Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0026800 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa0026800 | 0.801078 | 1.066760e-48 | -8.615850e-47 |
| Msa0017510 | Msa0026800 | 0.846644 | 1.907713e-59 | -8.615850e-47 |
| Msa0026800 | Msa0028420 | 0.818517 | 1.880777e-52 | -8.615850e-47 |
| Msa0026800 | Msa0029270 | 0.809708 | 1.656037e-50 | -8.615850e-47 |
| Msa0026800 | Msa0032430 | 0.825733 | 3.989698e-54 | -8.615850e-47 |
| Msa0026800 | Msa0047030 | 0.832364 | 9.862839e-56 | -8.615850e-47 |
| Msa0026800 | Msa0047070 | 0.801270 | 9.745765e-49 | -8.615850e-47 |
| Msa0026800 | Msa0063890 | 0.819227 | 1.297531e-52 | -8.615850e-47 |
| Msa0026800 | Msa0079380 | 0.804038 | 2.616860e-49 | -8.615850e-47 |
| Msa0026800 | Msa0089630 | 0.829132 | 6.106496e-55 | -8.615850e-47 |
| Msa0026800 | Msa0091710 | 0.811678 | 6.209062e-51 | -8.615850e-47 |
| Msa0026800 | Msa0101440 | 0.820660 | 6.098312e-53 | -8.615850e-47 |
| Msa0026800 | Msa0115080 | 0.804903 | 1.727447e-49 | -8.615850e-47 |
| Msa0026800 | Msa0122040 | 0.857250 | 1.854456e-62 | -8.615850e-47 |
| Msa0026800 | Msa0122510 | 0.830025 | 3.704944e-55 | -8.615850e-47 |
| Msa0026800 | Msa0124060 | 0.834619 | 2.698669e-56 | -8.615850e-47 |
| Msa0026800 | Msa0127050 | 0.815031 | 1.138395e-51 | -8.615850e-47 |
| Msa0026800 | Msa0137880 | 0.805140 | 1.541332e-49 | -8.615850e-47 |
| Msa0026800 | Msa0139060 | 0.807516 | 4.865672e-50 | -8.615850e-47 |
| Msa0026800 | Msa0145440 | 0.811079 | 8.375919e-51 | -8.615850e-47 |
| Msa0026800 | Msa0157290 | 0.847096 | 1.434945e-59 | -8.615850e-47 |
| Msa0026800 | Msa0167010 | 0.838418 | 2.910198e-57 | -8.615850e-47 |
| Msa0026800 | Msa0168500 | 0.828555 | 8.425168e-55 | -8.615850e-47 |
| Msa0026800 | Msa0169310 | 0.821302 | 4.339341e-53 | -8.615850e-47 |
| Msa0026800 | Msa0172070 | 0.826261 | 2.989999e-54 | -8.615850e-47 |
| Msa0026800 | Msa0175780 | 0.815180 | 1.054822e-51 | -8.615850e-47 |
| Msa0026800 | Msa0211150 | 0.829856 | 4.073685e-55 | -8.615850e-47 |
| Msa0026800 | Msa0216910 | 0.818418 | 1.980676e-52 | -8.615850e-47 |
| Msa0026800 | Msa0229230 | 0.829239 | 5.754079e-55 | -8.615850e-47 |
| Msa0026800 | Msa0255090 | 0.803011 | 4.272288e-49 | -8.615850e-47 |
| Msa0026800 | Msa0257460 | 0.803778 | 2.963816e-49 | -8.615850e-47 |
| Msa0026800 | Msa0261340 | 0.822757 | 1.996446e-53 | -8.615850e-47 |
| Msa0026800 | Msa0272490 | 0.807143 | 5.838369e-50 | -8.615850e-47 |
| Msa0026800 | Msa0287740 | 0.811339 | 7.356202e-51 | -8.615850e-47 |
| Msa0026800 | Msa0292400 | 0.825814 | 3.817481e-54 | -8.615850e-47 |
| Msa0026800 | Msa0312700 | 0.810628 | 1.048569e-50 | -8.615850e-47 |
| Msa0026800 | Msa0357340 | 0.809770 | 1.605746e-50 | -8.615850e-47 |
| Msa0026800 | Msa0363070 | 0.805016 | 1.636221e-49 | -8.615850e-47 |
| Msa0026800 | Msa0367870 | 0.805298 | 1.428360e-49 | -8.615850e-47 |
| Msa0026800 | Msa0379770 | 0.816808 | 4.568093e-52 | -8.615850e-47 |
| Msa0026800 | Msa0386090 | 0.829340 | 5.437575e-55 | -8.615850e-47 |
| Msa0026800 | Msa0392510 | 0.811479 | 6.858829e-51 | -8.615850e-47 |
| Msa0026800 | Msa0419700 | 0.808643 | 2.799597e-50 | -8.615850e-47 |
| Msa0026800 | Msa0428080 | 0.801454 | 8.934285e-49 | -8.615850e-47 |
| Msa0026800 | Msa0428150 | 0.806286 | 8.854576e-50 | -8.615850e-47 |
| Msa0026800 | Msa0428590 | 0.817096 | 3.936494e-52 | -8.615850e-47 |
| Msa0026800 | Msa0436490 | -0.805702 | 1.174860e-49 | -8.615850e-47 |
| Msa0026800 | Msa0462500 | 0.800710 | 1.268337e-48 | -8.615850e-47 |
| Msa0026800 | Msa0464680 | 0.811079 | 8.376614e-51 | -8.615850e-47 |
| Msa0026800 | Msa0467490 | 0.819850 | 9.350637e-53 | -8.615850e-47 |
| Msa0026800 | Msa0474520 | 0.814189 | 1.749118e-51 | -8.615850e-47 |
| Msa0026800 | Msa0487420 | 0.823489 | 1.347454e-53 | -8.615850e-47 |
| Msa0026800 | Msa0487800 | 0.805763 | 1.141142e-49 | -8.615850e-47 |
| Msa0026800 | Msa0507680 | 0.802188 | 6.316040e-49 | -8.615850e-47 |
| Msa0026800 | Msa0529890 | 0.820753 | 5.806088e-53 | -8.615850e-47 |
| Msa0026800 | Msa0531180 | 0.804503 | 2.093911e-49 | -8.615850e-47 |
| Msa0026800 | Msa0569200 | 0.816142 | 6.439275e-52 | -8.615850e-47 |
| Msa0026800 | Msa0585560 | 0.821358 | 4.213071e-53 | -8.615850e-47 |
| Msa0026800 | Msa0610430 | 0.802956 | 4.386638e-49 | -8.615850e-47 |
| Msa0026800 | Msa0615710 | 0.830089 | 3.573442e-55 | -8.615850e-47 |
| Msa0026800 | Msa0625720 | 0.818830 | 1.597440e-52 | -8.615850e-47 |
| Msa0026800 | Msa0650020 | 0.800002 | 1.768107e-48 | -8.615850e-47 |
| Msa0026800 | Msa0661650 | 0.833168 | 6.225621e-56 | -8.615850e-47 |
| Msa0026800 | Msa0663390 | 0.821669 | 3.570389e-53 | -8.615850e-47 |
| Msa0026800 | Msa0669320 | 0.809197 | 2.131460e-50 | -8.615850e-47 |
| Msa0026800 | Msa0709400 | 0.803793 | 2.941775e-49 | -8.615850e-47 |
| Msa0026800 | Msa0730430 | 0.809651 | 1.702715e-50 | -8.615850e-47 |
| Msa0026800 | Msa0743720 | 0.806973 | 6.342888e-50 | -8.615850e-47 |
| Msa0026800 | Msa0765840 | 0.801596 | 8.357472e-49 | -8.615850e-47 |
| Msa0026800 | Msa0765910 | 0.806636 | 7.470601e-50 | -8.615850e-47 |
| Msa0026800 | Msa0770720 | 0.815370 | 9.574454e-52 | -8.615850e-47 |
| Msa0026800 | Msa0793800 | 0.814505 | 1.488739e-51 | -8.615850e-47 |
| Msa0026800 | Msa0806790 | 0.821384 | 4.154132e-53 | -8.615850e-47 |
| Msa0026800 | Msa0861870 | 0.809653 | 1.701366e-50 | -8.615850e-47 |
| Msa0026800 | Msa0880140 | 0.843876 | 1.070235e-58 | -8.615850e-47 |
| Msa0026800 | Msa0890320 | 0.801476 | 8.845009e-49 | -8.615850e-47 |
| Msa0026800 | Msa0892120 | 0.802046 | 6.756382e-49 | -8.615850e-47 |
| Msa0026800 | Msa0925180 | 0.822690 | 2.069374e-53 | -8.615850e-47 |
| Msa0026800 | Msa0945110 | 0.845564 | 3.753747e-59 | -8.615850e-47 |
| Msa0026800 | Msa0945970 | 0.804528 | 2.068962e-49 | -8.615850e-47 |
| Msa0026800 | Msa0947660 | 0.823696 | 1.205679e-53 | -8.615850e-47 |
| Msa0026800 | Msa0955080 | 0.802380 | 5.767676e-49 | -8.615850e-47 |
| Msa0026800 | Msa0960600 | 0.802669 | 5.027514e-49 | -8.615850e-47 |
| Msa0026800 | Msa0963270 | 0.802271 | 6.073303e-49 | -8.615850e-47 |
| Msa0026800 | Msa0966400 | 0.802459 | 5.554271e-49 | -8.615850e-47 |
| Msa0026800 | Msa0967870 | 0.800141 | 1.656105e-48 | -8.615850e-47 |
| Msa0026800 | Msa0981810 | 0.802905 | 4.493141e-49 | -8.615850e-47 |
| Msa0026800 | Msa1019000 | 0.807361 | 5.247493e-50 | -8.615850e-47 |
| Msa0026800 | Msa1019430 | 0.837765 | 4.286020e-57 | -8.615850e-47 |
| Msa0026800 | Msa1019470 | 0.828994 | 6.595257e-55 | -8.615850e-47 |
| Msa0026800 | Msa1029250 | 0.811628 | 6.366699e-51 | -8.615850e-47 |
| Msa0026800 | Msa1075540 | 0.805242 | 1.467212e-49 | -8.615850e-47 |
| Msa0026800 | Msa1075650 | 0.803800 | 2.932909e-49 | -8.615850e-47 |
| Msa0026800 | Msa1084960 | 0.836002 | 1.207970e-56 | -8.615850e-47 |
| Msa0026800 | Msa1100050 | 0.828109 | 1.079304e-54 | -8.615850e-47 |
| Msa0026800 | Msa1111090 | 0.828431 | 9.023295e-55 | -8.615850e-47 |
| Msa0026800 | Msa1111130 | 0.803711 | 3.060306e-49 | -8.615850e-47 |
| Msa0026800 | Msa1119940 | 0.805050 | 1.609356e-49 | -8.615850e-47 |
| Msa0026800 | Msa1124960 | 0.804742 | 1.866531e-49 | -8.615850e-47 |
| Msa0026800 | Msa1147900 | 0.800860 | 1.182316e-48 | -8.615850e-47 |
| Msa0026800 | Msa1162270 | 0.803827 | 2.894345e-49 | -8.615850e-47 |
| Msa0026800 | Msa1209460 | 0.814897 | 1.219069e-51 | -8.615850e-47 |
| Msa0026800 | Msa1225700 | 0.831732 | 1.412579e-55 | -8.615850e-47 |
| Msa0026800 | Msa1226660 | 0.823760 | 1.164457e-53 | -8.615850e-47 |
| Msa0026800 | Msa1229500 | 0.813394 | 2.617177e-51 | -8.615850e-47 |
| Msa0026800 | Msa1271990 | 0.802175 | 6.354675e-49 | -8.615850e-47 |
| Msa0026800 | Msa1302830 | 0.801501 | 8.742111e-49 | -8.615850e-47 |
| Msa0026800 | Msa1327680 | 0.814253 | 1.692977e-51 | -8.615850e-47 |
| Msa0026800 | Msa1330410 | 0.810650 | 1.037029e-50 | -8.615850e-47 |
| Msa0026800 | Msa1372760 | 0.804173 | 2.453217e-49 | -8.615850e-47 |
| Msa0026800 | Msa1387870 | 0.809874 | 1.524666e-50 | -8.615850e-47 |
| Msa0026800 | Msa1391770 | 0.800652 | 1.303413e-48 | -8.615850e-47 |
| Msa0026800 | Msa1392240 | 0.842908 | 1.940257e-58 | -8.615850e-47 |
| Msa0026800 | Msa1419370 | 0.823482 | 1.353011e-53 | -8.615850e-47 |
| Msa0026800 | Msa1424750 | 0.806657 | 7.395049e-50 | -8.615850e-47 |
| Msa0026800 | Msa1440560 | 0.835739 | 1.407963e-56 | -8.615850e-47 |
| Msa0026800 | Msa1466540 | 0.814474 | 1.512290e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026800 | MtrunA17_Chr1g0182611 | 91.327 | 392 | 34 | 0 | 1 | 392 | 88 | 479 | 0.0 | 732 |
| Msa0026800 | MtrunA17_Chr1g0182621 | 68.195 | 349 | 99 | 3 | 44 | 392 | 246 | 582 | 1.42e-148 | 433 |
| Msa0026800 | MtrunA17_Chr1g0182621 | 54.962 | 262 | 104 | 3 | 1 | 259 | 92 | 342 | 3.21e-83 | 265 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0026800 | AT5G02520.2 | 54.167 | 48 | 22 | 0 | 345 | 392 | 528 | 575 | 2.00e-11 | 66.2 |
| Msa0026800 | AT5G02520.1 | 54.167 | 48 | 22 | 0 | 345 | 392 | 527 | 574 | 2.04e-11 | 65.9 |
Find 123 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATGATATTTC+TGG | 0.152483 | 1_1:+50848912 | None:intergenic |
| TTCTACCTCGCTTAGAGTTT+TGG | 0.216024 | 1_1:-50847997 | Msa0026800:CDS |
| CTCTGTTTCTCCAGAGTCAT+TGG | 0.218790 | 1_1:-50848253 | Msa0026800:CDS |
| CGGTAACAGGCTGTTTCTTC+TGG | 0.258466 | 1_1:+50848607 | None:intergenic |
| GATTAACAGGGCAGAGATTT+AGG | 0.261531 | 1_1:-50847416 | Msa0026800:three_prime_UTR |
| TGCAAGAGAGATAATTAATT+AGG | 0.263678 | 1_1:-50847471 | Msa0026800:three_prime_UTR |
| CATACTTTATGTTGTAAATC+AGG | 0.265922 | 1_1:-50849787 | Msa0026800:five_prime_UTR |
| ACAAATGGTATATGATTAAC+AGG | 0.290151 | 1_1:-50847429 | Msa0026800:three_prime_UTR |
| TCAAACACCTATTTATAATA+TGG | 0.307116 | 1_1:-50847969 | Msa0026800:intron |
| GAGGTTGTTATAAGAGAAAA+AGG | 0.309998 | 1_1:-50848398 | Msa0026800:CDS |
| TGTCAAGAAATCTTGTTTGA+TGG | 0.311615 | 1_1:-50849351 | Msa0026800:intron |
| CGGAAGCAGCAGCCTGCATC+TGG | 0.314800 | 1_1:-50849038 | Msa0026800:CDS |
| TAGAGGCTCTTCACCATCAT+TGG | 0.318246 | 1_1:-50847719 | Msa0026800:three_prime_UTR |
| TCACATACCATATTATAAAT+AGG | 0.323614 | 1_1:+50847962 | None:intergenic |
| TCTTTATCTGGATGTGTTGC+CGG | 0.325220 | 1_1:+50848579 | None:intergenic |
| CCGCGAGATTATAGAAATTC+AGG | 0.330860 | 1_1:-50847767 | Msa0026800:CDS |
| GAGCAGCGCACGCTGGAAAA+TGG | 0.336004 | 1_1:-50849656 | Msa0026800:CDS |
| AGAGCATAGCTTTCCCAGTT+TGG | 0.337878 | 1_1:+50849447 | None:intergenic |
| TGATTCGGCCAATGCTGTTC+CGG | 0.339045 | 1_1:-50849391 | Msa0026800:CDS |
| GGAATAGTAAACACATTGTC+TGG | 0.341105 | 1_1:-50848477 | Msa0026800:CDS |
| GTGGAGATCTGGTCTTTATC+TGG | 0.363337 | 1_1:+50848567 | None:intergenic |
| TCATATACCATTTGTATGTT+CGG | 0.364214 | 1_1:+50847437 | None:intergenic |
| AGTGGGGTTGATGTTACTTA+TGG | 0.365193 | 1_1:-50849113 | Msa0026800:CDS |
| CTCTCAATTACTATCATAAG+AGG | 0.383054 | 1_1:-50849832 | Msa0026800:five_prime_UTR |
| GATGGTGAAGAGCCTCTAAA+AGG | 0.383621 | 1_1:+50847724 | None:intergenic |
| CAGAAGAAACAGCCTGTTAC+CGG | 0.388877 | 1_1:-50848606 | Msa0026800:CDS |
| AGAGGCTCTTCACCATCATT+GGG | 0.392278 | 1_1:-50847718 | Msa0026800:three_prime_UTR |
| AGAGTTTAACATTATGCAAC+CGG | 0.398439 | 1_1:+50848631 | None:intergenic |
| GCAAGAGAGATAATTAATTA+GGG | 0.398779 | 1_1:-50847470 | Msa0026800:three_prime_UTR |
| AACCCCACTCATCTCCTTTG+AGG | 0.416310 | 1_1:+50849127 | None:intergenic |
| GAGGATTCTCTTCCACTGTA+TGG | 0.421691 | 1_1:-50847273 | Msa0026800:three_prime_UTR |
| GGTGTTGCCTGACGAGGCCC+TGG | 0.428575 | 1_1:-50849189 | Msa0026800:CDS |
| GGGCAGAGATTTAGGCATAA+TGG | 0.434677 | 1_1:-50847408 | Msa0026800:three_prime_UTR |
| TCTGTTTCTCCAGAGTCATT+GGG | 0.438436 | 1_1:-50848252 | Msa0026800:CDS |
| CAATCTCCCGTGGTCTTATC+CGG | 0.440181 | 1_1:+50848747 | None:intergenic |
| TCCTACTTCTTTGGTATCAC+CGG | 0.443039 | 1_1:-50848766 | Msa0026800:CDS |
| GGCATTCCTCGAAGATGAAC+GGG | 0.446700 | 1_1:-50848718 | Msa0026800:CDS |
| GGTGAGGTCAATGTTGTTCA+TGG | 0.450542 | 1_1:-50848678 | Msa0026800:CDS |
| GACACCCATTCAGTCACAAA+AGG | 0.454994 | 1_1:-50848499 | Msa0026800:CDS |
| GTTGCCGGATCTCCGGTAAC+AGG | 0.455494 | 1_1:+50848594 | None:intergenic |
| ACATGTCCCGTTCATCTTCG+AGG | 0.466823 | 1_1:+50848712 | None:intergenic |
| TGTATGGAGCTGAGCTCCCT+TGG | 0.471768 | 1_1:-50847257 | Msa0026800:three_prime_UTR |
| AGGCTGGTAAGGTGGAGATC+TGG | 0.472582 | 1_1:+50848556 | None:intergenic |
| GGAGATGTGAGTAGGTAGCT+AGG | 0.475346 | 1_1:-50847387 | Msa0026800:three_prime_UTR |
| GATCTCCACCTTACCAGCCT+TGG | 0.478185 | 1_1:-50848553 | Msa0026800:CDS |
| ACAGCCTGTTACCGGAGATC+CGG | 0.478659 | 1_1:-50848598 | Msa0026800:CDS |
| GACCACGGGAGATTGCAATA+AGG | 0.479142 | 1_1:-50848739 | Msa0026800:CDS |
| TGGATGTGTTGCCGGATCTC+CGG | 0.481700 | 1_1:+50848587 | None:intergenic |
| ATCTGAAGCTGATATTGATT+CGG | 0.486466 | 1_1:-50849406 | Msa0026800:CDS |
| AATATATACCAGCCCAATGA+TGG | 0.497740 | 1_1:+50847706 | None:intergenic |
| GCTCTAGAATGCACCGGAGA+AGG | 0.500619 | 1_1:-50849429 | Msa0026800:CDS |
| AAATTTCATTCCTACTTCGT+TGG | 0.500725 | 1_1:-50849210 | Msa0026800:CDS |
| GAACAAAACACAAGATAGAA+AGG | 0.502201 | 1_1:+50847305 | None:intergenic |
| GTCAATGTTGTTCATGGTAG+TGG | 0.510692 | 1_1:-50848672 | Msa0026800:CDS |
| AGAAGTGGAAACTCGTGATT+CGG | 0.511753 | 1_1:-50848970 | Msa0026800:CDS |
| CTGTAAAATCTTCACAAGGA+AGG | 0.513105 | 1_1:-50848317 | Msa0026800:CDS |
| TGTAAAATCTTCACAAGGAA+GGG | 0.521070 | 1_1:-50848316 | Msa0026800:CDS |
| TGGTATATATGTTATCACTA+GGG | 0.526872 | 1_1:-50849690 | Msa0026800:five_prime_UTR |
| TACACTATCCGGAACAGCAT+TGG | 0.528438 | 1_1:+50849383 | None:intergenic |
| ATTACAACCGAACATACAAA+TGG | 0.528654 | 1_1:-50847444 | Msa0026800:three_prime_UTR |
| CTACGATGACCTCCAGATGC+AGG | 0.528905 | 1_1:+50849026 | None:intergenic |
| ACACCCATTCAGTCACAAAA+GGG | 0.532185 | 1_1:-50848498 | Msa0026800:CDS |
| GTTGATGTTACTTATGGTAG+TGG | 0.532246 | 1_1:-50849107 | Msa0026800:CDS |
| ATACTTTATGTTGTAAATCA+GGG | 0.535760 | 1_1:-50849786 | Msa0026800:five_prime_UTR |
| GGAAAATGCAAGAAACCATT+CGG | 0.536222 | 1_1:-50849167 | Msa0026800:CDS |
| AAAAGAATGCAAAGCCTCAA+AGG | 0.537351 | 1_1:-50849141 | Msa0026800:CDS |
| CAAATTGCAGATACACTATC+CGG | 0.539970 | 1_1:+50849372 | None:intergenic |
| AACATTAATAGCACGTAACC+TGG | 0.544388 | 1_1:+50849067 | None:intergenic |
| ATATACCATCGGCAGTCTCA+AGG | 0.545294 | 1_1:+50849705 | None:intergenic |
| GAGCTCTACCTCAACAGAAG+TGG | 0.545818 | 1_1:-50848985 | Msa0026800:CDS |
| AGTAAACACATTGTCTGGGC+AGG | 0.549663 | 1_1:-50848472 | Msa0026800:CDS |
| TTCGTTGGTGTTGCCTGACG+AGG | 0.551013 | 1_1:-50849195 | Msa0026800:CDS |
| GCTCTTCACCATCATTGGGC+TGG | 0.552717 | 1_1:-50847714 | Msa0026800:intron |
| ATGTTGTTCATGGTAGTGGC+AGG | 0.553357 | 1_1:-50848668 | Msa0026800:CDS |
| ATCAGCTTCAGATCCTTCTC+CGG | 0.554639 | 1_1:+50849416 | None:intergenic |
| ATGGTATATATGTTATCACT+AGG | 0.556691 | 1_1:-50849691 | Msa0026800:five_prime_UTR |
| GCGAAAATAGACATGGTACC+AGG | 0.560344 | 1_1:-50849085 | Msa0026800:CDS |
| AAGCCTCAAAGGAGATGAGT+GGG | 0.564158 | 1_1:-50849130 | Msa0026800:CDS |
| GCATAGCTTTCCCAGTTTGG+AGG | 0.565501 | 1_1:+50849450 | None:intergenic |
| AAGCAGCAGCCTGCATCTGG+AGG | 0.566088 | 1_1:-50849035 | Msa0026800:CDS |
| GCAGGAATAGACGTAGTGCC+CGG | 0.566956 | 1_1:-50848650 | Msa0026800:CDS |
| TCAGGCAACACCAACGAAGT+AGG | 0.568738 | 1_1:+50849200 | None:intergenic |
| GGCATAATGGAGATGTGAGT+AGG | 0.571720 | 1_1:-50847395 | Msa0026800:three_prime_UTR |
| GGAAAAGAGTGATGGAGGAC+TGG | 0.572017 | 1_1:-50848532 | Msa0026800:CDS |
| AGGCATTCCTCGAAGATGAA+CGG | 0.572872 | 1_1:-50848719 | Msa0026800:CDS |
| TCCGGTGATACCAAAGAAGT+AGG | 0.573504 | 1_1:+50848765 | None:intergenic |
| GGATACAAGTCACTCGAACA+AGG | 0.576987 | 1_1:-50848295 | Msa0026800:CDS |
| ACGAGTTTCCACTTCTGTTG+AGG | 0.577453 | 1_1:+50848977 | None:intergenic |
| CATGAACGAGCAGCGCACGC+TGG | 0.579334 | 1_1:-50849663 | Msa0026800:CDS |
| GGTATATATGTTATCACTAG+GGG | 0.588021 | 1_1:-50849689 | Msa0026800:five_prime_UTR |
| CATCCAGAAATATCATCTGA+TGG | 0.590199 | 1_1:-50848915 | Msa0026800:intron |
| AGCTATGCTCTAGAATGCAC+CGG | 0.591217 | 1_1:-50849435 | Msa0026800:CDS |
| ACGGGACATGTCAATTAAGA+CGG | 0.591957 | 1_1:-50848700 | Msa0026800:CDS |
| CGGGACATGTCAATTAAGAC+GGG | 0.595490 | 1_1:-50848699 | Msa0026800:CDS |
| AGTGTAATTTATCTAACCAA+GGG | 0.599817 | 1_1:+50847241 | None:intergenic |
| CCTGAATTTCTATAATCTCG+CGG | 0.600251 | 1_1:+50847767 | None:intergenic |
| TGCCTTATTGCAATCTCCCG+TGG | 0.601695 | 1_1:+50848737 | None:intergenic |
| TATACCATCGGCAGTCTCAA+GGG | 0.605137 | 1_1:+50849706 | None:intergenic |
| GAATAGTAAACACATTGTCT+GGG | 0.607705 | 1_1:-50848476 | Msa0026800:CDS |
| CCAGCCTTGGAAAAGAGTGA+TGG | 0.608271 | 1_1:-50848540 | Msa0026800:CDS |
| GATACAAGTCACTCGAACAA+GGG | 0.609110 | 1_1:-50848294 | Msa0026800:CDS |
| GGGAGCTCAGCTCCATACAG+TGG | 0.612646 | 1_1:+50847261 | None:intergenic |
| GAGTGTAATTTATCTAACCA+AGG | 0.612988 | 1_1:+50847240 | None:intergenic |
| ACAGTTGAAACAGATGCAGT+TGG | 0.619629 | 1_1:-50848372 | Msa0026800:CDS |
| CTGCATCTGGAGGTCATCGT+AGG | 0.620919 | 1_1:-50849025 | Msa0026800:CDS |
| GCCTTGGAAAAGAGTGATGG+AGG | 0.621071 | 1_1:-50848537 | Msa0026800:CDS |
| AGTGATAACATATATACCAT+CGG | 0.622033 | 1_1:+50849694 | None:intergenic |
| GTATCACCGGATAAGACCAC+GGG | 0.626364 | 1_1:-50848753 | Msa0026800:CDS |
| TGAACAGCAAGGATCTGCAA+TGG | 0.630789 | 1_1:+50847339 | None:intergenic |
| GTGTTGCCTGACGAGGCCCT+GGG | 0.635492 | 1_1:-50849188 | Msa0026800:CDS |
| CATGTCAATTAAGACGGGTG+AGG | 0.637260 | 1_1:-50848694 | Msa0026800:CDS |
| GAGTTTAACATTATGCAACC+GGG | 0.641017 | 1_1:+50848632 | None:intergenic |
| AAAGCCTCAAAGGAGATGAG+TGG | 0.652543 | 1_1:-50849131 | Msa0026800:CDS |
| AAAAGAGAGACTGAACAGCA+AGG | 0.661526 | 1_1:+50847328 | None:intergenic |
| CAATGACTCTGGAGAAACAG+AGG | 0.661940 | 1_1:+50848254 | None:intergenic |
| GTGCTATTAATGTTTGTCAG+CGG | 0.670687 | 1_1:-50849058 | Msa0026800:CDS |
| GGTATCACCGGATAAGACCA+CGG | 0.680385 | 1_1:-50848754 | Msa0026800:CDS |
| TCTTCTGTAAAATCTTCACA+AGG | 0.686047 | 1_1:-50848321 | Msa0026800:CDS |
| GAGATTATAGAAATTCAGGA+AGG | 0.686775 | 1_1:-50847763 | Msa0026800:CDS |
| GGTAGTGGCGAAAATAGACA+TGG | 0.702887 | 1_1:-50849092 | Msa0026800:CDS |
| TTGCGCCAAAACTCTAAGCG+AGG | 0.703796 | 1_1:+50847992 | None:intergenic |
| AGCCTCAAAGGAGATGAGTG+GGG | 0.721063 | 1_1:-50849129 | Msa0026800:CDS |
| CAAATGGTATATGATTAACA+GGG | 0.740844 | 1_1:-50847428 | Msa0026800:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCAAAGAATTTTTTATA+TGG | - | chr1_1:50847606-50847625 | Msa0026800:intron | 10.0% |
| !! | ATGATAATACATTAAACAAA+TGG | + | chr1_1:50848245-50848264 | None:intergenic | 15.0% |
| !! | AATAAATCCTAGATATAAAA+TGG | + | chr1_1:50849206-50849225 | None:intergenic | 15.0% |
| !! | ATACTTTATGTTGTAAATCA+GGG | - | chr1_1:50847297-50847316 | Msa0026800:three_prime_UTR | 20.0% |
| !!! | ACATCATATCTTTTGATAAT+AGG | + | chr1_1:50847352-50847371 | None:intergenic | 20.0% |
| !!! | GGTTTAATATTTTTTCTCTT+AGG | + | chr1_1:50848738-50848757 | None:intergenic | 20.0% |
| !! | ATATACAAAAATGCTAACAA+TGG | + | chr1_1:50849000-50849019 | None:intergenic | 20.0% |
| !!! | ATTGTTAGCATTTTTGTATA+TGG | - | chr1_1:50848999-50849018 | Msa0026800:CDS | 20.0% |
| !! | TCAAACACCTATTTATAATA+TGG | - | chr1_1:50849114-50849133 | Msa0026800:CDS | 20.0% |
| !! | TCACATACCATATTATAAAT+AGG | + | chr1_1:50849124-50849143 | None:intergenic | 20.0% |
| !! | ATGCATATGATATCTAATAA+TGG | + | chr1_1:50849182-50849201 | None:intergenic | 20.0% |
| !!! | TAGGATTTATTTTCTCTTTA+AGG | - | chr1_1:50849215-50849234 | Msa0026800:CDS | 20.0% |
| !!! | ATTTATTTTCTCTTTAAGGT+GGG | - | chr1_1:50849219-50849238 | Msa0026800:CDS | 20.0% |
| !!! | ACAATCTATAATCTTTTAAC+TGG | - | chr1_1:50849267-50849286 | Msa0026800:intron | 20.0% |
| ! | CATACTTTATGTTGTAAATC+AGG | - | chr1_1:50847296-50847315 | Msa0026800:three_prime_UTR | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+TGG | + | chr1_1:50847347-50847366 | None:intergenic | 25.0% |
| ! | AGTGATAACATATATACCAT+CGG | + | chr1_1:50847392-50847411 | None:intergenic | 25.0% |
| ! | ATGGTATATATGTTATCACT+AGG | - | chr1_1:50847392-50847411 | Msa0026800:three_prime_UTR | 25.0% |
| ! | TGGTATATATGTTATCACTA+GGG | - | chr1_1:50847393-50847412 | Msa0026800:three_prime_UTR | 25.0% |
| ! | AAACTCAACGTCATAAAATA+AGG | + | chr1_1:50847536-50847555 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTGCCTACTTTA+TGG | - | chr1_1:50847579-50847598 | Msa0026800:intron | 25.0% |
| ! | TTGAAATCTAACCATAAAGT+AGG | + | chr1_1:50847593-50847612 | None:intergenic | 25.0% |
| !!! | TTGTTTGATGGTAAGTATTT+TGG | - | chr1_1:50847744-50847763 | Msa0026800:exon | 25.0% |
| ! | AGGTTGTTATAAGAGAAAAA+GGG | - | chr1_1:50848686-50848705 | Msa0026800:CDS | 25.0% |
| ! | AAAGAATAGAGTGAAGTAAA+TGG | + | chr1_1:50849037-50849056 | None:intergenic | 25.0% |
| ! | TTCACTCTATTCTTTATGTT+TGG | - | chr1_1:50849042-50849061 | Msa0026800:CDS | 25.0% |
| ! | TCACTCTATTCTTTATGTTT+GGG | - | chr1_1:50849043-50849062 | Msa0026800:CDS | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1_1:50849055-50849074 | Msa0026800:CDS | 25.0% |
| !! | ATGCATACCATTTTATATCT+AGG | - | chr1_1:50849196-50849215 | Msa0026800:CDS | 25.0% |
| !!! | GATTTATTTTCTCTTTAAGG+TGG | - | chr1_1:50849218-50849237 | Msa0026800:CDS | 25.0% |
| !! | TCTTTTATATCACCTTTTAG+AGG | - | chr1_1:50849347-50849366 | Msa0026800:intron | 25.0% |
| !! | TTTTTATCAGAACTATCATG+TGG | - | chr1_1:50849431-50849450 | Msa0026800:CDS | 25.0% |
| ! | TGCAAGAGAGATAATTAATT+AGG | - | chr1_1:50849612-50849631 | Msa0026800:intron | 25.0% |
| ! | GCAAGAGAGATAATTAATTA+GGG | - | chr1_1:50849613-50849632 | Msa0026800:intron | 25.0% |
| ! | TCATATACCATTTGTATGTT+CGG | + | chr1_1:50849649-50849668 | None:intergenic | 25.0% |
| ! | ACAAATGGTATATGATTAAC+AGG | - | chr1_1:50849654-50849673 | Msa0026800:CDS | 25.0% |
| ! | CAAATGGTATATGATTAACA+GGG | - | chr1_1:50849655-50849674 | Msa0026800:CDS | 25.0% |
| CTCTCAATTACTATCATAAG+AGG | - | chr1_1:50847251-50847270 | Msa0026800:three_prime_UTR | 30.0% | |
| GGTATATATGTTATCACTAG+GGG | - | chr1_1:50847394-50847413 | Msa0026800:three_prime_UTR | 30.0% | |
| ! | ATCTGAAGCTGATATTGATT+CGG | - | chr1_1:50847677-50847696 | Msa0026800:intron | 30.0% |
| ! | TGTCAAGAAATCTTGTTTGA+TGG | - | chr1_1:50847732-50847751 | Msa0026800:three_prime_UTR | 30.0% |
| !! | GTCAAAACATTTCTAAGACA+TGG | + | chr1_1:50847793-50847812 | None:intergenic | 30.0% |
| !!! | TTGGTTTTAATTGTTGTTGC+AGG | - | chr1_1:50847844-50847863 | Msa0026800:intron | 30.0% |
| AAATTTCATTCCTACTTCGT+TGG | - | chr1_1:50847873-50847892 | Msa0026800:intron | 30.0% | |
| !!! | GTAGAGCTCTGTTTTTTATT+TGG | + | chr1_1:50848087-50848106 | None:intergenic | 30.0% |
| TTACCATCAGATGATATTTC+TGG | + | chr1_1:50848174-50848193 | None:intergenic | 30.0% | |
| AGAGTTTAACATTATGCAAC+CGG | + | chr1_1:50848455-50848474 | None:intergenic | 30.0% | |
| GAATAGTAAACACATTGTCT+GGG | - | chr1_1:50848607-50848626 | Msa0026800:CDS | 30.0% | |
| !!! | TGAAAAAGTTTTGGGAATTC+TGG | + | chr1_1:50848655-50848674 | None:intergenic | 30.0% |
| GAGGTTGTTATAAGAGAAAA+AGG | - | chr1_1:50848685-50848704 | Msa0026800:CDS | 30.0% | |
| ! | TGAAGATTTTACAGAAGATG+CGG | + | chr1_1:50848760-50848779 | None:intergenic | 30.0% |
| TCTTCTGTAAAATCTTCACA+AGG | - | chr1_1:50848762-50848781 | Msa0026800:CDS | 30.0% | |
| TGTAAAATCTTCACAAGGAA+GGG | - | chr1_1:50848767-50848786 | Msa0026800:CDS | 30.0% | |
| CTTCATGAATTGACAATGAT+TGG | + | chr1_1:50848886-50848905 | None:intergenic | 30.0% | |
| CAATCATTGTCAATTCATGA+AGG | - | chr1_1:50848884-50848903 | Msa0026800:intron | 30.0% | |
| AAAATGCTAACAATGGCATT+GGG | + | chr1_1:50848993-50849012 | None:intergenic | 30.0% | |
| AAAAATGCTAACAATGGCAT+TGG | + | chr1_1:50848994-50849013 | None:intergenic | 30.0% | |
| GAGATTATAGAAATTCAGGA+AGG | - | chr1_1:50849320-50849339 | Msa0026800:intron | 30.0% | |
| AAGGTTAGAGAGAATTAGTT+AGG | + | chr1_1:50849500-50849519 | None:intergenic | 30.0% | |
| !!! | TTTTTTACAGACCTGTAACA+AGG | + | chr1_1:50849519-50849538 | None:intergenic | 30.0% |
| ATTACAACCGAACATACAAA+TGG | - | chr1_1:50849639-50849658 | Msa0026800:intron | 30.0% | |
| CTAGGTGTATGTAAGAAAAA+TGG | - | chr1_1:50849714-50849733 | Msa0026800:five_prime_UTR | 30.0% | |
| GAACAAAACACAAGATAGAA+AGG | + | chr1_1:50849781-50849800 | None:intergenic | 30.0% | |
| !! | TGTTTTGTTCTTGATTCTAG+AGG | - | chr1_1:50849791-50849810 | Msa0026800:five_prime_UTR | 30.0% |
| CACTTATTACAACAAACCTG+AGG | + | chr1_1:50847460-50847479 | None:intergenic | 35.0% | |
| ATAAGTGTCAATGTCTTTCG+TGG | - | chr1_1:50847473-50847492 | Msa0026800:three_prime_UTR | 35.0% | |
| ! | TATATGGTTTTCCTCCAAAC+TGG | - | chr1_1:50847622-50847641 | Msa0026800:intron | 35.0% |
| ! | ATATGGTTTTCCTCCAAACT+GGG | - | chr1_1:50847623-50847642 | Msa0026800:intron | 35.0% |
| CAAATTGCAGATACACTATC+CGG | + | chr1_1:50847714-50847733 | None:intergenic | 35.0% | |
| AGTCTCGATATATAAGTCGT+TGG | - | chr1_1:50847825-50847844 | Msa0026800:intron | 35.0% | |
| ! | TTTAATTGTTGTTGCAGGTG+AGG | - | chr1_1:50847849-50847868 | Msa0026800:intron | 35.0% |
| GGAAAATGCAAGAAACCATT+CGG | - | chr1_1:50847916-50847935 | Msa0026800:intron | 35.0% | |
| ! | TTGCATTCTTTTGTACCGAA+TGG | + | chr1_1:50847934-50847953 | None:intergenic | 35.0% |
| AAAAGAATGCAAAGCCTCAA+AGG | - | chr1_1:50847942-50847961 | Msa0026800:intron | 35.0% | |
| ! | GTTGATGTTACTTATGGTAG+TGG | - | chr1_1:50847976-50847995 | Msa0026800:CDS | 35.0% |
| AACATTAATAGCACGTAACC+TGG | + | chr1_1:50848019-50848038 | None:intergenic | 35.0% | |
| ! | GTGCTATTAATGTTTGTCAG+CGG | - | chr1_1:50848025-50848044 | Msa0026800:intron | 35.0% |
| CATCCAGAAATATCATCTGA+TGG | - | chr1_1:50848168-50848187 | Msa0026800:intron | 35.0% | |
| ! | GAAGTCTTTTCCTACTTCTT+TGG | - | chr1_1:50848308-50848327 | Msa0026800:CDS | 35.0% |
| GAGTTTAACATTATGCAACC+GGG | + | chr1_1:50848454-50848473 | None:intergenic | 35.0% | |
| ! | ATTCCCTTTTGTGACTGAAT+GGG | + | chr1_1:50848591-50848610 | None:intergenic | 35.0% |
| ! | TATTCCCTTTTGTGACTGAA+TGG | + | chr1_1:50848592-50848611 | None:intergenic | 35.0% |
| GGAATAGTAAACACATTGTC+TGG | - | chr1_1:50848606-50848625 | Msa0026800:CDS | 35.0% | |
| ! | GTCTTCGCTGAAAAAGTTTT+GGG | + | chr1_1:50848663-50848682 | None:intergenic | 35.0% |
| ! | AGTCTTCGCTGAAAAAGTTT+TGG | + | chr1_1:50848664-50848683 | None:intergenic | 35.0% |
| !!! | AAAACTTTTTCAGCGAAGAC+TGG | - | chr1_1:50848663-50848682 | Msa0026800:CDS | 35.0% |
| ! | GAAGATTTTACAGAAGATGC+GGG | + | chr1_1:50848759-50848778 | None:intergenic | 35.0% |
| CTGTAAAATCTTCACAAGGA+AGG | - | chr1_1:50848766-50848785 | Msa0026800:CDS | 35.0% | |
| GGTCTCAAAAAATCAAGATC+TGG | - | chr1_1:50848852-50848871 | Msa0026800:intron | 35.0% | |
| CATGAATGACAATTCATGAG+AGG | + | chr1_1:50848953-50848972 | None:intergenic | 35.0% | |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1_1:50849059-50849078 | Msa0026800:CDS | 35.0% |
| GATATCTAATAATGGCAGCT+GGG | + | chr1_1:50849174-50849193 | None:intergenic | 35.0% | |
| TGATATCTAATAATGGCAGC+TGG | + | chr1_1:50849175-50849194 | None:intergenic | 35.0% | |
| AAGGTGGGTAAGATAAACAA+AGG | - | chr1_1:50849234-50849253 | Msa0026800:intron | 35.0% | |
| AGGTGGGTAAGATAAACAAA+GGG | - | chr1_1:50849235-50849254 | Msa0026800:intron | 35.0% | |
| CCTGAATTTCTATAATCTCG+CGG | + | chr1_1:50849319-50849338 | None:intergenic | 35.0% | |
| AATATATACCAGCCCAATGA+TGG | + | chr1_1:50849380-50849399 | None:intergenic | 35.0% | |
| ATTCTCTCTAACCTTGTTAC+AGG | - | chr1_1:50849505-50849524 | Msa0026800:intron | 35.0% | |
| ACAGGTCTGTAAAAAATGAG+CGG | - | chr1_1:50849523-50849542 | Msa0026800:intron | 35.0% | |
| !! | GGAAAATGGTTTTACTCCTC+AGG | - | chr1_1:50847441-50847460 | Msa0026800:three_prime_UTR | 40.0% |
| AGTTTGAGTGCTAACTGTGA+TGG | - | chr1_1:50847551-50847570 | Msa0026800:three_prime_UTR | 40.0% | |
| ! | TGGTTTCTTGCATTTTCCCA+GGG | + | chr1_1:50847914-50847933 | None:intergenic | 40.0% |
| ! | ATGGTTTCTTGCATTTTCCC+AGG | + | chr1_1:50847915-50847934 | None:intergenic | 40.0% |
| !! | AGTGGGGTTGATGTTACTTA+TGG | - | chr1_1:50847970-50847989 | Msa0026800:CDS | 40.0% |
| AGAAGTGGAAACTCGTGATT+CGG | - | chr1_1:50848113-50848132 | Msa0026800:intron | 40.0% | |
| TCCTACTTCTTTGGTATCAC+CGG | - | chr1_1:50848317-50848336 | Msa0026800:CDS | 40.0% | |
| ACGGGACATGTCAATTAAGA+CGG | - | chr1_1:50848383-50848402 | Msa0026800:CDS | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | - | chr1_1:50848411-50848430 | Msa0026800:CDS | 40.0% | |
| TCTTTATCTGGATGTGTTGC+CGG | + | chr1_1:50848507-50848526 | None:intergenic | 40.0% | |
| ACACCCATTCAGTCACAAAA+GGG | - | chr1_1:50848585-50848604 | Msa0026800:CDS | 40.0% | |
| ACAGTTGAAACAGATGCAGT+TGG | - | chr1_1:50848711-50848730 | Msa0026800:CDS | 40.0% | |
| GATACAAGTCACTCGAACAA+GGG | - | chr1_1:50848789-50848808 | Msa0026800:intron | 40.0% | |
| ! | TCTGTTTCTCCAGAGTCATT+GGG | - | chr1_1:50848831-50848850 | Msa0026800:intron | 40.0% |
| !!! | TTTTTGAGACCCAATGACTC+TGG | + | chr1_1:50848843-50848862 | None:intergenic | 40.0% |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1_1:50849062-50849081 | Msa0026800:CDS | 40.0% |
| ! | TTCTACCTCGCTTAGAGTTT+TGG | - | chr1_1:50849086-50849105 | Msa0026800:CDS | 40.0% |
| ! | CTTTTTACATTTGACCACCC+AGG | - | chr1_1:50849292-50849311 | Msa0026800:intron | 40.0% |
| CCGCGAGATTATAGAAATTC+AGG | - | chr1_1:50849316-50849335 | Msa0026800:intron | 40.0% | |
| GATTAACAGGGCAGAGATTT+AGG | - | chr1_1:50849667-50849686 | Msa0026800:exon | 40.0% | |
| AAAAGAGAGACTGAACAGCA+AGG | + | chr1_1:50849758-50849777 | None:intergenic | 40.0% | |
| TATACCATCGGCAGTCTCAA+GGG | + | chr1_1:50847380-50847399 | None:intergenic | 45.0% | |
| ATATACCATCGGCAGTCTCA+AGG | + | chr1_1:50847381-50847400 | None:intergenic | 45.0% | |
| GTGTCAATGTCTTTCGTGGT+TGG | - | chr1_1:50847477-50847496 | Msa0026800:three_prime_UTR | 45.0% | |
| AGAGCATAGCTTTCCCAGTT+TGG | + | chr1_1:50847639-50847658 | None:intergenic | 45.0% | |
| !! | AGCTATGCTCTAGAATGCAC+CGG | - | chr1_1:50847648-50847667 | Msa0026800:intron | 45.0% |
| ATCAGCTTCAGATCCTTCTC+CGG | + | chr1_1:50847670-50847689 | None:intergenic | 45.0% | |
| TACACTATCCGGAACAGCAT+TGG | + | chr1_1:50847703-50847722 | None:intergenic | 45.0% | |
| AAAGCCTCAAAGGAGATGAG+TGG | - | chr1_1:50847952-50847971 | Msa0026800:intron | 45.0% | |
| AAGCCTCAAAGGAGATGAGT+GGG | - | chr1_1:50847953-50847972 | Msa0026800:intron | 45.0% | |
| ! | GGTAGTGGCGAAAATAGACA+TGG | - | chr1_1:50847991-50848010 | Msa0026800:CDS | 45.0% |
| GCGAAAATAGACATGGTACC+AGG | - | chr1_1:50847998-50848017 | Msa0026800:CDS | 45.0% | |
| ACGAGTTTCCACTTCTGTTG+AGG | + | chr1_1:50848109-50848128 | None:intergenic | 45.0% | |
| TCCGGTGATACCAAAGAAGT+AGG | + | chr1_1:50848321-50848340 | None:intergenic | 45.0% | |
| AGGCATTCCTCGAAGATGAA+CGG | - | chr1_1:50848364-50848383 | Msa0026800:CDS | 45.0% | |
| CGGGACATGTCAATTAAGAC+GGG | - | chr1_1:50848384-50848403 | Msa0026800:CDS | 45.0% | |
| CATGTCAATTAAGACGGGTG+AGG | - | chr1_1:50848389-50848408 | Msa0026800:CDS | 45.0% | |
| GGTGAGGTCAATGTTGTTCA+TGG | - | chr1_1:50848405-50848424 | Msa0026800:CDS | 45.0% | |
| !! | ATGTTGTTCATGGTAGTGGC+AGG | - | chr1_1:50848415-50848434 | Msa0026800:CDS | 45.0% |
| CAGAAGAAACAGCCTGTTAC+CGG | - | chr1_1:50848477-50848496 | Msa0026800:CDS | 45.0% | |
| ! | GTGGAGATCTGGTCTTTATC+TGG | + | chr1_1:50848519-50848538 | None:intergenic | 45.0% |
| ! | ACTCTTTTCCAAGGCTGGTA+AGG | + | chr1_1:50848541-50848560 | None:intergenic | 45.0% |
| ! | TCCTCCATCACTCTTTTCCA+AGG | + | chr1_1:50848550-50848569 | None:intergenic | 45.0% |
| GACACCCATTCAGTCACAAA+AGG | - | chr1_1:50848584-50848603 | Msa0026800:CDS | 45.0% | |
| AGTAAACACATTGTCTGGGC+AGG | - | chr1_1:50848611-50848630 | Msa0026800:CDS | 45.0% | |
| !!! | ACTTTTTCAGCGAAGACTGG+AGG | - | chr1_1:50848666-50848685 | Msa0026800:CDS | 45.0% |
| GGATACAAGTCACTCGAACA+AGG | - | chr1_1:50848788-50848807 | Msa0026800:intron | 45.0% | |
| ! | CAATGACTCTGGAGAAACAG+AGG | + | chr1_1:50848832-50848851 | None:intergenic | 45.0% |
| ! | CTCTGTTTCTCCAGAGTCAT+TGG | - | chr1_1:50848830-50848849 | Msa0026800:intron | 45.0% |
| TTCTATAATCTCGCGGTCCT+GGG | + | chr1_1:50849312-50849331 | None:intergenic | 45.0% | |
| TTTCTATAATCTCGCGGTCC+TGG | + | chr1_1:50849313-50849332 | None:intergenic | 45.0% | |
| GATGGTGAAGAGCCTCTAAA+AGG | + | chr1_1:50849362-50849381 | None:intergenic | 45.0% | |
| TAGAGGCTCTTCACCATCAT+TGG | - | chr1_1:50849364-50849383 | Msa0026800:CDS | 45.0% | |
| AGAGGCTCTTCACCATCATT+GGG | - | chr1_1:50849365-50849384 | Msa0026800:CDS | 45.0% | |
| GGGCAGAGATTTAGGCATAA+TGG | - | chr1_1:50849675-50849694 | Msa0026800:exon | 45.0% | |
| ! | GGCATAATGGAGATGTGAGT+AGG | - | chr1_1:50849688-50849707 | Msa0026800:five_prime_UTR | 45.0% |
| TGAACAGCAAGGATCTGCAA+TGG | + | chr1_1:50849747-50849766 | None:intergenic | 45.0% | |
| GAGGATTCTCTTCCACTGTA+TGG | - | chr1_1:50849810-50849829 | Msa0026800:five_prime_UTR | 45.0% | |
| ! | TTTTCCCTTGAGACTGCCGA+TGG | - | chr1_1:50847373-50847392 | Msa0026800:three_prime_UTR | 50.0% |
| GCATAGCTTTCCCAGTTTGG+AGG | + | chr1_1:50847636-50847655 | None:intergenic | 50.0% | |
| ! | TGATTCGGCCAATGCTGTTC+CGG | - | chr1_1:50847692-50847711 | Msa0026800:intron | 50.0% |
| TCAGGCAACACCAACGAAGT+AGG | + | chr1_1:50847886-50847905 | None:intergenic | 50.0% | |
| AGCCTCAAAGGAGATGAGTG+GGG | - | chr1_1:50847954-50847973 | Msa0026800:intron | 50.0% | |
| AACCCCACTCATCTCCTTTG+AGG | + | chr1_1:50847959-50847978 | None:intergenic | 50.0% | |
| GAGCTCTACCTCAACAGAAG+TGG | - | chr1_1:50848098-50848117 | Msa0026800:intron | 50.0% | |
| GGTATCACCGGATAAGACCA+CGG | - | chr1_1:50848329-50848348 | Msa0026800:CDS | 50.0% | |
| GTATCACCGGATAAGACCAC+GGG | - | chr1_1:50848330-50848349 | Msa0026800:CDS | 50.0% | |
| !! | CAATCTCCCGTGGTCTTATC+CGG | + | chr1_1:50848339-50848358 | None:intergenic | 50.0% |
| GACCACGGGAGATTGCAATA+AGG | - | chr1_1:50848344-50848363 | Msa0026800:CDS | 50.0% | |
| ! | TGCCTTATTGCAATCTCCCG+TGG | + | chr1_1:50848349-50848368 | None:intergenic | 50.0% |
| GGCATTCCTCGAAGATGAAC+GGG | - | chr1_1:50848365-50848384 | Msa0026800:CDS | 50.0% | |
| ACATGTCCCGTTCATCTTCG+AGG | + | chr1_1:50848374-50848393 | None:intergenic | 50.0% | |
| !! | CGGTAACAGGCTGTTTCTTC+TGG | + | chr1_1:50848479-50848498 | None:intergenic | 50.0% |
| ! | CTTTTCCAAGGCTGGTAAGG+TGG | + | chr1_1:50848538-50848557 | None:intergenic | 50.0% |
| ! | CCATCACTCTTTTCCAAGGC+TGG | + | chr1_1:50848546-50848565 | None:intergenic | 50.0% |
| CCAGCCTTGGAAAAGAGTGA+TGG | - | chr1_1:50848543-50848562 | Msa0026800:CDS | 50.0% | |
| GCCTTGGAAAAGAGTGATGG+AGG | - | chr1_1:50848546-50848565 | Msa0026800:CDS | 50.0% | |
| ! | GGAAAAGAGTGATGGAGGAC+TGG | - | chr1_1:50848551-50848570 | Msa0026800:CDS | 50.0% |
| ! | TGGCATTGGGTGAGAAGTGT+TGG | + | chr1_1:50848980-50848999 | None:intergenic | 50.0% |
| TTGCGCCAAAACTCTAAGCG+AGG | + | chr1_1:50849094-50849113 | None:intergenic | 50.0% | |
| GGAGATGTGAGTAGGTAGCT+AGG | - | chr1_1:50849696-50849715 | Msa0026800:five_prime_UTR | 50.0% | |
| !! | GCTCTAGAATGCACCGGAGA+AGG | - | chr1_1:50847654-50847673 | Msa0026800:intron | 55.0% |
| !! | TTCGTTGGTGTTGCCTGACG+AGG | - | chr1_1:50847888-50847907 | Msa0026800:intron | 55.0% |
| CTACGATGACCTCCAGATGC+AGG | + | chr1_1:50848060-50848079 | None:intergenic | 55.0% | |
| CTGCATCTGGAGGTCATCGT+AGG | - | chr1_1:50848058-50848077 | Msa0026800:intron | 55.0% | |
| GCAGGAATAGACGTAGTGCC+CGG | - | chr1_1:50848433-50848452 | Msa0026800:CDS | 55.0% | |
| ACAGCCTGTTACCGGAGATC+CGG | - | chr1_1:50848485-50848504 | Msa0026800:CDS | 55.0% | |
| TGGATGTGTTGCCGGATCTC+CGG | + | chr1_1:50848499-50848518 | None:intergenic | 55.0% | |
| AGGCTGGTAAGGTGGAGATC+TGG | + | chr1_1:50848530-50848549 | None:intergenic | 55.0% | |
| GATCTCCACCTTACCAGCCT+TGG | - | chr1_1:50848530-50848549 | Msa0026800:CDS | 55.0% | |
| TATAATCTCGCGGTCCTGGG+TGG | + | chr1_1:50849309-50849328 | None:intergenic | 55.0% | |
| GCTCTTCACCATCATTGGGC+TGG | - | chr1_1:50849369-50849388 | Msa0026800:CDS | 55.0% | |
| TGTATGGAGCTGAGCTCCCT+TGG | - | chr1_1:50849826-50849845 | Msa0026800:five_prime_UTR | 55.0% | |
| GAGCAGCGCACGCTGGAAAA+TGG | - | chr1_1:50847427-50847446 | Msa0026800:three_prime_UTR | 60.0% | |
| ! | CATTTTCCCAGGGCCTCGTC+AGG | + | chr1_1:50847904-50847923 | None:intergenic | 60.0% |
| AAGCAGCAGCCTGCATCTGG+AGG | - | chr1_1:50848048-50848067 | Msa0026800:intron | 60.0% | |
| GTTGCCGGATCTCCGGTAAC+AGG | + | chr1_1:50848492-50848511 | None:intergenic | 60.0% | |
| GGGAGCTCAGCTCCATACAG+TGG | + | chr1_1:50849825-50849844 | None:intergenic | 60.0% | |
| CATGAACGAGCAGCGCACGC+TGG | - | chr1_1:50847420-50847439 | Msa0026800:three_prime_UTR | 65.0% | |
| GTGTTGCCTGACGAGGCCCT+GGG | - | chr1_1:50847895-50847914 | Msa0026800:intron | 65.0% | |
| CGGAAGCAGCAGCCTGCATC+TGG | - | chr1_1:50848045-50848064 | Msa0026800:intron | 65.0% | |
| ! | GGTGTTGCCTGACGAGGCCC+TGG | - | chr1_1:50847894-50847913 | Msa0026800:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 50847246 | 50849859 | 50847246 | ID=Msa0026800;Name=Msa0026800 |
| chr1_1 | mRNA | 50847246 | 50849859 | 50847246 | ID=Msa0026800-mRNA-1;Parent=Msa0026800;Name=Msa0026800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=175|1|1|1|0.83|0.71|7|377|392 |
| chr1_1 | exon | 50847246 | 50847578 | 50847246 | ID=Msa0026800-mRNA-1:exon:14770;Parent=Msa0026800-mRNA-1 |
| chr1_1 | exon | 50847715 | 50847791 | 50847715 | ID=Msa0026800-mRNA-1:exon:14769;Parent=Msa0026800-mRNA-1 |
| chr1_1 | exon | 50847970 | 50848028 | 50847970 | ID=Msa0026800-mRNA-1:exon:14768;Parent=Msa0026800-mRNA-1 |
| chr1_1 | exon | 50848232 | 50848804 | 50848232 | ID=Msa0026800-mRNA-1:exon:14767;Parent=Msa0026800-mRNA-1 |
| chr1_1 | exon | 50848916 | 50849239 | 50848916 | ID=Msa0026800-mRNA-1:exon:14766;Parent=Msa0026800-mRNA-1 |
| chr1_1 | exon | 50849352 | 50849499 | 50849352 | ID=Msa0026800-mRNA-1:exon:14765;Parent=Msa0026800-mRNA-1 |
| chr1_1 | exon | 50849643 | 50849859 | 50849643 | ID=Msa0026800-mRNA-1:exon:14764;Parent=Msa0026800-mRNA-1 |
| chr1_1 | five_prime_UTR | 50849685 | 50849859 | 50849685 | ID=Msa0026800-mRNA-1:five_prime_utr;Parent=Msa0026800-mRNA-1 |
| chr1_1 | CDS | 50849643 | 50849684 | 50849643 | ID=Msa0026800-mRNA-1:cds;Parent=Msa0026800-mRNA-1 |
| chr1_1 | CDS | 50849352 | 50849499 | 50849352 | ID=Msa0026800-mRNA-1:cds;Parent=Msa0026800-mRNA-1 |
| chr1_1 | CDS | 50848916 | 50849239 | 50848916 | ID=Msa0026800-mRNA-1:cds;Parent=Msa0026800-mRNA-1 |
| chr1_1 | CDS | 50848232 | 50848804 | 50848232 | ID=Msa0026800-mRNA-1:cds;Parent=Msa0026800-mRNA-1 |
| chr1_1 | CDS | 50847970 | 50848028 | 50847970 | ID=Msa0026800-mRNA-1:cds;Parent=Msa0026800-mRNA-1 |
| chr1_1 | CDS | 50847759 | 50847791 | 50847759 | ID=Msa0026800-mRNA-1:cds;Parent=Msa0026800-mRNA-1 |
| chr1_1 | three_prime_UTR | 50847715 | 50847758 | 50847715 | ID=Msa0026800-mRNA-1:three_prime_utr;Parent=Msa0026800-mRNA-1 |
| chr1_1 | three_prime_UTR | 50847246 | 50847578 | 50847246 | ID=Msa0026800-mRNA-1:three_prime_utr;Parent=Msa0026800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
