Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415970 | sp|Q941D5|VPS2C_ARATH | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.06e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415970 | A0A396JNZ0 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 7.18e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092040 | Msa1415970 | 0.909389 | 6.014928e-82 | -8.615850e-47 |
| Msa0092130 | Msa1415970 | 0.855549 | 5.854499e-62 | -8.615850e-47 |
| Msa0122790 | Msa1415970 | 0.855026 | 8.312366e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415970 | MtrunA17_Chr1g0183621 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.38e-139 | 388 |
| Msa1415970 | MtrunA17_Chr7g0261511 | 73.585 | 212 | 39 | 1 | 5 | 199 | 1 | 212 | 1.44e-97 | 281 |
| Msa1415970 | MtrunA17_Chr2g0303251 | 66.822 | 214 | 50 | 2 | 5 | 197 | 1 | 214 | 3.01e-94 | 273 |
| Msa1415970 | MtrunA17_Chr2g0300321 | 36.697 | 218 | 111 | 3 | 7 | 197 | 4 | 221 | 2.61e-29 | 108 |
| Msa1415970 | MtrunA17_Chr8g0343561 | 39.773 | 176 | 89 | 1 | 7 | 165 | 4 | 179 | 8.93e-29 | 107 |
| Msa1415970 | MtrunA17_Chr4g0028231 | 28.649 | 185 | 115 | 1 | 1 | 168 | 1 | 185 | 1.41e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1415970 | AT1G03950.1 | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.08e-106 | 305 |
| Msa1415970 | AT5G44560.1 | 67.727 | 220 | 44 | 2 | 5 | 197 | 1 | 220 | 1.98e-99 | 287 |
| Msa1415970 | AT5G44560.2 | 68.000 | 200 | 37 | 2 | 25 | 197 | 1 | 200 | 5.51e-89 | 260 |
| Msa1415970 | AT5G44560.4 | 71.910 | 178 | 33 | 1 | 5 | 165 | 1 | 178 | 4.58e-87 | 254 |
| Msa1415970 | AT5G44560.3 | 65.333 | 150 | 35 | 1 | 5 | 137 | 1 | 150 | 1.09e-62 | 192 |
| Msa1415970 | AT2G06530.1 | 37.273 | 220 | 110 | 3 | 6 | 197 | 4 | 223 | 2.99e-31 | 114 |
| Msa1415970 | AT2G06530.2 | 39.759 | 166 | 89 | 2 | 43 | 197 | 37 | 202 | 1.73e-24 | 95.9 |
| Msa1415970 | AT5G22950.1 | 26.201 | 229 | 138 | 3 | 1 | 198 | 1 | 229 | 1.40e-13 | 67.4 |
Find 37 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | tig0024289:+71239 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | tig0024289:+71220 | None:intergenic |
| GACAGAGTGTGTGAAGAATT+TGG | 0.284129 | tig0024289:-72978 | Msa1415970:five_prime_UTR |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | tig0024289:+69183 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | tig0024289:-71791 | Msa1415970:intron |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | tig0024289:+71990 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | tig0024289:-72004 | Msa1415970:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | tig0024289:-69736 | Msa1415970:intron |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | tig0024289:-72027 | Msa1415970:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | tig0024289:-69176 | Msa1415970:CDS |
| TCCATAGAAACAGAATTTGC+TGG | 0.445262 | tig0024289:-73029 | None:intergenic |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | tig0024289:-72735 | Msa1415970:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | tig0024289:-71220 | Msa1415970:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | tig0024289:-71812 | Msa1415970:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | tig0024289:+72712 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | tig0024289:-71823 | Msa1415970:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | tig0024289:-69756 | Msa1415970:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | tig0024289:-72917 | Msa1415970:intron |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | tig0024289:-71044 | Msa1415970:intron |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | tig0024289:-72033 | Msa1415970:CDS |
| GCACAGTCTTCTATTTCTGC+CGG | 0.512916 | tig0024289:-71832 | Msa1415970:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | tig0024289:-69607 | Msa1415970:CDS |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | tig0024289:+72706 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | tig0024289:-71089 | Msa1415970:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | tig0024289:-72038 | Msa1415970:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | tig0024289:-69173 | Msa1415970:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | tig0024289:-69570 | Msa1415970:intron |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | tig0024289:-72045 | Msa1415970:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | tig0024289:-71806 | Msa1415970:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | tig0024289:+71813 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | tig0024289:+72027 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | tig0024289:-71983 | Msa1415970:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | tig0024289:+71084 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | tig0024289:-72719 | Msa1415970:intron |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | tig0024289:-71077 | Msa1415970:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | tig0024289:-71963 | Msa1415970:intron |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | tig0024289:-69751 | Msa1415970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACATTTACATTTTTTTTT+TGG | - | tig0024289:69391-69410 | Msa1415970:intron | 10.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | + | tig0024289:69438-69457 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | + | tig0024289:69439-69458 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | - | tig0024289:70453-70472 | Msa1415970:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | + | tig0024289:71234-71253 | None:intergenic | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | + | tig0024289:71854-71873 | None:intergenic | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | - | tig0024289:72101-72120 | Msa1415970:intron | 15.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | - | tig0024289:72237-72256 | Msa1415970:intron | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | - | tig0024289:72257-72276 | Msa1415970:intron | 15.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | - | tig0024289:69571-69590 | Msa1415970:CDS | 20.0% |
| !!! | TAATTTTGGTACTTTGTTAT+CGG | - | tig0024289:70124-70143 | Msa1415970:intron | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | - | tig0024289:70332-70351 | Msa1415970:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | - | tig0024289:70511-70530 | Msa1415970:intron | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | - | tig0024289:70603-70622 | Msa1415970:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | - | tig0024289:71126-71145 | Msa1415970:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | - | tig0024289:71332-71351 | Msa1415970:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | - | tig0024289:71465-71484 | Msa1415970:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | - | tig0024289:71870-71889 | Msa1415970:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | - | tig0024289:71871-71890 | Msa1415970:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | + | tig0024289:72029-72048 | None:intergenic | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | + | tig0024289:72072-72091 | None:intergenic | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | - | tig0024289:72261-72280 | Msa1415970:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | + | tig0024289:72534-72553 | None:intergenic | 20.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | + | tig0024289:69220-69239 | None:intergenic | 25.0% |
| ! | ATTAATTAGATGTATTCCAC+AGG | - | tig0024289:69449-69468 | Msa1415970:intron | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | + | tig0024289:69560-69579 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | tig0024289:69807-69826 | Msa1415970:intron | 25.0% |
| ! | AACATTTGTAGTTTATGAGT+CGG | + | tig0024289:69873-69892 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTATC+GGG | - | tig0024289:70125-70144 | Msa1415970:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | - | tig0024289:70286-70305 | Msa1415970:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | - | tig0024289:70363-70382 | Msa1415970:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | - | tig0024289:70408-70427 | Msa1415970:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | - | tig0024289:70439-70458 | Msa1415970:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | - | tig0024289:70458-70477 | Msa1415970:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | - | tig0024289:70521-70540 | Msa1415970:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | - | tig0024289:70602-70621 | Msa1415970:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | + | tig0024289:70742-70761 | None:intergenic | 25.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | - | tig0024289:70756-70775 | Msa1415970:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | - | tig0024289:71138-71157 | Msa1415970:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | + | tig0024289:71358-71377 | None:intergenic | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | - | tig0024289:71371-71390 | Msa1415970:intron | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | + | tig0024289:71600-71619 | None:intergenic | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | + | tig0024289:71601-71620 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | - | tig0024289:71737-71756 | Msa1415970:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | - | tig0024289:71738-71757 | Msa1415970:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | - | tig0024289:71979-71998 | Msa1415970:CDS | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | - | tig0024289:72169-72188 | Msa1415970:intron | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | - | tig0024289:72170-72189 | Msa1415970:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | + | tig0024289:72444-72463 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | + | tig0024289:72530-72549 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | + | tig0024289:72622-72641 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | - | tig0024289:72697-72716 | Msa1415970:intron | 25.0% |
| ! | AATTCTAGACAAAAAGTTAG+GGG | + | tig0024289:72896-72915 | None:intergenic | 25.0% |
| ! | CAATTCTAGACAAAAAGTTA+GGG | + | tig0024289:72897-72916 | None:intergenic | 25.0% |
| ! | ACAATTCTAGACAAAAAGTT+AGG | + | tig0024289:72898-72917 | None:intergenic | 25.0% |
| ! | GAAATACATCAAAAACTTCA+AGG | + | tig0024289:73009-73028 | None:intergenic | 25.0% |
| AATGAATGATAAGGAAAGGA+AGG | + | tig0024289:69144-69163 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | + | tig0024289:69148-69167 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | + | tig0024289:69330-69349 | None:intergenic | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | + | tig0024289:69427-69446 | None:intergenic | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | + | tig0024289:69468-69487 | None:intergenic | 30.0% |
| ACAGGCATAGAAAAAGAAAT+TGG | - | tig0024289:69467-69486 | Msa1415970:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | - | tig0024289:69613-69632 | Msa1415970:intron | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | - | tig0024289:69614-69633 | Msa1415970:intron | 30.0% | |
| TATCTTGTTCCTAGTGATTT+AGG | - | tig0024289:69663-69682 | Msa1415970:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTCATCT+TGG | - | tig0024289:69772-69791 | Msa1415970:intron | 30.0% |
| AGTCGGTTAACAAAAGTTTA+TGG | + | tig0024289:69856-69875 | None:intergenic | 30.0% | |
| !! | ATTTTGGTACTTTGTTATCG+GGG | - | tig0024289:70126-70145 | Msa1415970:intron | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | + | tig0024289:70397-70416 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | - | tig0024289:70587-70606 | Msa1415970:intron | 30.0% |
| CATCACTACAGAGTAATTTA+TGG | + | tig0024289:70698-70717 | None:intergenic | 30.0% | |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | + | tig0024289:70784-70803 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | + | tig0024289:70797-70816 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | + | tig0024289:71080-71099 | None:intergenic | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | + | tig0024289:71092-71111 | None:intergenic | 30.0% |
| TGAAAATCTCAGCTATACAT+TGG | - | tig0024289:71100-71119 | Msa1415970:CDS | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | - | tig0024289:71101-71120 | Msa1415970:CDS | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | + | tig0024289:71195-71214 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | + | tig0024289:71200-71219 | None:intergenic | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | - | tig0024289:71262-71281 | Msa1415970:CDS | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | + | tig0024289:71366-71385 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | + | tig0024289:71377-71396 | None:intergenic | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | - | tig0024289:71520-71539 | Msa1415970:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | - | tig0024289:71573-71592 | Msa1415970:intron | 30.0% | |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | + | tig0024289:71641-71660 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | - | tig0024289:71699-71718 | Msa1415970:intron | 30.0% |
| TATTAGCAAGTTACACCTTT+AGG | + | tig0024289:71717-71736 | None:intergenic | 30.0% | |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | - | tig0024289:71786-71805 | Msa1415970:intron | 30.0% |
| GTACATTAGCAAATGTATCT+AGG | - | tig0024289:71895-71914 | Msa1415970:intron | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | - | tig0024289:72123-72142 | Msa1415970:intron | 30.0% | |
| AAGTTGCACATATGATTCTA+CGG | - | tig0024289:72196-72215 | Msa1415970:intron | 30.0% | |
| !!! | TTCTGTTTTATTTACACTCC+TGG | - | tig0024289:72403-72422 | Msa1415970:intron | 30.0% |
| GACATTAAGAAAATGCAGTA+TGG | + | tig0024289:72495-72514 | None:intergenic | 30.0% | |
| ! | TCTTTAAAAACTAAGGATGG+AGG | + | tig0024289:72527-72546 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | + | tig0024289:72621-72640 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | + | tig0024289:72623-72642 | None:intergenic | 30.0% |
| ATGTATGGTAAACATAGATG+TGG | + | tig0024289:72747-72766 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | + | tig0024289:72762-72781 | None:intergenic | 30.0% | |
| AAAAAGTTAGGGGTTTCTAA+GGG | + | tig0024289:72886-72905 | None:intergenic | 30.0% | |
| GAGTGATCGAATGAATGATA+AGG | + | tig0024289:69153-69172 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | - | tig0024289:69995-70014 | Msa1415970:intron | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | - | tig0024289:70029-70048 | Msa1415970:intron | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | + | tig0024289:70116-70135 | None:intergenic | 35.0% | |
| !! | TTTTGGTACTTTGTTATCGG+GGG | - | tig0024289:70127-70146 | Msa1415970:intron | 35.0% |
| CCTGCATGAATAATAAGCAT+AGG | + | tig0024289:70173-70192 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | - | tig0024289:70170-70189 | Msa1415970:intron | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | + | tig0024289:70313-70332 | None:intergenic | 35.0% | |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | + | tig0024289:70392-70411 | None:intergenic | 35.0% |
| CTTGTTCAAGGTTAAGGATT+AGG | - | tig0024289:70489-70508 | Msa1415970:intron | 35.0% | |
| GGAAACTTTGCAATCTGAAA+AGG | + | tig0024289:70547-70566 | None:intergenic | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | - | tig0024289:70562-70581 | Msa1415970:intron | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | - | tig0024289:70607-70626 | Msa1415970:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | + | tig0024289:70669-70688 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | - | tig0024289:70670-70689 | Msa1415970:intron | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | + | tig0024289:70736-70755 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | + | tig0024289:70952-70971 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | - | tig0024289:70956-70975 | Msa1415970:intron | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | - | tig0024289:70997-71016 | Msa1415970:intron | 35.0% | |
| ! | GCTGAGATTTTCAACAATTC+TGG | + | tig0024289:71093-71112 | None:intergenic | 35.0% |
| CCTAGCACTATTAATTCCTA+AGG | + | tig0024289:71201-71220 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | - | tig0024289:71198-71217 | Msa1415970:intron | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | - | tig0024289:71207-71226 | Msa1415970:intron | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | - | tig0024289:71417-71436 | Msa1415970:intron | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | + | tig0024289:71578-71597 | None:intergenic | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | + | tig0024289:71626-71645 | None:intergenic | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | - | tig0024289:71687-71706 | Msa1415970:intron | 35.0% |
| GGCTAATAGCTAAATTGACA+AGG | - | tig0024289:72122-72141 | Msa1415970:intron | 35.0% | |
| ! | TTTAAAAGAGTACAGACGAC+TGG | + | tig0024289:72357-72376 | None:intergenic | 35.0% |
| AGAATACTGAAAATGTCAGC+AGG | - | tig0024289:72463-72482 | Msa1415970:intron | 35.0% | |
| AACTAAGGATGGAGGAAAAA+TGG | + | tig0024289:72519-72538 | None:intergenic | 35.0% | |
| !! | TTTCTTTAAGACATAGAGGG+GGG | + | tig0024289:72619-72638 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | + | tig0024289:72620-72639 | None:intergenic | 35.0% |
| GGTAAACATAGATGTGGATT+CGG | + | tig0024289:72741-72760 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | + | tig0024289:72826-72845 | None:intergenic | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | + | tig0024289:72853-72872 | None:intergenic | 35.0% | |
| CAAAAAGTTAGGGGTTTCTA+AGG | + | tig0024289:72887-72906 | None:intergenic | 35.0% | |
| CTGAAATCCCAAAAAAACGT+GGG | + | tig0024289:72966-72985 | None:intergenic | 35.0% | |
| ! | TCTGAAATCCCAAAAAAACG+TGG | + | tig0024289:72967-72986 | None:intergenic | 35.0% |
| GACAGAGTGTGTGAAGAATT+TGG | - | tig0024289:69055-69074 | Msa1415970:three_prime_UTR | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | - | tig0024289:69116-69135 | Msa1415970:three_prime_UTR | 40.0% | |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | + | tig0024289:69120-69139 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | + | tig0024289:69134-69153 | None:intergenic | 40.0% |
| AAAGCGAAATTGAATGACGG+TGG | + | tig0024289:69217-69236 | None:intergenic | 40.0% | |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | + | tig0024289:69255-69274 | None:intergenic | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | + | tig0024289:69256-69275 | None:intergenic | 40.0% |
| CAGAGAGAGTAAACGTGAAA+TGG | - | tig0024289:69298-69317 | Msa1415970:intron | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | + | tig0024289:69324-69343 | None:intergenic | 40.0% | |
| CAAACAGAGCCTAAATCACT+AGG | + | tig0024289:69675-69694 | None:intergenic | 40.0% | |
| CTAGTGATTTAGGCTCTGTT+TGG | - | tig0024289:69673-69692 | Msa1415970:intron | 40.0% | |
| ! | TATCATCATGCACCTTTTGC+AGG | - | tig0024289:69965-69984 | Msa1415970:intron | 40.0% |
| CTGCGACTAAAATATTAGCC+AGG | - | tig0024289:69988-70007 | Msa1415970:intron | 40.0% | |
| ! | GGTCCATCTGATGCTAATTT+TGG | - | tig0024289:70110-70129 | Msa1415970:intron | 40.0% |
| ! | TTTGGTACTTTGTTATCGGG+GGG | - | tig0024289:70128-70147 | Msa1415970:intron | 40.0% |
| GGCAATGGAAGCTATGAATA+AGG | - | tig0024289:70242-70261 | Msa1415970:intron | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | + | tig0024289:70312-70331 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | - | tig0024289:70315-70334 | Msa1415970:intron | 40.0% | |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | - | tig0024289:70412-70431 | Msa1415970:intron | 40.0% |
| TTGCGGAAGGTCTTACAAAT+TGG | - | tig0024289:70425-70444 | Msa1415970:intron | 40.0% | |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | - | tig0024289:70483-70502 | Msa1415970:intron | 40.0% |
| TCCTTAACCTTGAACAAGCT+TGG | + | tig0024289:70487-70506 | None:intergenic | 40.0% | |
| ACTTTGCAATCTGAAAAGGC+CGG | + | tig0024289:70543-70562 | None:intergenic | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | + | tig0024289:70568-70587 | None:intergenic | 40.0% | |
| !! | CCATTTGTGCTGATTGTTTC+TGG | + | tig0024289:70816-70835 | None:intergenic | 40.0% |
| CCAGAAACAATCAGCACAAA+TGG | - | tig0024289:70813-70832 | Msa1415970:intron | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | - | tig0024289:70884-70903 | Msa1415970:intron | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | + | tig0024289:70897-70916 | None:intergenic | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | - | tig0024289:70989-71008 | Msa1415970:intron | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | + | tig0024289:71272-71291 | None:intergenic | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | + | tig0024289:71795-71814 | None:intergenic | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | + | tig0024289:71796-71815 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | - | tig0024289:72199-72218 | Msa1415970:intron | 40.0% | |
| !!! | TCAGAACTCCCACGTTTTTT+TGG | - | tig0024289:72955-72974 | Msa1415970:exon | 40.0% |
| !!! | CAGAACTCCCACGTTTTTTT+GGG | - | tig0024289:72956-72975 | Msa1415970:exon | 40.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | + | tig0024289:69128-69147 | None:intergenic | 45.0% |
| CGAAATTGAATGACGGTGGA+AGG | + | tig0024289:69213-69232 | None:intergenic | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | + | tig0024289:69275-69294 | None:intergenic | 45.0% | |
| AACCTCTGCATGGATAGAGA+AGG | + | tig0024289:69276-69295 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | - | tig0024289:69622-69641 | Msa1415970:intron | 45.0% | |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | + | tig0024289:69980-69999 | None:intergenic | 45.0% |
| TATTAGCCAGGCAGTTGGTT+AGG | - | tig0024289:70000-70019 | Msa1415970:intron | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | + | tig0024289:70046-70065 | None:intergenic | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | - | tig0024289:70086-70105 | Msa1415970:intron | 45.0% | |
| !! | GCACAGTCTTCTATTTCTGC+CGG | - | tig0024289:70201-70220 | Msa1415970:intron | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | - | tig0024289:70210-70229 | Msa1415970:intron | 45.0% |
| CTTACTAGCACCTTTCATGC+CGG | + | tig0024289:70223-70242 | None:intergenic | 45.0% | |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | - | tig0024289:70227-70246 | Msa1415970:intron | 45.0% |
| ATGTATCATGTATCGGGCCA+TGG | + | tig0024289:70306-70325 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | - | tig0024289:70477-70496 | Msa1415970:intron | 45.0% |
| AGATGCCATCGATGATGTCT+TGG | - | tig0024289:70944-70963 | Msa1415970:intron | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | - | tig0024289:71106-71125 | Msa1415970:CDS | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | + | tig0024289:71177-71196 | None:intergenic | 45.0% | |
| ! | GTTGCATTTTATGCACCCCA+GGG | - | tig0024289:71393-71412 | Msa1415970:intron | 45.0% |
| TTCTACGTGTGTTATCCCTG+GGG | + | tig0024289:71411-71430 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | + | tig0024289:71412-71431 | None:intergenic | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | + | tig0024289:71413-71432 | None:intergenic | 45.0% | |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | - | tig0024289:71756-71775 | Msa1415970:intron | 45.0% |
| TGGCAGGTACTCGATGAAAT+CGG | - | tig0024289:72277-72296 | Msa1415970:intron | 45.0% | |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | - | tig0024289:72305-72324 | Msa1415970:intron | 45.0% |
| CAGTTATCAGCAGCTCCAAA+AGG | - | tig0024289:72426-72445 | Msa1415970:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | + | tig0024289:72842-72861 | None:intergenic | 45.0% | |
| !! | TGATGACATCGAGAAGCGTT+TGG | - | tig0024289:72857-72876 | Msa1415970:intron | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | + | tig0024289:72098-72117 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | - | tig0024289:72097-72116 | Msa1415970:intron | 5.0% |
| TCTGCATGGATAGAGAAGGG+GGG | + | tig0024289:69272-69291 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | + | tig0024289:69273-69292 | None:intergenic | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | + | tig0024289:69274-69293 | None:intergenic | 50.0% | |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | + | tig0024289:69286-69305 | None:intergenic | 50.0% |
| GAAATGGCCAATGCCACTAG+AGG | - | tig0024289:69314-69333 | Msa1415970:intron | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | - | tig0024289:70050-70069 | Msa1415970:intron | 50.0% | |
| AGGCATAGCAACTCACACAC+AGG | - | tig0024289:70070-70089 | Msa1415970:intron | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | - | tig0024289:70089-70108 | Msa1415970:intron | 50.0% | |
| ! | GTACTTTGTTATCGGGGGGT+GGG | - | tig0024289:70132-70151 | Msa1415970:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | - | tig0024289:70221-70240 | Msa1415970:intron | 50.0% |
| ATCCTGTGTTCCGATCCCTT+AGG | - | tig0024289:71182-71201 | Msa1415970:intron | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | + | tig0024289:71187-71206 | None:intergenic | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | + | tig0024289:71279-71298 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | - | tig0024289:71392-71411 | Msa1415970:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | - | tig0024289:72301-72320 | Msa1415970:intron | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | - | tig0024289:72860-72879 | Msa1415970:intron | 50.0% |
| CCCCTTCTCTATCCATGCAG+AGG | - | tig0024289:69271-69290 | Msa1415970:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | + | tig0024289:70009-70028 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | - | tig0024289:70006-70025 | Msa1415970:intron | 55.0% | |
| ! | GGTACTTTGTTATCGGGGGG+TGG | - | tig0024289:70131-70150 | Msa1415970:intron | 55.0% |
| GGTACTCGATGAAATCGGCG+TGG | - | tig0024289:72282-72301 | Msa1415970:intron | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | + | tig0024289:72424-72443 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | + | tig0024289:72601-72620 | None:intergenic | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | + | tig0024289:72606-72625 | None:intergenic | 55.0% | |
| AGACATAGAGGGGGGACTGT+TGG | + | tig0024289:72611-72630 | None:intergenic | 55.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | - | tig0024289:72297-72316 | Msa1415970:intron | 60.0% |
| GGGGGGACTGTTGGAATGGA+TGG | + | tig0024289:72602-72621 | None:intergenic | 60.0% | |
| CGCGCGCACACACACACACT+TGG | - | tig0024289:71945-71964 | Msa1415970:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024289 | gene | 69014 | 73041 | 69014 | ID=Msa1415970;Name=Msa1415970 |
| tig0024289 | mRNA | 69014 | 73041 | 69014 | ID=Msa1415970-mRNA-1;Parent=Msa1415970;Name=Msa1415970-mRNA-1;_AED=0.12;_eAED=0.12;_QI=78|0.88|1|1|0.88|0.9|10|142|199 |
| tig0024289 | exon | 69014 | 69207 | 69014 | ID=Msa1415970-mRNA-1:exon:22712;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 69571 | 69626 | 69571 | ID=Msa1415970-mRNA-1:exon:22711;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 69737 | 69772 | 69737 | ID=Msa1415970-mRNA-1:exon:22710;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 71045 | 71125 | 71045 | ID=Msa1415970-mRNA-1:exon:22709;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 71212 | 71283 | 71212 | ID=Msa1415970-mRNA-1:exon:22708;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 71792 | 71863 | 71792 | ID=Msa1415970-mRNA-1:exon:22707;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 71964 | 72068 | 71964 | ID=Msa1415970-mRNA-1:exon:22706;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 72550 | 72584 | 72550 | ID=Msa1415970-mRNA-1:exon:22705;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 72720 | 72764 | 72720 | ID=Msa1415970-mRNA-1:exon:22704;Parent=Msa1415970-mRNA-1 |
| tig0024289 | exon | 72918 | 73041 | 72918 | ID=Msa1415970-mRNA-1:exon:22703;Parent=Msa1415970-mRNA-1 |
| tig0024289 | five_prime_UTR | 72964 | 73041 | 72964 | ID=Msa1415970-mRNA-1:five_prime_utr;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 72918 | 72963 | 72918 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 72720 | 72764 | 72720 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 72550 | 72584 | 72550 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 71964 | 72068 | 71964 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 71792 | 71863 | 71792 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 71212 | 71283 | 71212 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 71045 | 71125 | 71045 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 69737 | 69772 | 69737 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 69571 | 69626 | 69571 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | CDS | 69156 | 69207 | 69156 | ID=Msa1415970-mRNA-1:cds;Parent=Msa1415970-mRNA-1 |
| tig0024289 | three_prime_UTR | 69014 | 69155 | 69014 | ID=Msa1415970-mRNA-1:three_prime_utr;Parent=Msa1415970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
