CDS | 35.0% | |
| ! | GTTGATGTTACTTATGGTAG+TGG | - | chr1_3:48392227-48392246 | Msa0122040:CDS | 35.0% |
| AACATTAATAGCACGTAACC+TGG | + | chr1_3:48392270-48392289 | None:intergenic | 35.0% | |
| ! | GTGCTATTAATGTTTGTCAG+CGG | - | chr1_3:48392276-48392295 | Msa0122040:intron | 35.0% |
| CATCCAGAAATATCATCTGA+TGG | - | chr1_3:48392419-48392438 | Msa0122040:CDS | 35.0% | |
| ! | GAAGTCTTTTCCTACTTCTT+TGG | - | chr1_3:48392559-48392578 | Msa0122040:intron | 35.0% |
| ! | ATTCCCTTTTGTGACTGAAT+GGG | + | chr1_3:48392844-48392863 | None:intergenic | 35.0% |
| ! | TATTCCCTTTTGTGACTGAA+TGG | + | chr1_3:48392845-48392864 | None:intergenic | 35.0% |
| GGAATAGTAAACACATTGTC+TGG | - | chr1_3:48392859-48392878 | Msa0122040:intron | 35.0% | |
| ! | GTCTTCGCTGAAAAAGTTTT+GGG | + | chr1_3:48392916-48392935 | None:intergenic | 35.0% |
| ! | AGTCTTCGCTGAAAAAGTTT+TGG | + | chr1_3:48392917-48392936 | None:intergenic | 35.0% |
| !!! | AAAACTTTTTCAGCGAAGAC+TGG | - | chr1_3:48392916-48392935 | Msa0122040:intron | 35.0% |
| ! | TGGAGATTTTACAGAAGATG+CGG | + | chr1_3:48393013-48393032 | None:intergenic | 35.0% |
| TCTTCTGTAAAATCTCCACA+AGG | - | chr1_3:48393015-48393034 | Msa0122040:intron | 35.0% | |
| TGTAAAATCTCCACAAGGAA+GGG | - | chr1_3:48393020-48393039 | Msa0122040:intron | 35.0% | |
| GGTCTCAAAAAATCAAGATC+TGG | - | chr1_3:48393104-48393123 | Msa0122040:intron | 35.0% | |
| CATGAATGACAATTCATGAG+AGG | + | chr1_3:48393205-48393224 | None:intergenic | 35.0% | |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1_3:48393311-48393330 | Msa0122040:intron | 35.0% |
| GATATCTAATAATGGCAGCT+GGG | + | chr1_3:48393426-48393445 | None:intergenic | 35.0% | |
| TGATATCTAATAATGGCAGC+TGG | + | chr1_3:48393427-48393446 | None:intergenic | 35.0% | |
| TAAGGTGGGTAAGATAAACA+AGG | - | chr1_3:48393485-48393504 | Msa0122040:intron | 35.0% | |
| AAGGTGGGTAAGATAAACAA+GGG | - | chr1_3:48393486-48393505 | Msa0122040:intron | 35.0% | |
| CCTGAATTTCTATAATCTCG+CGG | + | chr1_3:48393570-48393589 | None:intergenic | 35.0% | |
| AATATATACCAGCCCAATGA+TGG | + | chr1_3:48393631-48393650 | None:intergenic | 35.0% | |
| TTGGAAGAAATGGTTGCAGT+TGG | + | chr1_3:48390332-48390351 | None:intergenic | 40.0% | |
| ACTGCAACCATTTCTTCCAA+TGG | - | chr1_3:48390332-48390351 | Msa0122040:three_prime_UTR | 40.0% | |
| TTCTTGTAGTTTCCGACGAA+CGG | - | chr1_3:48390364-48390383 | Msa0122040:three_prime_UTR | 40.0% | |
| TAAGAAGGATGAGAGTGAAG+GGG | + | chr1_3:48390405-48390424 | None:intergenic | 40.0% | |
| TGGCTCGTTAAATCATCTCA+AGG | - | chr1_3:48390492-48390511 | Msa0122040:three_prime_UTR | 40.0% | |
| GCATCTCTTCCAGAAAGTAA+GGG | - | chr1_3:48390535-48390554 | Msa0122040:three_prime_UTR | 40.0% | |
| GTTAGGTTAGAGTTCCAACT+AGG | - | chr1_3:48390621-48390640 | Msa0122040:intron | 40.0% | |
| TGAGCATAACTCACTTGGTA+GGG | - | chr1_3:48390803-48390822 | Msa0122040:intron | 40.0% | |
| GACAATGCATTGCAATATGC+AGG | - | chr1_3:48390825-48390844 | Msa0122040:intron | 40.0% | |
| CAATGCATTGCAATATGCAG+GGG | - | chr1_3:48390827-48390846 | Msa0122040:intron | 40.0% | |
| AGTGAATAAGTGGAGAATCC+GGG | + | chr1_3:48390866-48390885 | None:intergenic | 40.0% | |
| CAAACTCTTGATATCTGCTG+CGG | + | chr1_3:48390968-48390987 | None:intergenic | 40.0% | |
| ! | CAAACGGTGCTAAATTTGCA+AGG | - | chr1_3:48391214-48391233 | Msa0122040:intron | 40.0% |
| TTGTGACACTTCAGCAGAAA+TGG | - | chr1_3:48391333-48391352 | Msa0122040:CDS | 40.0% | |
| !! | GGAAAATGGTTTTACTCCTC+AGG | - | chr1_3:48391692-48391711 | Msa0122040:intron | 40.0% |
| AGTTTGAGTGCTAACTGTGA+TGG | - | chr1_3:48391802-48391821 | Msa0122040:intron | 40.0% | |
| TACACTATCCGGAATAGCAT+TGG | + | chr1_3:48391954-48391973 | None:intergenic | 40.0% | |
| ! | TGGTTTCTTGCATTTTCCCA+GGG | + | chr1_3:48392165-48392184 | None:intergenic | 40.0% |
| ! | ATGGTTTCTTGCATTTTCCC+AGG | + | chr1_3:48392166-48392185 | None:intergenic | 40.0% |
| !! | AGTGGGGTTGATGTTACTTA+TGG | - | chr1_3:48392221-48392240 | Msa0122040:CDS | 40.0% |
| AGAAGTGGAAACTCGTGATT+CGG | - | chr1_3:48392364-48392383 | Msa0122040:intron | 40.0% | |
| TCCTACTTCTTTGGTATCAC+CGG | - | chr1_3:48392568-48392587 | Msa0122040:intron | 40.0% | |
| GCATTCTCGAAGAAGATGAA+CGG | - | chr1_3:48392617-48392636 | Msa0122040:intron | 40.0% | |
| CATTCTCGAAGAAGATGAAC+GGG | - | chr1_3:48392618-48392637 | Msa0122040:intron | 40.0% | |
| ACGGGACATGTCAATTAAGA+CGG | - | chr1_3:48392636-48392655 | Msa0122040:intron | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | - | chr1_3:48392664-48392683 | Msa0122040:CDS | 40.0% | |
| TCTTTATCTGGATGTGTTGC+CGG | + | chr1_3:48392760-48392779 | None:intergenic | 40.0% | |
| ACACCCATTCAGTCACAAAA+GGG | - | chr1_3:48392838-48392857 | Msa0122040:intron | 40.0% | |
| ACAGTTGAAACAGAAGCAGT+TGG | - | chr1_3:48392964-48392983 | Msa0122040:intron | 40.0% | |
| ! | GGAGATTTTACAGAAGATGC+GGG | + | chr1_3:48393012-48393031 | None:intergenic | 40.0% |
| CTGTAAAATCTCCACAAGGA+AGG | - | chr1_3:48393019-48393038 | Msa0122040:intron | 40.0% | |
| ! | TCTGTTTCTCCAGAGTCATT+GGG | - | chr1_3:48393083-48393102 | Msa0122040:intron | 40.0% |
| !!! | TTTTTGAGACCCAATGACTC+TGG | + | chr1_3:48393095-48393114 | None:intergenic | 40.0% |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1_3:48393314-48393333 | Msa0122040:intron | 40.0% |
| ! | TTCTACCTCGCTTAGAGTTT+TGG | - | chr1_3:48393338-48393357 | Msa0122040:intron | 40.0% |
| ! | CTTTTTACATTTGACCACCC+AGG | - | chr1_3:48393543-48393562 | Msa0122040:intron | 40.0% |
| CCGCGAGATTATAGAAATTC+AGG | - | chr1_3:48393567-48393586 | Msa0122040:intron | 40.0% | |
| GATTAACAGGGCAGAGATTT+AGG | - | chr1_3:48393918-48393937 | Msa0122040:intron | 40.0% | |
| AAAAGAGAGACTGAACAGCA+AGG | + | chr1_3:48394009-48394028 | None:intergenic | 40.0% | |
| GAAGAAATGGTTGCAGTTGG+AGG | + | chr1_3:48390329-48390348 | None:intergenic | 45.0% | |
| TCGGAAACTACAAGAAGTGG+GGG | + | chr1_3:48390360-48390379 | None:intergenic | 45.0% | |
| GTCGGAAACTACAAGAAGTG+GGG | + | chr1_3:48390361-48390380 | None:intergenic | 45.0% | |
| CGTCGGAAACTACAAGAAGT+GGG | + | chr1_3:48390362-48390381 | None:intergenic | 45.0% | |
| TCGTCGGAAACTACAAGAAG+TGG | + | chr1_3:48390363-48390382 | None:intergenic | 45.0% | |
| GTGAGTAAACAACCGTTCGT+CGG | + | chr1_3:48390379-48390398 | None:intergenic | 45.0% | |
| AGATGCCAGAGATGGCTAAA+CGG | + | chr1_3:48390521-48390540 | None:intergenic | 45.0% | |
| GGCATCTCTTCCAGAAAGTA+AGG | - | chr1_3:48390534-48390553 | Msa0122040:three_prime_UTR | 45.0% | |
| GTGAGCATAACTCACTTGGT+AGG | - | chr1_3:48390802-48390821 | Msa0122040:intron | 45.0% | |
| GTGAATAAGTGGAGAATCCG+GGG | + | chr1_3:48390865-48390884 | None:intergenic | 45.0% | |
| CGCCAAGTGCCAAAATCAAA+CGG | - | chr1_3:48391198-48391217 | Msa0122040:intron | 45.0% | |
| !! | CACCGTTTGATTTTGGCACT+TGG | + | chr1_3:48391203-48391222 | None:intergenic | 45.0% |
| TGCTGAGTTAGTGGTGACAA+GGG | + | chr1_3:48391313-48391332 | None:intergenic | 45.0% | |
| ATGCTGAGTTAGTGGTGACA+AGG | + | chr1_3:48391314-48391333 | None:intergenic | 45.0% | |
| GTGTCACAATGCTGAGTTAG+TGG | + | chr1_3:48391322-48391341 | None:intergenic | 45.0% | |
| TATACCATCGGCAGTCTCAA+GGG | + | chr1_3:48391631-48391650 | None:intergenic | 45.0% | |
| ATATACCATCGGCAGTCTCA+AGG | + | chr1_3:48391632-48391651 | None:intergenic | 45.0% | |
| GTGTCAATGTCTTTCGTGGT+TGG | - | chr1_3:48391728-48391747 | Msa0122040:CDS | 45.0% | |
| AGAGCATAGCTTTCCCAGTT+TGG | + | chr1_3:48391890-48391909 | None:intergenic | 45.0% | |
| !! | AGCTATGCTCTAGAATGCAC+CGG | - | chr1_3:48391899-48391918 | Msa0122040:intron | 45.0% |
| ATCAGCTTCAGATCCTTCTC+CGG | + | chr1_3:48391921-48391940 | None:intergenic | 45.0% | |
| ! | TGATTCGGCCAATGCTATTC+CGG | - | chr1_3:48391943-48391962 | Msa0122040:CDS | 45.0% |
| AAAGCCTCAAAGGAGATGAG+TGG | - | chr1_3:48392203-48392222 | Msa0122040:CDS | 45.0% | |
| AAGCCTCAAAGGAGATGAGT+GGG | - | chr1_3:48392204-48392223 | Msa0122040:CDS | 45.0% | |
| ! | GGTAGTGGCGAAAATAGACA+TGG | - | chr1_3:48392242-48392261 | Msa0122040:intron | 45.0% |
| GCGAAAATAGACATGGTACC+AGG | - | chr1_3:48392249-48392268 | Msa0122040:intron | 45.0% | |
| ACGAGTTTCCACTTCTGTTG+AGG | + | chr1_3:48392360-48392379 | None:intergenic | 45.0% | |
| TCCGGTGATACCAAAGAAGT+AGG | + | chr1_3:48392572-48392591 | None:intergenic | 45.0% | |
| CGGGACATGTCAATTAAGAC+GGG | - | chr1_3:48392637-48392656 | Msa0122040:intron | 45.0% | |
| CATGTCAATTAAGACGGGTG+AGG | - | chr1_3:48392642-48392661 | Msa0122040:intron | 45.0% | |
| GGTGAGGTCAATGTTGTTCA+TGG | - | chr1_3:48392658-48392677 | Msa0122040:intron | 45.0% | |
| !! | ATGTTGTTCATGGTAGTGGC+AGG | - | chr1_3:48392668-48392687 | Msa0122040:CDS | 45.0% |
| CAGAAGAAACAGCCTGTTAC+CGG | - | chr1_3:48392730-48392749 | Msa0122040:CDS | 45.0% | |
| ! | GTGGAGATCTGGTCTTTATC+TGG | + | chr1_3:48392772-48392791 | None:intergenic | 45.0% |
| ! | ACTCTTTTCCAAGGCTGGTA+AGG | + | chr1_3:48392794-48392813 | None:intergenic | 45.0% |
| ! | TCCTCCATCACTCTTTTCCA+AGG | + | chr1_3:48392803-48392822 | None:intergenic | 45.0% |
| GACACCCATTCAGTCACAAA+AGG | - | chr1_3:48392837-48392856 | Msa0122040:intron | 45.0% | |
| AGTAAACACATTGTCTGGGC+AGG | - | chr1_3:48392864-48392883 | Msa0122040:intron | 45.0% | |
| !!! | ACTTTTTCAGCGAAGACTGG+AGG | - | chr1_3:48392919-48392938 | Msa0122040:intron | 45.0% |
| ! | TGACTTGTATCCCTTCCTTG+TGG | + | chr1_3:48393033-48393052 | None:intergenic | 45.0% |
| GGATACAAGTCACTCGAACA+AGG | - | chr1_3:48393041-48393060 | Msa0122040:intron | 45.0% | |
| ! | CAATGACTCTGGAGAAACAG+AGG | + | chr1_3:48393084-48393103 | None:intergenic | 45.0% |
| ! | CTCTGTTTCTCCAGAGTCAT+TGG | - | chr1_3:48393082-48393101 | Msa0122040:intron | 45.0% |
| TTCTATAATCTCGCGGTCCT+GGG | + | chr1_3:48393563-48393582 | None:intergenic | 45.0% | |
| TTTCTATAATCTCGCGGTCC+TGG | + | chr1_3:48393564-48393583 | None:intergenic | 45.0% | |
| GATGGTGAAGAGCCTCTAAA+AGG | + | chr1_3:48393613-48393632 | None:intergenic | 45.0% | |
| TAGAGGCTCTTCACCATCAT+TGG | - | chr1_3:48393615-48393634 | Msa0122040:intron | 45.0% | |
| AGAGGCTCTTCACCATCATT+GGG | - | chr1_3:48393616-48393635 | Msa0122040:intron | 45.0% | |
| GGGCAGAGATTTAGGCATAA+TGG | - | chr1_3:48393926-48393945 | Msa0122040:intron | 45.0% | |
| ! | GGCATAATGGAGATGTGAGT+AGG | - | chr1_3:48393939-48393958 | Msa0122040:intron | 45.0% |
| TGAACAGCAAGGATCTGCAA+TGG | + | chr1_3:48393998-48394017 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTTTTTTACTTT+TGG | - | chr1_3:48391033-48391052 | Msa0122040:intron | 5.0% |
| !! | AAAAATTAAAAATAAATTAC+AGG | - | chr1_3:48391240-48391259 | Msa0122040:intron | 5.0% |
| !! | AAAATTAAAAATAAATTACA+GGG | - | chr1_3:48391241-48391260 | Msa0122040:intron | 5.0% |
| AATGGTTGCAGTTGGAGGAG+TGG | + | chr1_3:48390324-48390343 | None:intergenic | 50.0% | |
| GGAAACCGTTTAGCCATCTC+TGG | - | chr1_3:48390513-48390532 | Msa0122040:three_prime_UTR | 50.0% | |
| TCTGGAAGAGATGCCAGAGA+TGG | + | chr1_3:48390529-48390548 | None:intergenic | 50.0% | |
| ACACACTGTGAGGTCCTAGT+TGG | + | chr1_3:48390638-48390657 | None:intergenic | 50.0% | |
| AAACTCGCACACACACTGTG+AGG | + | chr1_3:48390648-48390667 | None:intergenic | 50.0% | |
| GTCGGTGAGCATAACTCACT+TGG | - | chr1_3:48390798-48390817 | Msa0122040:intron | 50.0% | |
| ! | TTTTCCCTTGAGACTGCCGA+TGG | - | chr1_3:48391624-48391643 | Msa0122040:intron | 50.0% |
| GCATAGCTTTCCCAGTTTGG+AGG | + | chr1_3:48391887-48391906 | None:intergenic | 50.0% | |
| TCAGGCAACACCAACGAAGT+AGG | + | chr1_3:48392137-48392156 | None:intergenic | 50.0% | |
| AGCCTCAAAGGAGATGAGTG+GGG | - | chr1_3:48392205-48392224 | Msa0122040:CDS | 50.0% | |
| AACCCCACTCATCTCCTTTG+AGG | + | chr1_3:48392210-48392229 | None:intergenic | 50.0% | |
| GAGCTCTACCTCAACAGAAG+TGG | - | chr1_3:48392349-48392368 | Msa0122040:intron | 50.0% | |
| GGTATCACCGGATAAGACCA+CGG | - | chr1_3:48392580-48392599 | Msa0122040:intron | 50.0% | |
| GTATCACCGGATAAGACCAC+GGG | - | chr1_3:48392581-48392600 | Msa0122040:intron | 50.0% | |
| !! | CAATCTCCCGTGGTCTTATC+CGG | + | chr1_3:48392590-48392609 | None:intergenic | 50.0% |
| GACCACGGGAGATTGCAATA+AGG | - | chr1_3:48392595-48392614 | Msa0122040:intron | 50.0% | |
| ! | TGCCTTATTGCAATCTCCCG+TGG | + | chr1_3:48392600-48392619 | None:intergenic | 50.0% |
| !! | CGGTAACAGGCTGTTTCTTC+TGG | + | chr1_3:48392732-48392751 | None:intergenic | 50.0% |
| ! | CTTTTCCAAGGCTGGTAAGG+TGG | + | chr1_3:48392791-48392810 | None:intergenic | 50.0% |
| ! | CCATCACTCTTTTCCAAGGC+TGG | + | chr1_3:48392799-48392818 | None:intergenic | 50.0% |
| CCAGCCTTGGAAAAGAGTGA+TGG | - | chr1_3:48392796-48392815 | Msa0122040:intron | 50.0% | |
| GCCTTGGAAAAGAGTGATGG+AGG | - | chr1_3:48392799-48392818 | Msa0122040:intron | 50.0% | |
| ! | GGAAAAGAGTGATGGAGGAC+TGG | - | chr1_3:48392804-48392823 | Msa0122040:intron | 50.0% |
| ! | TGGCATTGGGTGAGAAGTGT+TGG | + | chr1_3:48393232-48393251 | None:intergenic | 50.0% |
| TTGCGCCAAAACTCTAAGCG+AGG | + | chr1_3:48393346-48393365 | None:intergenic | 50.0% | |
| GGAGATGTGAGTAGGTAGCT+AGG | - | chr1_3:48393947-48393966 | Msa0122040:intron | 50.0% | |
| !! | GGGGGTGCCATTGGAAGAAA+TGG | + | chr1_3:48390342-48390361 | None:intergenic | 55.0% |
| !! | ACAAGAAGTGGGGGTGCCAT+TGG | + | chr1_3:48390351-48390370 | None:intergenic | 55.0% |
| !! | GCTCTAGAATGCACCGGAGA+AGG | - | chr1_3:48391905-48391924 | Msa0122040:intron | 55.0% |
| !! | TTCGTTGGTGTTGCCTGACG+AGG | - | chr1_3:48392139-48392158 | Msa0122040:CDS | 55.0% |
| CTACGATGACCTCCAGATGC+AGG | + | chr1_3:48392311-48392330 | None:intergenic | 55.0% | |
| CTGCATCTGGAGGTCATCGT+AGG | - | chr1_3:48392309-48392328 | Msa0122040:intron | 55.0% | |
| GCAGGAATAGACGTAGTGCC+CGG | - | chr1_3:48392686-48392705 | Msa0122040:CDS | 55.0% | |
| ACAGCCTGTTACCGGAGATC+CGG | - | chr1_3:48392738-48392757 | Msa0122040:CDS | 55.0% | |
| TGGATGTGTTGCCGGATCTC+CGG | + | chr1_3:48392752-48392771 | None:intergenic | 55.0% | |
| AGGCTGGTAAGGTGGAGATC+TGG | + | chr1_3:48392783-48392802 | None:intergenic | 55.0% | |
| GATCTCCACCTTACCAGCCT+TGG | - | chr1_3:48392783-48392802 | Msa0122040:intron | 55.0% | |
| TATAATCTCGCGGTCCTGGG+TGG | + | chr1_3:48393560-48393579 | None:intergenic | 55.0% | |
| GCTCTTCACCATCATTGGGC+TGG | - | chr1_3:48393620-48393639 | Msa0122040:intron | 55.0% | |
| AGGGGCTGAGATTCGAACCC+CGG | - | chr1_3:48390845-48390864 | Msa0122040:intron | 60.0% | |
| GAGCAGCGCACGCTGGAAAA+TGG | - | chr1_3:48391678-48391697 | Msa0122040:intron | 60.0% | |
| ! | CATTTTCCCAGGGCCTCGTC+AGG | + | chr1_3:48392155-48392174 | None:intergenic | 60.0% |
| AAGCAGCAGCCTGCATCTGG+AGG | - | chr1_3:48392299-48392318 | Msa0122040:intron | 60.0% | |
| GTTGCCGGATCTCCGGTAAC+AGG | + | chr1_3:48392745-48392764 | None:intergenic | 60.0% | |
| CATGAACGAGCAGCGCACGC+TGG | - | chr1_3:48391671-48391690 | Msa0122040:intron | 65.0% | |
| GTGTTGCCTGACGAGGCCCT+GGG | - | chr1_3:48392146-48392165 | Msa0122040:CDS | 65.0% | |
| CGGAAGCAGCAGCCTGCATC+TGG | - | chr1_3:48392296-48392315 | Msa0122040:intron | 65.0% | |
| ! | GGTGTTGCCTGACGAGGCCC+TGG | - | chr1_3:48392145-48392164 | Msa0122040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 48390301 | 48394071 | 48390301 | ID=Msa0122040;Name=Msa0122040 |
| chr1_3 | mRNA | 48390301 | 48394071 | 48390301 | ID=Msa0122040-mRNA-1;Parent=Msa0122040;Name=Msa0122040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=10|0.77|0.7|1|0.77|0.7|10|406|415 |
| chr1_3 | exon | 48390301 | 48390594 | 48390301 | ID=Msa0122040-mRNA-1:exon:14620;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48390731 | 48390807 | 48390731 | ID=Msa0122040-mRNA-1:exon:14619;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48390985 | 48391043 | 48390985 | ID=Msa0122040-mRNA-1:exon:14618;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48391247 | 48391639 | 48391247 | ID=Msa0122040-mRNA-1:exon:14617;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48391714 | 48391820 | 48391714 | ID=Msa0122040-mRNA-1:exon:14616;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48391932 | 48392255 | 48391932 | ID=Msa0122040-mRNA-1:exon:14615;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48392368 | 48392515 | 48392368 | ID=Msa0122040-mRNA-1:exon:14614;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48392659 | 48392758 | 48392659 | ID=Msa0122040-mRNA-1:exon:14613;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48393822 | 48393898 | 48393822 | ID=Msa0122040-mRNA-1:exon:14612;Parent=Msa0122040-mRNA-1 |
| chr1_3 | exon | 48393987 | 48394071 | 48393987 | ID=Msa0122040-mRNA-1:exon:14611;Parent=Msa0122040-mRNA-1 |
| chr1_3 | five_prime_UTR | 48394062 | 48394071 | 48394062 | ID=Msa0122040-mRNA-1:five_prime_utr;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48393987 | 48394061 | 48393987 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48393822 | 48393898 | 48393822 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48392659 | 48392758 | 48392659 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48392368 | 48392515 | 48392368 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48391932 | 48392255 | 48391932 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48391714 | 48391820 | 48391714 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48391247 | 48391639 | 48391247 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | CDS | 48391020 | 48391043 | 48391020 | ID=Msa0122040-mRNA-1:cds;Parent=Msa0122040-mRNA-1 |
| chr1_3 | three_prime_UTR | 48390985 | 48391019 | 48390985 | ID=Msa0122040-mRNA-1:three_prime_utr;Parent=Msa0122040-mRNA-1 |
| chr1_3 | three_prime_UTR | 48390731 | 48390807 | 48390731 | ID=Msa0122040-mRNA-1:three_prime_utr;Parent=Msa0122040-mRNA-1 |
| chr1_3 | three_prime_UTR | 48390301 | 48390594 | 48390301 | ID=Msa0122040-mRNA-1:three_prime_utr;Parent=Msa0122040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
