AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092400 MtrunA17_Chr3g0115271 97.311 595 14 1 14 608 1 593 0.0 1197
Msa0092400 MtrunA17_Chr5g0424931 44.846 553 250 14 32 573 19 527 5.26e-146 432
Msa0092400 MtrunA17_Chr2g0326761 43.494 561 281 14 28 569 7 550 2.55e-129 395
Msa0092400 MtrunA17_Chr5g0417281 40.598 569 261 14 29 577 8 519 7.12e-128 386
Msa0092400 MtrunA17_Chr7g0264171 42.857 525 249 16 28 516 27 536 1.84e-124 380
Msa0092400 MtrunA17_Chr4g0028971 47.991 448 215 10 29 463 9 451 2.94e-124 382
Msa0092400 MtrunA17_Chr1g0181211 41.426 589 288 18 29 588 24 584 9.18e-122 375
Msa0092400 MtrunA17_Chr1g0199681 43.340 473 200 13 29 463 91 533 2.62e-118 367
Msa0092400 MtrunA17_Chr1g0178011 37.085 542 221 12 20 554 3 431 3.89e-107 330
Msa0092400 MtrunA17_Chr5g0436761 39.696 461 220 9 23 475 3 413 1.05e-99 311
Msa0092400 MtrunA17_Chr2g0277461 35.856 555 240 15 24 571 5 450 1.55e-98 308
Msa0092400 MtrunA17_Chr2g0289221 44.475 362 143 8 22 375 10 321 1.53e-91 286
Msa0092400 MtrunA17_Chr5g0417211 44.011 359 150 8 22 375 2 314 1.06e-89 283
Msa0092400 MtrunA17_Chr7g0264161 43.658 339 147 7 42 375 2 301 2.45e-85 268
Msa0092400 MtrunA17_Chr5g0424741 33.099 568 249 19 29 523 9 518 6.70e-75 248
Msa0092400 MtrunA17_Chr2g0277531 39.665 358 149 14 29 375 17 318 5.84e-72 234
Msa0092400 MtrunA17_Chr5g0424801 35.897 390 182 11 29 406 9 342 8.64e-70 230
Msa0092400 MtrunA17_Chr5g0425261 36.579 380 177 10 29 396 9 336 8.03e-69 228
Msa0092400 MtrunA17_Chr8g0376771 37.778 405 199 8 20 412 11 374 1.06e-68 239
Msa0092400 MtrunA17_Chr2g0276781 37.755 392 201 8 29 414 20 374 1.47e-68 235
Msa0092400 MtrunA17_Chr2g0282961 34.804 408 216 5 18 414 39 407 3.52e-68 233
Msa0092400 MtrunA17_Chr2g0285461 37.656 401 206 7 20 412 11 375 1.52e-67 236
Msa0092400 MtrunA17_Chr4g0009751 36.387 393 201 8 30 414 17 368 8.56e-66 226
Msa0092400 MtrunA17_Chr1g0156321 38.832 394 185 11 28 410 39 387 4.09e-65 229
Msa0092400 MtrunA17_Chr3g0109391 36.990 392 203 7 29 412 23 378 6.57e-65 228
Msa0092400 MtrunA17_Chr5g0433301 36.735 392 204 7 29 412 21 376 3.86e-64 226
Msa0092400 MtrunA17_Chr8g0385791 34.491 432 219 9 32 440 59 449 4.78e-64 225
Msa0092400 MtrunA17_Chr4g0046371 35.750 400 199 9 32 414 38 396 1.25e-62 219
Msa0092400 MtrunA17_Chr7g0239061 34.910 444 237 15 29 460 11 414 5.27e-62 217
Msa0092400 MtrunA17_Chr4g0070181 35.696 381 196 6 28 399 19 359 1.50e-60 218
Msa0092400 MtrunA17_Chr2g0326281 35.468 406 193 10 32 410 56 419 2.33e-59 212
Msa0092400 MtrunA17_Chr4g0029671 33.920 398 213 7 32 414 54 416 1.07e-57 207
Msa0092400 MtrunA17_Chr8g0346711 35.459 392 207 9 29 414 26 377 2.01e-57 204
Msa0092400 MtrunA17_Chr5g0425661 48.515 202 96 4 24 220 29 227 3.62e-54 184
Msa0092400 MtrunA17_Chr2g0301251 45.161 217 106 3 29 236 20 232 6.99e-54 198
Msa0092400 MtrunA17_Chr8g0389081 45.370 216 112 4 24 233 24 239 1.52e-50 188
Msa0092400 MtrunA17_Chr8g0389081 40.625 96 55 2 301 395 272 366 4.74e-11 66.2
Msa0092400 MtrunA17_Chr8g0356211 28.626 262 148 6 138 399 2 224 4.42e-30 120
Msa0092400 MtrunA17_Chr5g0425651 40.625 128 59 4 290 408 2 121 2.87e-24 98.2
Msa0092400 MtrunA17_Chr5g0424791 39.865 148 77 4 81 226 14 151 8.77e-22 92.0
Msa0092400 MtrunA17_Chr5g0419861 41.379 116 57 5 69 177 11 122 4.31e-14 69.7
Msa0092400 MtrunA17_Chr1g0178071 36.752 117 68 4 118 230 65 179 4.12e-12 67.8
Msa0092400 MtrunA17_Chr4g0072581 70.213 47 13 1 200 245 5 51 1.04e-11 60.8
Msa0092400 MtrunA17_Chr8g0345771 36.364 110 65 2 125 230 167 275 2.09e-11 66.6
Msa0092400 MtrunA17_Chr5g0422501 33.051 118 71 3 110 220 217 333 7.84e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092400 AT1G77850.2 47.950 561 269 11 25 575 12 559 4.08e-164 482
Msa0092400 AT1G77850.1 47.950 561 269 11 25 575 12 559 4.18e-164 481
Msa0092400 AT4G30080.1 42.376 564 284 14 29 574 16 556 1.17e-121 375
Msa0092400 AT2G28350.2 46.389 457 209 10 28 460 6 450 1.04e-119 370
Msa0092400 AT2G28350.1 46.389 457 209 10 28 460 6 450 1.99e-119 370
Msa0092400 AT5G37020.2 37.101 407 211 8 29 426 19 389 1.04e-69 240
Msa0092400 AT5G37020.1 37.101 407 211 8 29 426 19 389 2.86e-69 240
Msa0092400 AT1G30330.3 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa0092400 AT1G30330.2 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa0092400 AT1G30330.1 38.250 400 203 7 21 412 12 375 1.47e-68 240
Msa0092400 AT2G33860.1 33.983 462 244 8 32 473 54 474 1.70e-68 234
Msa0092400 AT1G59750.4 37.692 390 198 10 32 414 22 373 6.35e-66 228
Msa0092400 AT1G59750.2 37.692 390 198 10 32 414 22 373 7.75e-66 228
Msa0092400 AT1G59750.1 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa0092400 AT1G59750.3 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa0092400 AT2G46530.1 35.714 406 208 9 25 419 14 377 2.95e-63 219
Msa0092400 AT4G23980.2 36.702 376 187 10 29 395 9 342 5.28e-63 219
Msa0092400 AT4G23980.1 36.702 376 187 10 29 395 9 342 7.36e-63 219
Msa0092400 AT2G46530.3 35.309 405 211 8 25 419 35 398 9.25e-63 218
Msa0092400 AT5G60450.2 34.670 424 222 9 25 432 34 418 3.23e-62 220
Msa0092400 AT5G60450.1 35.012 417 216 9 32 432 65 442 2.55e-61 218
Msa0092400 AT1G19850.2 37.468 395 188 12 29 410 40 388 3.09e-61 219
Msa0092400 AT1G19850.1 37.468 395 188 12 29 410 51 399 3.61e-61 219
Msa0092400 AT3G61830.1 34.726 383 206 6 29 406 22 365 1.62e-60 212
Msa0092400 AT5G62000.4 33.487 433 222 10 32 440 61 451 8.24e-60 214
Msa0092400 AT5G62000.2 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0092400 AT5G62000.5 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0092400 AT5G62000.3 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0092400 AT5G62000.1 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0092400 AT1G35520.1 31.481 486 257 15 24 478 19 459 1.10e-56 201
Msa0092400 AT1G34410.1 32.083 480 246 18 32 478 27 459 1.27e-55 199
Msa0092400 AT1G34310.1 34.761 397 204 11 32 419 27 377 3.56e-55 197
Msa0092400 AT1G35240.1 34.596 396 202 12 32 417 27 375 9.03e-55 196
Msa0092400 AT1G19220.1 45.161 217 106 3 29 236 20 232 4.89e-54 199
Msa0092400 AT5G20730.1 45.161 217 106 3 29 236 21 233 3.71e-53 197
Msa0092400 AT5G20730.2 45.161 217 106 3 29 236 21 233 4.06e-53 196
Msa0092400 AT5G20730.3 45.161 217 106 3 29 236 21 233 4.56e-53 196
Msa0092400 AT1G34390.1 33.753 397 206 12 32 419 27 375 2.35e-52 189
Msa0092400 AT2G33860.2 35.028 354 182 6 130 473 2 317 9.59e-52 184
Msa0092400 AT1G35540.1 33.165 395 213 11 32 419 27 377 2.91e-51 187
Msa0092400 AT5G37020.3 38.000 300 147 6 130 426 31 294 6.27e-51 187
Msa0092400 AT3G61830.2 34.545 330 177 5 77 406 24 314 1.13e-48 178
Msa0092400 AT1G34170.1 30.548 383 206 11 27 397 20 354 6.06e-45 167
Msa0092400 AT2G46530.2 35.786 299 144 8 127 419 34 290 1.61e-42 160
Msa0092400 ATMG00940.1 50.000 154 71 3 217 370 1 148 3.94e-39 141
Msa0092400 AT1G34170.2 28.982 383 186 11 27 397 20 328 8.69e-39 149
Msa0092400 AT1G34170.3 28.982 383 186 11 27 397 20 328 3.51e-38 149
Msa0092400 AT1G43950.1 38.725 204 111 7 32 229 27 222 1.13e-34 131
Msa0092400 AT3G61970.1 34.454 119 73 3 117 230 9 127 1.55e-12 69.3
Msa0092400 AT2G36080.3 37.273 110 65 2 125 230 33 142 2.71e-12 67.4
Msa0092400 AT2G36080.4 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa0092400 AT2G36080.2 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa0092400 AT2G36080.1 37.273 110 65 2 125 230 33 142 3.52e-12 67.4
Msa0092400 AT2G46870.1 33.071 127 79 2 124 245 29 154 2.04e-11 65.9
Msa0092400 AT4G01500.1 38.542 96 50 2 126 218 32 121 2.59e-11 65.9
Msa0092400 AT1G01030.1 33.613 119 73 2 116 229 42 159 2.68e-11 65.9
Msa0092400 AT1G01030.2 33.613 119 73 2 116 229 42 159 2.99e-11 65.9
Msa0092400 AT3G25730.1 34.314 102 63 2 130 227 183 284 8.78e-11 64.3

Find 210 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTTCAGAACTTTAT+TGG 0.164550 1_2:-74816573 Msa0092400:intron
CCTCAACTGTTGAGGCTATT+TGG 0.202921 1_2:+74817174 None:intergenic
CCTGTAACGTTTCAGCTATT+TGG 0.208521 1_2:-74817356 Msa0092400:CDS
GAAACTAAGTATGTAATATT+TGG 0.249464 1_2:-74816293 Msa0092400:three_prime_UTR
TCATTGTTCAGAACTTTATT+GGG 0.286084 1_2:-74816572 Msa0092400:intron
CTGTTCCTGATCGTGGGGCT+TGG 0.289614 1_2:-74818873 Msa0092400:CDS
GCGATAGCTCGCCAGAGTTT+GGG 0.291734 1_2:+74819855 None:intergenic
TCTCAATTTGACCCCGCTAT+TGG 0.292420 1_2:-74816204 Msa0092400:three_prime_UTR
AAAAGGACTAGAGGGGTATC+TGG 0.298766 1_2:-74817734 Msa0092400:CDS
GGCGATAGCTCGCCAGAGTT+TGG 0.304479 1_2:+74819854 None:intergenic
AAATCCCCTCCGTCAATTCT+AGG 0.308448 1_2:-74819818 Msa0092400:CDS
TCCTCCGTTGGATTATAGTA+TGG 0.314074 1_2:-74819478 Msa0092400:CDS
TCCGGTGGCGGTTGCGGAGG+CGG 0.344489 1_2:-74819094 Msa0092400:CDS
CAGAGTAGTTTGCCTTCCTT+TGG 0.347823 1_2:-74817425 Msa0092400:CDS
TTTGTTTGTCTTATTGAAAC+CGG 0.362279 1_2:-74816323 Msa0092400:three_prime_UTR
TGATAACTTCCGTCTTTGTA+TGG 0.363524 1_2:-74817546 Msa0092400:CDS
TTGGAAGTTTGCAACACTTC+AGG 0.367022 1_2:+74817827 None:intergenic
TCCAGGACTACTTGGTTTCA+AGG 0.368052 1_2:-74818913 Msa0092400:CDS
GGCGGCGGAAATGGCAGCAC+AGG 0.371956 1_2:-74819076 Msa0092400:CDS
GGTTGCGGAGGCGGCGGAAA+TGG 0.372996 1_2:-74819085 Msa0092400:CDS
TGGAGACTGATGATTCTTCC+AGG 0.375310 1_2:-74818930 Msa0092400:CDS
CCAAATAGCTGAAACGTTAC+AGG 0.375667 1_2:+74817356 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.375982 1_2:-74817610 Msa0092400:CDS
ATACTTAGTTTCATTGTTCC+CGG 0.381218 1_2:+74816304 None:intergenic
TTGGAGACGGTGGTAGTACT+TGG 0.385584 1_2:+74819898 None:intergenic
TTTGGCAGCAACACAGTGCC+GGG 0.386977 1_2:-74817515 Msa0092400:CDS
CTTTGTATGGGTAACTCCTT+TGG 0.387691 1_2:-74817533 Msa0092400:CDS
TTGTTGATTACTGATGTTCA+TGG 0.389456 1_2:-74819438 Msa0092400:CDS
GTTTCAAGGTGTAGTGTCTC+AGG 0.398107 1_2:-74818899 Msa0092400:CDS
TTCTATATAAATCCAATAGC+GGG 0.403966 1_2:+74816192 None:intergenic
CTGGCTCCCTGCATGCCAGC+AGG 0.411242 1_2:+74817611 None:intergenic
AGGTTTCTGTTCCTGATCGT+GGG 0.413423 1_2:-74818879 Msa0092400:CDS
GTGAACCCTGTGATAGAAAA+GGG 0.417152 1_2:+74817686 None:intergenic
CGCCGGCATTTGTTGACCAC+CGG 0.418386 1_2:-74819375 Msa0092400:CDS
AAATTGCTCGACAGGCTTGA+TGG 0.418640 1_2:-74817203 Msa0092400:CDS
AGCTGAAACGTTACAGGCCC+GGG 0.423670 1_2:+74817362 None:intergenic
ATGATTCTTCCAGGACTACT+TGG 0.424084 1_2:-74818921 Msa0092400:CDS
AGAAGAGGTGAGAGATTGTT+CGG 0.425048 1_2:+74819750 None:intergenic
GTTGTCTCCGGTGGCGGTTG+CGG 0.431234 1_2:-74819100 Msa0092400:CDS
CTGCCAAGGGCTGACCCACT+TGG 0.431622 1_2:+74817808 None:intergenic
CAAGTGGGTCAGCCCTTGGC+AGG 0.434174 1_2:-74817807 Msa0092400:CDS
CAGGTTTCTGTTCCTGATCG+TGG 0.441155 1_2:-74818880 Msa0092400:CDS
GGCAAACTACTCTGGCTCTC+TGG 0.444672 1_2:+74817434 None:intergenic
AGTACTTGGCGGTTCATGAT+TGG 0.452130 1_2:+74819912 None:intergenic
AAATGGCAGCACAGGGGATG+GGG 0.452139 1_2:-74819068 Msa0092400:CDS
AACGCTAAGAAGCTTGTTGC+TGG 0.453003 1_2:-74819336 Msa0092400:CDS
CTAACCAACCATTGTACTCT+AGG 0.453897 1_2:+74816229 None:intergenic
AGTGAACCCTGTGATAGAAA+AGG 0.454541 1_2:+74817685 None:intergenic
GCCGCCTCCGCAACCGCCAC+CGG 0.456465 1_2:+74819093 None:intergenic
GGGGAAGTTGTCTCCGGTGG+CGG 0.456900 1_2:-74819106 Msa0092400:CDS
GGTGGCGGTTGCGGAGGCGG+CGG 0.459780 1_2:-74819091 Msa0092400:CDS
GAAATGGCAGCACAGGGGAT+GGG 0.460169 1_2:-74819069 Msa0092400:CDS
GGAAATGGCAGCACAGGGGA+TGG 0.461216 1_2:-74819070 Msa0092400:CDS
CAAAGGAAGGCAAACTACTC+TGG 0.464413 1_2:+74817426 None:intergenic
TCCTGGAATGAGAATCAAAA+TGG 0.464829 1_2:-74818956 Msa0092400:CDS
GGGGATTTGCACGGCAGCGC+CGG 0.466220 1_2:+74819833 None:intergenic
GGTGGATGAAGAAGAGAAGC+TGG 0.468766 1_2:-74819160 Msa0092400:CDS
AAAGGACTAGAGGGGTATCT+GGG 0.471476 1_2:-74817733 Msa0092400:CDS
CGATCTGTGGAGTGAGAAGT+AGG 0.471915 1_2:-74819182 Msa0092400:CDS
CCTCTCCAAGCCCCACGATC+AGG 0.472164 1_2:+74818868 None:intergenic
CACAGGAGATGACAGCAGTA+AGG 0.472700 1_2:-74817279 Msa0092400:CDS
ACCATTTGAACCACTTTCAA+CGG 0.473718 1_2:+74817310 None:intergenic
ATCGGAGCAAACACCGCCAC+CGG 0.479208 1_2:+74819224 None:intergenic
CCATTTGAACCACTTTCAAC+GGG 0.480213 1_2:+74817311 None:intergenic
CTGATGTTCATGGTTTGACT+TGG 0.481505 1_2:-74819428 Msa0092400:CDS
CTTTGGCAGCAACACAGTGC+CGG 0.482301 1_2:-74817516 Msa0092400:CDS
CCACCGGCGCTACTCCGATT+CGG 0.482322 1_2:+74819240 None:intergenic
CCCGTTGAAAGTGGTTCAAA+TGG 0.482554 1_2:-74817311 Msa0092400:CDS
CTTACTCAAAATTGCTCGAC+AGG 0.482573 1_2:-74817211 Msa0092400:CDS
ATTGTTTCTGATAGATTACA+TGG 0.486179 1_2:-74817856 Msa0092400:intron
AATCCCCTCCGTCAATTCTA+GGG 0.486899 1_2:-74819817 Msa0092400:CDS
CGGGAAGGGGAAGTTGTCTC+CGG 0.490275 1_2:-74819112 Msa0092400:CDS
ACCTTGAAACCAAGTAGTCC+TGG 0.491621 1_2:+74818912 None:intergenic
GAGGAAATGAACGGCGGAGA+CGG 0.491674 1_2:+74819701 None:intergenic
GAAGTTATCACCTGGAAAGT+TGG 0.498091 1_2:+74817559 None:intergenic
TCTCATGGCATGAAGTTCAA+TGG 0.498753 1_2:-74816530 Msa0092400:three_prime_UTR
AGAGAAGCTGGTGGATGAGA+AGG 0.506899 1_2:-74819148 Msa0092400:CDS
CTTCCAAGTGGGTCAGCCCT+TGG 0.507741 1_2:-74817811 Msa0092400:CDS
GGGTTCACTAATTCAACAAT+GGG 0.507819 1_2:-74817671 Msa0092400:CDS
ATGCACATAAGTAGCTGTAC+AGG 0.510612 1_2:-74817120 Msa0092400:intron
CTTGGTCCATGTGACCTTGA+GGG 0.511485 1_2:+74819784 None:intergenic
AATCGGAGTAGCGCCGGTGG+CGG 0.511889 1_2:-74819237 Msa0092400:CDS
ACAGGAGATGACAGCAGTAA+GGG 0.514015 1_2:-74817278 Msa0092400:CDS
ATGAGTGTTACTTGGTGTCC+TGG 0.519012 1_2:-74818973 Msa0092400:CDS
GAGACGGTGGTAGTACTTGG+CGG 0.520685 1_2:+74819901 None:intergenic
CTGTTCGATTAGTTCCGAAT+CGG 0.520734 1_2:-74819254 Msa0092400:CDS
TAGCTGAAACGTTACAGGCC+CGG 0.521167 1_2:+74817361 None:intergenic
TAGGGACGAGAGAGAAGAAG+AGG 0.523309 1_2:+74819735 None:intergenic
CTGTTGAGGCTATTTGGCAC+TGG 0.523716 1_2:+74817180 None:intergenic
GAAAGAAGTTCCACCTGCCA+AGG 0.525099 1_2:+74817794 None:intergenic
GTGGGTCAGCCCTTGGCAGG+TGG 0.528173 1_2:-74817804 Msa0092400:CDS
GCGGCGGAAATGGCAGCACA+GGG 0.528509 1_2:-74819075 Msa0092400:CDS
GTGGTGTATTATCCGAGAGC+GGG 0.529625 1_2:-74819039 Msa0092400:CDS
TCTGATGCGAACAACGGTGG+TGG 0.529876 1_2:-74819537 Msa0092400:CDS
GTCTCCGGTGGCGGTTGCGG+AGG 0.531959 1_2:-74819097 Msa0092400:CDS
CTACTTCCCTCAAGGTCACA+TGG 0.532844 1_2:-74819790 Msa0092400:CDS
AACCGGTGGTCAACAAATGC+CGG 0.533689 1_2:+74819373 None:intergenic
AACTGCAACTCAATGAAACC+CGG 0.535247 1_2:-74817380 Msa0092400:CDS
ACAGAACAGCCCGTTGAAAG+TGG 0.538177 1_2:-74817320 Msa0092400:CDS
AACGGAAAATAGATCATGCC+TGG 0.538278 1_2:+74817592 None:intergenic
GAGACGGAGCAGAGAATGTA+GGG 0.539234 1_2:+74819717 None:intergenic
GATAACTTCCGTCTTTGTAT+GGG 0.539535 1_2:-74817545 Msa0092400:CDS
GTAGTAAACCCTAGAATTGA+CGG 0.541390 1_2:+74819809 None:intergenic
GAAAGCGGAGGTTGTGGATG+CGG 0.543290 1_2:-74818998 Msa0092400:CDS
CCCCATTGAAAAGGACTAGA+GGG 0.543634 1_2:-74817742 Msa0092400:CDS
TGTTGACCACCGGTTGGAGT+AGG 0.544509 1_2:-74819365 Msa0092400:CDS
ATAAGGACACTCACTTCAGA+TGG 0.545289 1_2:+74816479 None:intergenic
TGATGTTCATGGTTTGACTT+GGG 0.545373 1_2:-74819427 Msa0092400:CDS
AAACTCTGGCGAGCTATCGC+CGG 0.546085 1_2:-74819852 Msa0092400:CDS
AAATCCGACCACCCCGCTCT+CGG 0.548356 1_2:+74819027 None:intergenic
TTATCCGAGAGCGGGGTGGT+CGG 0.550098 1_2:-74819031 Msa0092400:CDS
ATGCGGCGATGAGTGTTACT+TGG 0.550397 1_2:-74818981 Msa0092400:CDS
CCACACTCAACCCCAAACTC+TGG 0.551845 1_2:-74819866 Msa0092400:CDS
TGTTCGGAAGTGAAGTAGCT+TGG 0.552094 1_2:+74819766 None:intergenic
GGAGACGGAGCAGAGAATGT+AGG 0.553295 1_2:+74819716 None:intergenic
GTTCACAAACCTACTCCAAC+CGG 0.553748 1_2:+74819356 None:intergenic
AGGGTTTACTACTTCCCTCA+AGG 0.555346 1_2:-74819798 Msa0092400:CDS
CGGCACTGTGTTGCTGCCAA+AGG 0.556216 1_2:+74817517 None:intergenic
GGCATTTGTTGACCACCGGT+TGG 0.557182 1_2:-74819371 Msa0092400:CDS
TTGTTTGTCTTATTGAAACC+GGG 0.560405 1_2:-74816322 Msa0092400:three_prime_UTR
CCGTCGTCAGCTTCAATCAC+CGG 0.562074 1_2:+74819597 None:intergenic
TGTGTTGAAAGCGGAGGTTG+TGG 0.562873 1_2:-74819004 Msa0092400:CDS
ATCAACAAATTCTGCAACGG+AGG 0.565435 1_2:+74819453 None:intergenic
CAAAGACGGAAGTTATCACC+TGG 0.565893 1_2:+74817551 None:intergenic
CCTGATCGTGGGGCTTGGAG+AGG 0.567198 1_2:-74818868 Msa0092400:CDS
AATGCCGGCGCGGCGTTCCA+CGG 0.569609 1_2:+74819388 None:intergenic
AGGCATTAACAACCCTCTTG+AGG 0.570796 1_2:-74817240 Msa0092400:CDS
TTTACCGTGGAACGCCGCGC+CGG 0.571717 1_2:-74819392 Msa0092400:CDS
AGATTGTGTCTTCCGATCTG+TGG 0.572758 1_2:-74819195 Msa0092400:CDS
ATTTCCTAGAGTACAATGGT+TGG 0.573247 1_2:-74816233 Msa0092400:three_prime_UTR
ACTAGAGGTGCAATGTTCAT+CGG 0.573435 1_2:-74819288 Msa0092400:CDS
GGGCTTGGAGAGGTTCACCT+TGG 0.573691 1_2:-74818858 Msa0092400:CDS
ACAAAATCTGTGCCAAAGGA+AGG 0.573965 1_2:+74817413 None:intergenic
AGGTACTTCTCCACGCAGAC+AGG 0.574972 1_2:-74816379 Msa0092400:three_prime_UTR
GGAAAGGGCGTATGAAGGGA+AGG 0.577013 1_2:+74817764 None:intergenic
ACAGGGGATGGGGTTTGAAG+TGG 0.577463 1_2:-74819058 Msa0092400:CDS
CCACCGTTGTTCGCATCAGA+AGG 0.582707 1_2:+74819540 None:intergenic
ATAAGAAGTAACGGAATCGA+AGG 0.582751 1_2:+74819966 None:intergenic
GTTCCGAATCGGAGTAGCGC+CGG 0.582911 1_2:-74819243 Msa0092400:CDS
CCAGAGTTTGGGGTTGAGTG+TGG 0.583941 1_2:+74819866 None:intergenic
TCAAATGGTACTGTTAGCAC+AGG 0.585129 1_2:-74817296 Msa0092400:CDS
AACGTTGGCAGTTCTCACTC+TGG 0.586514 1_2:-74817467 Msa0092400:CDS
GCTTGGTCCATGTGACCTTG+AGG 0.587306 1_2:+74819783 None:intergenic
TTGAAGCTGACGACGGTGAG+AGG 0.587325 1_2:-74819590 Msa0092400:CDS
CGATAGCTCGCCAGAGTTTG+GGG 0.589326 1_2:+74819856 None:intergenic
GTATCTGGGGTGTTAACTGA+TGG 0.592887 1_2:-74817719 Msa0092400:CDS
GCTTCAATCACCGGAATCCG+TGG 0.594157 1_2:+74819606 None:intergenic
TTTCTATATAAATCCAATAG+CGG 0.598851 1_2:+74816191 None:intergenic
CCGAACAAAATCTGTGCCAA+AGG 0.598966 1_2:+74817409 None:intergenic
CCAAATAGCCTCAACAGTTG+AGG 0.599347 1_2:-74817174 Msa0092400:CDS
AAGCTTAGCGAAAACCTCAT+CGG 0.601270 1_2:+74819665 None:intergenic
CCGAATCGGAGTAGCGCCGG+TGG 0.601878 1_2:-74819240 Msa0092400:CDS
AATGAGAATCAAAATGGCTG+TGG 0.607672 1_2:-74818950 Msa0092400:CDS
GGTTTCTGTTCCTGATCGTG+GGG 0.610340 1_2:-74818878 Msa0092400:CDS
GGTTGAATGAAAATGAGTGA+GGG 0.612055 1_2:+74819933 None:intergenic
AGGGTTCACTAATTCAACAA+TGG 0.612370 1_2:-74817672 Msa0092400:CDS
ATCGAATCAGCACAAAACCT+CGG 0.612548 1_2:+74819504 None:intergenic
GTAATCAACAAATTCTGCAA+CGG 0.612614 1_2:+74819450 None:intergenic
GAGTAAGTCGAATCCTCAAG+AGG 0.613064 1_2:+74817227 None:intergenic
CATACTGCAAGGTCAAAAGA+TGG 0.615276 1_2:+74816355 None:intergenic
AAGGACTAGAGGGGTATCTG+GGG 0.618552 1_2:-74817732 Msa0092400:CDS
CTACTTCTCACTCCACAGAT+CGG 0.620895 1_2:+74819183 None:intergenic
CATTGTTCAGAACTTTATTG+GGG 0.623018 1_2:-74816571 Msa0092400:intron
ACTGCAACTCAATGAAACCC+GGG 0.624047 1_2:-74817379 Msa0092400:CDS
TAATATTTCCTAGAGTACAA+TGG 0.626801 1_2:-74816237 Msa0092400:three_prime_UTR
CGGATCGGCGAGGAAATGAA+CGG 0.627023 1_2:+74819692 None:intergenic
TTGGCAGCAACACAGTGCCG+GGG 0.627502 1_2:-74817514 Msa0092400:CDS
TTAACAGTGAAATCATTCAA+CGG 0.636083 1_2:+74819633 None:intergenic
ATTGACGGAGGGGATTTGCA+CGG 0.638032 1_2:+74819824 None:intergenic
AAGGGCTGCAACGAAACTGA+AGG 0.639246 1_2:-74817260 Msa0092400:CDS
TAAGGACACTCACTTCAGAT+GGG 0.641287 1_2:+74816480 None:intergenic
GGATGAAGAAGAGAAGCTGG+TGG 0.642912 1_2:-74819157 Msa0092400:CDS
ATAGCACGCCTCAACTGTTG+AGG 0.645577 1_2:+74817166 None:intergenic
AGTAAGTCGAATCCTCAAGA+GGG 0.645578 1_2:+74817228 None:intergenic
TCTATATAAATCCAATAGCG+GGG 0.648813 1_2:+74816193 None:intergenic
AGGAGTTACCCATACAAAGA+CGG 0.649086 1_2:+74817537 None:intergenic
TGGTTGAATGAAAATGAGTG+AGG 0.649701 1_2:+74819932 None:intergenic
AAAGTACTGTAACTCAACAA+TGG 0.650302 1_2:+74817635 None:intergenic
GATCTGTGGAGTGAGAAGTA+GGG 0.650471 1_2:-74819181 Msa0092400:CDS
CCTTCTGATGCGAACAACGG+TGG 0.652015 1_2:-74819540 Msa0092400:CDS
TTGTTTCTGATAGATTACAT+GGG 0.652931 1_2:-74817855 Msa0092400:intron
AAAGAAGTTCCACCTGCCAA+GGG 0.653496 1_2:+74817795 None:intergenic
GAGTTTCGTCACATTTACCG+TGG 0.654474 1_2:-74819405 Msa0092400:CDS
GAAGGGGAAGTTGTCTCCGG+TGG 0.654859 1_2:-74819109 Msa0092400:CDS
AAAAGATGGTCCTGTCTGCG+TGG 0.657451 1_2:+74816369 None:intergenic
AAAGAAAACAGCATACTGCA+AGG 0.660360 1_2:+74816344 None:intergenic
TAAACCCTAGAATTGACGGA+GGG 0.662879 1_2:+74819813 None:intergenic
TGGTGTATTATCCGAGAGCG+GGG 0.665380 1_2:-74819038 Msa0092400:CDS
GGGGTGTTAACTGATGGAGA+TGG 0.666346 1_2:-74817713 Msa0092400:CDS
CGCCGATCCGAAAACCGATG+AGG 0.668414 1_2:-74819679 Msa0092400:CDS
GTGGTCAACAAATGCCGGCG+CGG 0.669526 1_2:+74819378 None:intergenic
ACTCCTTCTGATGCGAACAA+CGG 0.674390 1_2:-74819543 Msa0092400:CDS
AAGACACAATCTCGACACAT+CGG 0.674917 1_2:+74819206 None:intergenic
CACAAACCTACTCCAACCGG+TGG 0.675418 1_2:+74819359 None:intergenic
CGGCGGAAATGGCAGCACAG+GGG 0.678622 1_2:-74819074 Msa0092400:CDS
TGAACCCTGTGATAGAAAAG+GGG 0.678709 1_2:+74817687 None:intergenic
AGTGTTGCAAACTTCCAAGT+GGG 0.678749 1_2:-74817822 Msa0092400:CDS
CTGTGGAGTGAGAAGTAGGG+TGG 0.681702 1_2:-74819178 Msa0092400:CDS
CCCATTGAAAAGGACTAGAG+GGG 0.682404 1_2:-74817741 Msa0092400:CDS
TGTATTATCCGAGAGCGGGG+TGG 0.682628 1_2:-74819035 Msa0092400:CDS
AGTGGTGTATTATCCGAGAG+CGG 0.685012 1_2:-74819040 Msa0092400:CDS
AAGTGTTGCAAACTTCCAAG+TGG 0.685015 1_2:-74817823 Msa0092400:CDS
AAACCCTAGAATTGACGGAG+GGG 0.688106 1_2:+74819814 None:intergenic
GGATCCATACTATAATCCAA+CGG 0.690465 1_2:+74819474 None:intergenic
GAACTAATCGAACAGCACGA+CGG 0.693501 1_2:+74819262 None:intergenic
CATACATGAAGCATACGCCA+AGG 0.694470 1_2:+74818841 None:intergenic
ATCGGCGAGGAAATGAACGG+CGG 0.707383 1_2:+74819695 None:intergenic
CCGGTGATTGAAGCTGACGA+CGG 0.709175 1_2:-74819597 Msa0092400:CDS
TCCATACTATAATCCAACGG+AGG 0.710511 1_2:+74819477 None:intergenic
GTAAACCCTAGAATTGACGG+AGG 0.732924 1_2:+74819812 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAATATATATTTGAT+TGG + chr1_2:74817542-74817561 None:intergenic 10.0%
!!! ATAATTTGATCATATTGATT+AGG - chr1_2:74817418-74817437 Msa0092400:CDS 15.0%
!! AAATAGATTAAATATGAGTA+TGG - chr1_2:74817570-74817589 Msa0092400:CDS 15.0%
!!! CTATCTAAAATAACTAAAAT+TGG - chr1_2:74818279-74818298 Msa0092400:intron 15.0%
!! AGTATTCTTCATAAAAACAA+CGG + chr1_2:74816859-74816878 None:intergenic 20.0%
!! AATAAAGATTCAAAAGAAAG+AGG + chr1_2:74817352-74817371 None:intergenic 20.0%
!! TGTGCGTTATATAATAATTA+TGG - chr1_2:74817386-74817405 Msa0092400:CDS 20.0%
!!! TAAGTAAAAATCATTTTGCA+AGG - chr1_2:74817617-74817636 Msa0092400:CDS 20.0%
!! AATCTATCAGAAACAATAAA+TGG + chr1_2:74818305-74818324 None:intergenic 20.0%
!!! TTTTTTCCTTGAGTTTTATA+TGG - chr1_2:74819304-74819323 Msa0092400:CDS 20.0%
!! GTCTAATACAAGAAAATAAA+TGG - chr1_2:74819559-74819578 Msa0092400:CDS 20.0%
!! AAGTTCAATGGATAAAAAAA+AGG - chr1_2:74819646-74819665 Msa0092400:CDS 20.0%
!! AGTTCAATGGATAAAAAAAA+GGG - chr1_2:74819647-74819666 Msa0092400:CDS 20.0%
!! ATAAGATGTTCAACAATATA+AGG + chr1_2:74819705-74819724 None:intergenic 20.0%
!!! ATTAATTTTGTTGCTTACTT+TGG - chr1_2:74819749-74819768 Msa0092400:CDS 20.0%
!!! TTAATTTTGTTGCTTACTTT+GGG - chr1_2:74819750-74819769 Msa0092400:CDS 20.0%
!! GAAACTAAGTATGTAATATT+TGG - chr1_2:74819871-74819890 Msa0092400:CDS 20.0%
!! TTTCTATATAAATCCAATAG+CGG + chr1_2:74819976-74819995 None:intergenic 20.0%
!! TTTTCGAACATAAGAAGTAA+CGG + chr1_2:74816210-74816229 None:intergenic 25.0%
! TTAACAGTGAAATCATTCAA+CGG + chr1_2:74816534-74816553 None:intergenic 25.0%
!! ATTTCACTGTTAATTTTCCA+CGG - chr1_2:74816541-74816560 Msa0092400:three_prime_UTR 25.0%
!! GTTTTTATGAAGAATACTAG+AGG - chr1_2:74816861-74816880 Msa0092400:intron 25.0%
!! AAACATGCATTTTATCTAGT+TGG - chr1_2:74817441-74817460 Msa0092400:CDS 25.0%
!!! ACTTAATGTTGCTTTCAAAA+TGG - chr1_2:74817509-74817528 Msa0092400:CDS 25.0%
! AGTGTTTATCATCTGTTTAA+AGG - chr1_2:74817722-74817741 Msa0092400:CDS 25.0%
! CAACAAATCAAATGTTAACA+TGG + chr1_2:74817763-74817782 None:intergenic 25.0%
! TTTGTTGAATTCAGGAAATT+TGG - chr1_2:74817844-74817863 Msa0092400:CDS 25.0%
!! TAGAACATAGAAGTGATTTT+AGG - chr1_2:74817880-74817899 Msa0092400:intron 25.0%
!! GTAAAATTTTGTGAAACCAA+TGG - chr1_2:74817907-74817926 Msa0092400:intron 25.0%
! AAAAAGGAAACGAAAAAACA+AGG + chr1_2:74818003-74818022 None:intergenic 25.0%
!! TGATTTTTCTATATCTGACT+TGG - chr1_2:74818133-74818152 Msa0092400:intron 25.0%
!!! ATTGTTTCTGATAGATTACA+TGG - chr1_2:74818308-74818327 Msa0092400:intron 25.0%
!!! TTGTTTCTGATAGATTACAT+GGG - chr1_2:74818309-74818328 Msa0092400:intron 25.0%
! AAAGTTGGAAAAACTTGAAA+CGG + chr1_2:74818593-74818612 None:intergenic 25.0%
!!! AGTGGATTAATTGATAACAT+AGG - chr1_2:74819276-74819295 Msa0092400:CDS 25.0%
!! ATTAATTGATAACATAGGTC+TGG - chr1_2:74819281-74819300 Msa0092400:CDS 25.0%
! AAAAGTAAATGAAAATGCAG+AGG - chr1_2:74819440-74819459 Msa0092400:CDS 25.0%
! AAAGTAAATGAAAATGCAGA+GGG - chr1_2:74819441-74819460 Msa0092400:CDS 25.0%
!!! AGTATTGATTTTCTGTTATG+GGG + chr1_2:74819483-74819502 None:intergenic 25.0%
!!! GAGTATTGATTTTCTGTTAT+GGG + chr1_2:74819484-74819503 None:intergenic 25.0%
! TTCATTGTTCAGAACTTTAT+TGG - chr1_2:74819591-74819610 Msa0092400:CDS 25.0%
! TCATTGTTCAGAACTTTATT+GGG - chr1_2:74819592-74819611 Msa0092400:CDS 25.0%
! GTTCAATGGATAAAAAAAAG+GGG - chr1_2:74819648-74819667 Msa0092400:CDS 25.0%
! GCAACAAAATTAATTGAACA+TGG + chr1_2:74819743-74819762 None:intergenic 25.0%
!! TTTGTTTGTCTTATTGAAAC+CGG - chr1_2:74819841-74819860 Msa0092400:CDS 25.0%
! TAATATTTCCTAGAGTACAA+TGG - chr1_2:74819927-74819946 Msa0092400:CDS 25.0%
! TTCTATATAAATCCAATAGC+GGG + chr1_2:74819975-74819994 None:intergenic 25.0%
GTAATCAACAAATTCTGCAA+CGG + chr1_2:74816717-74816736 None:intergenic 30.0%
! TTGTTGATTACTGATGTTCA+TGG - chr1_2:74816726-74816745 Msa0092400:intron 30.0%
AATGCTATATTTGCATGAAG+AGG - chr1_2:74817671-74817690 Msa0092400:CDS 30.0%
TTGAATTCAGGAAATTTGGT+TGG - chr1_2:74817848-74817867 Msa0092400:intron 30.0%
TGAATTCAGGAAATTTGGTT+GGG - chr1_2:74817849-74817868 Msa0092400:intron 30.0%
AAACCAATGGATACCATTAT+TGG - chr1_2:74817920-74817939 Msa0092400:intron 30.0%
AACCAATGGATACCATTATT+GGG - chr1_2:74817921-74817940 Msa0092400:intron 30.0%
AATCTCATAAGTCCCAATAA+TGG + chr1_2:74817936-74817955 None:intergenic 30.0%
!!! CGTTTCCTTTTTTTGAAATC+TGG - chr1_2:74818011-74818030 Msa0092400:intron 30.0%
GCAATCCAGATTTCAAAAAA+AGG + chr1_2:74818019-74818038 None:intergenic 30.0%
AGACATAAGAAATCAAAAGC+AGG + chr1_2:74818170-74818189 None:intergenic 30.0%
!! GATTCTTCGTATCATTTTTG+TGG - chr1_2:74818190-74818209 Msa0092400:intron 30.0%
!! AAAGTACTGTAACTCAACAA+TGG + chr1_2:74818532-74818551 None:intergenic 30.0%
!! GTTGAAAAAGATTTTAACCC+CGG + chr1_2:74818670-74818689 None:intergenic 30.0%
!!! GGGGTTAAAATCTTTTTCAA+CGG - chr1_2:74818669-74818688 Msa0092400:intron 30.0%
AGTGAATCAAAGTTCTCAAT+AGG - chr1_2:74819081-74819100 Msa0092400:CDS 30.0%
GTGAATCAAAGTTCTCAATA+GGG - chr1_2:74819082-74819101 Msa0092400:CDS 30.0%
!!! GGTATTTTTAGCTGTCTTAT+TGG - chr1_2:74819183-74819202 Msa0092400:CDS 30.0%
GTTTGTTCTAATCAAGTGAT+GGG - chr1_2:74819225-74819244 Msa0092400:CDS 30.0%
TCATGACCATATAAAACTCA+AGG + chr1_2:74819313-74819332 None:intergenic 30.0%
! CTTTCTGTCAATATTTTCCT+AGG + chr1_2:74819386-74819405 None:intergenic 30.0%
TTGACAGAAAGTAGAGAAAA+AGG - chr1_2:74819395-74819414 Msa0092400:CDS 30.0%
TGACAGAAAGTAGAGAAAAA+GGG - chr1_2:74819396-74819415 Msa0092400:CDS 30.0%
!!! CGAGTATTGATTTTCTGTTA+TGG + chr1_2:74819485-74819504 None:intergenic 30.0%
ATGAGTATTCTCATGTGAAT+AGG - chr1_2:74819517-74819536 Msa0092400:CDS 30.0%
CATTGTTCAGAACTTTATTG+GGG - chr1_2:74819593-74819612 Msa0092400:CDS 30.0%
! TTGTTTGTCTTATTGAAACC+GGG - chr1_2:74819842-74819861 Msa0092400:CDS 30.0%
ATACTTAGTTTCATTGTTCC+CGG + chr1_2:74819863-74819882 None:intergenic 30.0%
TCTATATAAATCCAATAGCG+GGG + chr1_2:74819974-74819993 None:intergenic 30.0%
! ATAAGAAGTAACGGAATCGA+AGG + chr1_2:74816201-74816220 None:intergenic 35.0%
GGTTGAATGAAAATGAGTGA+GGG + chr1_2:74816234-74816253 None:intergenic 35.0%
TGGTTGAATGAAAATGAGTG+AGG + chr1_2:74816235-74816254 None:intergenic 35.0%
GTAGTAAACCCTAGAATTGA+CGG + chr1_2:74816358-74816377 None:intergenic 35.0%
! TGTTAATTTTCCACGGATTC+CGG - chr1_2:74816548-74816567 Msa0092400:three_prime_UTR 35.0%
GGATCCATACTATAATCCAA+CGG + chr1_2:74816693-74816712 None:intergenic 35.0%
! TGATGTTCATGGTTTGACTT+GGG - chr1_2:74816737-74816756 Msa0092400:intron 35.0%
TCCTGGAATGAGAATCAAAA+TGG - chr1_2:74817208-74817227 Msa0092400:CDS 35.0%
AATGAGAATCAAAATGGCTG+TGG - chr1_2:74817214-74817233 Msa0092400:CDS 35.0%
! TTTGACTGAGAATGCTTTTG+TGG - chr1_2:74817471-74817490 Msa0092400:CDS 35.0%
! GTTGCTTTCAAAATGGAATG+TGG - chr1_2:74817516-74817535 Msa0092400:CDS 35.0%
TTTGCATGAAGAGGTTGAAA+TGG - chr1_2:74817680-74817699 Msa0092400:CDS 35.0%
TTGCATGAAGAGGTTGAAAT+GGG - chr1_2:74817681-74817700 Msa0092400:CDS 35.0%
TTGTTCAGTTGCTTCTGTTA+CGG - chr1_2:74817780-74817799 Msa0092400:CDS 35.0%
TTCCTGAATTCAACAAAGCA+GGG + chr1_2:74817841-74817860 None:intergenic 35.0%
TTTCCTGAATTCAACAAAGC+AGG + chr1_2:74817842-74817861 None:intergenic 35.0%
AGGAAACGAAAAAACAAGGA+AGG + chr1_2:74817999-74818018 None:intergenic 35.0%
AGGGTTCACTAATTCAACAA+TGG - chr1_2:74818492-74818511 Msa0092400:intron 35.0%
GGGTTCACTAATTCAACAAT+GGG - chr1_2:74818493-74818512 Msa0092400:intron 35.0%
! TCAAGTTTTTCCAACTTTCC+AGG - chr1_2:74818595-74818614 Msa0092400:intron 35.0%
TGATAACTTCCGTCTTTGTA+TGG - chr1_2:74818618-74818637 Msa0092400:intron 35.0%
GATAACTTCCGTCTTTGTAT+GGG - chr1_2:74818619-74818638 Msa0092400:intron 35.0%
! TTTTCAACGGATCTAAACGT+TGG - chr1_2:74818682-74818701 Msa0092400:intron 35.0%
ACCATTTGAACCACTTTCAA+CGG + chr1_2:74818857-74818876 None:intergenic 35.0%
! AGTAGTTTGTGTTAGCTCAA+TGG - chr1_2:74819162-74819181 Msa0092400:CDS 35.0%
! TAGCTGTCTTATTGGAATGT+TGG - chr1_2:74819191-74819210 Msa0092400:CDS 35.0%
! TTGGAATGTTGGCATGTTTT+AGG - chr1_2:74819202-74819221 Msa0092400:CDS 35.0%
! TGGAATGTTGGCATGTTTTA+GGG - chr1_2:74819203-74819222 Msa0092400:CDS 35.0%
! GGTTTGTTCTAATCAAGTGA+TGG - chr1_2:74819224-74819243 Msa0092400:CDS 35.0%
TGTGCATATATTCTCACAAG+TGG - chr1_2:74819258-74819277 Msa0092400:CDS 35.0%
TGATATATGATGCCTGTTTC+TGG - chr1_2:74819330-74819349 Msa0092400:CDS 35.0%
AAAAAAGATGCAGCTTCTCA+TGG - chr1_2:74819619-74819638 Msa0092400:CDS 35.0%
AAAGAAAACAGCATACTGCA+AGG + chr1_2:74819823-74819842 None:intergenic 35.0%
ATTTCCTAGAGTACAATGGT+TGG - chr1_2:74819931-74819950 Msa0092400:CDS 35.0%
!!! TTGAGTGTGGTTGCGTTTTT+TGG + chr1_2:74816288-74816307 None:intergenic 40.0%
TAAACCCTAGAATTGACGGA+GGG + chr1_2:74816354-74816373 None:intergenic 40.0%
AGAAGAGGTGAGAGATTGTT+CGG + chr1_2:74816417-74816436 None:intergenic 40.0%
AAGCTTAGCGAAAACCTCAT+CGG + chr1_2:74816502-74816521 None:intergenic 40.0%
ATCGAATCAGCACAAAACCT+CGG + chr1_2:74816663-74816682 None:intergenic 40.0%
! TGATTCGATTTTTCCTCCGT+TGG - chr1_2:74816674-74816693 Msa0092400:intron 40.0%
TCCTCCGTTGGATTATAGTA+TGG - chr1_2:74816686-74816705 Msa0092400:intron 40.0%
TCCATACTATAATCCAACGG+AGG + chr1_2:74816690-74816709 None:intergenic 40.0%
ATCAACAAATTCTGCAACGG+AGG + chr1_2:74816714-74816733 None:intergenic 40.0%
CTGATGTTCATGGTTTGACT+TGG - chr1_2:74816736-74816755 Msa0092400:intron 40.0%
! ACTAGAGGTGCAATGTTCAT+CGG - chr1_2:74816876-74816895 Msa0092400:intron 40.0%
! CTGTTCGATTAGTTCCGAAT+CGG - chr1_2:74816910-74816929 Msa0092400:intron 40.0%
AAGACACAATCTCGACACAT+CGG + chr1_2:74816961-74816980 None:intergenic 40.0%
! GTCGGATTTTGTGTTGAAAG+CGG - chr1_2:74817151-74817170 Msa0092400:exon 40.0%
!!! GCCATTTTGATTCTCATTCC+AGG + chr1_2:74817212-74817231 None:intergenic 40.0%
ATGATTCTTCCAGGACTACT+TGG - chr1_2:74817243-74817262 Msa0092400:CDS 40.0%
TGAAGAGGTTGAAATGGGTA+AGG - chr1_2:74817686-74817705 Msa0092400:CDS 40.0%
! TACCCTGCTTTGTTGAATTC+AGG - chr1_2:74817836-74817855 Msa0092400:CDS 40.0%
TTCAGGAAATTTGGTTGGGT+TGG - chr1_2:74817853-74817872 Msa0092400:intron 40.0%
GTCCCAATAATGGTATCCAT+TGG + chr1_2:74817926-74817945 None:intergenic 40.0%
TTGGAAGTTTGCAACACTTC+AGG + chr1_2:74818340-74818359 None:intergenic 40.0%
! AAGTGTTGCAAACTTCCAAG+TGG - chr1_2:74818341-74818360 Msa0092400:intron 40.0%
AGTGTTGCAAACTTCCAAGT+GGG - chr1_2:74818342-74818361 Msa0092400:intron 40.0%
TGAACCCTGTGATAGAAAAG+GGG + chr1_2:74818480-74818499 None:intergenic 40.0%
GTGAACCCTGTGATAGAAAA+GGG + chr1_2:74818481-74818500 None:intergenic 40.0%
AGTGAACCCTGTGATAGAAA+AGG + chr1_2:74818482-74818501 None:intergenic 40.0%
! AGTTACAGTACTTTTCCTGC+TGG - chr1_2:74818538-74818557 Msa0092400:intron 40.0%
AACGGAAAATAGATCATGCC+TGG + chr1_2:74818575-74818594 None:intergenic 40.0%
GAAGTTATCACCTGGAAAGT+TGG + chr1_2:74818608-74818627 None:intergenic 40.0%
AGGAGTTACCCATACAAAGA+CGG + chr1_2:74818630-74818649 None:intergenic 40.0%
CTTTGTATGGGTAACTCCTT+TGG - chr1_2:74818631-74818650 Msa0092400:intron 40.0%
ACAAAATCTGTGCCAAAGGA+AGG + chr1_2:74818754-74818773 None:intergenic 40.0%
! CCTTTGGCACAGATTTTGTT+CGG - chr1_2:74818755-74818774 Msa0092400:intron 40.0%
AACTGCAACTCAATGAAACC+CGG - chr1_2:74818784-74818803 Msa0092400:intron 40.0%
CCAAATAGCTGAAACGTTAC+AGG + chr1_2:74818811-74818830 None:intergenic 40.0%
CCTGTAACGTTTCAGCTATT+TGG - chr1_2:74818808-74818827 Msa0092400:intron 40.0%
CCATTTGAACCACTTTCAAC+GGG + chr1_2:74818856-74818875 None:intergenic 40.0%
TCAAATGGTACTGTTAGCAC+AGG - chr1_2:74818868-74818887 Msa0092400:CDS 40.0%
AGTAAGTCGAATCCTCAAGA+GGG + chr1_2:74818939-74818958 None:intergenic 40.0%
CTTACTCAAAATTGCTCGAC+AGG - chr1_2:74818953-74818972 Msa0092400:CDS 40.0%
ATGCACATAAGTAGCTGTAC+AGG - chr1_2:74819044-74819063 Msa0092400:CDS 40.0%
!!! TTTTGGTTTGCACCAGAAAC+AGG + chr1_2:74819345-74819364 None:intergenic 40.0%
!! GTGTTTTTGCTCTGTGGTTT+TGG + chr1_2:74819362-74819381 None:intergenic 40.0%
! TTTTCTGTTATGGGGTAGCA+GGG + chr1_2:74819475-74819494 None:intergenic 40.0%
! ATTTTCTGTTATGGGGTAGC+AGG + chr1_2:74819476-74819495 None:intergenic 40.0%
TCTCATGGCATGAAGTTCAA+TGG - chr1_2:74819634-74819653 Msa0092400:CDS 40.0%
TAAGGACACTCACTTCAGAT+GGG + chr1_2:74819687-74819706 None:intergenic 40.0%
ATAAGGACACTCACTTCAGA+TGG + chr1_2:74819688-74819707 None:intergenic 40.0%
CATACTGCAAGGTCAAAAGA+TGG + chr1_2:74819812-74819831 None:intergenic 40.0%
CTAACCAACCATTGTACTCT+AGG + chr1_2:74819938-74819957 None:intergenic 40.0%
AGTACTTGGCGGTTCATGAT+TGG + chr1_2:74816255-74816274 None:intergenic 45.0%
!!! GTGGTTGCGTTTTTTGGAGA+CGG + chr1_2:74816282-74816301 None:intergenic 45.0%
AAATCCCCTCCGTCAATTCT+AGG - chr1_2:74816346-74816365 Msa0092400:three_prime_UTR 45.0%
AATCCCCTCCGTCAATTCTA+GGG - chr1_2:74816347-74816366 Msa0092400:three_prime_UTR 45.0%
AAACCCTAGAATTGACGGAG+GGG + chr1_2:74816353-74816372 None:intergenic 45.0%
GTAAACCCTAGAATTGACGG+AGG + chr1_2:74816355-74816374 None:intergenic 45.0%
AGGGTTTACTACTTCCCTCA+AGG - chr1_2:74816366-74816385 Msa0092400:three_prime_UTR 45.0%
TGTTCGGAAGTGAAGTAGCT+TGG + chr1_2:74816401-74816420 None:intergenic 45.0%
!!! AACCTCATCGGTTTTCGGAT+CGG + chr1_2:74816490-74816509 None:intergenic 45.0%
!!! GCGAAAACCTCATCGGTTTT+CGG + chr1_2:74816495-74816514 None:intergenic 45.0%
ACTCCTTCTGATGCGAACAA+CGG - chr1_2:74816621-74816640 Msa0092400:intron 45.0%
GAGTTTCGTCACATTTACCG+TGG - chr1_2:74816759-74816778 Msa0092400:intron 45.0%
GTTCACAAACCTACTCCAAC+CGG + chr1_2:74816811-74816830 None:intergenic 45.0%
!! AACGCTAAGAAGCTTGTTGC+TGG - chr1_2:74816828-74816847 Msa0092400:intron 45.0%
GAACTAATCGAACAGCACGA+CGG + chr1_2:74816905-74816924 None:intergenic 45.0%
AGATTGTGTCTTCCGATCTG+TGG - chr1_2:74816969-74816988 Msa0092400:intron 45.0%
CTACTTCTCACTCCACAGAT+CGG + chr1_2:74816984-74817003 None:intergenic 45.0%
GATCTGTGGAGTGAGAAGTA+GGG - chr1_2:74816983-74817002 Msa0092400:intron 45.0%
AGTGGTGTATTATCCGAGAG+CGG - chr1_2:74817124-74817143 Msa0092400:three_prime_UTR 45.0%
! GGATTTTGTGTTGAAAGCGG+AGG - chr1_2:74817154-74817173 Msa0092400:exon 45.0%
!! ATGAGTGTTACTTGGTGTCC+TGG - chr1_2:74817191-74817210 Msa0092400:CDS 45.0%
TGGAGACTGATGATTCTTCC+AGG - chr1_2:74817234-74817253 Msa0092400:CDS 45.0%
TCCAGGACTACTTGGTTTCA+AGG - chr1_2:74817251-74817270 Msa0092400:CDS 45.0%
ACCTTGAAACCAAGTAGTCC+TGG + chr1_2:74817255-74817274 None:intergenic 45.0%
GTTTCAAGGTGTAGTGTCTC+AGG - chr1_2:74817265-74817284 Msa0092400:CDS 45.0%
AGGTTTCTGTTCCTGATCGT+GGG - chr1_2:74817285-74817304 Msa0092400:CDS 45.0%
CATACATGAAGCATACGCCA+AGG + chr1_2:74817326-74817345 None:intergenic 45.0%
CTTGGCGTATGCTTCATGTA+TGG - chr1_2:74817324-74817343 Msa0092400:CDS 45.0%
TGAGTATGGAAGAGTTGCTG+TGG - chr1_2:74817584-74817603 Msa0092400:CDS 45.0%
AAAGAAGTTCCACCTGCCAA+GGG + chr1_2:74818372-74818391 None:intergenic 45.0%
! GTCCTTTTCAATGGGGGAAA+GGG + chr1_2:74818418-74818437 None:intergenic 45.0%
! AGTCCTTTTCAATGGGGGAA+AGG + chr1_2:74818419-74818438 None:intergenic 45.0%
! CCTCTAGTCCTTTTCAATGG+GGG + chr1_2:74818424-74818443 None:intergenic 45.0%
! CCCTCTAGTCCTTTTCAATG+GGG + chr1_2:74818425-74818444 None:intergenic 45.0%
CCCCATTGAAAAGGACTAGA+GGG - chr1_2:74818422-74818441 Msa0092400:intron 45.0%
! CCCCTCTAGTCCTTTTCAAT+GGG + chr1_2:74818426-74818445 None:intergenic 45.0%
CCCATTGAAAAGGACTAGAG+GGG - chr1_2:74818423-74818442 Msa0092400:intron 45.0%
! ACCCCTCTAGTCCTTTTCAA+TGG + chr1_2:74818427-74818446 None:intergenic 45.0%
!! AAAAGGACTAGAGGGGTATC+TGG - chr1_2:74818430-74818449 Msa0092400:intron 45.0%
!! AAAGGACTAGAGGGGTATCT+GGG - chr1_2:74818431-74818450 Msa0092400:intron 45.0%
! GTATCTGGGGTGTTAACTGA+TGG - chr1_2:74818445-74818464 Msa0092400:intron 45.0%
! GAGACCCCTTTTCTATCACA+GGG - chr1_2:74818473-74818492 Msa0092400:intron 45.0%
CAAAGACGGAAGTTATCACC+TGG + chr1_2:74818616-74818635 None:intergenic 45.0%
CAAAGGAAGGCAAACTACTC+TGG + chr1_2:74818741-74818760 None:intergenic 45.0%
! CAGAGTAGTTTGCCTTCCTT+TGG - chr1_2:74818739-74818758 Msa0092400:intron 45.0%
CCGAACAAAATCTGTGCCAA+AGG + chr1_2:74818758-74818777 None:intergenic 45.0%
ACTGCAACTCAATGAAACCC+GGG - chr1_2:74818785-74818804 Msa0092400:intron 45.0%
CCCGTTGAAAGTGGTTCAAA+TGG - chr1_2:74818853-74818872 Msa0092400:CDS 45.0%
ACAGGAGATGACAGCAGTAA+GGG - chr1_2:74818886-74818905 Msa0092400:CDS 45.0%
AGGCATTAACAACCCTCTTG+AGG - chr1_2:74818924-74818943 Msa0092400:CDS 45.0%
GAGTAAGTCGAATCCTCAAG+AGG + chr1_2:74818940-74818959 None:intergenic 45.0%
AAATTGCTCGACAGGCTTGA+TGG - chr1_2:74818961-74818980 Msa0092400:CDS 45.0%
CCTCAACTGTTGAGGCTATT+TGG + chr1_2:74818993-74819012 None:intergenic 45.0%
CCAAATAGCCTCAACAGTTG+AGG - chr1_2:74818990-74819009 Msa0092400:CDS 45.0%
!!! CTAGGAGTGTTTTTGCTCTG+TGG + chr1_2:74819368-74819387 None:intergenic 45.0%
CACAGAGCAAAAACACTCCT+AGG - chr1_2:74819366-74819385 Msa0092400:CDS 45.0%
! ACTTTGGGTTCTTTCCATGC+AGG - chr1_2:74819765-74819784 Msa0092400:CDS 45.0%
TCTCAATTTGACCCCGCTAT+TGG - chr1_2:74819960-74819979 Msa0092400:exon 45.0%
TTGGAGACGGTGGTAGTACT+TGG + chr1_2:74816269-74816288 None:intergenic 50.0%
!!! GTTGCGTTTTTTGGAGACGG+TGG + chr1_2:74816279-74816298 None:intergenic 50.0%
ATTGACGGAGGGGATTTGCA+CGG + chr1_2:74816343-74816362 None:intergenic 50.0%
CTACTTCCCTCAAGGTCACA+TGG - chr1_2:74816374-74816393 Msa0092400:three_prime_UTR 50.0%
CTTGGTCCATGTGACCTTGA+GGG + chr1_2:74816383-74816402 None:intergenic 50.0%
TAGGGACGAGAGAGAAGAAG+AGG + chr1_2:74816432-74816451 None:intergenic 50.0%
GAGACGGAGCAGAGAATGTA+GGG + chr1_2:74816450-74816469 None:intergenic 50.0%
!!! GTGGTGGATTTTCTGTTCCG+AGG - chr1_2:74816643-74816662 Msa0092400:intron 50.0%
AACCGGTGGTCAACAAATGC+CGG + chr1_2:74816794-74816813 None:intergenic 50.0%
CGATCTGTGGAGTGAGAAGT+AGG - chr1_2:74816982-74817001 Msa0092400:intron 50.0%
GGTGGATGAAGAAGAGAAGC+TGG - chr1_2:74817004-74817023 Msa0092400:intron 50.0%
GGATGAAGAAGAGAAGCTGG+TGG - chr1_2:74817007-74817026 Msa0092400:intron 50.0%
! AGAGAAGCTGGTGGATGAGA+AGG - chr1_2:74817016-74817035 Msa0092400:intron 50.0%
!!! TGGATGAGAAGGCGTTTTCG+AGG - chr1_2:74817027-74817046 Msa0092400:intron 50.0%
GTGGTGTATTATCCGAGAGC+GGG - chr1_2:74817125-74817144 Msa0092400:three_prime_UTR 50.0%
TGGTGTATTATCCGAGAGCG+GGG - chr1_2:74817126-74817145 Msa0092400:three_prime_UTR 50.0%
TGTGTTGAAAGCGGAGGTTG+TGG - chr1_2:74817160-74817179 Msa0092400:CDS 50.0%
! ATGCGGCGATGAGTGTTACT+TGG - chr1_2:74817183-74817202 Msa0092400:CDS 50.0%
CAGGTTTCTGTTCCTGATCG+TGG - chr1_2:74817284-74817303 Msa0092400:CDS 50.0%
GGTTTCTGTTCCTGATCGTG+GGG - chr1_2:74817286-74817305 Msa0092400:CDS 50.0%
GAAAGAAGTTCCACCTGCCA+AGG + chr1_2:74818373-74818392 None:intergenic 50.0%
CCCCCATTGAAAAGGACTAG+AGG - chr1_2:74818421-74818440 Msa0092400:intron 50.0%
!! AAGGACTAGAGGGGTATCTG+GGG - chr1_2:74818432-74818451 Msa0092400:intron 50.0%
! GGGGTGTTAACTGATGGAGA+TGG - chr1_2:74818451-74818470 Msa0092400:intron 50.0%
! GGAGACCCCTTTTCTATCAC+AGG - chr1_2:74818472-74818491 Msa0092400:intron 50.0%
! TACTTTTCCTGCTGGCATGC+AGG - chr1_2:74818546-74818565 Msa0092400:intron 50.0%
! ACTTTTCCTGCTGGCATGCA+GGG - chr1_2:74818547-74818566 Msa0092400:intron 50.0%
AACGTTGGCAGTTCTCACTC+TGG - chr1_2:74818697-74818716 Msa0092400:intron 50.0%
TAGCTGAAACGTTACAGGCC+CGG + chr1_2:74818806-74818825 None:intergenic 50.0%
ACAGAACAGCCCGTTGAAAG+TGG - chr1_2:74818844-74818863 Msa0092400:intron 50.0%
CACAGGAGATGACAGCAGTA+AGG - chr1_2:74818885-74818904 Msa0092400:CDS 50.0%
AAGGGCTGCAACGAAACTGA+AGG - chr1_2:74818904-74818923 Msa0092400:CDS 50.0%
CTGTTGAGGCTATTTGGCAC+TGG + chr1_2:74818987-74819006 None:intergenic 50.0%
ATAGCACGCCTCAACTGTTG+AGG + chr1_2:74819001-74819020 None:intergenic 50.0%
AAAAGATGGTCCTGTCTGCG+TGG + chr1_2:74819798-74819817 None:intergenic 50.0%
GAGACGGTGGTAGTACTTGG+CGG + chr1_2:74816266-74816285 None:intergenic 55.0%
! CCAGAGTTTGGGGTTGAGTG+TGG + chr1_2:74816301-74816320 None:intergenic 55.0%
CCACACTCAACCCCAAACTC+TGG - chr1_2:74816298-74816317 Msa0092400:three_prime_UTR 55.0%
CGATAGCTCGCCAGAGTTTG+GGG + chr1_2:74816311-74816330 None:intergenic 55.0%
GCGATAGCTCGCCAGAGTTT+GGG + chr1_2:74816312-74816331 None:intergenic 55.0%
AAACTCTGGCGAGCTATCGC+CGG - chr1_2:74816312-74816331 Msa0092400:three_prime_UTR 55.0%
GCTTGGTCCATGTGACCTTG+AGG + chr1_2:74816384-74816403 None:intergenic 55.0%
GGAGACGGAGCAGAGAATGT+AGG + chr1_2:74816451-74816470 None:intergenic 55.0%
GAGGAAATGAACGGCGGAGA+CGG + chr1_2:74816466-74816485 None:intergenic 55.0%
ATCGGCGAGGAAATGAACGG+CGG + chr1_2:74816472-74816491 None:intergenic 55.0%
CGGATCGGCGAGGAAATGAA+CGG + chr1_2:74816475-74816494 None:intergenic 55.0%
GCTTCAATCACCGGAATCCG+TGG + chr1_2:74816561-74816580 None:intergenic 55.0%
CCGTCGTCAGCTTCAATCAC+CGG + chr1_2:74816570-74816589 None:intergenic 55.0%
CCGGTGATTGAAGCTGACGA+CGG - chr1_2:74816567-74816586 Msa0092400:intron 55.0%
TTGAAGCTGACGACGGTGAG+AGG - chr1_2:74816574-74816593 Msa0092400:intron 55.0%
CCACCGTTGTTCGCATCAGA+AGG + chr1_2:74816627-74816646 None:intergenic 55.0%
CCTTCTGATGCGAACAACGG+TGG - chr1_2:74816624-74816643 Msa0092400:intron 55.0%
TCTGATGCGAACAACGGTGG+TGG - chr1_2:74816627-74816646 Msa0092400:intron 55.0%
! GGCATTTGTTGACCACCGGT+TGG - chr1_2:74816793-74816812 Msa0092400:intron 55.0%
! TGTTGACCACCGGTTGGAGT+AGG - chr1_2:74816799-74816818 Msa0092400:intron 55.0%
CACAAACCTACTCCAACCGG+TGG + chr1_2:74816808-74816827 None:intergenic 55.0%
CTGTGGAGTGAGAAGTAGGG+TGG - chr1_2:74816986-74817005 Msa0092400:intron 55.0%
!!! GAGAAGGCGTTTTCGAGGCA+CGG - chr1_2:74817032-74817051 Msa0092400:intron 55.0%
!!! AGAAGGCGTTTTCGAGGCAC+GGG - chr1_2:74817033-74817052 Msa0092400:intron 55.0%
GAAATGGCAGCACAGGGGAT+GGG - chr1_2:74817095-74817114 Msa0092400:intron 55.0%
AAATGGCAGCACAGGGGATG+GGG - chr1_2:74817096-74817115 Msa0092400:intron 55.0%
ACAGGGGATGGGGTTTGAAG+TGG - chr1_2:74817106-74817125 Msa0092400:intron 55.0%
TGTATTATCCGAGAGCGGGG+TGG - chr1_2:74817129-74817148 Msa0092400:three_prime_UTR 55.0%
GAAAGCGGAGGTTGTGGATG+CGG - chr1_2:74817166-74817185 Msa0092400:CDS 55.0%
! GGAAAGGGCGTATGAAGGGA+AGG + chr1_2:74818403-74818422 None:intergenic 55.0%
! TGGGGGAAAGGGCGTATGAA+GGG + chr1_2:74818407-74818426 None:intergenic 55.0%
! ATGGGGGAAAGGGCGTATGA+AGG + chr1_2:74818408-74818427 None:intergenic 55.0%
CGCCCTTTCCCCCATTGAAA+AGG - chr1_2:74818413-74818432 Msa0092400:intron 55.0%
CTTTGGCAGCAACACAGTGC+CGG - chr1_2:74818648-74818667 Msa0092400:intron 55.0%
TTTGGCAGCAACACAGTGCC+GGG - chr1_2:74818649-74818668 Msa0092400:intron 55.0%
!! GGCAAACTACTCTGGCTCTC+TGG + chr1_2:74818733-74818752 None:intergenic 55.0%
AGCTGAAACGTTACAGGCCC+GGG + chr1_2:74818805-74818824 None:intergenic 55.0%
!! TGCGTGGAGAAGTACCTGCA+TGG + chr1_2:74819782-74819801 None:intergenic 55.0%
AGGTACTTCTCCACGCAGAC+AGG - chr1_2:74819785-74819804 Msa0092400:CDS 55.0%
GGCGATAGCTCGCCAGAGTT+TGG + chr1_2:74816313-74816332 None:intergenic 60.0%
!!! CATCGGTTTTCGGATCGGCG+AGG + chr1_2:74816485-74816504 None:intergenic 60.0%
CGCCGATCCGAAAACCGATG+AGG - chr1_2:74816485-74816504 Msa0092400:intron 60.0%
GTGGTCAACAAATGCCGGCG+CGG + chr1_2:74816789-74816808 None:intergenic 60.0%
! CGCCGGCATTTGTTGACCAC+CGG - chr1_2:74816789-74816808 Msa0092400:intron 60.0%
GTTCCGAATCGGAGTAGCGC+CGG - chr1_2:74816921-74816940 Msa0092400:intron 60.0%
ATCGGAGCAAACACCGCCAC+CGG + chr1_2:74816943-74816962 None:intergenic 60.0%
!! GCGTTTTCGAGGCACGGGAA+GGG - chr1_2:74817038-74817057 Msa0092400:intron 60.0%
!! CGTTTTCGAGGCACGGGAAG+GGG - chr1_2:74817039-74817058 Msa0092400:intron 60.0%
CGGGAAGGGGAAGTTGTCTC+CGG - chr1_2:74817052-74817071 Msa0092400:intron 60.0%
GAAGGGGAAGTTGTCTCCGG+TGG - chr1_2:74817055-74817074 Msa0092400:intron 60.0%
GGAAATGGCAGCACAGGGGA+TGG - chr1_2:74817094-74817113 Msa0092400:intron 60.0%
TTATCCGAGAGCGGGGTGGT+CGG - chr1_2:74817133-74817152 Msa0092400:three_prime_UTR 60.0%
AAATCCGACCACCCCGCTCT+CGG + chr1_2:74817140-74817159 None:intergenic 60.0%
CTGTTCCTGATCGTGGGGCT+TGG - chr1_2:74817291-74817310 Msa0092400:CDS 60.0%
GGGCTTGGAGAGGTTCACCT+TGG - chr1_2:74817306-74817325 Msa0092400:CDS 60.0%
CTTCCAAGTGGGTCAGCCCT+TGG - chr1_2:74818353-74818372 Msa0092400:intron 60.0%
! CGGCACTGTGTTGCTGCCAA+AGG + chr1_2:74818650-74818669 None:intergenic 60.0%
TTGGCAGCAACACAGTGCCG+GGG - chr1_2:74818650-74818669 Msa0092400:intron 60.0%
TTTACCGTGGAACGCCGCGC+CGG - chr1_2:74816772-74816791 Msa0092400:intron 65.0%
CCACCGGCGCTACTCCGATT+CGG + chr1_2:74816927-74816946 None:intergenic 65.0%
!! AATCGGAGTAGCGCCGGTGG+CGG - chr1_2:74816927-74816946 Msa0092400:intron 65.0%
!! GGCGTTTTCGAGGCACGGGA+AGG - chr1_2:74817037-74817056 Msa0092400:intron 65.0%
GGGGAAGTTGTCTCCGGTGG+CGG - chr1_2:74817058-74817077 Msa0092400:intron 65.0%
! GTTGTCTCCGGTGGCGGTTG+CGG - chr1_2:74817064-74817083 Msa0092400:intron 65.0%
GCGGCGGAAATGGCAGCACA+GGG - chr1_2:74817089-74817108 Msa0092400:intron 65.0%
CGGCGGAAATGGCAGCACAG+GGG - chr1_2:74817090-74817109 Msa0092400:intron 65.0%
CCTCTCCAAGCCCCACGATC+AGG + chr1_2:74817299-74817318 None:intergenic 65.0%
CCTGATCGTGGGGCTTGGAG+AGG - chr1_2:74817296-74817315 Msa0092400:CDS 65.0%
CTGCCAAGGGCTGACCCACT+TGG + chr1_2:74818359-74818378 None:intergenic 65.0%
CAAGTGGGTCAGCCCTTGGC+AGG - chr1_2:74818357-74818376 Msa0092400:intron 65.0%
GGGGATTTGCACGGCAGCGC+CGG + chr1_2:74816334-74816353 None:intergenic 70.0%
AATGCCGGCGCGGCGTTCCA+CGG + chr1_2:74816779-74816798 None:intergenic 70.0%
! CCGAATCGGAGTAGCGCCGG+TGG - chr1_2:74816924-74816943 Msa0092400:intron 70.0%
GGTTGCGGAGGCGGCGGAAA+TGG - chr1_2:74817079-74817098 Msa0092400:intron 70.0%
GGCGGCGGAAATGGCAGCAC+AGG - chr1_2:74817088-74817107 Msa0092400:intron 70.0%
GTGGGTCAGCCCTTGGCAGG+TGG - chr1_2:74818360-74818379 Msa0092400:intron 70.0%
CTGGCTCCCTGCATGCCAGC+AGG + chr1_2:74818556-74818575 None:intergenic 70.0%
CTGCTGGCATGCAGGGAGCC+AGG - chr1_2:74818554-74818573 Msa0092400:intron 70.0%
! GTCTCCGGTGGCGGTTGCGG+AGG - chr1_2:74817067-74817086 Msa0092400:intron 75.0%
! TCCGGTGGCGGTTGCGGAGG+CGG - chr1_2:74817070-74817089 Msa0092400:intron 75.0%
! GCCGCCTCCGCAACCGCCAC+CGG + chr1_2:74817074-74817093 None:intergenic 80.0%
!! GGTGGCGGTTGCGGAGGCGG+CGG - chr1_2:74817073-74817092 Msa0092400:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 74816146 74820040 74816146 ID=Msa0092400;Name=Msa0092400
chr1_2 mRNA 74816146 74820040 74816146 ID=Msa0092400-mRNA-1;Parent=Msa0092400;Name=Msa0092400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|0.33|0.25|4|384|608
chr1_2 exon 74816146 74816399 74816146 ID=Msa0092400-mRNA-1:exon:26371;Parent=Msa0092400-mRNA-1
chr1_2 exon 74816493 74816583 74816493 ID=Msa0092400-mRNA-1:exon:26370;Parent=Msa0092400-mRNA-1
chr1_2 exon 74817121 74817864 74817121 ID=Msa0092400-mRNA-1:exon:26369;Parent=Msa0092400-mRNA-1
chr1_2 exon 74818846 74820040 74818846 ID=Msa0092400-mRNA-1:exon:26368;Parent=Msa0092400-mRNA-1
chr1_2 five_prime_UTR 74819968 74820040 74819968 ID=Msa0092400-mRNA-1:five_prime_utr;Parent=Msa0092400-mRNA-1
chr1_2 CDS 74818846 74819967 74818846 ID=Msa0092400-mRNA-1:cds;Parent=Msa0092400-mRNA-1
chr1_2 CDS 74817160 74817864 74817160 ID=Msa0092400-mRNA-1:cds;Parent=Msa0092400-mRNA-1
chr1_2 three_prime_UTR 74817121 74817159 74817121 ID=Msa0092400-mRNA-1:three_prime_utr;Parent=Msa0092400-mRNA-1
chr1_2 three_prime_UTR 74816493 74816583 74816493 ID=Msa0092400-mRNA-1:three_prime_utr;Parent=Msa0092400-mRNA-1
chr1_2 three_prime_UTR 74816146 74816399 74816146 ID=Msa0092400-mRNA-1:three_prime_utr;Parent=Msa0092400-mRNA-1
Gene Sequence

>Msa0092400

ATGTTCGAAAAACCCTCACTCATTTTCATTCAACCAATCATGAACCGCCAAGTACTACCACCGTCTCCAAAAAACGCAACCACACTCAACCCCAAACTCTGGCGAGCTATCGCCGGCGCTGCCGTGCAAATCCCCTCCGTCAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTACTTCACTTCCGAACAATCTCTCACCTCTTCTTCTCTCTCGTCCCTACATTCTCTGCTCCGTCTCCGCCGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCGTTGAATGATTTCACTGTTAATTTTCCACGGATTCCGGTGATTGAAGCTGACGACGGTGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCGAACAACGGTGGTGGATTTTCTGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGTTGGATTATAGTATGGATCCTCCGTTGCAGAATTTGTTGATTACTGATGTTCATGGTTTGACTTGGGAGTTTCGTCACATTTACCGTGGAACGCCGCGCCGGCATTTGTTGACCACCGGTTGGAGTAGGTTTGTGAACGCTAAGAAGCTTGTTGCTGGTGATTCCGTTGTTTTTATGAAGAATACTAGAGGTGCAATGTTCATCGGAATCCGTCGTGCTGTTCGATTAGTTCCGAATCGGAGTAGCGCCGGTGGCGGTGTTTGCTCCGATGTGTCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAGTAGGGTGGATGAAGAAGAGAAGCTGGTGGATGAGAAGGCGTTTTCGAGGCACGGGAAGGGGAAGTTGTCTCCGGTGGCGGTTGCGGAGGCGGCGGAAATGGCAGCACAGGGGATGGGGTTTGAAGTGGTGTATTATCCGAGAGCGGGGTGGTCGGATTTTGTGTTGAAAGCGGAGGTTGTGGATGCGGCGATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAAGGTGTAGTGTCTCAGGTTTCTGTTCCTGATCGTGGGGCTTGGAGAGGTTCACCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTGGAACTTCTTTCTACTACACCTTCCCTTCATACGCCCTTTCCCCCATTGAAAAGGACTAGAGGGGTATCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACAGGGTTCACTAATTCAACAATGGGACAATTGAATCAACCATTGTTGAGTTACAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCCGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTTCCGTCTTTGTATGGGTAACTCCTTTGGCAGCAACACAGTGCCGGGGTTAAAATCTTTTTCAACGGATCTAAACGTTGGCAGTTCTCACTCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTTCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTGTAACGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACAGCCCGTTGAAAGTGGTTCAAATGGTACTGTTAGCACAGGAGATGACAGCAGTAAGGGCTGCAACGAAACTGAAGGCATTAACAACCCTCTTGAGGATTCGACTTACTCAAAATTGCTCGACAGGCTTGATGGCCAGTGCCAAATAGCCTCAACAGTTGAGGCGTGCTATCTGTGA
Protein sequence

>Msa0092400

MFEKPSLIFIQPIMNRQVLPPSPKNATTLNPKLWRAIAGAAVQIPSVNSRVYYFPQGHMDQATSLPNNLSPLLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFTVNFPRIPVIEADDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPLQNLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNAKKLVAGDSVVFMKNTRGAMFIGIRRAVRLVPNRSSAGGGVCSDVSRLCLPICGVRSRVDEEEKLVDEKAFSRHGKGKLSPVAVAEAAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSQVSVPDRGAWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPPLKRTRGVSGVLTDGDGDPFSITGFTNSTMGQLNQPLLSYSTFPAGMQGARHDLFSVSSFSNFPGDNFRLCMGNSFGSNTVPGLKSFSTDLNVGSSHSGDFSPESQSSLPSFGTDFVRNYNCNSMKPGPVTFQLFGAVIQTEQPVESGSNGTVSTGDDSSKGCNETEGINNPLEDSTYSKLLDRLDGQCQIASTVEACYL*