Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092130 | XP_024635334.1 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.50e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092130 | sp|Q941D5|VPS2C_ARATH | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.06e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092130 | A0A396JNZ0 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 7.18e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092040 | Msa0092130 | 0.933785 | 1.104009e-95 | -8.615850e-47 |
| Msa0092130 | Msa0122790 | 0.934799 | 2.305560e-96 | -8.615850e-47 |
| Msa0092130 | Msa1415970 | 0.855549 | 5.854499e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092130 | MtrunA17_Chr1g0183621 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.38e-139 | 388 |
| Msa0092130 | MtrunA17_Chr7g0261511 | 73.585 | 212 | 39 | 1 | 5 | 199 | 1 | 212 | 1.44e-97 | 281 |
| Msa0092130 | MtrunA17_Chr2g0303251 | 66.822 | 214 | 50 | 2 | 5 | 197 | 1 | 214 | 3.01e-94 | 273 |
| Msa0092130 | MtrunA17_Chr2g0300321 | 36.697 | 218 | 111 | 3 | 7 | 197 | 4 | 221 | 2.61e-29 | 108 |
| Msa0092130 | MtrunA17_Chr8g0343561 | 39.773 | 176 | 89 | 1 | 7 | 165 | 4 | 179 | 8.93e-29 | 107 |
| Msa0092130 | MtrunA17_Chr4g0028231 | 28.649 | 185 | 115 | 1 | 1 | 168 | 1 | 185 | 1.41e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092130 | AT1G03950.1 | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.08e-106 | 305 |
| Msa0092130 | AT5G44560.1 | 67.727 | 220 | 44 | 2 | 5 | 197 | 1 | 220 | 1.98e-99 | 287 |
| Msa0092130 | AT5G44560.2 | 68.000 | 200 | 37 | 2 | 25 | 197 | 1 | 200 | 5.51e-89 | 260 |
| Msa0092130 | AT5G44560.4 | 71.910 | 178 | 33 | 1 | 5 | 165 | 1 | 178 | 4.58e-87 | 254 |
| Msa0092130 | AT5G44560.3 | 65.333 | 150 | 35 | 1 | 5 | 137 | 1 | 150 | 1.09e-62 | 192 |
| Msa0092130 | AT2G06530.1 | 37.273 | 220 | 110 | 3 | 6 | 197 | 4 | 223 | 2.99e-31 | 114 |
| Msa0092130 | AT2G06530.2 | 39.759 | 166 | 89 | 2 | 43 | 197 | 37 | 202 | 1.73e-24 | 95.9 |
| Msa0092130 | AT5G22950.1 | 26.201 | 229 | 138 | 3 | 1 | 198 | 1 | 229 | 1.40e-13 | 67.4 |
Find 37 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1_2:-74430966 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1_2:-74430985 | None:intergenic |
| GACAGAGTGTGTGAAGAATT+TGG | 0.284129 | 1_2:+74429234 | Msa0092130:five_prime_UTR |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1_2:-74433022 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1_2:+74430414 | Msa0092130:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1_2:-74430215 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1_2:+74430201 | Msa0092130:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1_2:+74432469 | Msa0092130:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1_2:+74430178 | Msa0092130:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1_2:+74433029 | Msa0092130:CDS |
| TCCATAGAAACAGAATTTGC+TGG | 0.445262 | 1_2:+74429183 | None:intergenic |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1_2:+74429474 | Msa0092130:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1_2:+74430985 | Msa0092130:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1_2:+74430393 | Msa0092130:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1_2:-74429497 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1_2:+74430382 | Msa0092130:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1_2:+74432449 | Msa0092130:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1_2:+74429295 | Msa0092130:CDS |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1_2:+74431161 | Msa0092130:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1_2:+74430172 | Msa0092130:CDS |
| GCACAGTCTTCTATTTCTGC+CGG | 0.512916 | 1_2:+74430373 | Msa0092130:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1_2:+74432598 | Msa0092130:intron |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | 1_2:-74429503 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1_2:+74431116 | Msa0092130:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1_2:+74430167 | Msa0092130:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1_2:+74433032 | Msa0092130:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1_2:+74432635 | Msa0092130:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1_2:+74430160 | Msa0092130:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1_2:+74430399 | Msa0092130:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1_2:-74430392 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1_2:-74430178 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1_2:+74430222 | Msa0092130:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1_2:-74431121 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1_2:+74429490 | Msa0092130:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1_2:+74431128 | Msa0092130:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1_2:+74430242 | Msa0092130:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1_2:+74432454 | Msa0092130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTACATTTTTTTTTTT+TGG | + | chr1_2:74429563-74429582 | Msa0092130:intron | 10.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | - | chr1_2:74429610-74429629 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | - | chr1_2:74429611-74429630 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1_2:74430625-74430644 | Msa0092130:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1_2:74431406-74431425 | None:intergenic | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1_2:74432026-74432045 | None:intergenic | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1_2:74432273-74432292 | Msa0092130:intron | 15.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1_2:74432409-74432428 | Msa0092130:intron | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1_2:74432429-74432448 | Msa0092130:intron | 15.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1_2:74429743-74429762 | Msa0092130:intron | 20.0% |
| !!! | TAATTTTGGTACTTTGTTAT+CGG | + | chr1_2:74430296-74430315 | Msa0092130:intron | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | + | chr1_2:74430504-74430523 | Msa0092130:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1_2:74430683-74430702 | Msa0092130:intron | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1_2:74430775-74430794 | Msa0092130:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1_2:74431298-74431317 | Msa0092130:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1_2:74431504-74431523 | Msa0092130:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1_2:74431637-74431656 | Msa0092130:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1_2:74432042-74432061 | Msa0092130:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1_2:74432043-74432062 | Msa0092130:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | - | chr1_2:74432201-74432220 | None:intergenic | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1_2:74432244-74432263 | None:intergenic | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1_2:74432433-74432452 | Msa0092130:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | - | chr1_2:74432706-74432725 | None:intergenic | 20.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | - | chr1_2:74429396-74429415 | None:intergenic | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | - | chr1_2:74429732-74429751 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr1_2:74429979-74429998 | Msa0092130:intron | 25.0% |
| ! | AACATTTGTAGTTTATGAGT+CGG | - | chr1_2:74430045-74430064 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTATC+GGG | + | chr1_2:74430297-74430316 | Msa0092130:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1_2:74430458-74430477 | Msa0092130:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1_2:74430535-74430554 | Msa0092130:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1_2:74430580-74430599 | Msa0092130:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1_2:74430611-74430630 | Msa0092130:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1_2:74430630-74430649 | Msa0092130:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1_2:74430693-74430712 | Msa0092130:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1_2:74430774-74430793 | Msa0092130:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1_2:74430914-74430933 | None:intergenic | 25.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1_2:74430928-74430947 | Msa0092130:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1_2:74431310-74431329 | Msa0092130:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1_2:74431530-74431549 | None:intergenic | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1_2:74431543-74431562 | Msa0092130:intron | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1_2:74431772-74431791 | None:intergenic | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1_2:74431773-74431792 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1_2:74431909-74431928 | Msa0092130:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1_2:74431910-74431929 | Msa0092130:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | + | chr1_2:74432151-74432170 | Msa0092130:intron | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1_2:74432341-74432360 | Msa0092130:intron | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1_2:74432342-74432361 | Msa0092130:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1_2:74432616-74432635 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | - | chr1_2:74432702-74432721 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1_2:74432794-74432813 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1_2:74432869-74432888 | Msa0092130:intron | 25.0% |
| ! | AATTCTAGACAAAAAGTTAG+GGG | - | chr1_2:74433068-74433087 | None:intergenic | 25.0% |
| ! | CAATTCTAGACAAAAAGTTA+GGG | - | chr1_2:74433069-74433088 | None:intergenic | 25.0% |
| ! | ACAATTCTAGACAAAAAGTT+AGG | - | chr1_2:74433070-74433089 | None:intergenic | 25.0% |
| ! | GAAATACATCAAAAACTTCA+AGG | - | chr1_2:74433181-74433200 | None:intergenic | 25.0% |
| AATGAATGATAAGGAAAGGA+AGG | - | chr1_2:74429323-74429342 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | - | chr1_2:74429327-74429346 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | - | chr1_2:74429506-74429525 | None:intergenic | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1_2:74429599-74429618 | None:intergenic | 30.0% | |
| ATTAATTAGATGTGTTCCAC+AGG | + | chr1_2:74429621-74429640 | Msa0092130:intron | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1_2:74429640-74429659 | None:intergenic | 30.0% |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1_2:74429639-74429658 | Msa0092130:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1_2:74429785-74429804 | Msa0092130:intron | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1_2:74429786-74429805 | Msa0092130:intron | 30.0% | |
| TATCTTGTTCCTAGTGATTT+AGG | + | chr1_2:74429835-74429854 | Msa0092130:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1_2:74429944-74429963 | Msa0092130:intron | 30.0% |
| AGTCGGTTAACAAAAGTTTA+TGG | - | chr1_2:74430028-74430047 | None:intergenic | 30.0% | |
| !! | ATTTTGGTACTTTGTTATCG+GGG | + | chr1_2:74430298-74430317 | Msa0092130:intron | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | - | chr1_2:74430569-74430588 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1_2:74430759-74430778 | Msa0092130:intron | 30.0% |
| CATCACTACAGAGTAATTTA+TGG | - | chr1_2:74430870-74430889 | None:intergenic | 30.0% | |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1_2:74430956-74430975 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1_2:74430969-74430988 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | - | chr1_2:74431252-74431271 | None:intergenic | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | - | chr1_2:74431264-74431283 | None:intergenic | 30.0% |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1_2:74431272-74431291 | Msa0092130:intron | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1_2:74431273-74431292 | Msa0092130:intron | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1_2:74431367-74431386 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1_2:74431372-74431391 | None:intergenic | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1_2:74431434-74431453 | Msa0092130:intron | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1_2:74431538-74431557 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1_2:74431549-74431568 | None:intergenic | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1_2:74431692-74431711 | Msa0092130:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1_2:74431745-74431764 | Msa0092130:intron | 30.0% | |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1_2:74431813-74431832 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1_2:74431871-74431890 | Msa0092130:intron | 30.0% |
| TATTAGCAAGTTACACCTTT+AGG | - | chr1_2:74431889-74431908 | None:intergenic | 30.0% | |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1_2:74431958-74431977 | Msa0092130:intron | 30.0% |
| GTACATTAGCAAATGTATCT+AGG | + | chr1_2:74432067-74432086 | Msa0092130:intron | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1_2:74432295-74432314 | Msa0092130:intron | 30.0% | |
| AAGTTGCACATATGATTCTA+CGG | + | chr1_2:74432368-74432387 | Msa0092130:intron | 30.0% | |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1_2:74432575-74432594 | Msa0092130:intron | 30.0% |
| GACATTAAGAAAATGCAGTA+TGG | - | chr1_2:74432667-74432686 | None:intergenic | 30.0% | |
| ! | TCTTTAAAAACTAAGGATGG+AGG | - | chr1_2:74432699-74432718 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1_2:74432793-74432812 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1_2:74432795-74432814 | None:intergenic | 30.0% |
| ATGTATGGTAAACATAGATG+TGG | - | chr1_2:74432919-74432938 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1_2:74432934-74432953 | None:intergenic | 30.0% | |
| AAAAAGTTAGGGGTTTCTAA+GGG | - | chr1_2:74433058-74433077 | None:intergenic | 30.0% | |
| GAGTGATCGAATGAATGATA+AGG | - | chr1_2:74429332-74429351 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1_2:74430167-74430186 | Msa0092130:CDS | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1_2:74430201-74430220 | Msa0092130:CDS | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1_2:74430288-74430307 | None:intergenic | 35.0% | |
| !! | TTTTGGTACTTTGTTATCGG+GGG | + | chr1_2:74430299-74430318 | Msa0092130:intron | 35.0% |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1_2:74430345-74430364 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1_2:74430342-74430361 | Msa0092130:intron | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1_2:74430485-74430504 | None:intergenic | 35.0% | |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | - | chr1_2:74430564-74430583 | None:intergenic | 35.0% |
| CTTGTTCAAGGTTAAGGATT+AGG | + | chr1_2:74430661-74430680 | Msa0092130:intron | 35.0% | |
| GGAAACTTTGCAATCTGAAA+AGG | - | chr1_2:74430719-74430738 | None:intergenic | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1_2:74430734-74430753 | Msa0092130:intron | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1_2:74430779-74430798 | Msa0092130:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1_2:74430841-74430860 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1_2:74430842-74430861 | Msa0092130:intron | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1_2:74430908-74430927 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1_2:74431124-74431143 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1_2:74431128-74431147 | Msa0092130:CDS | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1_2:74431169-74431188 | Msa0092130:intron | 35.0% | |
| ! | GCTGAGATTTTCAACAATTC+TGG | - | chr1_2:74431265-74431284 | None:intergenic | 35.0% |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1_2:74431373-74431392 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1_2:74431370-74431389 | Msa0092130:intron | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1_2:74431379-74431398 | Msa0092130:intron | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1_2:74431589-74431608 | Msa0092130:intron | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1_2:74431750-74431769 | None:intergenic | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1_2:74431798-74431817 | None:intergenic | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1_2:74431859-74431878 | Msa0092130:intron | 35.0% |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1_2:74432294-74432313 | Msa0092130:intron | 35.0% | |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1_2:74432529-74432548 | None:intergenic | 35.0% |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1_2:74432635-74432654 | Msa0092130:CDS | 35.0% | |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1_2:74432691-74432710 | None:intergenic | 35.0% | |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1_2:74432791-74432810 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1_2:74432792-74432811 | None:intergenic | 35.0% |
| GGTAAACATAGATGTGGATT+CGG | - | chr1_2:74432913-74432932 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1_2:74432998-74433017 | None:intergenic | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1_2:74433025-74433044 | None:intergenic | 35.0% | |
| CAAAAAGTTAGGGGTTTCTA+AGG | - | chr1_2:74433059-74433078 | None:intergenic | 35.0% | |
| CTGAAATCCCAAAAAAACGT+GGG | - | chr1_2:74433138-74433157 | None:intergenic | 35.0% | |
| ! | TCTGAAATCCCAAAAAAACG+TGG | - | chr1_2:74433139-74433158 | None:intergenic | 35.0% |
| GACAGAGTGTGTGAAGAATT+TGG | + | chr1_2:74429234-74429253 | Msa0092130:five_prime_UTR | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | + | chr1_2:74429295-74429314 | Msa0092130:CDS | 40.0% | |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | - | chr1_2:74429299-74429318 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | - | chr1_2:74429313-74429332 | None:intergenic | 40.0% |
| AAAGCGAAATTGAATGACGG+TGG | - | chr1_2:74429393-74429412 | None:intergenic | 40.0% | |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | - | chr1_2:74429431-74429450 | None:intergenic | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | - | chr1_2:74429432-74429451 | None:intergenic | 40.0% |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1_2:74429474-74429493 | Msa0092130:CDS | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1_2:74429500-74429519 | None:intergenic | 40.0% | |
| CAAACAGAGCCTAAATCACT+AGG | - | chr1_2:74429847-74429866 | None:intergenic | 40.0% | |
| CTAGTGATTTAGGCTCTGTT+TGG | + | chr1_2:74429845-74429864 | Msa0092130:intron | 40.0% | |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1_2:74430137-74430156 | Msa0092130:intron | 40.0% |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1_2:74430160-74430179 | Msa0092130:CDS | 40.0% | |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1_2:74430282-74430301 | Msa0092130:intron | 40.0% |
| ! | TTTGGTACTTTGTTATCGGG+GGG | + | chr1_2:74430300-74430319 | Msa0092130:intron | 40.0% |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1_2:74430414-74430433 | Msa0092130:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1_2:74430484-74430503 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1_2:74430487-74430506 | Msa0092130:intron | 40.0% | |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1_2:74430584-74430603 | Msa0092130:intron | 40.0% |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1_2:74430597-74430616 | Msa0092130:intron | 40.0% | |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1_2:74430655-74430674 | Msa0092130:intron | 40.0% |
| TCCTTAACCTTGAACAAGCT+TGG | - | chr1_2:74430659-74430678 | None:intergenic | 40.0% | |
| ACTTTGCAATCTGAAAAGGC+CGG | - | chr1_2:74430715-74430734 | None:intergenic | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1_2:74430740-74430759 | None:intergenic | 40.0% | |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1_2:74430988-74431007 | None:intergenic | 40.0% |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1_2:74430985-74431004 | Msa0092130:CDS | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | + | chr1_2:74431056-74431075 | Msa0092130:intron | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1_2:74431069-74431088 | None:intergenic | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1_2:74431161-74431180 | Msa0092130:CDS | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1_2:74431444-74431463 | None:intergenic | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1_2:74431967-74431986 | None:intergenic | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1_2:74431968-74431987 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1_2:74432371-74432390 | Msa0092130:intron | 40.0% | |
| !!! | TCAGAACTCCCACGTTTTTT+TGG | + | chr1_2:74433127-74433146 | Msa0092130:three_prime_UTR | 40.0% |
| !!! | CAGAACTCCCACGTTTTTTT+GGG | + | chr1_2:74433128-74433147 | Msa0092130:three_prime_UTR | 40.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | - | chr1_2:74429307-74429326 | None:intergenic | 45.0% |
| CGAAATTGAATGACGGTGGA+AGG | - | chr1_2:74429389-74429408 | None:intergenic | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | - | chr1_2:74429451-74429470 | None:intergenic | 45.0% | |
| AACCTCTGCATGGATAGAGA+AGG | - | chr1_2:74429452-74429471 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1_2:74429794-74429813 | Msa0092130:intron | 45.0% | |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1_2:74430152-74430171 | None:intergenic | 45.0% |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1_2:74430172-74430191 | Msa0092130:CDS | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1_2:74430218-74430237 | None:intergenic | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1_2:74430258-74430277 | Msa0092130:intron | 45.0% | |
| !! | GCACAGTCTTCTATTTCTGC+CGG | + | chr1_2:74430373-74430392 | Msa0092130:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1_2:74430382-74430401 | Msa0092130:CDS | 45.0% |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1_2:74430395-74430414 | None:intergenic | 45.0% | |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1_2:74430399-74430418 | Msa0092130:CDS | 45.0% |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1_2:74430478-74430497 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1_2:74430649-74430668 | Msa0092130:intron | 45.0% |
| AGATGCCATCGATGATGTCT+TGG | + | chr1_2:74431116-74431135 | Msa0092130:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1_2:74431278-74431297 | Msa0092130:intron | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1_2:74431349-74431368 | None:intergenic | 45.0% | |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1_2:74431565-74431584 | Msa0092130:intron | 45.0% |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1_2:74431583-74431602 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1_2:74431584-74431603 | None:intergenic | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1_2:74431585-74431604 | None:intergenic | 45.0% | |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1_2:74431928-74431947 | Msa0092130:intron | 45.0% |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1_2:74432449-74432468 | Msa0092130:intron | 45.0% | |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1_2:74432477-74432496 | Msa0092130:intron | 45.0% |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1_2:74432598-74432617 | Msa0092130:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1_2:74433014-74433033 | None:intergenic | 45.0% | |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1_2:74433029-74433048 | Msa0092130:CDS | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1_2:74432270-74432289 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1_2:74432269-74432288 | Msa0092130:intron | 5.0% |
| TCTGCATGGATAGAGAAGGG+GGG | - | chr1_2:74429448-74429467 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | - | chr1_2:74429449-74429468 | None:intergenic | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | - | chr1_2:74429450-74429469 | None:intergenic | 50.0% | |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | - | chr1_2:74429462-74429481 | None:intergenic | 50.0% |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1_2:74429490-74429509 | Msa0092130:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1_2:74430222-74430241 | Msa0092130:CDS | 50.0% | |
| AGGCATAGCAACTCACACAC+AGG | + | chr1_2:74430242-74430261 | Msa0092130:CDS | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1_2:74430261-74430280 | Msa0092130:intron | 50.0% | |
| ! | GTACTTTGTTATCGGGGGGT+GGG | + | chr1_2:74430304-74430323 | Msa0092130:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1_2:74430393-74430412 | Msa0092130:CDS | 50.0% |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1_2:74431354-74431373 | Msa0092130:intron | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1_2:74431359-74431378 | None:intergenic | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1_2:74431451-74431470 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1_2:74431564-74431583 | Msa0092130:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1_2:74432473-74432492 | Msa0092130:intron | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1_2:74433032-74433051 | Msa0092130:CDS | 50.0% |
| CCCCTTCTCTATCCATGCAG+AGG | + | chr1_2:74429447-74429466 | Msa0092130:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1_2:74430181-74430200 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1_2:74430178-74430197 | Msa0092130:CDS | 55.0% | |
| ! | GGTACTTTGTTATCGGGGGG+TGG | + | chr1_2:74430303-74430322 | Msa0092130:intron | 55.0% |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1_2:74432454-74432473 | Msa0092130:intron | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1_2:74432596-74432615 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1_2:74432773-74432792 | None:intergenic | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1_2:74432778-74432797 | None:intergenic | 55.0% | |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1_2:74432783-74432802 | None:intergenic | 55.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1_2:74432469-74432488 | Msa0092130:CDS | 60.0% |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1_2:74432774-74432793 | None:intergenic | 60.0% | |
| CGCGCGCACACACACACACT+TGG | + | chr1_2:74432117-74432136 | Msa0092130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 74429193 | 74433213 | 74429193 | ID=Msa0092130;Name=Msa0092130 |
| chr1_2 | mRNA | 74429193 | 74433213 | 74429193 | ID=Msa0092130-mRNA-1;Parent=Msa0092130;Name=Msa0092130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=78|0.88|1|1|1|1|10|142|199 |
| chr1_2 | exon | 74429193 | 74429316 | 74429193 | ID=Msa0092130-mRNA-1:exon:26221;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74429467 | 74429511 | 74429467 | ID=Msa0092130-mRNA-1:exon:26222;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74429643 | 74429677 | 74429643 | ID=Msa0092130-mRNA-1:exon:26223;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74430159 | 74430263 | 74430159 | ID=Msa0092130-mRNA-1:exon:26224;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74430364 | 74430435 | 74430364 | ID=Msa0092130-mRNA-1:exon:26225;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74430944 | 74431015 | 74430944 | ID=Msa0092130-mRNA-1:exon:26226;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74431102 | 74431182 | 74431102 | ID=Msa0092130-mRNA-1:exon:26227;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74432455 | 74432490 | 74432455 | ID=Msa0092130-mRNA-1:exon:26228;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74432601 | 74432656 | 74432601 | ID=Msa0092130-mRNA-1:exon:26229;Parent=Msa0092130-mRNA-1 |
| chr1_2 | exon | 74433020 | 74433213 | 74433020 | ID=Msa0092130-mRNA-1:exon:26230;Parent=Msa0092130-mRNA-1 |
| chr1_2 | five_prime_UTR | 74429193 | 74429270 | 74429193 | ID=Msa0092130-mRNA-1:five_prime_utr;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74429271 | 74429316 | 74429271 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74429467 | 74429511 | 74429467 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74429643 | 74429677 | 74429643 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74430159 | 74430263 | 74430159 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74430364 | 74430435 | 74430364 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74430944 | 74431015 | 74430944 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74431102 | 74431182 | 74431102 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74432455 | 74432490 | 74432455 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74432601 | 74432656 | 74432601 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | CDS | 74433020 | 74433071 | 74433020 | ID=Msa0092130-mRNA-1:cds;Parent=Msa0092130-mRNA-1 |
| chr1_2 | three_prime_UTR | 74433072 | 74433213 | 74433072 | ID=Msa0092130-mRNA-1:three_prime_utr;Parent=Msa0092130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
