Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092040 | sp|Q941D5|VPS2C_ARATH | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.06e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092040 | A0A396JNZ0 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 7.18e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033110 | Msa0092040 | 0.825029 | 5.856123e-54 | -8.615850e-47 |
| Msa0033260 | Msa0092040 | 0.833216 | 6.058117e-56 | -8.615850e-47 |
| Msa0072420 | Msa0092040 | 0.801195 | 1.009626e-48 | -8.615850e-47 |
| Msa0091410 | Msa0092040 | 0.832768 | 7.828483e-56 | -8.615850e-47 |
| Msa0092040 | Msa0092130 | 0.933785 | 1.104009e-95 | -8.615850e-47 |
| Msa0092040 | Msa0122790 | 0.928693 | 2.011112e-92 | -8.615850e-47 |
| Msa0092040 | Msa0357900 | 0.803513 | 3.362782e-49 | -8.615850e-47 |
| Msa0092040 | Msa1254730 | 0.807560 | 4.761694e-50 | -8.615850e-47 |
| Msa0092040 | Msa1415970 | 0.909389 | 6.014928e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092040 | MtrunA17_Chr1g0183621 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.38e-139 | 388 |
| Msa0092040 | MtrunA17_Chr7g0261511 | 73.585 | 212 | 39 | 1 | 5 | 199 | 1 | 212 | 1.44e-97 | 281 |
| Msa0092040 | MtrunA17_Chr2g0303251 | 66.822 | 214 | 50 | 2 | 5 | 197 | 1 | 214 | 3.01e-94 | 273 |
| Msa0092040 | MtrunA17_Chr2g0300321 | 36.697 | 218 | 111 | 3 | 7 | 197 | 4 | 221 | 2.61e-29 | 108 |
| Msa0092040 | MtrunA17_Chr8g0343561 | 39.773 | 176 | 89 | 1 | 7 | 165 | 4 | 179 | 8.93e-29 | 107 |
| Msa0092040 | MtrunA17_Chr4g0028231 | 28.649 | 185 | 115 | 1 | 1 | 168 | 1 | 185 | 1.41e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092040 | AT1G03950.1 | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.08e-106 | 305 |
| Msa0092040 | AT5G44560.1 | 67.727 | 220 | 44 | 2 | 5 | 197 | 1 | 220 | 1.98e-99 | 287 |
| Msa0092040 | AT5G44560.2 | 68.000 | 200 | 37 | 2 | 25 | 197 | 1 | 200 | 5.51e-89 | 260 |
| Msa0092040 | AT5G44560.4 | 71.910 | 178 | 33 | 1 | 5 | 165 | 1 | 178 | 4.58e-87 | 254 |
| Msa0092040 | AT5G44560.3 | 65.333 | 150 | 35 | 1 | 5 | 137 | 1 | 150 | 1.09e-62 | 192 |
| Msa0092040 | AT2G06530.1 | 37.273 | 220 | 110 | 3 | 6 | 197 | 4 | 223 | 2.99e-31 | 114 |
| Msa0092040 | AT2G06530.2 | 39.759 | 166 | 89 | 2 | 43 | 197 | 37 | 202 | 1.73e-24 | 95.9 |
| Msa0092040 | AT5G22950.1 | 26.201 | 229 | 138 | 3 | 1 | 198 | 1 | 229 | 1.40e-13 | 67.4 |
Find 37 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1_2:-74263242 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1_2:-74263261 | None:intergenic |
| GACAGAGTGTGTGAAGAATT+TGG | 0.284129 | 1_2:+74261524 | Msa0092040:five_prime_UTR |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1_2:-74265298 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1_2:+74262690 | Msa0092040:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1_2:-74262491 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1_2:+74262477 | Msa0092040:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1_2:+74264745 | Msa0092040:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1_2:+74262454 | Msa0092040:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1_2:+74265305 | Msa0092040:CDS |
| TCCATAGAAACAGAATTTGC+TGG | 0.445262 | 1_2:+74261473 | None:intergenic |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1_2:+74261759 | Msa0092040:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1_2:+74263261 | Msa0092040:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1_2:+74262669 | Msa0092040:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1_2:-74261782 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1_2:+74262658 | Msa0092040:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1_2:+74264725 | Msa0092040:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1_2:+74261585 | Msa0092040:CDS |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1_2:+74263437 | Msa0092040:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1_2:+74262448 | Msa0092040:CDS |
| GCACAGTCTTCTATTTCTGC+CGG | 0.512916 | 1_2:+74262649 | Msa0092040:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1_2:+74264874 | Msa0092040:intron |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | 1_2:-74261788 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1_2:+74263392 | Msa0092040:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1_2:+74262443 | Msa0092040:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1_2:+74265308 | Msa0092040:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1_2:+74264911 | Msa0092040:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1_2:+74262436 | Msa0092040:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1_2:+74262675 | Msa0092040:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1_2:-74262668 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1_2:-74262454 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1_2:+74262498 | Msa0092040:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1_2:-74263397 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1_2:+74261775 | Msa0092040:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1_2:+74263404 | Msa0092040:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1_2:+74262518 | Msa0092040:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1_2:+74264730 | Msa0092040:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACATTTACATTTTTTTT+TGG | + | chr1_2:74261839-74261858 | Msa0092040:intron | 10.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | - | chr1_2:74261886-74261905 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | - | chr1_2:74261887-74261906 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1_2:74262901-74262920 | Msa0092040:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1_2:74263682-74263701 | None:intergenic | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1_2:74264302-74264321 | None:intergenic | 15.0% |
| !! | ATTTGATATCAAAATAGTTA+AGG | - | chr1_2:74264477-74264496 | None:intergenic | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1_2:74264549-74264568 | Msa0092040:intron | 15.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1_2:74264685-74264704 | Msa0092040:intron | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1_2:74264705-74264724 | Msa0092040:intron | 15.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1_2:74262019-74262038 | Msa0092040:intron | 20.0% |
| !!! | TAATTTTGGTACTTTGTTAT+CGG | + | chr1_2:74262572-74262591 | Msa0092040:intron | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | + | chr1_2:74262780-74262799 | Msa0092040:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1_2:74262959-74262978 | Msa0092040:intron | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1_2:74263051-74263070 | Msa0092040:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1_2:74263574-74263593 | Msa0092040:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1_2:74263780-74263799 | Msa0092040:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1_2:74263913-74263932 | Msa0092040:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1_2:74264318-74264337 | Msa0092040:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1_2:74264319-74264338 | Msa0092040:intron | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1_2:74264520-74264539 | None:intergenic | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1_2:74264709-74264728 | Msa0092040:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | - | chr1_2:74264982-74265001 | None:intergenic | 20.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | - | chr1_2:74261681-74261700 | None:intergenic | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | - | chr1_2:74262008-74262027 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr1_2:74262255-74262274 | Msa0092040:intron | 25.0% |
| ! | AACATTTGTAGTTTATGAGT+CGG | - | chr1_2:74262321-74262340 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTATC+GGG | + | chr1_2:74262573-74262592 | Msa0092040:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1_2:74262734-74262753 | Msa0092040:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1_2:74262811-74262830 | Msa0092040:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1_2:74262856-74262875 | Msa0092040:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1_2:74262887-74262906 | Msa0092040:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1_2:74262906-74262925 | Msa0092040:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1_2:74262969-74262988 | Msa0092040:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1_2:74263050-74263069 | Msa0092040:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1_2:74263190-74263209 | None:intergenic | 25.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1_2:74263204-74263223 | Msa0092040:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1_2:74263586-74263605 | Msa0092040:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1_2:74263806-74263825 | None:intergenic | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1_2:74263819-74263838 | Msa0092040:intron | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1_2:74264048-74264067 | None:intergenic | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1_2:74264049-74264068 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1_2:74264185-74264204 | Msa0092040:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1_2:74264186-74264205 | Msa0092040:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | + | chr1_2:74264427-74264446 | Msa0092040:intron | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1_2:74264617-74264636 | Msa0092040:intron | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1_2:74264618-74264637 | Msa0092040:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1_2:74264892-74264911 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | - | chr1_2:74264978-74264997 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1_2:74265070-74265089 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1_2:74265145-74265164 | Msa0092040:intron | 25.0% |
| ! | AATTCTAGACAAAAAGTTAG+GGG | - | chr1_2:74265344-74265363 | None:intergenic | 25.0% |
| ! | CAATTCTAGACAAAAAGTTA+GGG | - | chr1_2:74265345-74265364 | None:intergenic | 25.0% |
| ! | ACAATTCTAGACAAAAAGTT+AGG | - | chr1_2:74265346-74265365 | None:intergenic | 25.0% |
| ! | GAAATACATCAAAAACTTCA+AGG | - | chr1_2:74265457-74265476 | None:intergenic | 25.0% |
| AATGAATGATAAGGAAAGGA+AGG | - | chr1_2:74261613-74261632 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | - | chr1_2:74261617-74261636 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | - | chr1_2:74261791-74261810 | None:intergenic | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1_2:74261875-74261894 | None:intergenic | 30.0% | |
| ATTAATTAGATGTGTTCCAC+AGG | + | chr1_2:74261897-74261916 | Msa0092040:intron | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1_2:74261916-74261935 | None:intergenic | 30.0% |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1_2:74261915-74261934 | Msa0092040:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1_2:74262061-74262080 | Msa0092040:intron | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1_2:74262062-74262081 | Msa0092040:intron | 30.0% | |
| TATCTTGTTCCTAGTGATTT+AGG | + | chr1_2:74262111-74262130 | Msa0092040:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1_2:74262220-74262239 | Msa0092040:intron | 30.0% |
| AGTCGGTTAACAAAAGTTTA+TGG | - | chr1_2:74262304-74262323 | None:intergenic | 30.0% | |
| !! | ATTTTGGTACTTTGTTATCG+GGG | + | chr1_2:74262574-74262593 | Msa0092040:intron | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | - | chr1_2:74262845-74262864 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1_2:74263035-74263054 | Msa0092040:intron | 30.0% |
| CATCACTACAGAGTAATTTA+TGG | - | chr1_2:74263146-74263165 | None:intergenic | 30.0% | |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1_2:74263232-74263251 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1_2:74263245-74263264 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | - | chr1_2:74263528-74263547 | None:intergenic | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | - | chr1_2:74263540-74263559 | None:intergenic | 30.0% |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1_2:74263548-74263567 | Msa0092040:intron | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1_2:74263549-74263568 | Msa0092040:intron | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1_2:74263643-74263662 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1_2:74263648-74263667 | None:intergenic | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1_2:74263710-74263729 | Msa0092040:intron | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1_2:74263814-74263833 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1_2:74263825-74263844 | None:intergenic | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1_2:74263968-74263987 | Msa0092040:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1_2:74264021-74264040 | Msa0092040:intron | 30.0% | |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1_2:74264089-74264108 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1_2:74264147-74264166 | Msa0092040:intron | 30.0% |
| TATTAGCAAGTTACACCTTT+AGG | - | chr1_2:74264165-74264184 | None:intergenic | 30.0% | |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1_2:74264234-74264253 | Msa0092040:intron | 30.0% |
| GTACATTAGCAAATGTATCT+AGG | + | chr1_2:74264343-74264362 | Msa0092040:intron | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1_2:74264571-74264590 | Msa0092040:intron | 30.0% | |
| AAGTTGCACATATGATTCTA+CGG | + | chr1_2:74264644-74264663 | Msa0092040:intron | 30.0% | |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1_2:74264851-74264870 | Msa0092040:intron | 30.0% |
| GACATTAAGAAAATGCAGTA+TGG | - | chr1_2:74264943-74264962 | None:intergenic | 30.0% | |
| ! | TCTTTAAAAACTAAGGATGG+AGG | - | chr1_2:74264975-74264994 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1_2:74265069-74265088 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1_2:74265071-74265090 | None:intergenic | 30.0% |
| ATGTATGGTAAACATAGATG+TGG | - | chr1_2:74265195-74265214 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1_2:74265210-74265229 | None:intergenic | 30.0% | |
| AAAAAGTTAGGGGTTTCTAA+GGG | - | chr1_2:74265334-74265353 | None:intergenic | 30.0% | |
| GAGTGATCGAATGAATGATA+AGG | - | chr1_2:74261622-74261641 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1_2:74262443-74262462 | Msa0092040:CDS | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1_2:74262477-74262496 | Msa0092040:CDS | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1_2:74262564-74262583 | None:intergenic | 35.0% | |
| !! | TTTTGGTACTTTGTTATCGG+GGG | + | chr1_2:74262575-74262594 | Msa0092040:intron | 35.0% |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1_2:74262621-74262640 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1_2:74262618-74262637 | Msa0092040:intron | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1_2:74262761-74262780 | None:intergenic | 35.0% | |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | - | chr1_2:74262840-74262859 | None:intergenic | 35.0% |
| CTTGTTCAAGGTTAAGGATT+AGG | + | chr1_2:74262937-74262956 | Msa0092040:intron | 35.0% | |
| GGAAACTTTGCAATCTGAAA+AGG | - | chr1_2:74262995-74263014 | None:intergenic | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1_2:74263010-74263029 | Msa0092040:intron | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1_2:74263055-74263074 | Msa0092040:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1_2:74263117-74263136 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1_2:74263118-74263137 | Msa0092040:intron | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1_2:74263184-74263203 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1_2:74263400-74263419 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1_2:74263404-74263423 | Msa0092040:CDS | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1_2:74263445-74263464 | Msa0092040:intron | 35.0% | |
| ! | GCTGAGATTTTCAACAATTC+TGG | - | chr1_2:74263541-74263560 | None:intergenic | 35.0% |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1_2:74263649-74263668 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1_2:74263646-74263665 | Msa0092040:intron | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1_2:74263655-74263674 | Msa0092040:intron | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1_2:74263865-74263884 | Msa0092040:intron | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1_2:74264026-74264045 | None:intergenic | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1_2:74264074-74264093 | None:intergenic | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1_2:74264135-74264154 | Msa0092040:intron | 35.0% |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1_2:74264570-74264589 | Msa0092040:intron | 35.0% | |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1_2:74264805-74264824 | None:intergenic | 35.0% |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1_2:74264911-74264930 | Msa0092040:CDS | 35.0% | |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1_2:74264967-74264986 | None:intergenic | 35.0% | |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1_2:74265067-74265086 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1_2:74265068-74265087 | None:intergenic | 35.0% |
| GGTAAACATAGATGTGGATT+CGG | - | chr1_2:74265189-74265208 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1_2:74265274-74265293 | None:intergenic | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1_2:74265301-74265320 | None:intergenic | 35.0% | |
| CAAAAAGTTAGGGGTTTCTA+AGG | - | chr1_2:74265335-74265354 | None:intergenic | 35.0% | |
| CTGAAATCCCAAAAAAACGT+GGG | - | chr1_2:74265414-74265433 | None:intergenic | 35.0% | |
| ! | TCTGAAATCCCAAAAAAACG+TGG | - | chr1_2:74265415-74265434 | None:intergenic | 35.0% |
| GACAGAGTGTGTGAAGAATT+TGG | + | chr1_2:74261524-74261543 | Msa0092040:five_prime_UTR | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | + | chr1_2:74261585-74261604 | Msa0092040:CDS | 40.0% | |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | - | chr1_2:74261589-74261608 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | - | chr1_2:74261603-74261622 | None:intergenic | 40.0% |
| AAAGCGAAATTGAATGACGG+TGG | - | chr1_2:74261678-74261697 | None:intergenic | 40.0% | |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | - | chr1_2:74261716-74261735 | None:intergenic | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | - | chr1_2:74261717-74261736 | None:intergenic | 40.0% |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1_2:74261759-74261778 | Msa0092040:CDS | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1_2:74261785-74261804 | None:intergenic | 40.0% | |
| CAAACAGAGCCTAAATCACT+AGG | - | chr1_2:74262123-74262142 | None:intergenic | 40.0% | |
| CTAGTGATTTAGGCTCTGTT+TGG | + | chr1_2:74262121-74262140 | Msa0092040:intron | 40.0% | |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1_2:74262413-74262432 | Msa0092040:intron | 40.0% |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1_2:74262436-74262455 | Msa0092040:CDS | 40.0% | |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1_2:74262558-74262577 | Msa0092040:intron | 40.0% |
| ! | TTTGGTACTTTGTTATCGGG+GGG | + | chr1_2:74262576-74262595 | Msa0092040:intron | 40.0% |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1_2:74262690-74262709 | Msa0092040:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1_2:74262760-74262779 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1_2:74262763-74262782 | Msa0092040:intron | 40.0% | |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1_2:74262860-74262879 | Msa0092040:intron | 40.0% |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1_2:74262873-74262892 | Msa0092040:intron | 40.0% | |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1_2:74262931-74262950 | Msa0092040:intron | 40.0% |
| TCCTTAACCTTGAACAAGCT+TGG | - | chr1_2:74262935-74262954 | None:intergenic | 40.0% | |
| ACTTTGCAATCTGAAAAGGC+CGG | - | chr1_2:74262991-74263010 | None:intergenic | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1_2:74263016-74263035 | None:intergenic | 40.0% | |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1_2:74263264-74263283 | None:intergenic | 40.0% |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1_2:74263261-74263280 | Msa0092040:CDS | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | + | chr1_2:74263332-74263351 | Msa0092040:intron | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1_2:74263345-74263364 | None:intergenic | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1_2:74263437-74263456 | Msa0092040:CDS | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1_2:74263720-74263739 | None:intergenic | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1_2:74264243-74264262 | None:intergenic | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1_2:74264244-74264263 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1_2:74264647-74264666 | Msa0092040:intron | 40.0% | |
| !!! | TCAGAACTCCCACGTTTTTT+TGG | + | chr1_2:74265403-74265422 | Msa0092040:three_prime_UTR | 40.0% |
| !!! | CAGAACTCCCACGTTTTTTT+GGG | + | chr1_2:74265404-74265423 | Msa0092040:three_prime_UTR | 40.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | - | chr1_2:74261597-74261616 | None:intergenic | 45.0% |
| CGAAATTGAATGACGGTGGA+AGG | - | chr1_2:74261674-74261693 | None:intergenic | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | - | chr1_2:74261736-74261755 | None:intergenic | 45.0% | |
| AACCTCTGCATGGATAGAGA+AGG | - | chr1_2:74261737-74261756 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1_2:74262070-74262089 | Msa0092040:intron | 45.0% | |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1_2:74262428-74262447 | None:intergenic | 45.0% |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1_2:74262448-74262467 | Msa0092040:CDS | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1_2:74262494-74262513 | None:intergenic | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1_2:74262534-74262553 | Msa0092040:intron | 45.0% | |
| !! | GCACAGTCTTCTATTTCTGC+CGG | + | chr1_2:74262649-74262668 | Msa0092040:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1_2:74262658-74262677 | Msa0092040:CDS | 45.0% |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1_2:74262671-74262690 | None:intergenic | 45.0% | |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1_2:74262675-74262694 | Msa0092040:CDS | 45.0% |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1_2:74262754-74262773 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1_2:74262925-74262944 | Msa0092040:intron | 45.0% |
| AGATGCCATCGATGATGTCT+TGG | + | chr1_2:74263392-74263411 | Msa0092040:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1_2:74263554-74263573 | Msa0092040:intron | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1_2:74263625-74263644 | None:intergenic | 45.0% | |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1_2:74263841-74263860 | Msa0092040:intron | 45.0% |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1_2:74263859-74263878 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1_2:74263860-74263879 | None:intergenic | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1_2:74263861-74263880 | None:intergenic | 45.0% | |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1_2:74264204-74264223 | Msa0092040:intron | 45.0% |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1_2:74264725-74264744 | Msa0092040:intron | 45.0% | |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1_2:74264753-74264772 | Msa0092040:intron | 45.0% |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1_2:74264874-74264893 | Msa0092040:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1_2:74265290-74265309 | None:intergenic | 45.0% | |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1_2:74265305-74265324 | Msa0092040:CDS | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1_2:74264546-74264565 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1_2:74264545-74264564 | Msa0092040:intron | 5.0% |
| TCTGCATGGATAGAGAAGGG+GGG | - | chr1_2:74261733-74261752 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | - | chr1_2:74261734-74261753 | None:intergenic | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | - | chr1_2:74261735-74261754 | None:intergenic | 50.0% | |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | - | chr1_2:74261747-74261766 | None:intergenic | 50.0% |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1_2:74261775-74261794 | Msa0092040:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1_2:74262498-74262517 | Msa0092040:CDS | 50.0% | |
| AGGCATAGCAACTCACACAC+AGG | + | chr1_2:74262518-74262537 | Msa0092040:CDS | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1_2:74262537-74262556 | Msa0092040:intron | 50.0% | |
| ! | GTACTTTGTTATCGGGGGGT+GGG | + | chr1_2:74262580-74262599 | Msa0092040:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1_2:74262669-74262688 | Msa0092040:CDS | 50.0% |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1_2:74263630-74263649 | Msa0092040:intron | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1_2:74263635-74263654 | None:intergenic | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1_2:74263727-74263746 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1_2:74263840-74263859 | Msa0092040:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1_2:74264749-74264768 | Msa0092040:intron | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1_2:74265308-74265327 | Msa0092040:CDS | 50.0% |
| CCCCTTCTCTATCCATGCAG+AGG | + | chr1_2:74261732-74261751 | Msa0092040:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1_2:74262457-74262476 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1_2:74262454-74262473 | Msa0092040:CDS | 55.0% | |
| ! | GGTACTTTGTTATCGGGGGG+TGG | + | chr1_2:74262579-74262598 | Msa0092040:intron | 55.0% |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1_2:74264730-74264749 | Msa0092040:intron | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1_2:74264872-74264891 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1_2:74265049-74265068 | None:intergenic | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1_2:74265054-74265073 | None:intergenic | 55.0% | |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1_2:74265059-74265078 | None:intergenic | 55.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1_2:74264745-74264764 | Msa0092040:CDS | 60.0% |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1_2:74265050-74265069 | None:intergenic | 60.0% | |
| CGCGCGCACACACACACACT+TGG | + | chr1_2:74264393-74264412 | Msa0092040:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 74261483 | 74265489 | 74261483 | ID=Msa0092040;Name=Msa0092040 |
| chr1_2 | mRNA | 74261483 | 74265489 | 74261483 | ID=Msa0092040-mRNA-1;Parent=Msa0092040;Name=Msa0092040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=78|0.88|1|1|1|1|10|142|199 |
| chr1_2 | exon | 74261483 | 74261606 | 74261483 | ID=Msa0092040-mRNA-1:exon:26159;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74261752 | 74261796 | 74261752 | ID=Msa0092040-mRNA-1:exon:26160;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74261919 | 74261953 | 74261919 | ID=Msa0092040-mRNA-1:exon:26161;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74262435 | 74262539 | 74262435 | ID=Msa0092040-mRNA-1:exon:26162;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74262640 | 74262711 | 74262640 | ID=Msa0092040-mRNA-1:exon:26163;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74263220 | 74263291 | 74263220 | ID=Msa0092040-mRNA-1:exon:26164;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74263378 | 74263458 | 74263378 | ID=Msa0092040-mRNA-1:exon:26165;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74264731 | 74264766 | 74264731 | ID=Msa0092040-mRNA-1:exon:26166;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74264877 | 74264932 | 74264877 | ID=Msa0092040-mRNA-1:exon:26167;Parent=Msa0092040-mRNA-1 |
| chr1_2 | exon | 74265296 | 74265489 | 74265296 | ID=Msa0092040-mRNA-1:exon:26168;Parent=Msa0092040-mRNA-1 |
| chr1_2 | five_prime_UTR | 74261483 | 74261560 | 74261483 | ID=Msa0092040-mRNA-1:five_prime_utr;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74261561 | 74261606 | 74261561 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74261752 | 74261796 | 74261752 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74261919 | 74261953 | 74261919 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74262435 | 74262539 | 74262435 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74262640 | 74262711 | 74262640 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74263220 | 74263291 | 74263220 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74263378 | 74263458 | 74263378 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74264731 | 74264766 | 74264731 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74264877 | 74264932 | 74264877 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | CDS | 74265296 | 74265347 | 74265296 | ID=Msa0092040-mRNA-1:cds;Parent=Msa0092040-mRNA-1 |
| chr1_2 | three_prime_UTR | 74265348 | 74265489 | 74265348 | ID=Msa0092040-mRNA-1:three_prime_utr;Parent=Msa0092040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
