Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122510 | XP_013468353.1 | 91.649 | 479 | 38 | 1 | 1 | 477 | 1 | 479 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122510 | sp|F4KCE9|KNL2_ARATH | 42.308 | 130 | 69 | 4 | 21 | 146 | 14 | 141 | 5.47e-27 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122510 | A0A072VWG5 | 91.649 | 479 | 38 | 1 | 1 | 477 | 1 | 479 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0122510 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0122510 | 0.800007 | 1.763375e-48 | -8.615850e-47 |
| Msa0026800 | Msa0122510 | 0.830025 | 3.704944e-55 | -8.615850e-47 |
| Msa0091710 | Msa0122510 | 0.813802 | 2.128984e-51 | -8.615850e-47 |
| Msa0122040 | Msa0122510 | 0.880038 | 7.627120e-70 | -8.615850e-47 |
| Msa0122510 | Msa0124060 | 0.816891 | 4.375992e-52 | -8.615850e-47 |
| Msa0122510 | Msa0137880 | 0.806137 | 9.518291e-50 | -8.615850e-47 |
| Msa0122510 | Msa0157290 | 0.800088 | 1.697693e-48 | -8.615850e-47 |
| Msa0122510 | Msa0167010 | 0.816747 | 4.715013e-52 | -8.615850e-47 |
| Msa0122510 | Msa0168500 | 0.806450 | 8.177120e-50 | -8.615850e-47 |
| Msa0122510 | Msa0229230 | 0.813429 | 2.571315e-51 | -8.615850e-47 |
| Msa0122510 | Msa0379770 | 0.802173 | 6.359780e-49 | -8.615850e-47 |
| Msa0122510 | Msa0467490 | 0.808215 | 3.455158e-50 | -8.615850e-47 |
| Msa0122510 | Msa0474520 | 0.821682 | 3.546219e-53 | -8.615850e-47 |
| Msa0122510 | Msa0569200 | 0.803599 | 3.227505e-49 | -8.615850e-47 |
| Msa0122510 | Msa0730430 | 0.809401 | 1.926688e-50 | -8.615850e-47 |
| Msa0122510 | Msa0945110 | 0.806588 | 7.647721e-50 | -8.615850e-47 |
| Msa0122510 | Msa1391770 | 0.826332 | 2.875131e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122510 | MtrunA17_Chr1g0182611 | 91.649 | 479 | 38 | 1 | 1 | 477 | 1 | 479 | 0.0 | 889 |
| Msa0122510 | MtrunA17_Chr1g0182621 | 68.481 | 349 | 98 | 3 | 129 | 477 | 246 | 582 | 2.11e-149 | 439 |
| Msa0122510 | MtrunA17_Chr1g0182621 | 59.146 | 328 | 118 | 4 | 22 | 344 | 26 | 342 | 1.06e-121 | 368 |
| Msa0122510 | MtrunA17_Chr7g0231611 | 35.714 | 140 | 80 | 5 | 1 | 137 | 1 | 133 | 4.08e-18 | 85.5 |
| Msa0122510 | MtrunA17_Chr5g0416851 | 35.714 | 140 | 80 | 5 | 1 | 137 | 1 | 133 | 4.78e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122510 | AT5G02520.1 | 42.308 | 130 | 69 | 4 | 21 | 146 | 14 | 141 | 5.56e-28 | 117 |
| Msa0122510 | AT5G02520.1 | 54.167 | 48 | 22 | 0 | 430 | 477 | 527 | 574 | 3.41e-11 | 65.9 |
| Msa0122510 | AT5G02520.3 | 42.308 | 130 | 69 | 4 | 21 | 146 | 14 | 141 | 7.40e-28 | 117 |
| Msa0122510 | AT5G02520.2 | 42.748 | 131 | 68 | 5 | 21 | 146 | 14 | 142 | 3.81e-27 | 115 |
| Msa0122510 | AT5G02520.2 | 54.167 | 48 | 22 | 0 | 430 | 477 | 528 | 575 | 3.36e-11 | 65.9 |
| Msa0122510 | AT1G58210.1 | 42.391 | 92 | 51 | 1 | 24 | 115 | 64 | 153 | 9.33e-17 | 80.9 |
Find 133 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATGATATTTC+TGG | 0.152483 | 1_3:-49233716 | None:intergenic |
| TTCTACCTCGCTTAGAGTTT+TGG | 0.216024 | 1_3:+49234631 | Msa0122510:CDS |
| CTCTGTTTCTCCAGAGTCAT+TGG | 0.218790 | 1_3:+49234375 | Msa0122510:CDS |
| CGGTAACAGGCTGTTTCTTC+TGG | 0.249872 | 1_3:-49234021 | None:intergenic |
| GATTAACAGGGCAGAGATTT+AGG | 0.252160 | 1_3:+49235212 | Msa0122510:three_prime_UTR |
| ACAAATGGTTTATGATTAAC+AGG | 0.260783 | 1_3:+49235199 | Msa0122510:three_prime_UTR |
| TGCAAGAGAGATAATTAATT+AGG | 0.263678 | 1_3:+49235157 | Msa0122510:three_prime_UTR |
| TCAAACACCTATTTATAATA+TGG | 0.307116 | 1_3:+49234659 | Msa0122510:CDS |
| GAGGTTGTTATAAGAGAAAA+AGG | 0.309998 | 1_3:+49234230 | Msa0122510:CDS |
| TGTCAAGAAATCTTGTTTGA+TGG | 0.311615 | 1_3:+49233277 | Msa0122510:CDS |
| CGGAAGCAGCAGCCTGCATC+TGG | 0.314800 | 1_3:+49233590 | Msa0122510:CDS |
| TAGAGGCTCTTCACCATCAT+TGG | 0.318246 | 1_3:+49234909 | Msa0122510:three_prime_UTR |
| TCACATACCATATTATAAAT+AGG | 0.323614 | 1_3:-49234666 | None:intergenic |
| TCTTTATCTGGATGTGTTGC+CGG | 0.325220 | 1_3:-49234049 | None:intergenic |
| CCGCGAGATTATAGAAATTC+AGG | 0.330860 | 1_3:+49234861 | Msa0122510:CDS |
| TGATTCGGCCAATGCTATTC+CGG | 0.331513 | 1_3:+49233237 | Msa0122510:CDS |
| GAGCAGCGCACGCTGGAAAA+TGG | 0.336004 | 1_3:+49232972 | Msa0122510:CDS |
| AGAGCATAGCTTTCCCAGTT+TGG | 0.337878 | 1_3:-49233181 | None:intergenic |
| GGAATAGTAAACACATTGTC+TGG | 0.341105 | 1_3:+49234151 | Msa0122510:CDS |
| GTGGAGATCTGGTCTTTATC+TGG | 0.363337 | 1_3:-49234061 | None:intergenic |
| AGTGGGGTTGATGTTACTTA+TGG | 0.365193 | 1_3:+49233515 | Msa0122510:CDS |
| TCATAAACCATTTGTATGTT+CGG | 0.368277 | 1_3:-49235191 | None:intergenic |
| AAAGTTTAACATTATGCAAC+CGG | 0.379110 | 1_3:-49233997 | None:intergenic |
| GATGGTGAAGAGCCTCTAAA+AGG | 0.383621 | 1_3:-49234904 | None:intergenic |
| AGAGGCTCTTCACCATCATT+GGG | 0.392278 | 1_3:+49234910 | Msa0122510:three_prime_UTR |
| GCAAGAGAGATAATTAATTA+GGG | 0.398779 | 1_3:+49235158 | Msa0122510:three_prime_UTR |
| CAGAAGAAACAGCCTGTTAC+CGG | 0.399407 | 1_3:+49234022 | Msa0122510:CDS |
| AACCCCACTCATCTCCTTTG+AGG | 0.416310 | 1_3:-49233501 | None:intergenic |
| GGTGTTGCCTGACGAGGCCC+TGG | 0.428575 | 1_3:+49233439 | Msa0122510:CDS |
| GGGCAGAGATTTAGGCATAA+TGG | 0.434677 | 1_3:+49235220 | Msa0122510:three_prime_UTR |
| TCTGTTTCTCCAGAGTCATT+GGG | 0.438436 | 1_3:+49234376 | Msa0122510:CDS |
| CAATCTCCCGTGGTCTTATC+CGG | 0.440181 | 1_3:-49233881 | None:intergenic |
| TCCTACTTCTTTGGTATCAC+CGG | 0.443039 | 1_3:+49233862 | Msa0122510:CDS |
| GGCATTCCTCGAAGATGAAC+GGG | 0.446700 | 1_3:+49233910 | Msa0122510:CDS |
| GGTGAGGTCAATGTTGTTCA+TGG | 0.450542 | 1_3:+49233950 | Msa0122510:CDS |
| TCTAGGTTACTTTATACGAT+TGG | 0.451256 | 1_3:+49231761 | Msa0122510:intron |
| TTCTTGTAGTTTCCGACGAA+CGG | 0.452239 | 1_3:+49231656 | Msa0122510:CDS |
| GACACCCATTCAGTCACAAA+AGG | 0.454994 | 1_3:+49234129 | Msa0122510:CDS |
| GTTGCCGGATCTCCGGTAAC+AGG | 0.455494 | 1_3:-49234034 | None:intergenic |
| ACATGTCCCGTTCATCTTCG+AGG | 0.466823 | 1_3:-49233916 | None:intergenic |
| AGGCTGGTAAGGTGGAGATC+TGG | 0.472582 | 1_3:-49234072 | None:intergenic |
| GGAGATGTGAGTAGGTAGCT+AGG | 0.475346 | 1_3:+49235241 | Msa0122510:three_prime_UTR |
| GATCTCCACCTTACCAGCCT+TGG | 0.478185 | 1_3:+49234075 | Msa0122510:CDS |
| ACAGCCTGTTACCGGAGATC+CGG | 0.478659 | 1_3:+49234030 | Msa0122510:CDS |
| GACCACGGGAGATTGCAATA+AGG | 0.479142 | 1_3:+49233889 | Msa0122510:CDS |
| TGGATGTGTTGCCGGATCTC+CGG | 0.481700 | 1_3:-49234041 | None:intergenic |
| AGGTTACTTTATACGATTGG+TGG | 0.484584 | 1_3:+49231764 | Msa0122510:intron |
| ATCTGAAGCTGATATTGATT+CGG | 0.486466 | 1_3:+49233222 | Msa0122510:CDS |
| ATTACAACCGAACATACAAA+TGG | 0.492525 | 1_3:+49235184 | Msa0122510:three_prime_UTR |
| AATATATACCAGCCCAATGA+TGG | 0.497740 | 1_3:-49234922 | None:intergenic |
| GCTCTAGAATGCACCGGAGA+AGG | 0.500619 | 1_3:+49233199 | Msa0122510:CDS |
| AAATTTCATTCCTACTTCGT+TGG | 0.500725 | 1_3:+49233418 | Msa0122510:CDS |
| GAACAAAACACAAGATAGAA+AGG | 0.502201 | 1_3:-49235323 | None:intergenic |
| GAAGAAATGGTTGCAGTTGG+AGG | 0.503417 | 1_3:-49231618 | None:intergenic |
| GGAAACCGTTTAGCCATCTC+TGG | 0.503556 | 1_3:+49231805 | Msa0122510:CDS |
| AAGTGCAACATCACTCTCAA+TGG | 0.503646 | 1_3:+49231584 | None:intergenic |
| GTCAATGTTGTTCATGGTAG+TGG | 0.510692 | 1_3:+49233956 | Msa0122510:CDS |
| AGAAGTGGAAACTCGTGATT+CGG | 0.511753 | 1_3:+49233658 | Msa0122510:CDS |
| CTGTAAAATCTCCACAAGGA+AGG | 0.520970 | 1_3:+49234311 | Msa0122510:CDS |
| TTGGAAGAAATGGTTGCAGT+TGG | 0.521784 | 1_3:-49231621 | None:intergenic |
| TGGTATATATGTTATCACTA+GGG | 0.526872 | 1_3:+49232938 | Msa0122510:CDS |
| CTACGATGACCTCCAGATGC+AGG | 0.528905 | 1_3:-49233602 | None:intergenic |
| ACACCCATTCAGTCACAAAA+GGG | 0.532185 | 1_3:+49234130 | Msa0122510:CDS |
| GTTGATGTTACTTATGGTAG+TGG | 0.532246 | 1_3:+49233521 | Msa0122510:CDS |
| AATGGTTGCAGTTGGAGGAG+TGG | 0.532867 | 1_3:-49231613 | None:intergenic |
| GGAAAATGCAAGAAACCATT+CGG | 0.536222 | 1_3:+49233461 | Msa0122510:CDS |
| AGATGCCAGAGATGGCTAAA+CGG | 0.536792 | 1_3:-49231810 | None:intergenic |
| AAAAGAATGCAAAGCCTCAA+AGG | 0.537351 | 1_3:+49233487 | Msa0122510:CDS |
| TGTAAAATCTCCACAAGGAA+GGG | 0.537405 | 1_3:+49234312 | Msa0122510:CDS |
| CAAATTGCAGATACACTATC+CGG | 0.539970 | 1_3:-49233256 | None:intergenic |
| TACACTATCCGGAATAGCAT+TGG | 0.541623 | 1_3:-49233245 | None:intergenic |
| AACATTAATAGCACGTAACC+TGG | 0.544388 | 1_3:-49233561 | None:intergenic |
| ATATACCATCGGCAGTCTCA+AGG | 0.545294 | 1_3:-49232923 | None:intergenic |
| GAGCTCTACCTCAACAGAAG+TGG | 0.545818 | 1_3:+49233643 | Msa0122510:CDS |
| AGTAAACACATTGTCTGGGC+AGG | 0.549663 | 1_3:+49234156 | Msa0122510:CDS |
| TTCGTTGGTGTTGCCTGACG+AGG | 0.551013 | 1_3:+49233433 | Msa0122510:CDS |
| GCTCTTCACCATCATTGGGC+TGG | 0.552717 | 1_3:+49234914 | Msa0122510:three_prime_UTR |
| ATGTTGTTCATGGTAGTGGC+AGG | 0.553357 | 1_3:+49233960 | Msa0122510:CDS |
| ATCAGCTTCAGATCCTTCTC+CGG | 0.554639 | 1_3:-49233212 | None:intergenic |
| ATGGTATATATGTTATCACT+AGG | 0.556691 | 1_3:+49232937 | Msa0122510:CDS |
| ACTGCAACCATTTCTTCCAA+TGG | 0.556744 | 1_3:+49231624 | Msa0122510:CDS |
| TCGTCGGAAACTACAAGAAG+TGG | 0.558977 | 1_3:-49231652 | None:intergenic |
| GCGAAAATAGACATGGTACC+AGG | 0.560344 | 1_3:+49233543 | Msa0122510:CDS |
| AAGCCTCAAAGGAGATGAGT+GGG | 0.564158 | 1_3:+49233498 | Msa0122510:CDS |
| GCATAGCTTTCCCAGTTTGG+AGG | 0.565501 | 1_3:-49233178 | None:intergenic |
| AAGCAGCAGCCTGCATCTGG+AGG | 0.566088 | 1_3:+49233593 | Msa0122510:CDS |
| GCAGGAATAGACGTAGTGCC+CGG | 0.566956 | 1_3:+49233978 | Msa0122510:CDS |
| TCAGGCAACACCAACGAAGT+AGG | 0.568738 | 1_3:-49233428 | None:intergenic |
| GGCATAATGGAGATGTGAGT+AGG | 0.571720 | 1_3:+49235233 | Msa0122510:three_prime_UTR |
| GGAAAAGAGTGATGGAGGAC+TGG | 0.572017 | 1_3:+49234096 | Msa0122510:CDS |
| AGGCATTCCTCGAAGATGAA+CGG | 0.572872 | 1_3:+49233909 | Msa0122510:CDS |
| TCCGGTGATACCAAAGAAGT+AGG | 0.573504 | 1_3:-49233863 | None:intergenic |
| GGATACAAGTCACTCGAACA+AGG | 0.576987 | 1_3:+49234333 | Msa0122510:CDS |
| ACGAGTTTCCACTTCTGTTG+AGG | 0.577453 | 1_3:-49233651 | None:intergenic |
| CATGAACGAGCAGCGCACGC+TGG | 0.579334 | 1_3:+49232965 | Msa0122510:CDS |
| GGTATATATGTTATCACTAG+GGG | 0.588021 | 1_3:+49232939 | Msa0122510:CDS |
| CATCCAGAAATATCATCTGA+TGG | 0.590199 | 1_3:+49233713 | Msa0122510:CDS |
| AGCTATGCTCTAGAATGCAC+CGG | 0.591217 | 1_3:+49233193 | Msa0122510:CDS |
| ACGGGACATGTCAATTAAGA+CGG | 0.591957 | 1_3:+49233928 | Msa0122510:CDS |
| CGGGACATGTCAATTAAGAC+GGG | 0.595490 | 1_3:+49233929 | Msa0122510:CDS |
| CGTCGGAAACTACAAGAAGT+GGG | 0.597461 | 1_3:-49231651 | None:intergenic |
| TGACTTGTATCCCTTCCTTG+TGG | 0.599408 | 1_3:-49234322 | None:intergenic |
| TCTGGAAGAGATGCCAGAGA+TGG | 0.599841 | 1_3:-49231818 | None:intergenic |
| CCTGAATTTCTATAATCTCG+CGG | 0.600251 | 1_3:-49234861 | None:intergenic |
| TGCCTTATTGCAATCTCCCG+TGG | 0.601695 | 1_3:-49233891 | None:intergenic |
| GTGAGTAAACAACCGTTCGT+CGG | 0.603870 | 1_3:-49231668 | None:intergenic |
| TATACCATCGGCAGTCTCAA+GGG | 0.605137 | 1_3:-49232922 | None:intergenic |
| GAATAGTAAACACATTGTCT+GGG | 0.607705 | 1_3:+49234152 | Msa0122510:CDS |
| CCAGCCTTGGAAAAGAGTGA+TGG | 0.608271 | 1_3:+49234088 | Msa0122510:CDS |
| GATACAAGTCACTCGAACAA+GGG | 0.609110 | 1_3:+49234334 | Msa0122510:CDS |
| ACAGTTGAAACAGAAGCAGT+TGG | 0.619629 | 1_3:+49234256 | Msa0122510:CDS |
| CTGCATCTGGAGGTCATCGT+AGG | 0.620919 | 1_3:+49233603 | Msa0122510:CDS |
| GCCTTGGAAAAGAGTGATGG+AGG | 0.621071 | 1_3:+49234091 | Msa0122510:CDS |
| AGTGATAACATATATACCAT+CGG | 0.622033 | 1_3:-49232934 | None:intergenic |
| GTATCACCGGATAAGACCAC+GGG | 0.626364 | 1_3:+49233875 | Msa0122510:CDS |
| TGAACAGCAAGGATCTGCAA+TGG | 0.630789 | 1_3:-49235289 | None:intergenic |
| GTGTTGCCTGACGAGGCCCT+GGG | 0.635492 | 1_3:+49233440 | Msa0122510:CDS |
| TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1_3:+49231784 | Msa0122510:CDS |
| CATGTCAATTAAGACGGGTG+AGG | 0.637260 | 1_3:+49233934 | Msa0122510:CDS |
| GTCGGAAACTACAAGAAGTG+GGG | 0.648342 | 1_3:-49231650 | None:intergenic |
| AAAGCCTCAAAGGAGATGAG+TGG | 0.652543 | 1_3:+49233497 | Msa0122510:CDS |
| AAGTTTAACATTATGCAACC+GGG | 0.654972 | 1_3:-49233996 | None:intergenic |
| AAAAGAGAGACTGAACAGCA+AGG | 0.661526 | 1_3:-49235300 | None:intergenic |
| CAATGACTCTGGAGAAACAG+AGG | 0.661940 | 1_3:-49234374 | None:intergenic |
| GTGCTATTAATGTTTGTCAG+CGG | 0.670687 | 1_3:+49233570 | Msa0122510:CDS |
| GGTATCACCGGATAAGACCA+CGG | 0.680385 | 1_3:+49233874 | Msa0122510:CDS |
| TCGGAAACTACAAGAAGTGG+GGG | 0.686416 | 1_3:-49231649 | None:intergenic |
| GAGATTATAGAAATTCAGGA+AGG | 0.686775 | 1_3:+49234865 | Msa0122510:CDS |
| CAAATGGTTTATGATTAACA+GGG | 0.687978 | 1_3:+49235200 | Msa0122510:three_prime_UTR |
| TCTTCTGTAAAATCTCCACA+AGG | 0.702540 | 1_3:+49234307 | Msa0122510:CDS |
| GGTAGTGGCGAAAATAGACA+TGG | 0.702887 | 1_3:+49233536 | Msa0122510:CDS |
| TTGCGCCAAAACTCTAAGCG+AGG | 0.703796 | 1_3:-49234636 | None:intergenic |
| AGCCTCAAAGGAGATGAGTG+GGG | 0.721063 | 1_3:+49233499 | Msa0122510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAATATTTGTAGA+AGG | - | chr1_3:49232292-49232311 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAAAATTTGCA+AGG | - | chr1_3:49232321-49232340 | None:intergenic | 10.0% |
| !! | ATTATTAAAACAAAACAATA+AGG | - | chr1_3:49232352-49232371 | None:intergenic | 10.0% |
| !!! | ATTTCAAAGAATTTTTTATA+TGG | + | chr1_3:49233151-49233170 | Msa0122510:CDS | 10.0% |
| !!! | TAAAATTATCATTTTTGAGT+CGG | + | chr1_3:49232072-49232091 | Msa0122510:intron | 15.0% |
| !! | AATAAATCCTAGATATAAAA+TGG | - | chr1_3:49234751-49234770 | None:intergenic | 15.0% |
| !!! | TTTTAAGTTAGATGAAAACT+TGG | + | chr1_3:49231991-49232010 | Msa0122510:intron | 20.0% |
| !! | AAAAAGAAAAATTGTTAAGC+AGG | - | chr1_3:49232188-49232207 | None:intergenic | 20.0% |
| !! | ATACTTTATGTTGTAAATCA+GGG | + | chr1_3:49232842-49232861 | Msa0122510:intron | 20.0% |
| !!! | ACATCATATCTTTTGATAAT+AGG | - | chr1_3:49232897-49232916 | None:intergenic | 20.0% |
| !!! | GGTTTAATATTTTTTCTCTT+AGG | - | chr1_3:49234283-49234302 | None:intergenic | 20.0% |
| !! | ATATACAAAAATGCTAACAA+TGG | - | chr1_3:49234545-49234564 | None:intergenic | 20.0% |
| !!! | ATTGTTAGCATTTTTGTATA+TGG | + | chr1_3:49234544-49234563 | Msa0122510:intron | 20.0% |
| !! | TCAAACACCTATTTATAATA+TGG | + | chr1_3:49234659-49234678 | Msa0122510:CDS | 20.0% |
| !! | TCACATACCATATTATAAAT+AGG | - | chr1_3:49234669-49234688 | None:intergenic | 20.0% |
| !! | ATGCATATGATATCTAATAA+TGG | - | chr1_3:49234727-49234746 | None:intergenic | 20.0% |
| !!! | TAGGATTTATTTTCTCTTTA+AGG | + | chr1_3:49234760-49234779 | Msa0122510:intron | 20.0% |
| !!! | ATTTATTTTCTCTTTAAGGT+GGG | + | chr1_3:49234764-49234783 | Msa0122510:intron | 20.0% |
| !!! | ACAATCTATAATCTTTTAAC+TGG | + | chr1_3:49234812-49234831 | Msa0122510:intron | 20.0% |
| ! | TGATAGAGATAAGAATAAGA+AGG | - | chr1_3:49231712-49231731 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTTTTCCTTTCT+AGG | + | chr1_3:49231744-49231763 | Msa0122510:intron | 25.0% |
| !!! | TTTTTTACCATGTTTGACAA+TGG | + | chr1_3:49232205-49232224 | Msa0122510:intron | 25.0% |
| !! | TATTTTACCATTGTCAAACA+TGG | - | chr1_3:49232215-49232234 | None:intergenic | 25.0% |
| ! | ATAAAGCTTCAATATGCAAA+CGG | + | chr1_3:49232232-49232251 | Msa0122510:intron | 25.0% |
| ! | AGGACTAAAATGAATATTAG+AGG | + | chr1_3:49232423-49232442 | Msa0122510:intron | 25.0% |
| ! | GGACTAAAATGAATATTAGA+GGG | + | chr1_3:49232424-49232443 | Msa0122510:intron | 25.0% |
| ! | AAATCTGTTCATATTGAAGT+TGG | - | chr1_3:49232451-49232470 | None:intergenic | 25.0% |
| ! | ACTAGCATTTATACATGAAA+AGG | - | chr1_3:49232731-49232750 | None:intergenic | 25.0% |
| ! | CATACTTTATGTTGTAAATC+AGG | + | chr1_3:49232841-49232860 | Msa0122510:intron | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+TGG | - | chr1_3:49232892-49232911 | None:intergenic | 25.0% |
| ! | AGTGATAACATATATACCAT+CGG | - | chr1_3:49232937-49232956 | None:intergenic | 25.0% |
| ! | ATGGTATATATGTTATCACT+AGG | + | chr1_3:49232937-49232956 | Msa0122510:CDS | 25.0% |
| ! | TGGTATATATGTTATCACTA+GGG | + | chr1_3:49232938-49232957 | Msa0122510:CDS | 25.0% |
| ! | AAACTCAACGTCATAAAATA+AGG | - | chr1_3:49233081-49233100 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTGCCTACTTTA+TGG | + | chr1_3:49233124-49233143 | Msa0122510:intron | 25.0% |
| ! | TTGAAATCTAACCATAAAGT+AGG | - | chr1_3:49233138-49233157 | None:intergenic | 25.0% |
| !!! | TTGTTTGATGGTAAGTATTT+TGG | + | chr1_3:49233289-49233308 | Msa0122510:intron | 25.0% |
| ! | AAAGTTTAACATTATGCAAC+CGG | - | chr1_3:49234000-49234019 | None:intergenic | 25.0% |
| ! | AGGTTGTTATAAGAGAAAAA+GGG | + | chr1_3:49234231-49234250 | Msa0122510:CDS | 25.0% |
| ! | AAAGAATAGAGTGAAGTAAA+TGG | - | chr1_3:49234582-49234601 | None:intergenic | 25.0% |
| ! | TTCACTCTATTCTTTATGTT+TGG | + | chr1_3:49234587-49234606 | Msa0122510:intron | 25.0% |
| ! | TCACTCTATTCTTTATGTTT+GGG | + | chr1_3:49234588-49234607 | Msa0122510:intron | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | + | chr1_3:49234600-49234619 | Msa0122510:intron | 25.0% |
| !! | ATGCATACCATTTTATATCT+AGG | + | chr1_3:49234741-49234760 | Msa0122510:intron | 25.0% |
| !!! | GATTTATTTTCTCTTTAAGG+TGG | + | chr1_3:49234763-49234782 | Msa0122510:intron | 25.0% |
| !! | TCTTTTATATCACCTTTTAG+AGG | + | chr1_3:49234892-49234911 | Msa0122510:three_prime_UTR | 25.0% |
| !! | TTTTTATCAGAACTATCATG+TGG | + | chr1_3:49234976-49234995 | Msa0122510:intron | 25.0% |
| !!! | TTTTTTACAGACATGTAACA+AGG | - | chr1_3:49235064-49235083 | None:intergenic | 25.0% |
| ! | TGCAAGAGAGATAATTAATT+AGG | + | chr1_3:49235157-49235176 | Msa0122510:three_prime_UTR | 25.0% |
| ! | GCAAGAGAGATAATTAATTA+GGG | + | chr1_3:49235158-49235177 | Msa0122510:three_prime_UTR | 25.0% |
| ! | TCATAAACCATTTGTATGTT+CGG | - | chr1_3:49235194-49235213 | None:intergenic | 25.0% |
| ! | ACAAATGGTTTATGATTAAC+AGG | + | chr1_3:49235199-49235218 | Msa0122510:three_prime_UTR | 25.0% |
| ! | CAAATGGTTTATGATTAACA+GGG | + | chr1_3:49235200-49235219 | Msa0122510:three_prime_UTR | 25.0% |
| AAAGTAACCTAGAAAGGAAA+AGG | - | chr1_3:49231754-49231773 | None:intergenic | 30.0% | |
| TCGTATAAAGTAACCTAGAA+AGG | - | chr1_3:49231760-49231779 | None:intergenic | 30.0% | |
| ! | TCTAGGTTACTTTATACGAT+TGG | + | chr1_3:49231761-49231780 | Msa0122510:intron | 30.0% |
| TAGCTCATGTCTAAATTGTT+AGG | + | chr1_3:49231896-49231915 | Msa0122510:intron | 30.0% | |
| AGGCAATTAAAGTGAATAAG+TGG | - | chr1_3:49232168-49232187 | None:intergenic | 30.0% | |
| ! | CAATATGAACAGATTTTGCA+AGG | + | chr1_3:49232455-49232474 | Msa0122510:intron | 30.0% |
| !! | AATTTAGCACCGTTTGATTT+TGG | - | chr1_3:49232502-49232521 | None:intergenic | 30.0% |
| CTCTCAATTACTATCATAAG+AGG | + | chr1_3:49232796-49232815 | Msa0122510:intron | 30.0% | |
| GGTATATATGTTATCACTAG+GGG | + | chr1_3:49232939-49232958 | Msa0122510:CDS | 30.0% | |
| ! | ATCTGAAGCTGATATTGATT+CGG | + | chr1_3:49233222-49233241 | Msa0122510:CDS | 30.0% |
| ! | TGTCAAGAAATCTTGTTTGA+TGG | + | chr1_3:49233277-49233296 | Msa0122510:CDS | 30.0% |
| !! | GTCAAAACATTTCTAAGACA+TGG | - | chr1_3:49233338-49233357 | None:intergenic | 30.0% |
| !!! | TTGGTTTTAATTGTTGTTGC+AGG | + | chr1_3:49233389-49233408 | Msa0122510:intron | 30.0% |
| AAATTTCATTCCTACTTCGT+TGG | + | chr1_3:49233418-49233437 | Msa0122510:CDS | 30.0% | |
| !!! | GTAGAGCTCTGTTTTTTATT+TGG | - | chr1_3:49233632-49233651 | None:intergenic | 30.0% |
| TTACCATCAGATGATATTTC+TGG | - | chr1_3:49233719-49233738 | None:intergenic | 30.0% | |
| AAGTTTAACATTATGCAACC+GGG | - | chr1_3:49233999-49234018 | None:intergenic | 30.0% | |
| GAATAGTAAACACATTGTCT+GGG | + | chr1_3:49234152-49234171 | Msa0122510:CDS | 30.0% | |
| !!! | TGAAAAAGTTTTGGGAATTC+TGG | - | chr1_3:49234200-49234219 | None:intergenic | 30.0% |
| GAGGTTGTTATAAGAGAAAA+AGG | + | chr1_3:49234230-49234249 | Msa0122510:CDS | 30.0% | |
| CTTCATGAATTGACAATGAT+TGG | - | chr1_3:49234431-49234450 | None:intergenic | 30.0% | |
| CAATCATTGTCAATTCATGA+AGG | + | chr1_3:49234429-49234448 | Msa0122510:intron | 30.0% | |
| AAAATGCTAACAATGGCATT+GGG | - | chr1_3:49234538-49234557 | None:intergenic | 30.0% | |
| AAAAATGCTAACAATGGCAT+TGG | - | chr1_3:49234539-49234558 | None:intergenic | 30.0% | |
| GAGATTATAGAAATTCAGGA+AGG | + | chr1_3:49234865-49234884 | Msa0122510:CDS | 30.0% | |
| AAGGTTAGAGAGAATTAGTT+AGG | - | chr1_3:49235045-49235064 | None:intergenic | 30.0% | |
| ACATGTCTGTAAAAAATGAG+CGG | + | chr1_3:49235068-49235087 | Msa0122510:intron | 30.0% | |
| ATTACAACCGAACATACAAA+TGG | + | chr1_3:49235184-49235203 | Msa0122510:three_prime_UTR | 30.0% | |
| CTAGGTGTATGTAAGAAAAA+TGG | + | chr1_3:49235259-49235278 | Msa0122510:three_prime_UTR | 30.0% | |
| GAACAAAACACAAGATAGAA+AGG | - | chr1_3:49235326-49235345 | None:intergenic | 30.0% | |
| !! | TGTTTTGTTCTTGATTCTAG+AGG | + | chr1_3:49235336-49235355 | Msa0122510:three_prime_UTR | 30.0% |
| ATAAGAAGGATGAGAGTGAA+GGG | - | chr1_3:49231698-49231717 | None:intergenic | 35.0% | |
| AATAAGAAGGATGAGAGTGA+AGG | - | chr1_3:49231699-49231718 | None:intergenic | 35.0% | |
| ! | AGGTTACTTTATACGATTGG+TGG | + | chr1_3:49231764-49231783 | Msa0122510:intron | 35.0% |
| AAGTGAAAACCCTTACTTTC+TGG | - | chr1_3:49231839-49231858 | None:intergenic | 35.0% | |
| GTTAGATGAAAACTTGGCTT+AGG | + | chr1_3:49231997-49232016 | Msa0122510:intron | 35.0% | |
| ACAATGCATTGCAATATGCA+GGG | + | chr1_3:49232118-49232137 | Msa0122510:intron | 35.0% | |
| AAGTGAATAAGTGGAGAATC+CGG | - | chr1_3:49232159-49232178 | None:intergenic | 35.0% | |
| GATTTGTGTCTCTCAAAAGA+AGG | + | chr1_3:49232403-49232422 | Msa0122510:intron | 35.0% | |
| ACTAACAGTTAGCAGTTTGT+TGG | + | chr1_3:49232650-49232669 | Msa0122510:intron | 35.0% | |
| CACTTATTACAACAAACCTG+AGG | - | chr1_3:49233005-49233024 | None:intergenic | 35.0% | |
| ATAAGTGTCAATGTCTTTCG+TGG | + | chr1_3:49233018-49233037 | Msa0122510:intron | 35.0% | |
| ! | TATATGGTTTTCCTCCAAAC+TGG | + | chr1_3:49233167-49233186 | Msa0122510:CDS | 35.0% |
| ! | ATATGGTTTTCCTCCAAACT+GGG | + | chr1_3:49233168-49233187 | Msa0122510:CDS | 35.0% |
| CAAATTGCAGATACACTATC+CGG | - | chr1_3:49233259-49233278 | None:intergenic | 35.0% | |
| AGTCTCGATATATAAGTCGT+TGG | + | chr1_3:49233370-49233389 | Msa0122510:intron | 35.0% | |
| ! | TTTAATTGTTGTTGCAGGTG+AGG | + | chr1_3:49233394-49233413 | Msa0122510:intron | 35.0% |
| GGAAAATGCAAGAAACCATT+CGG | + | chr1_3:49233461-49233480 | Msa0122510:CDS | 35.0% | |
| ! | TTGCATTCTTTTGTACCGAA+TGG | - | chr1_3:49233479-49233498 | None:intergenic | 35.0% |
| AAAAGAATGCAAAGCCTCAA+AGG | + | chr1_3:49233487-49233506 | Msa0122510:CDS | 35.0% | |
| ! | GTTGATGTTACTTATGGTAG+TGG | + | chr1_3:49233521-49233540 | Msa0122510:CDS | 35.0% |
| AACATTAATAGCACGTAACC+TGG | - | chr1_3:49233564-49233583 | None:intergenic | 35.0% | |
| ! | GTGCTATTAATGTTTGTCAG+CGG | + | chr1_3:49233570-49233589 | Msa0122510:CDS | 35.0% |
| CATCCAGAAATATCATCTGA+TGG | + | chr1_3:49233713-49233732 | Msa0122510:CDS | 35.0% | |
| ! | GAAGTCTTTTCCTACTTCTT+TGG | + | chr1_3:49233853-49233872 | Msa0122510:CDS | 35.0% |
| ! | ATTCCCTTTTGTGACTGAAT+GGG | - | chr1_3:49234136-49234155 | None:intergenic | 35.0% |
| ! | TATTCCCTTTTGTGACTGAA+TGG | - | chr1_3:49234137-49234156 | None:intergenic | 35.0% |
| GGAATAGTAAACACATTGTC+TGG | + | chr1_3:49234151-49234170 | Msa0122510:CDS | 35.0% | |
| ! | GTCTTCGCTGAAAAAGTTTT+GGG | - | chr1_3:49234208-49234227 | None:intergenic | 35.0% |
| ! | AGTCTTCGCTGAAAAAGTTT+TGG | - | chr1_3:49234209-49234228 | None:intergenic | 35.0% |
| !!! | AAAACTTTTTCAGCGAAGAC+TGG | + | chr1_3:49234208-49234227 | Msa0122510:CDS | 35.0% |
| ! | TGGAGATTTTACAGAAGATG+CGG | - | chr1_3:49234305-49234324 | None:intergenic | 35.0% |
| TCTTCTGTAAAATCTCCACA+AGG | + | chr1_3:49234307-49234326 | Msa0122510:CDS | 35.0% | |
| TGTAAAATCTCCACAAGGAA+GGG | + | chr1_3:49234312-49234331 | Msa0122510:CDS | 35.0% | |
| GGTCTCAAAAAATCAAGATC+TGG | + | chr1_3:49234397-49234416 | Msa0122510:CDS | 35.0% | |
| CATGAATGACAATTCATGAG+AGG | - | chr1_3:49234498-49234517 | None:intergenic | 35.0% | |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | + | chr1_3:49234604-49234623 | Msa0122510:intron | 35.0% |
| GATATCTAATAATGGCAGCT+GGG | - | chr1_3:49234719-49234738 | None:intergenic | 35.0% | |
| TGATATCTAATAATGGCAGC+TGG | - | chr1_3:49234720-49234739 | None:intergenic | 35.0% | |
| AAGGTGGGTAAGATAAACAA+AGG | + | chr1_3:49234779-49234798 | Msa0122510:intron | 35.0% | |
| AGGTGGGTAAGATAAACAAA+GGG | + | chr1_3:49234780-49234799 | Msa0122510:intron | 35.0% | |
| CCTGAATTTCTATAATCTCG+CGG | - | chr1_3:49234864-49234883 | None:intergenic | 35.0% | |
| AATATATACCAGCCCAATGA+TGG | - | chr1_3:49234925-49234944 | None:intergenic | 35.0% | |
| TTGGAAGAAATGGTTGCAGT+TGG | - | chr1_3:49231624-49231643 | None:intergenic | 40.0% | |
| ACTGCAACCATTTCTTCCAA+TGG | + | chr1_3:49231624-49231643 | Msa0122510:CDS | 40.0% | |
| TTCTTGTAGTTTCCGACGAA+CGG | + | chr1_3:49231656-49231675 | Msa0122510:CDS | 40.0% | |
| TAAGAAGGATGAGAGTGAAG+GGG | - | chr1_3:49231697-49231716 | None:intergenic | 40.0% | |
| TGGCTCGTTAAATCATCTCA+AGG | + | chr1_3:49231784-49231803 | Msa0122510:CDS | 40.0% | |
| GCATCTCTTCCAGAAAGTAA+GGG | + | chr1_3:49231827-49231846 | Msa0122510:intron | 40.0% | |
| GTTAGGTTAGAGTTCCAACT+AGG | + | chr1_3:49231913-49231932 | Msa0122510:intron | 40.0% | |
| TGAGCATAACTCACTTGGTA+GGG | + | chr1_3:49232095-49232114 | Msa0122510:intron | 40.0% | |
| GACAATGCATTGCAATATGC+AGG | + | chr1_3:49232117-49232136 | Msa0122510:intron | 40.0% | |
| CAATGCATTGCAATATGCAG+GGG | + | chr1_3:49232119-49232138 | Msa0122510:intron | 40.0% | |
| AGTGAATAAGTGGAGAATCC+GGG | - | chr1_3:49232158-49232177 | None:intergenic | 40.0% | |
| CAAACTCTTGATATCTGCTG+CGG | - | chr1_3:49232261-49232280 | None:intergenic | 40.0% | |
| ! | CAAACGGTGCTAAATTTGCA+AGG | + | chr1_3:49232506-49232525 | Msa0122510:intron | 40.0% |
| TTGTGACACTTCAGCAGAAA+TGG | + | chr1_3:49232625-49232644 | Msa0122510:intron | 40.0% | |
| !! | GGAAAATGGTTTTACTCCTC+AGG | + | chr1_3:49232986-49233005 | Msa0122510:CDS | 40.0% |
| AGTTTGAGTGCTAACTGTGA+TGG | + | chr1_3:49233096-49233115 | Msa0122510:intron | 40.0% | |
| TACACTATCCGGAATAGCAT+TGG | - | chr1_3:49233248-49233267 | None:intergenic | 40.0% | |
| ! | TGGTTTCTTGCATTTTCCCA+GGG | - | chr1_3:49233459-49233478 | None:intergenic | 40.0% |
| ! | ATGGTTTCTTGCATTTTCCC+AGG | - | chr1_3:49233460-49233479 | None:intergenic | 40.0% |
| !! | AGTGGGGTTGATGTTACTTA+TGG | + | chr1_3:49233515-49233534 | Msa0122510:CDS | 40.0% |
| AGAAGTGGAAACTCGTGATT+CGG | + | chr1_3:49233658-49233677 | Msa0122510:CDS | 40.0% | |
| TCCTACTTCTTTGGTATCAC+CGG | + | chr1_3:49233862-49233881 | Msa0122510:CDS | 40.0% | |
| ACGGGACATGTCAATTAAGA+CGG | + | chr1_3:49233928-49233947 | Msa0122510:CDS | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | + | chr1_3:49233956-49233975 | Msa0122510:CDS | 40.0% | |
| TCTTTATCTGGATGTGTTGC+CGG | - | chr1_3:49234052-49234071 | None:intergenic | 40.0% | |
| ACACCCATTCAGTCACAAAA+GGG | + | chr1_3:49234130-49234149 | Msa0122510:CDS | 40.0% | |
| ACAGTTGAAACAGAAGCAGT+TGG | + | chr1_3:49234256-49234275 | Msa0122510:CDS | 40.0% | |
| ! | GGAGATTTTACAGAAGATGC+GGG | - | chr1_3:49234304-49234323 | None:intergenic | 40.0% |
| CTGTAAAATCTCCACAAGGA+AGG | + | chr1_3:49234311-49234330 | Msa0122510:CDS | 40.0% | |
| GATACAAGTCACTCGAACAA+GGG | + | chr1_3:49234334-49234353 | Msa0122510:CDS | 40.0% | |
| ! | TCTGTTTCTCCAGAGTCATT+GGG | + | chr1_3:49234376-49234395 | Msa0122510:CDS | 40.0% |
| !!! | TTTTTGAGACCCAATGACTC+TGG | - | chr1_3:49234388-49234407 | None:intergenic | 40.0% |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | + | chr1_3:49234607-49234626 | Msa0122510:intron | 40.0% |
| ! | TTCTACCTCGCTTAGAGTTT+TGG | + | chr1_3:49234631-49234650 | Msa0122510:CDS | 40.0% |
| ! | CTTTTTACATTTGACCACCC+AGG | + | chr1_3:49234837-49234856 | Msa0122510:intron | 40.0% |
| CCGCGAGATTATAGAAATTC+AGG | + | chr1_3:49234861-49234880 | Msa0122510:CDS | 40.0% | |
| GATTAACAGGGCAGAGATTT+AGG | + | chr1_3:49235212-49235231 | Msa0122510:three_prime_UTR | 40.0% | |
| AAAAGAGAGACTGAACAGCA+AGG | - | chr1_3:49235303-49235322 | None:intergenic | 40.0% | |
| GAAGAAATGGTTGCAGTTGG+AGG | - | chr1_3:49231621-49231640 | None:intergenic | 45.0% | |
| TCGGAAACTACAAGAAGTGG+GGG | - | chr1_3:49231652-49231671 | None:intergenic | 45.0% | |
| GTCGGAAACTACAAGAAGTG+GGG | - | chr1_3:49231653-49231672 | None:intergenic | 45.0% | |
| CGTCGGAAACTACAAGAAGT+GGG | - | chr1_3:49231654-49231673 | None:intergenic | 45.0% | |
| TCGTCGGAAACTACAAGAAG+TGG | - | chr1_3:49231655-49231674 | None:intergenic | 45.0% | |
| GTGAGTAAACAACCGTTCGT+CGG | - | chr1_3:49231671-49231690 | None:intergenic | 45.0% | |
| AGATGCCAGAGATGGCTAAA+CGG | - | chr1_3:49231813-49231832 | None:intergenic | 45.0% | |
| GGCATCTCTTCCAGAAAGTA+AGG | + | chr1_3:49231826-49231845 | Msa0122510:intron | 45.0% | |
| GTGAGCATAACTCACTTGGT+AGG | + | chr1_3:49232094-49232113 | Msa0122510:intron | 45.0% | |
| GTGAATAAGTGGAGAATCCG+GGG | - | chr1_3:49232157-49232176 | None:intergenic | 45.0% | |
| CGCCAAGTGCCAAAATCAAA+CGG | + | chr1_3:49232490-49232509 | Msa0122510:intron | 45.0% | |
| !! | CACCGTTTGATTTTGGCACT+TGG | - | chr1_3:49232495-49232514 | None:intergenic | 45.0% |
| TGCTGAGTTAGTGGTGACAA+GGG | - | chr1_3:49232605-49232624 | None:intergenic | 45.0% | |
| ATGCTGAGTTAGTGGTGACA+AGG | - | chr1_3:49232606-49232625 | None:intergenic | 45.0% | |
| GTGTCACAATGCTGAGTTAG+TGG | - | chr1_3:49232614-49232633 | None:intergenic | 45.0% | |
| TATACCATCGGCAGTCTCAA+GGG | - | chr1_3:49232925-49232944 | None:intergenic | 45.0% | |
| ATATACCATCGGCAGTCTCA+AGG | - | chr1_3:49232926-49232945 | None:intergenic | 45.0% | |
| GTGTCAATGTCTTTCGTGGT+TGG | + | chr1_3:49233022-49233041 | Msa0122510:intron | 45.0% | |
| AGAGCATAGCTTTCCCAGTT+TGG | - | chr1_3:49233184-49233203 | None:intergenic | 45.0% | |
| !! | AGCTATGCTCTAGAATGCAC+CGG | + | chr1_3:49233193-49233212 | Msa0122510:CDS | 45.0% |
| ATCAGCTTCAGATCCTTCTC+CGG | - | chr1_3:49233215-49233234 | None:intergenic | 45.0% | |
| ! | TGATTCGGCCAATGCTATTC+CGG | + | chr1_3:49233237-49233256 | Msa0122510:CDS | 45.0% |
| AAAGCCTCAAAGGAGATGAG+TGG | + | chr1_3:49233497-49233516 | Msa0122510:CDS | 45.0% | |
| AAGCCTCAAAGGAGATGAGT+GGG | + | chr1_3:49233498-49233517 | Msa0122510:CDS | 45.0% | |
| ! | GGTAGTGGCGAAAATAGACA+TGG | + | chr1_3:49233536-49233555 | Msa0122510:CDS | 45.0% |
| GCGAAAATAGACATGGTACC+AGG | + | chr1_3:49233543-49233562 | Msa0122510:CDS | 45.0% | |
| ACGAGTTTCCACTTCTGTTG+AGG | - | chr1_3:49233654-49233673 | None:intergenic | 45.0% | |
| TCCGGTGATACCAAAGAAGT+AGG | - | chr1_3:49233866-49233885 | None:intergenic | 45.0% | |
| AGGCATTCCTCGAAGATGAA+CGG | + | chr1_3:49233909-49233928 | Msa0122510:CDS | 45.0% | |
| CGGGACATGTCAATTAAGAC+GGG | + | chr1_3:49233929-49233948 | Msa0122510:CDS | 45.0% | |
| CATGTCAATTAAGACGGGTG+AGG | + | chr1_3:49233934-49233953 | Msa0122510:CDS | 45.0% | |
| GGTGAGGTCAATGTTGTTCA+TGG | + | chr1_3:49233950-49233969 | Msa0122510:CDS | 45.0% | |
| !! | ATGTTGTTCATGGTAGTGGC+AGG | + | chr1_3:49233960-49233979 | Msa0122510:CDS | 45.0% |
| CAGAAGAAACAGCCTGTTAC+CGG | + | chr1_3:49234022-49234041 | Msa0122510:CDS | 45.0% | |
| ! | GTGGAGATCTGGTCTTTATC+TGG | - | chr1_3:49234064-49234083 | None:intergenic | 45.0% |
| ! | ACTCTTTTCCAAGGCTGGTA+AGG | - | chr1_3:49234086-49234105 | None:intergenic | 45.0% |
| ! | TCCTCCATCACTCTTTTCCA+AGG | - | chr1_3:49234095-49234114 | None:intergenic | 45.0% |
| GACACCCATTCAGTCACAAA+AGG | + | chr1_3:49234129-49234148 | Msa0122510:CDS | 45.0% | |
| AGTAAACACATTGTCTGGGC+AGG | + | chr1_3:49234156-49234175 | Msa0122510:CDS | 45.0% | |
| !!! | ACTTTTTCAGCGAAGACTGG+AGG | + | chr1_3:49234211-49234230 | Msa0122510:CDS | 45.0% |
| ! | TGACTTGTATCCCTTCCTTG+TGG | - | chr1_3:49234325-49234344 | None:intergenic | 45.0% |
| GGATACAAGTCACTCGAACA+AGG | + | chr1_3:49234333-49234352 | Msa0122510:CDS | 45.0% | |
| ! | CAATGACTCTGGAGAAACAG+AGG | - | chr1_3:49234377-49234396 | None:intergenic | 45.0% |
| ! | CTCTGTTTCTCCAGAGTCAT+TGG | + | chr1_3:49234375-49234394 | Msa0122510:CDS | 45.0% |
| TTCTATAATCTCGCGGTCCT+GGG | - | chr1_3:49234857-49234876 | None:intergenic | 45.0% | |
| TTTCTATAATCTCGCGGTCC+TGG | - | chr1_3:49234858-49234877 | None:intergenic | 45.0% | |
| GATGGTGAAGAGCCTCTAAA+AGG | - | chr1_3:49234907-49234926 | None:intergenic | 45.0% | |
| TAGAGGCTCTTCACCATCAT+TGG | + | chr1_3:49234909-49234928 | Msa0122510:three_prime_UTR | 45.0% | |
| AGAGGCTCTTCACCATCATT+GGG | + | chr1_3:49234910-49234929 | Msa0122510:three_prime_UTR | 45.0% | |
| GGGCAGAGATTTAGGCATAA+TGG | + | chr1_3:49235220-49235239 | Msa0122510:three_prime_UTR | 45.0% | |
| ! | GGCATAATGGAGATGTGAGT+AGG | + | chr1_3:49235233-49235252 | Msa0122510:three_prime_UTR | 45.0% |
| TGAACAGCAAGGATCTGCAA+TGG | - | chr1_3:49235292-49235311 | None:intergenic | 45.0% | |
| !!! | AATTTTTTTTTTTTTACTTT+TGG | + | chr1_3:49232325-49232344 | Msa0122510:intron | 5.0% |
| !! | AAAAATTAAAAATAAATTAC+AGG | + | chr1_3:49232532-49232551 | Msa0122510:intron | 5.0% |
| !! | AAAATTAAAAATAAATTACA+GGG | + | chr1_3:49232533-49232552 | Msa0122510:intron | 5.0% |
| AATGGTTGCAGTTGGAGGAG+TGG | - | chr1_3:49231616-49231635 | None:intergenic | 50.0% | |
| GGAAACCGTTTAGCCATCTC+TGG | + | chr1_3:49231805-49231824 | Msa0122510:CDS | 50.0% | |
| TCTGGAAGAGATGCCAGAGA+TGG | - | chr1_3:49231821-49231840 | None:intergenic | 50.0% | |
| ACACACTGTGAGGTCCTAGT+TGG | - | chr1_3:49231930-49231949 | None:intergenic | 50.0% | |
| AAACTCGCACACACACTGTG+AGG | - | chr1_3:49231940-49231959 | None:intergenic | 50.0% | |
| GTCGGTGAGCATAACTCACT+TGG | + | chr1_3:49232090-49232109 | Msa0122510:intron | 50.0% | |
| ! | TTTTCCCTTGAGACTGCCGA+TGG | + | chr1_3:49232918-49232937 | Msa0122510:CDS | 50.0% |
| GCATAGCTTTCCCAGTTTGG+AGG | - | chr1_3:49233181-49233200 | None:intergenic | 50.0% | |
| TCAGGCAACACCAACGAAGT+AGG | - | chr1_3:49233431-49233450 | None:intergenic | 50.0% | |
| AGCCTCAAAGGAGATGAGTG+GGG | + | chr1_3:49233499-49233518 | Msa0122510:CDS | 50.0% | |
| AACCCCACTCATCTCCTTTG+AGG | - | chr1_3:49233504-49233523 | None:intergenic | 50.0% | |
| GAGCTCTACCTCAACAGAAG+TGG | + | chr1_3:49233643-49233662 | Msa0122510:CDS | 50.0% | |
| GGTATCACCGGATAAGACCA+CGG | + | chr1_3:49233874-49233893 | Msa0122510:CDS | 50.0% | |
| GTATCACCGGATAAGACCAC+GGG | + | chr1_3:49233875-49233894 | Msa0122510:CDS | 50.0% | |
| !! | CAATCTCCCGTGGTCTTATC+CGG | - | chr1_3:49233884-49233903 | None:intergenic | 50.0% |
| GACCACGGGAGATTGCAATA+AGG | + | chr1_3:49233889-49233908 | Msa0122510:CDS | 50.0% | |
| ! | TGCCTTATTGCAATCTCCCG+TGG | - | chr1_3:49233894-49233913 | None:intergenic | 50.0% |
| GGCATTCCTCGAAGATGAAC+GGG | + | chr1_3:49233910-49233929 | Msa0122510:CDS | 50.0% | |
| ACATGTCCCGTTCATCTTCG+AGG | - | chr1_3:49233919-49233938 | None:intergenic | 50.0% | |
| !! | CGGTAACAGGCTGTTTCTTC+TGG | - | chr1_3:49234024-49234043 | None:intergenic | 50.0% |
| ! | CTTTTCCAAGGCTGGTAAGG+TGG | - | chr1_3:49234083-49234102 | None:intergenic | 50.0% |
| ! | CCATCACTCTTTTCCAAGGC+TGG | - | chr1_3:49234091-49234110 | None:intergenic | 50.0% |
| CCAGCCTTGGAAAAGAGTGA+TGG | + | chr1_3:49234088-49234107 | Msa0122510:CDS | 50.0% | |
| GCCTTGGAAAAGAGTGATGG+AGG | + | chr1_3:49234091-49234110 | Msa0122510:CDS | 50.0% | |
| ! | GGAAAAGAGTGATGGAGGAC+TGG | + | chr1_3:49234096-49234115 | Msa0122510:CDS | 50.0% |
| ! | TGGCATTGGGTGAGAAGTGT+TGG | - | chr1_3:49234525-49234544 | None:intergenic | 50.0% |
| TTGCGCCAAAACTCTAAGCG+AGG | - | chr1_3:49234639-49234658 | None:intergenic | 50.0% | |
| GGAGATGTGAGTAGGTAGCT+AGG | + | chr1_3:49235241-49235260 | Msa0122510:three_prime_UTR | 50.0% | |
| !! | GGGGGTGCCATTGGAAGAAA+TGG | - | chr1_3:49231634-49231653 | None:intergenic | 55.0% |
| !! | ACAAGAAGTGGGGGTGCCAT+TGG | - | chr1_3:49231643-49231662 | None:intergenic | 55.0% |
| !! | GCTCTAGAATGCACCGGAGA+AGG | + | chr1_3:49233199-49233218 | Msa0122510:CDS | 55.0% |
| !! | TTCGTTGGTGTTGCCTGACG+AGG | + | chr1_3:49233433-49233452 | Msa0122510:CDS | 55.0% |
| CTACGATGACCTCCAGATGC+AGG | - | chr1_3:49233605-49233624 | None:intergenic | 55.0% | |
| CTGCATCTGGAGGTCATCGT+AGG | + | chr1_3:49233603-49233622 | Msa0122510:CDS | 55.0% | |
| GCAGGAATAGACGTAGTGCC+CGG | + | chr1_3:49233978-49233997 | Msa0122510:CDS | 55.0% | |
| ACAGCCTGTTACCGGAGATC+CGG | + | chr1_3:49234030-49234049 | Msa0122510:CDS | 55.0% | |
| TGGATGTGTTGCCGGATCTC+CGG | - | chr1_3:49234044-49234063 | None:intergenic | 55.0% | |
| AGGCTGGTAAGGTGGAGATC+TGG | - | chr1_3:49234075-49234094 | None:intergenic | 55.0% | |
| GATCTCCACCTTACCAGCCT+TGG | + | chr1_3:49234075-49234094 | Msa0122510:CDS | 55.0% | |
| TATAATCTCGCGGTCCTGGG+TGG | - | chr1_3:49234854-49234873 | None:intergenic | 55.0% | |
| GCTCTTCACCATCATTGGGC+TGG | + | chr1_3:49234914-49234933 | Msa0122510:three_prime_UTR | 55.0% | |
| AGGGGCTGAGATTCGAACCC+CGG | + | chr1_3:49232137-49232156 | Msa0122510:intron | 60.0% | |
| GAGCAGCGCACGCTGGAAAA+TGG | + | chr1_3:49232972-49232991 | Msa0122510:CDS | 60.0% | |
| ! | CATTTTCCCAGGGCCTCGTC+AGG | - | chr1_3:49233449-49233468 | None:intergenic | 60.0% |
| AAGCAGCAGCCTGCATCTGG+AGG | + | chr1_3:49233593-49233612 | Msa0122510:CDS | 60.0% | |
| GTTGCCGGATCTCCGGTAAC+AGG | - | chr1_3:49234037-49234056 | None:intergenic | 60.0% | |
| CATGAACGAGCAGCGCACGC+TGG | + | chr1_3:49232965-49232984 | Msa0122510:CDS | 65.0% | |
| GTGTTGCCTGACGAGGCCCT+GGG | + | chr1_3:49233440-49233459 | Msa0122510:CDS | 65.0% | |
| CGGAAGCAGCAGCCTGCATC+TGG | + | chr1_3:49233590-49233609 | Msa0122510:CDS | 65.0% | |
| ! | GGTGTTGCCTGACGAGGCCC+TGG | + | chr1_3:49233439-49233458 | Msa0122510:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49231593 | 49235365 | 49231593 | ID=Msa0122510;Name=Msa0122510 |
| chr1_3 | mRNA | 49231593 | 49235365 | 49231593 | ID=Msa0122510-mRNA-1;Parent=Msa0122510;Name=Msa0122510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=10|1|1|1|0.87|0.77|9|338|477 |
| chr1_3 | exon | 49231593 | 49231677 | 49231593 | ID=Msa0122510-mRNA-1:exon:14846;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49231766 | 49231842 | 49231766 | ID=Msa0122510-mRNA-1:exon:14847;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49232863 | 49233007 | 49232863 | ID=Msa0122510-mRNA-1:exon:14848;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49233151 | 49233298 | 49233151 | ID=Msa0122510-mRNA-1:exon:14849;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49233411 | 49233734 | 49233411 | ID=Msa0122510-mRNA-1:exon:14850;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49233846 | 49234418 | 49233846 | ID=Msa0122510-mRNA-1:exon:14851;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49234622 | 49234680 | 49234622 | ID=Msa0122510-mRNA-1:exon:14852;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49234859 | 49234935 | 49234859 | ID=Msa0122510-mRNA-1:exon:14853;Parent=Msa0122510-mRNA-1 |
| chr1_3 | exon | 49235072 | 49235365 | 49235072 | ID=Msa0122510-mRNA-1:exon:14854;Parent=Msa0122510-mRNA-1 |
| chr1_3 | five_prime_UTR | 49231593 | 49231602 | 49231593 | ID=Msa0122510-mRNA-1:five_prime_utr;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49231603 | 49231677 | 49231603 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49231766 | 49231842 | 49231766 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49232863 | 49233007 | 49232863 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49233151 | 49233298 | 49233151 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49233411 | 49233734 | 49233411 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49233846 | 49234418 | 49233846 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49234622 | 49234680 | 49234622 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | CDS | 49234859 | 49234891 | 49234859 | ID=Msa0122510-mRNA-1:cds;Parent=Msa0122510-mRNA-1 |
| chr1_3 | three_prime_UTR | 49234892 | 49234935 | 49234892 | ID=Msa0122510-mRNA-1:three_prime_utr;Parent=Msa0122510-mRNA-1 |
| chr1_3 | three_prime_UTR | 49235072 | 49235365 | 49235072 | ID=Msa0122510-mRNA-1:three_prime_utr;Parent=Msa0122510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
