Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122790 | XP_024635334.1 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.50e-135 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122790 | sp|Q941D5|VPS2C_ARATH | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.06e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122790 | A0A396JNZ0 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 7.18e-136 | 388 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092040 | Msa0122790 | 0.928693 | 2.011112e-92 | -8.615850e-47 |
| Msa0092130 | Msa0122790 | 0.934799 | 2.305560e-96 | -8.615850e-47 |
| Msa0122790 | Msa1415970 | 0.855026 | 8.312366e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122790 | MtrunA17_Chr1g0183621 | 91.667 | 216 | 1 | 1 | 1 | 199 | 1 | 216 | 1.38e-139 | 388 |
| Msa0122790 | MtrunA17_Chr7g0261511 | 73.585 | 212 | 39 | 1 | 5 | 199 | 1 | 212 | 1.44e-97 | 281 |
| Msa0122790 | MtrunA17_Chr2g0303251 | 66.822 | 214 | 50 | 2 | 5 | 197 | 1 | 214 | 3.01e-94 | 273 |
| Msa0122790 | MtrunA17_Chr2g0300321 | 36.697 | 218 | 111 | 3 | 7 | 197 | 4 | 221 | 2.61e-29 | 108 |
| Msa0122790 | MtrunA17_Chr8g0343561 | 39.773 | 176 | 89 | 1 | 7 | 165 | 4 | 179 | 8.93e-29 | 107 |
| Msa0122790 | MtrunA17_Chr4g0028231 | 28.649 | 185 | 115 | 1 | 1 | 168 | 1 | 185 | 1.41e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122790 | AT1G03950.1 | 71.905 | 210 | 42 | 1 | 5 | 197 | 1 | 210 | 1.08e-106 | 305 |
| Msa0122790 | AT5G44560.1 | 67.727 | 220 | 44 | 2 | 5 | 197 | 1 | 220 | 1.98e-99 | 287 |
| Msa0122790 | AT5G44560.2 | 68.000 | 200 | 37 | 2 | 25 | 197 | 1 | 200 | 5.51e-89 | 260 |
| Msa0122790 | AT5G44560.4 | 71.910 | 178 | 33 | 1 | 5 | 165 | 1 | 178 | 4.58e-87 | 254 |
| Msa0122790 | AT5G44560.3 | 65.333 | 150 | 35 | 1 | 5 | 137 | 1 | 150 | 1.09e-62 | 192 |
| Msa0122790 | AT2G06530.1 | 37.273 | 220 | 110 | 3 | 6 | 197 | 4 | 223 | 2.99e-31 | 114 |
| Msa0122790 | AT2G06530.2 | 39.759 | 166 | 89 | 2 | 43 | 197 | 37 | 202 | 1.73e-24 | 95.9 |
| Msa0122790 | AT5G22950.1 | 26.201 | 229 | 138 | 3 | 1 | 198 | 1 | 229 | 1.40e-13 | 67.4 |
Find 37 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAACTCTTGAATAATTT+TGG | 0.113072 | 1_3:-49634461 | None:intergenic |
| CCATTTGTGCTGATTGTTTC+TGG | 0.121554 | 1_3:-49634480 | None:intergenic |
| GACAGAGTGTGTGAAGAATT+TGG | 0.284129 | 1_3:+49632743 | Msa0122790:five_prime_UTR |
| CTTCTCGATGTCATCAATTT+CGG | 0.344181 | 1_3:-49636517 | None:intergenic |
| GGCAATGGAAGCTATGAATA+AGG | 0.394968 | 1_3:+49633909 | Msa0122790:CDS |
| TTTGAGCTCGACTACCTTGA+AGG | 0.406647 | 1_3:-49633710 | None:intergenic |
| CAACAAATTGCTAACCTTCA+AGG | 0.417491 | 1_3:+49633696 | Msa0122790:CDS |
| CGGCGTGGATGTTGCTTCAC+AGG | 0.421005 | 1_3:+49635964 | Msa0122790:CDS |
| CCAGGCAGTTGGTTAGGCTT+AGG | 0.424613 | 1_3:+49633673 | Msa0122790:CDS |
| TGATGACATCGAGAAGCGTT+TGG | 0.440202 | 1_3:+49636524 | Msa0122790:CDS |
| TCCATAGAAACAGAATTTGC+TGG | 0.445262 | 1_3:+49632692 | None:intergenic |
| CAGAGAGAGTAAACGTGAAA+TGG | 0.451306 | 1_3:+49632978 | Msa0122790:CDS |
| CCAGAAACAATCAGCACAAA+TGG | 0.451902 | 1_3:+49634480 | Msa0122790:CDS |
| CGGCATGAAAGGTGCTAGTA+AGG | 0.457818 | 1_3:+49633888 | Msa0122790:CDS |
| TACATTACCTCTAGTGGCAT+TGG | 0.462651 | 1_3:-49633001 | None:intergenic |
| TCTATTTCTGCCGGCATGAA+AGG | 0.465107 | 1_3:+49633877 | Msa0122790:CDS |
| TGGCAGGTACTCGATGAAAT+CGG | 0.471009 | 1_3:+49635944 | Msa0122790:intron |
| TCCAAGAAACCTAAGCCAAA+AGG | 0.480325 | 1_3:+49632804 | Msa0122790:CDS |
| GACAGAAGATCTGACAAATC+AGG | 0.492127 | 1_3:+49634656 | Msa0122790:CDS |
| TATTAGCCAGGCAGTTGGTT+AGG | 0.498748 | 1_3:+49633667 | Msa0122790:CDS |
| GCACAGTCTTCTATTTCTGC+CGG | 0.512916 | 1_3:+49633868 | Msa0122790:CDS |
| CAGTTATCAGCAGCTCCAAA+AGG | 0.534197 | 1_3:+49636093 | Msa0122790:intron |
| AGTAATTACATTACCTCTAG+TGG | 0.549933 | 1_3:-49633007 | None:intergenic |
| AGATGCCATCGATGATGTCT+TGG | 0.557065 | 1_3:+49634611 | Msa0122790:CDS |
| TAAAATATTAGCCAGGCAGT+TGG | 0.568904 | 1_3:+49633662 | Msa0122790:CDS |
| TGACATCGAGAAGCGTTTGG+CGG | 0.572824 | 1_3:+49636527 | Msa0122790:CDS |
| AGAATACTGAAAATGTCAGC+AGG | 0.574074 | 1_3:+49636130 | Msa0122790:CDS |
| CTGCGACTAAAATATTAGCC+AGG | 0.584824 | 1_3:+49633655 | Msa0122790:CDS |
| GAAAGGTGCTAGTAAGGCAA+TGG | 0.588411 | 1_3:+49633894 | Msa0122790:CDS |
| CTTACTAGCACCTTTCATGC+CGG | 0.602682 | 1_3:-49633887 | None:intergenic |
| CCTAAGCCTAACCAACTGCC+TGG | 0.602720 | 1_3:-49633673 | None:intergenic |
| GGTAGTCGAGCTCAAATGAG+AGG | 0.622813 | 1_3:+49633717 | Msa0122790:CDS |
| ATTATCCAAGACATCATCGA+TGG | 0.636937 | 1_3:-49634616 | None:intergenic |
| GAAATGGCCAATGCCACTAG+AGG | 0.655907 | 1_3:+49632994 | Msa0122790:CDS |
| TGATGTCTTGGATAATGATG+AGG | 0.669181 | 1_3:+49634623 | Msa0122790:CDS |
| AGGCATAGCAACTCACACAC+AGG | 0.671175 | 1_3:+49633737 | Msa0122790:CDS |
| GGTACTCGATGAAATCGGCG+TGG | 0.702596 | 1_3:+49635949 | Msa0122790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTACATTTACATTTTTTTT+TGG | + | chr1_3:49633058-49633077 | Msa0122790:intron | 10.0% |
| !! | CTAATTAATTAATACAGTAA+GGG | - | chr1_3:49633105-49633124 | None:intergenic | 15.0% |
| !! | TCTAATTAATTAATACAGTA+AGG | - | chr1_3:49633106-49633125 | None:intergenic | 15.0% |
| !! | TTTAATTGGATGTTTATTAA+TGG | + | chr1_3:49634120-49634139 | Msa0122790:intron | 15.0% |
| !! | TTAAAGCTAAGATTTAAATT+TGG | - | chr1_3:49634901-49634920 | None:intergenic | 15.0% |
| !!! | TATTAGCAAATTACAATTTT+AGG | - | chr1_3:49635521-49635540 | None:intergenic | 15.0% |
| !!! | AAATACTTTAAATTTTTGGT+TGG | + | chr1_3:49635768-49635787 | Msa0122790:intron | 15.0% |
| !! | AAATTACAAAAAACAATTGA+TGG | + | chr1_3:49635904-49635923 | Msa0122790:intron | 15.0% |
| !!! | TGGAAATTTTATTTACTTTT+TGG | + | chr1_3:49635924-49635943 | Msa0122790:intron | 15.0% |
| !!! | TTCTCATGTTTTTTATGATT+AGG | + | chr1_3:49633238-49633257 | Msa0122790:intron | 20.0% |
| !!! | TAATTTTGGTACTTTGTTAT+CGG | + | chr1_3:49633791-49633810 | Msa0122790:intron | 20.0% |
| !!! | AGTTGGTTTTATTTTAGTAT+TGG | + | chr1_3:49633999-49634018 | Msa0122790:intron | 20.0% |
| !!! | GAGATAAAGTTGATATTTAT+AGG | + | chr1_3:49634178-49634197 | Msa0122790:intron | 20.0% |
| !! | TAAAAGGAAATTAATGCATT+GGG | + | chr1_3:49634270-49634289 | Msa0122790:intron | 20.0% |
| !! | TGGTTAATTAATTTCTTACT+TGG | + | chr1_3:49634793-49634812 | Msa0122790:intron | 20.0% |
| !! | GAAATCAATAGAAAATTACA+TGG | + | chr1_3:49634999-49635018 | Msa0122790:intron | 20.0% |
| !!! | TGTTTGTTCTATATGATTTT+AGG | + | chr1_3:49635132-49635151 | Msa0122790:intron | 20.0% |
| !!! | AATATACTTCTAAAAACAAG+TGG | + | chr1_3:49635537-49635556 | Msa0122790:intron | 20.0% |
| !!! | ATATACTTCTAAAAACAAGT+GGG | + | chr1_3:49635538-49635557 | Msa0122790:intron | 20.0% |
| !! | GTTTGATATCAAAATAGTTA+AGG | - | chr1_3:49635696-49635715 | None:intergenic | 20.0% |
| !!! | ACTTGATTTGCTTAAAAATT+AGG | - | chr1_3:49635739-49635758 | None:intergenic | 20.0% |
| !!! | AATTTTATTTACTTTTTGGC+AGG | + | chr1_3:49635928-49635947 | Msa0122790:intron | 20.0% |
| !!! | CTAAACTTCTTTAAAAACTA+AGG | - | chr1_3:49636201-49636220 | None:intergenic | 20.0% |
| ! | AATAAAGCGAAATTGAATGA+CGG | - | chr1_3:49632900-49632919 | None:intergenic | 25.0% |
| ! | ATTAATTAGATGTATTCCAC+AGG | + | chr1_3:49633116-49633135 | Msa0122790:intron | 25.0% |
| ! | ACATGAGAAACTTAAACAAT+AGG | - | chr1_3:49633227-49633246 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr1_3:49633474-49633493 | Msa0122790:intron | 25.0% |
| ! | AACATTTGTAGTTTATGAGT+CGG | - | chr1_3:49633540-49633559 | None:intergenic | 25.0% |
| !!! | AATTTTGGTACTTTGTTATC+GGG | + | chr1_3:49633792-49633811 | Msa0122790:intron | 25.0% |
| ! | TTGATTATATTTGATGTCCA+TGG | + | chr1_3:49633953-49633972 | Msa0122790:intron | 25.0% |
| ! | TACAATAGCAAGATGATATT+TGG | + | chr1_3:49634030-49634049 | Msa0122790:intron | 25.0% |
| !!! | AAAATGAAGCTTTTGTTTTG+CGG | + | chr1_3:49634075-49634094 | Msa0122790:intron | 25.0% |
| !!! | ACAAATTGGTGCATTTTAAT+TGG | + | chr1_3:49634106-49634125 | Msa0122790:intron | 25.0% |
| ! | TTGGATGTTTATTAATGGAA+TGG | + | chr1_3:49634125-49634144 | Msa0122790:intron | 25.0% |
| ! | TGATATTTATAGGTTATTGC+CGG | + | chr1_3:49634188-49634207 | Msa0122790:intron | 25.0% |
| ! | CTAAAAGGAAATTAATGCAT+TGG | + | chr1_3:49634269-49634288 | Msa0122790:intron | 25.0% |
| ! | TTTCTTTAAATTCAGCACAA+CGG | - | chr1_3:49634409-49634428 | None:intergenic | 25.0% |
| ! | AAGAAATTATTTGCAGCAAA+TGG | + | chr1_3:49634423-49634442 | Msa0122790:intron | 25.0% |
| ! | TTCTTACTTGGTTATTTACA+TGG | + | chr1_3:49634805-49634824 | Msa0122790:intron | 25.0% |
| ! | AAGGAAATACTATGGTTTAT+AGG | - | chr1_3:49635025-49635044 | None:intergenic | 25.0% |
| ! | TTTCCTTCTTAAGAGTTATA+AGG | + | chr1_3:49635038-49635057 | Msa0122790:intron | 25.0% |
| !! | ACATAGAAGCAGTAATTTTT+GGG | - | chr1_3:49635267-49635286 | None:intergenic | 25.0% |
| !! | TACATAGAAGCAGTAATTTT+TGG | - | chr1_3:49635268-49635287 | None:intergenic | 25.0% |
| !!! | TATTTTTTCTAAAGAACACG+TGG | + | chr1_3:49635404-49635423 | Msa0122790:intron | 25.0% |
| !!! | ATTTTTTCTAAAGAACACGT+GGG | + | chr1_3:49635405-49635424 | Msa0122790:intron | 25.0% |
| !!! | ACACGATTTTTGTTTTATCT+AGG | + | chr1_3:49635646-49635665 | Msa0122790:intron | 25.0% |
| !! | ATAGAAAGTAAGAGTATAGA+TGG | + | chr1_3:49635836-49635855 | Msa0122790:intron | 25.0% |
| !! | TAGAAAGTAAGAGTATAGAT+GGG | + | chr1_3:49635837-49635856 | Msa0122790:intron | 25.0% |
| !!! | TTTGTTTTGATACTTCCTTT+TGG | - | chr1_3:49636111-49636130 | None:intergenic | 25.0% |
| !! | ACTTCTTTAAAAACTAAGGA+TGG | - | chr1_3:49636197-49636216 | None:intergenic | 25.0% |
| !!! | AACTTTCTTTAAGACATAGA+GGG | - | chr1_3:49636289-49636308 | None:intergenic | 25.0% |
| ! | TAAGTTGTGAAGAATTTACT+TGG | + | chr1_3:49636364-49636383 | Msa0122790:intron | 25.0% |
| ! | AATTCTAGACAAAAAGTTAG+GGG | - | chr1_3:49636563-49636582 | None:intergenic | 25.0% |
| ! | CAATTCTAGACAAAAAGTTA+GGG | - | chr1_3:49636564-49636583 | None:intergenic | 25.0% |
| ! | ACAATTCTAGACAAAAAGTT+AGG | - | chr1_3:49636565-49636584 | None:intergenic | 25.0% |
| ! | GAAATACATCAAAAACTTCA+AGG | - | chr1_3:49636676-49636695 | None:intergenic | 25.0% |
| AATGAATGATAAGGAAAGGA+AGG | - | chr1_3:49632832-49632851 | None:intergenic | 30.0% | |
| ATCGAATGAATGATAAGGAA+AGG | - | chr1_3:49632836-49632855 | None:intergenic | 30.0% | |
| AGTAATTACATTACCTCTAG+TGG | - | chr1_3:49633010-49633029 | None:intergenic | 30.0% | |
| ATACAGTAAGGGATTATAAG+TGG | - | chr1_3:49633094-49633113 | None:intergenic | 30.0% | |
| ! | AATTTCTTTTTCTATGCCTG+TGG | - | chr1_3:49633135-49633154 | None:intergenic | 30.0% |
| ACAGGCATAGAAAAAGAAAT+TGG | + | chr1_3:49633134-49633153 | Msa0122790:intron | 30.0% | |
| GATAAAGAAAACTGCTAAGA+CGG | + | chr1_3:49633280-49633299 | Msa0122790:intron | 30.0% | |
| ATAAAGAAAACTGCTAAGAC+GGG | + | chr1_3:49633281-49633300 | Msa0122790:intron | 30.0% | |
| TATCTTGTTCCTAGTGATTT+AGG | + | chr1_3:49633330-49633349 | Msa0122790:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTCATCT+TGG | + | chr1_3:49633439-49633458 | Msa0122790:intron | 30.0% |
| AGTCGGTTAACAAAAGTTTA+TGG | - | chr1_3:49633523-49633542 | None:intergenic | 30.0% | |
| !! | ATTTTGGTACTTTGTTATCG+GGG | + | chr1_3:49633793-49633812 | Msa0122790:intron | 30.0% |
| ! | CTTCATTTTCAATCTTTTGC+AGG | - | chr1_3:49634064-49634083 | None:intergenic | 30.0% |
| ! | GAGATTGTTCTTTTGCTAAA+AGG | + | chr1_3:49634254-49634273 | Msa0122790:intron | 30.0% |
| CATCACTACAGAGTAATTTA+TGG | - | chr1_3:49634365-49634384 | None:intergenic | 30.0% | |
| !!! | ATAATTTTGGCTTGCTTTGT+AGG | - | chr1_3:49634451-49634470 | None:intergenic | 30.0% |
| ! | CTGGAACTCTTGAATAATTT+TGG | - | chr1_3:49634464-49634483 | None:intergenic | 30.0% |
| ! | ACAATTCTGGGAAATTAATC+AGG | - | chr1_3:49634747-49634766 | None:intergenic | 30.0% |
| ! | CTGAGATTTTCAACAATTCT+GGG | - | chr1_3:49634759-49634778 | None:intergenic | 30.0% |
| TGAAAATCTCAGCTATACAT+TGG | + | chr1_3:49634767-49634786 | Msa0122790:intron | 30.0% | |
| GAAAATCTCAGCTATACATT+GGG | + | chr1_3:49634768-49634787 | Msa0122790:intron | 30.0% | |
| ACTATTAATTCCTAAGGGAT+CGG | - | chr1_3:49634862-49634881 | None:intergenic | 30.0% | |
| CTAGCACTATTAATTCCTAA+GGG | - | chr1_3:49634867-49634886 | None:intergenic | 30.0% | |
| TAGTAATCCATAATCCAGTT+AGG | + | chr1_3:49634929-49634948 | Msa0122790:intron | 30.0% | |
| CTCTTAAGAAGGAAATACTA+TGG | - | chr1_3:49635033-49635052 | None:intergenic | 30.0% | |
| CAACCTTATAACTCTTAAGA+AGG | - | chr1_3:49635044-49635063 | None:intergenic | 30.0% | |
| GTTGTATCATGCATAAGTAT+TGG | + | chr1_3:49635187-49635206 | Msa0122790:intron | 30.0% | |
| TACCACAAACATAAAGACAT+AGG | + | chr1_3:49635240-49635259 | Msa0122790:intron | 30.0% | |
| !!! | CTAGCTTACTTGTTTTAAAG+TGG | - | chr1_3:49635308-49635327 | None:intergenic | 30.0% |
| ! | CAATTTTGTGGTATTCCTAA+AGG | + | chr1_3:49635366-49635385 | Msa0122790:intron | 30.0% |
| TATTAGCAAGTTACACCTTT+AGG | - | chr1_3:49635384-49635403 | None:intergenic | 30.0% | |
| !!! | TATAGTCCCACTTGTTTTTT+TGG | + | chr1_3:49635453-49635472 | Msa0122790:intron | 30.0% |
| GTACATTAGCAAATGTATCT+AGG | + | chr1_3:49635562-49635581 | Msa0122790:intron | 30.0% | |
| GCTAATAGCTAAATTGACAA+GGG | + | chr1_3:49635790-49635809 | Msa0122790:intron | 30.0% | |
| AAGTTGCACATATGATTCTA+CGG | + | chr1_3:49635863-49635882 | Msa0122790:intron | 30.0% | |
| !!! | TTCTGTTTTATTTACACTCC+TGG | + | chr1_3:49636070-49636089 | Msa0122790:intron | 30.0% |
| GACATTAAGAAAATGCAGTA+TGG | - | chr1_3:49636162-49636181 | None:intergenic | 30.0% | |
| ! | TCTTTAAAAACTAAGGATGG+AGG | - | chr1_3:49636194-49636213 | None:intergenic | 30.0% |
| !! | ACTTTCTTTAAGACATAGAG+GGG | - | chr1_3:49636288-49636307 | None:intergenic | 30.0% |
| !! | GAACTTTCTTTAAGACATAG+AGG | - | chr1_3:49636290-49636309 | None:intergenic | 30.0% |
| ATGTATGGTAAACATAGATG+TGG | - | chr1_3:49636414-49636433 | None:intergenic | 30.0% | |
| TCACAAGAAATTCACATGTA+TGG | - | chr1_3:49636429-49636448 | None:intergenic | 30.0% | |
| AAAAAGTTAGGGGTTTCTAA+GGG | - | chr1_3:49636553-49636572 | None:intergenic | 30.0% | |
| GAGTGATCGAATGAATGATA+AGG | - | chr1_3:49632841-49632860 | None:intergenic | 35.0% | |
| TAAAATATTAGCCAGGCAGT+TGG | + | chr1_3:49633662-49633681 | Msa0122790:CDS | 35.0% | |
| CAACAAATTGCTAACCTTCA+AGG | + | chr1_3:49633696-49633715 | Msa0122790:CDS | 35.0% | |
| GTACCAAAATTAGCATCAGA+TGG | - | chr1_3:49633783-49633802 | None:intergenic | 35.0% | |
| !! | TTTTGGTACTTTGTTATCGG+GGG | + | chr1_3:49633794-49633813 | Msa0122790:intron | 35.0% |
| CCTGCATGAATAATAAGCAT+AGG | - | chr1_3:49633840-49633859 | None:intergenic | 35.0% | |
| CCTATGCTTATTATTCATGC+AGG | + | chr1_3:49633837-49633856 | Msa0122790:intron | 35.0% | |
| TGCAGCAATGTATCATGTAT+CGG | - | chr1_3:49633980-49633999 | None:intergenic | 35.0% | |
| ! | TTTTCAATCTTTTGCAGGAG+AGG | - | chr1_3:49634059-49634078 | None:intergenic | 35.0% |
| CTTGTTCAAGGTTAAGGATT+AGG | + | chr1_3:49634156-49634175 | Msa0122790:intron | 35.0% | |
| GGAAACTTTGCAATCTGAAA+AGG | - | chr1_3:49634214-49634233 | None:intergenic | 35.0% | |
| TTTCCAATGAATGATCGTGA+AGG | + | chr1_3:49634229-49634248 | Msa0122790:intron | 35.0% | |
| AGGAAATTAATGCATTGGGA+AGG | + | chr1_3:49634274-49634293 | Msa0122790:intron | 35.0% | |
| ATGTCAATTTATGCAGCGTT+AGG | - | chr1_3:49634336-49634355 | None:intergenic | 35.0% | |
| ACGCTGCATAAATTGACATT+AGG | + | chr1_3:49634337-49634356 | Msa0122790:intron | 35.0% | |
| TAAATTCAGCACAACGGAAA+TGG | - | chr1_3:49634403-49634422 | None:intergenic | 35.0% | |
| ATTATCCAAGACATCATCGA+TGG | - | chr1_3:49634619-49634638 | None:intergenic | 35.0% | |
| TGATGTCTTGGATAATGATG+AGG | + | chr1_3:49634623-49634642 | Msa0122790:CDS | 35.0% | |
| ATCTGACAAATCAGGTACTA+AGG | + | chr1_3:49634664-49634683 | Msa0122790:intron | 35.0% | |
| ! | GCTGAGATTTTCAACAATTC+TGG | - | chr1_3:49634760-49634779 | None:intergenic | 35.0% |
| CCTAGCACTATTAATTCCTA+AGG | - | chr1_3:49634868-49634887 | None:intergenic | 35.0% | |
| CCTTAGGAATTAATAGTGCT+AGG | + | chr1_3:49634865-49634884 | Msa0122790:intron | 35.0% | |
| TTAATAGTGCTAGGAAATGC+AGG | + | chr1_3:49634874-49634893 | Msa0122790:intron | 35.0% | |
| TAACACACGTAGAACAACAT+AGG | + | chr1_3:49635084-49635103 | Msa0122790:intron | 35.0% | |
| GTCCTATGTCTTTATGTTTG+TGG | - | chr1_3:49635245-49635264 | None:intergenic | 35.0% | |
| TAAAGTGGCAGTACATTACT+TGG | - | chr1_3:49635293-49635312 | None:intergenic | 35.0% | |
| ! | GCTAGCAAGTTACAATTTTG+TGG | + | chr1_3:49635354-49635373 | Msa0122790:intron | 35.0% |
| GGCTAATAGCTAAATTGACA+AGG | + | chr1_3:49635789-49635808 | Msa0122790:intron | 35.0% | |
| ! | TTTAAAAGAGTACAGACGAC+TGG | - | chr1_3:49636024-49636043 | None:intergenic | 35.0% |
| AGAATACTGAAAATGTCAGC+AGG | + | chr1_3:49636130-49636149 | Msa0122790:CDS | 35.0% | |
| AACTAAGGATGGAGGAAAAA+TGG | - | chr1_3:49636186-49636205 | None:intergenic | 35.0% | |
| !! | TTTCTTTAAGACATAGAGGG+GGG | - | chr1_3:49636286-49636305 | None:intergenic | 35.0% |
| !! | CTTTCTTTAAGACATAGAGG+GGG | - | chr1_3:49636287-49636306 | None:intergenic | 35.0% |
| GGTAAACATAGATGTGGATT+CGG | - | chr1_3:49636408-49636427 | None:intergenic | 35.0% | |
| GCAATGGCATCAAATTTCAA+AGG | - | chr1_3:49636493-49636512 | None:intergenic | 35.0% | |
| CTTCTCGATGTCATCAATTT+CGG | - | chr1_3:49636520-49636539 | None:intergenic | 35.0% | |
| CAAAAAGTTAGGGGTTTCTA+AGG | - | chr1_3:49636554-49636573 | None:intergenic | 35.0% | |
| CTGAAATCCCAAAAAAACGT+GGG | - | chr1_3:49636633-49636652 | None:intergenic | 35.0% | |
| ! | TCTGAAATCCCAAAAAAACG+TGG | - | chr1_3:49636634-49636653 | None:intergenic | 35.0% |
| GACAGAGTGTGTGAAGAATT+TGG | + | chr1_3:49632743-49632762 | Msa0122790:five_prime_UTR | 40.0% | |
| TCCAAGAAACCTAAGCCAAA+AGG | + | chr1_3:49632804-49632823 | Msa0122790:CDS | 40.0% | |
| !!! | ACCTTTTGGCTTAGGTTTCT+TGG | - | chr1_3:49632808-49632827 | None:intergenic | 40.0% |
| ! | AAGGAAAGGAAGGAACCTTT+TGG | - | chr1_3:49632822-49632841 | None:intergenic | 40.0% |
| AAAGCGAAATTGAATGACGG+TGG | - | chr1_3:49632897-49632916 | None:intergenic | 40.0% | |
| !! | GGGGGGTGTTAATAGAAAAA+GGG | - | chr1_3:49632935-49632954 | None:intergenic | 40.0% |
| !! | AGGGGGGTGTTAATAGAAAA+AGG | - | chr1_3:49632936-49632955 | None:intergenic | 40.0% |
| CAGAGAGAGTAAACGTGAAA+TGG | + | chr1_3:49632978-49632997 | Msa0122790:CDS | 40.0% | |
| TACATTACCTCTAGTGGCAT+TGG | - | chr1_3:49633004-49633023 | None:intergenic | 40.0% | |
| CAAACAGAGCCTAAATCACT+AGG | - | chr1_3:49633342-49633361 | None:intergenic | 40.0% | |
| CTAGTGATTTAGGCTCTGTT+TGG | + | chr1_3:49633340-49633359 | Msa0122790:intron | 40.0% | |
| ! | TATCATCATGCACCTTTTGC+AGG | + | chr1_3:49633632-49633651 | Msa0122790:intron | 40.0% |
| CTGCGACTAAAATATTAGCC+AGG | + | chr1_3:49633655-49633674 | Msa0122790:CDS | 40.0% | |
| ! | GGTCCATCTGATGCTAATTT+TGG | + | chr1_3:49633777-49633796 | Msa0122790:intron | 40.0% |
| ! | TTTGGTACTTTGTTATCGGG+GGG | + | chr1_3:49633795-49633814 | Msa0122790:intron | 40.0% |
| GGCAATGGAAGCTATGAATA+AGG | + | chr1_3:49633909-49633928 | Msa0122790:CDS | 40.0% | |
| GCAGCAATGTATCATGTATC+GGG | - | chr1_3:49633979-49633998 | None:intergenic | 40.0% | |
| ACATGATACATTGCTGCAGT+TGG | + | chr1_3:49633982-49634001 | Msa0122790:intron | 40.0% | |
| !!! | TGAAGCTTTTGTTTTGCGGA+AGG | + | chr1_3:49634079-49634098 | Msa0122790:intron | 40.0% |
| TTGCGGAAGGTCTTACAAAT+TGG | + | chr1_3:49634092-49634111 | Msa0122790:intron | 40.0% | |
| ! | TCCAAGCTTGTTCAAGGTTA+AGG | + | chr1_3:49634150-49634169 | Msa0122790:intron | 40.0% |
| TCCTTAACCTTGAACAAGCT+TGG | - | chr1_3:49634154-49634173 | None:intergenic | 40.0% | |
| ACTTTGCAATCTGAAAAGGC+CGG | - | chr1_3:49634210-49634229 | None:intergenic | 40.0% | |
| CATCCTTCACGATCATTCAT+TGG | - | chr1_3:49634235-49634254 | None:intergenic | 40.0% | |
| !! | CCATTTGTGCTGATTGTTTC+TGG | - | chr1_3:49634483-49634502 | None:intergenic | 40.0% |
| CCAGAAACAATCAGCACAAA+TGG | + | chr1_3:49634480-49634499 | Msa0122790:CDS | 40.0% | |
| GTTCGTGTTTCCACATCTAA+TGG | + | chr1_3:49634551-49634570 | Msa0122790:intron | 40.0% | |
| ACAGATTCTGCCATTAGATG+TGG | - | chr1_3:49634564-49634583 | None:intergenic | 40.0% | |
| GACAGAAGATCTGACAAATC+AGG | + | chr1_3:49634656-49634675 | Msa0122790:CDS | 40.0% | |
| TGAGTCACCTAACTGGATTA+TGG | - | chr1_3:49634939-49634958 | None:intergenic | 40.0% | |
| CGCAGTCCAAAAAAACAAGT+GGG | - | chr1_3:49635462-49635481 | None:intergenic | 40.0% | |
| ACGCAGTCCAAAAAAACAAG+TGG | - | chr1_3:49635463-49635482 | None:intergenic | 40.0% | |
| TTGCACATATGATTCTACGG+AGG | + | chr1_3:49635866-49635885 | Msa0122790:intron | 40.0% | |
| !!! | TCAGAACTCCCACGTTTTTT+TGG | + | chr1_3:49636622-49636641 | Msa0122790:three_prime_UTR | 40.0% |
| !!! | CAGAACTCCCACGTTTTTTT+GGG | + | chr1_3:49636623-49636642 | Msa0122790:three_prime_UTR | 40.0% |
| !!! | AGGAAGGAACCTTTTGGCTT+AGG | - | chr1_3:49632816-49632835 | None:intergenic | 45.0% |
| CGAAATTGAATGACGGTGGA+AGG | - | chr1_3:49632893-49632912 | None:intergenic | 45.0% | |
| ACCTCTGCATGGATAGAGAA+GGG | - | chr1_3:49632955-49632974 | None:intergenic | 45.0% | |
| AACCTCTGCATGGATAGAGA+AGG | - | chr1_3:49632956-49632975 | None:intergenic | 45.0% | |
| AACTGCTAAGACGGGAAATG+AGG | + | chr1_3:49633289-49633308 | Msa0122790:intron | 45.0% | |
| ! | TTTTAGTCGCAGCCTGCAAA+AGG | - | chr1_3:49633647-49633666 | None:intergenic | 45.0% |
| TATTAGCCAGGCAGTTGGTT+AGG | + | chr1_3:49633667-49633686 | Msa0122790:CDS | 45.0% | |
| TTTGAGCTCGACTACCTTGA+AGG | - | chr1_3:49633713-49633732 | None:intergenic | 45.0% | |
| ACACAGGTACATTGCTTGAG+TGG | + | chr1_3:49633753-49633772 | Msa0122790:intron | 45.0% | |
| !! | GCACAGTCTTCTATTTCTGC+CGG | + | chr1_3:49633868-49633887 | Msa0122790:CDS | 45.0% |
| !! | TCTATTTCTGCCGGCATGAA+AGG | + | chr1_3:49633877-49633896 | Msa0122790:CDS | 45.0% |
| CTTACTAGCACCTTTCATGC+CGG | - | chr1_3:49633890-49633909 | None:intergenic | 45.0% | |
| !! | GAAAGGTGCTAGTAAGGCAA+TGG | + | chr1_3:49633894-49633913 | Msa0122790:CDS | 45.0% |
| ATGTATCATGTATCGGGCCA+TGG | - | chr1_3:49633973-49633992 | None:intergenic | 45.0% | |
| ! | ATGGTGTCCAAGCTTGTTCA+AGG | + | chr1_3:49634144-49634163 | Msa0122790:intron | 45.0% |
| AGATGCCATCGATGATGTCT+TGG | + | chr1_3:49634611-49634630 | Msa0122790:CDS | 45.0% | |
| TCTCAGCTATACATTGGGCA+TGG | + | chr1_3:49634773-49634792 | Msa0122790:intron | 45.0% | |
| ATCGGAACACAGGATGTTAC+AGG | - | chr1_3:49634844-49634863 | None:intergenic | 45.0% | |
| ! | GTTGCATTTTATGCACCCCA+GGG | + | chr1_3:49635060-49635079 | Msa0122790:intron | 45.0% |
| TTCTACGTGTGTTATCCCTG+GGG | - | chr1_3:49635078-49635097 | None:intergenic | 45.0% | |
| GTTCTACGTGTGTTATCCCT+GGG | - | chr1_3:49635079-49635098 | None:intergenic | 45.0% | |
| TGTTCTACGTGTGTTATCCC+TGG | - | chr1_3:49635080-49635099 | None:intergenic | 45.0% | |
| !!! | GTGGGAGTATTTTAGTCAGC+TGG | + | chr1_3:49635423-49635442 | Msa0122790:intron | 45.0% |
| TGGCAGGTACTCGATGAAAT+CGG | + | chr1_3:49635944-49635963 | Msa0122790:intron | 45.0% | |
| !! | ATGTTGCTTCACAGGTTGGT+TGG | + | chr1_3:49635972-49635991 | Msa0122790:intron | 45.0% |
| CAGTTATCAGCAGCTCCAAA+AGG | + | chr1_3:49636093-49636112 | Msa0122790:intron | 45.0% | |
| CATCAATTTCGGAGCTGCAA+TGG | - | chr1_3:49636509-49636528 | None:intergenic | 45.0% | |
| !! | TGATGACATCGAGAAGCGTT+TGG | + | chr1_3:49636524-49636543 | Msa0122790:CDS | 45.0% |
| !!! | AAAAATTTAAAGTATTTTTA+AGG | - | chr1_3:49635765-49635784 | None:intergenic | 5.0% |
| !!! | TTAAAAATACTTTAAATTTT+TGG | + | chr1_3:49635764-49635783 | Msa0122790:intron | 5.0% |
| TCTGCATGGATAGAGAAGGG+GGG | - | chr1_3:49632952-49632971 | None:intergenic | 50.0% | |
| CTCTGCATGGATAGAGAAGG+GGG | - | chr1_3:49632953-49632972 | None:intergenic | 50.0% | |
| CCTCTGCATGGATAGAGAAG+GGG | - | chr1_3:49632954-49632973 | None:intergenic | 50.0% | |
| ! | TCTCTCTGAGAACCTCTGCA+TGG | - | chr1_3:49632966-49632985 | None:intergenic | 50.0% |
| GAAATGGCCAATGCCACTAG+AGG | + | chr1_3:49632994-49633013 | Msa0122790:CDS | 50.0% | |
| GGTAGTCGAGCTCAAATGAG+AGG | + | chr1_3:49633717-49633736 | Msa0122790:CDS | 50.0% | |
| AGGCATAGCAACTCACACAC+AGG | + | chr1_3:49633737-49633756 | Msa0122790:CDS | 50.0% | |
| CAGGTACATTGCTTGAGTGG+TGG | + | chr1_3:49633756-49633775 | Msa0122790:intron | 50.0% | |
| ! | GTACTTTGTTATCGGGGGGT+GGG | + | chr1_3:49633799-49633818 | Msa0122790:intron | 50.0% |
| !! | CGGCATGAAAGGTGCTAGTA+AGG | + | chr1_3:49633888-49633907 | Msa0122790:CDS | 50.0% |
| ATCCTGTGTTCCGATCCCTT+AGG | + | chr1_3:49634849-49634868 | Msa0122790:intron | 50.0% | |
| TTCCTAAGGGATCGGAACAC+AGG | - | chr1_3:49634854-49634873 | None:intergenic | 50.0% | |
| TCTCAGCTGAGTCACCTAAC+TGG | - | chr1_3:49634946-49634965 | None:intergenic | 50.0% | |
| ! | GGTTGCATTTTATGCACCCC+AGG | + | chr1_3:49635059-49635078 | Msa0122790:intron | 50.0% |
| ! | GTGGATGTTGCTTCACAGGT+TGG | + | chr1_3:49635968-49635987 | Msa0122790:intron | 50.0% |
| !! | TGACATCGAGAAGCGTTTGG+CGG | + | chr1_3:49636527-49636546 | Msa0122790:CDS | 50.0% |
| CCCCTTCTCTATCCATGCAG+AGG | + | chr1_3:49632951-49632970 | Msa0122790:intron | 55.0% | |
| CCTAAGCCTAACCAACTGCC+TGG | - | chr1_3:49633676-49633695 | None:intergenic | 55.0% | |
| CCAGGCAGTTGGTTAGGCTT+AGG | + | chr1_3:49633673-49633692 | Msa0122790:CDS | 55.0% | |
| ! | GGTACTTTGTTATCGGGGGG+TGG | + | chr1_3:49633798-49633817 | Msa0122790:intron | 55.0% |
| GGTACTCGATGAAATCGGCG+TGG | + | chr1_3:49635949-49635968 | Msa0122790:intron | 55.0% | |
| TGGAGCTGCTGATAACTGCC+AGG | - | chr1_3:49636091-49636110 | None:intergenic | 55.0% | |
| GGGGGACTGTTGGAATGGAT+GGG | - | chr1_3:49636268-49636287 | None:intergenic | 55.0% | |
| TAGAGGGGGGACTGTTGGAA+TGG | - | chr1_3:49636273-49636292 | None:intergenic | 55.0% | |
| AGACATAGAGGGGGGACTGT+TGG | - | chr1_3:49636278-49636297 | None:intergenic | 55.0% | |
| ! | CGGCGTGGATGTTGCTTCAC+AGG | + | chr1_3:49635964-49635983 | Msa0122790:CDS | 60.0% |
| GGGGGGACTGTTGGAATGGA+TGG | - | chr1_3:49636269-49636288 | None:intergenic | 60.0% | |
| CGCGCGCACACACACACACT+TGG | + | chr1_3:49635612-49635631 | Msa0122790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49632702 | 49636708 | 49632702 | ID=Msa0122790;Name=Msa0122790 |
| chr1_3 | mRNA | 49632702 | 49636708 | 49632702 | ID=Msa0122790-mRNA-1;Parent=Msa0122790;Name=Msa0122790-mRNA-1;_AED=0.12;_eAED=0.12;_QI=78|0.88|1|1|1|1|10|142|199 |
| chr1_3 | exon | 49632702 | 49632825 | 49632702 | ID=Msa0122790-mRNA-1:exon:15059;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49632971 | 49633015 | 49632971 | ID=Msa0122790-mRNA-1:exon:15060;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49633138 | 49633172 | 49633138 | ID=Msa0122790-mRNA-1:exon:15061;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49633654 | 49633758 | 49633654 | ID=Msa0122790-mRNA-1:exon:15062;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49633859 | 49633930 | 49633859 | ID=Msa0122790-mRNA-1:exon:15063;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49634439 | 49634510 | 49634439 | ID=Msa0122790-mRNA-1:exon:15064;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49634597 | 49634677 | 49634597 | ID=Msa0122790-mRNA-1:exon:15065;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49635950 | 49635985 | 49635950 | ID=Msa0122790-mRNA-1:exon:15066;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49636096 | 49636151 | 49636096 | ID=Msa0122790-mRNA-1:exon:15067;Parent=Msa0122790-mRNA-1 |
| chr1_3 | exon | 49636515 | 49636708 | 49636515 | ID=Msa0122790-mRNA-1:exon:15068;Parent=Msa0122790-mRNA-1 |
| chr1_3 | five_prime_UTR | 49632702 | 49632779 | 49632702 | ID=Msa0122790-mRNA-1:five_prime_utr;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49632780 | 49632825 | 49632780 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49632971 | 49633015 | 49632971 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49633138 | 49633172 | 49633138 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49633654 | 49633758 | 49633654 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49633859 | 49633930 | 49633859 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49634439 | 49634510 | 49634439 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49634597 | 49634677 | 49634597 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49635950 | 49635985 | 49635950 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49636096 | 49636151 | 49636096 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | CDS | 49636515 | 49636566 | 49636515 | ID=Msa0122790-mRNA-1:cds;Parent=Msa0122790-mRNA-1 |
| chr1_3 | three_prime_UTR | 49636567 | 49636708 | 49636567 | ID=Msa0122790-mRNA-1:three_prime_utr;Parent=Msa0122790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
