AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1430560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1430560 MtrunA17_Chr3g0115271 97.311 595 14 1 14 608 1 593 0.0 1197
Msa1430560 MtrunA17_Chr5g0424931 44.846 553 250 14 32 573 19 527 5.26e-146 432
Msa1430560 MtrunA17_Chr2g0326761 43.494 561 281 14 28 569 7 550 2.55e-129 395
Msa1430560 MtrunA17_Chr5g0417281 40.598 569 261 14 29 577 8 519 7.12e-128 386
Msa1430560 MtrunA17_Chr7g0264171 42.857 525 249 16 28 516 27 536 1.84e-124 380
Msa1430560 MtrunA17_Chr4g0028971 47.991 448 215 10 29 463 9 451 2.94e-124 382
Msa1430560 MtrunA17_Chr1g0181211 41.426 589 288 18 29 588 24 584 9.18e-122 375
Msa1430560 MtrunA17_Chr1g0199681 43.340 473 200 13 29 463 91 533 2.62e-118 367
Msa1430560 MtrunA17_Chr1g0178011 37.085 542 221 12 20 554 3 431 3.89e-107 330
Msa1430560 MtrunA17_Chr5g0436761 39.696 461 220 9 23 475 3 413 1.05e-99 311
Msa1430560 MtrunA17_Chr2g0277461 35.856 555 240 15 24 571 5 450 1.55e-98 308
Msa1430560 MtrunA17_Chr2g0289221 44.475 362 143 8 22 375 10 321 1.53e-91 286
Msa1430560 MtrunA17_Chr5g0417211 44.011 359 150 8 22 375 2 314 1.06e-89 283
Msa1430560 MtrunA17_Chr7g0264161 43.658 339 147 7 42 375 2 301 2.45e-85 268
Msa1430560 MtrunA17_Chr5g0424741 33.099 568 249 19 29 523 9 518 6.70e-75 248
Msa1430560 MtrunA17_Chr2g0277531 39.665 358 149 14 29 375 17 318 5.84e-72 234
Msa1430560 MtrunA17_Chr5g0424801 35.897 390 182 11 29 406 9 342 8.64e-70 230
Msa1430560 MtrunA17_Chr5g0425261 36.579 380 177 10 29 396 9 336 8.03e-69 228
Msa1430560 MtrunA17_Chr8g0376771 37.778 405 199 8 20 412 11 374 1.06e-68 239
Msa1430560 MtrunA17_Chr2g0276781 37.755 392 201 8 29 414 20 374 1.47e-68 235
Msa1430560 MtrunA17_Chr2g0282961 34.804 408 216 5 18 414 39 407 3.52e-68 233
Msa1430560 MtrunA17_Chr2g0285461 37.656 401 206 7 20 412 11 375 1.52e-67 236
Msa1430560 MtrunA17_Chr4g0009751 36.387 393 201 8 30 414 17 368 8.56e-66 226
Msa1430560 MtrunA17_Chr1g0156321 38.832 394 185 11 28 410 39 387 4.09e-65 229
Msa1430560 MtrunA17_Chr3g0109391 36.990 392 203 7 29 412 23 378 6.57e-65 228
Msa1430560 MtrunA17_Chr5g0433301 36.735 392 204 7 29 412 21 376 3.86e-64 226
Msa1430560 MtrunA17_Chr8g0385791 34.491 432 219 9 32 440 59 449 4.78e-64 225
Msa1430560 MtrunA17_Chr4g0046371 35.750 400 199 9 32 414 38 396 1.25e-62 219
Msa1430560 MtrunA17_Chr7g0239061 34.910 444 237 15 29 460 11 414 5.27e-62 217
Msa1430560 MtrunA17_Chr4g0070181 35.696 381 196 6 28 399 19 359 1.50e-60 218
Msa1430560 MtrunA17_Chr2g0326281 35.468 406 193 10 32 410 56 419 2.33e-59 212
Msa1430560 MtrunA17_Chr4g0029671 33.920 398 213 7 32 414 54 416 1.07e-57 207
Msa1430560 MtrunA17_Chr8g0346711 35.459 392 207 9 29 414 26 377 2.01e-57 204
Msa1430560 MtrunA17_Chr5g0425661 48.515 202 96 4 24 220 29 227 3.62e-54 184
Msa1430560 MtrunA17_Chr2g0301251 45.161 217 106 3 29 236 20 232 6.99e-54 198
Msa1430560 MtrunA17_Chr8g0389081 45.370 216 112 4 24 233 24 239 1.52e-50 188
Msa1430560 MtrunA17_Chr8g0389081 40.625 96 55 2 301 395 272 366 4.74e-11 66.2
Msa1430560 MtrunA17_Chr8g0356211 28.626 262 148 6 138 399 2 224 4.42e-30 120
Msa1430560 MtrunA17_Chr5g0425651 40.625 128 59 4 290 408 2 121 2.87e-24 98.2
Msa1430560 MtrunA17_Chr5g0424791 39.865 148 77 4 81 226 14 151 8.77e-22 92.0
Msa1430560 MtrunA17_Chr5g0419861 41.379 116 57 5 69 177 11 122 4.31e-14 69.7
Msa1430560 MtrunA17_Chr1g0178071 36.752 117 68 4 118 230 65 179 4.12e-12 67.8
Msa1430560 MtrunA17_Chr4g0072581 70.213 47 13 1 200 245 5 51 1.04e-11 60.8
Msa1430560 MtrunA17_Chr8g0345771 36.364 110 65 2 125 230 167 275 2.09e-11 66.6
Msa1430560 MtrunA17_Chr5g0422501 33.051 118 71 3 110 220 217 333 7.84e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1430560 AT1G77850.2 47.950 561 269 11 25 575 12 559 4.08e-164 482
Msa1430560 AT1G77850.1 47.950 561 269 11 25 575 12 559 4.18e-164 481
Msa1430560 AT4G30080.1 42.376 564 284 14 29 574 16 556 1.17e-121 375
Msa1430560 AT2G28350.2 46.389 457 209 10 28 460 6 450 1.04e-119 370
Msa1430560 AT2G28350.1 46.389 457 209 10 28 460 6 450 1.99e-119 370
Msa1430560 AT5G37020.2 37.101 407 211 8 29 426 19 389 1.04e-69 240
Msa1430560 AT5G37020.1 37.101 407 211 8 29 426 19 389 2.86e-69 240
Msa1430560 AT1G30330.3 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa1430560 AT1G30330.2 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa1430560 AT1G30330.1 38.250 400 203 7 21 412 12 375 1.47e-68 240
Msa1430560 AT2G33860.1 33.983 462 244 8 32 473 54 474 1.70e-68 234
Msa1430560 AT1G59750.4 37.692 390 198 10 32 414 22 373 6.35e-66 228
Msa1430560 AT1G59750.2 37.692 390 198 10 32 414 22 373 7.75e-66 228
Msa1430560 AT1G59750.1 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa1430560 AT1G59750.3 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa1430560 AT2G46530.1 35.714 406 208 9 25 419 14 377 2.95e-63 219
Msa1430560 AT4G23980.2 36.702 376 187 10 29 395 9 342 5.28e-63 219
Msa1430560 AT4G23980.1 36.702 376 187 10 29 395 9 342 7.36e-63 219
Msa1430560 AT2G46530.3 35.309 405 211 8 25 419 35 398 9.25e-63 218
Msa1430560 AT5G60450.2 34.670 424 222 9 25 432 34 418 3.23e-62 220
Msa1430560 AT5G60450.1 35.012 417 216 9 32 432 65 442 2.55e-61 218
Msa1430560 AT1G19850.2 37.468 395 188 12 29 410 40 388 3.09e-61 219
Msa1430560 AT1G19850.1 37.468 395 188 12 29 410 51 399 3.61e-61 219
Msa1430560 AT3G61830.1 34.726 383 206 6 29 406 22 365 1.62e-60 212
Msa1430560 AT5G62000.4 33.487 433 222 10 32 440 61 451 8.24e-60 214
Msa1430560 AT5G62000.2 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa1430560 AT5G62000.5 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa1430560 AT5G62000.3 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa1430560 AT5G62000.1 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa1430560 AT1G35520.1 31.481 486 257 15 24 478 19 459 1.10e-56 201
Msa1430560 AT1G34410.1 32.083 480 246 18 32 478 27 459 1.27e-55 199
Msa1430560 AT1G34310.1 34.761 397 204 11 32 419 27 377 3.56e-55 197
Msa1430560 AT1G35240.1 34.596 396 202 12 32 417 27 375 9.03e-55 196
Msa1430560 AT1G19220.1 45.161 217 106 3 29 236 20 232 4.89e-54 199
Msa1430560 AT5G20730.1 45.161 217 106 3 29 236 21 233 3.71e-53 197
Msa1430560 AT5G20730.2 45.161 217 106 3 29 236 21 233 4.06e-53 196
Msa1430560 AT5G20730.3 45.161 217 106 3 29 236 21 233 4.56e-53 196
Msa1430560 AT1G34390.1 33.753 397 206 12 32 419 27 375 2.35e-52 189
Msa1430560 AT2G33860.2 35.028 354 182 6 130 473 2 317 9.59e-52 184
Msa1430560 AT1G35540.1 33.165 395 213 11 32 419 27 377 2.91e-51 187
Msa1430560 AT5G37020.3 38.000 300 147 6 130 426 31 294 6.27e-51 187
Msa1430560 AT3G61830.2 34.545 330 177 5 77 406 24 314 1.13e-48 178
Msa1430560 AT1G34170.1 30.548 383 206 11 27 397 20 354 6.06e-45 167
Msa1430560 AT2G46530.2 35.786 299 144 8 127 419 34 290 1.61e-42 160
Msa1430560 ATMG00940.1 50.000 154 71 3 217 370 1 148 3.94e-39 141
Msa1430560 AT1G34170.2 28.982 383 186 11 27 397 20 328 8.69e-39 149
Msa1430560 AT1G34170.3 28.982 383 186 11 27 397 20 328 3.51e-38 149
Msa1430560 AT1G43950.1 38.725 204 111 7 32 229 27 222 1.13e-34 131
Msa1430560 AT3G61970.1 34.454 119 73 3 117 230 9 127 1.55e-12 69.3
Msa1430560 AT2G36080.3 37.273 110 65 2 125 230 33 142 2.71e-12 67.4
Msa1430560 AT2G36080.4 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa1430560 AT2G36080.2 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa1430560 AT2G36080.1 37.273 110 65 2 125 230 33 142 3.52e-12 67.4
Msa1430560 AT2G46870.1 33.071 127 79 2 124 245 29 154 2.04e-11 65.9
Msa1430560 AT4G01500.1 38.542 96 50 2 126 218 32 121 2.59e-11 65.9
Msa1430560 AT1G01030.1 33.613 119 73 2 116 229 42 159 2.68e-11 65.9
Msa1430560 AT1G01030.2 33.613 119 73 2 116 229 42 159 2.99e-11 65.9
Msa1430560 AT3G25730.1 34.314 102 63 2 130 227 183 284 8.78e-11 64.3

Find 210 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTTCAGAACTTTAT+TGG 0.164550 tig0026696:+55067 Msa1430560:intron
CCTCAACTGTTGAGGCTATT+TGG 0.202921 tig0026696:-54466 None:intergenic
CCTGTAACGTTTCAGCTATT+TGG 0.208521 tig0026696:+54284 Msa1430560:CDS
GAAACTAAGTATGTAATATT+TGG 0.249464 tig0026696:+55347 Msa1430560:three_prime_UTR
TCATTGTTCAGAACTTTATT+GGG 0.286084 tig0026696:+55068 Msa1430560:intron
CTGTTCCTGATCGTGGGGCT+TGG 0.289614 tig0026696:+52768 Msa1430560:CDS
GCGATAGCTCGCCAGAGTTT+GGG 0.291734 tig0026696:-51786 None:intergenic
TCTCAATTTGACCCCGCTAT+TGG 0.292420 tig0026696:+55436 Msa1430560:three_prime_UTR
AAAAGGACTAGAGGGGTATC+TGG 0.298766 tig0026696:+53906 Msa1430560:CDS
GGCGATAGCTCGCCAGAGTT+TGG 0.304479 tig0026696:-51787 None:intergenic
AAATCCCCTCCGTCAATTCT+AGG 0.308448 tig0026696:+51823 Msa1430560:CDS
TCCTCCGTTGGATTATAGTA+TGG 0.314074 tig0026696:+52163 Msa1430560:CDS
TCCGGTGGCGGTTGCGGAGG+CGG 0.344489 tig0026696:+52547 Msa1430560:CDS
CAGAGTAGTTTGCCTTCCTT+TGG 0.347823 tig0026696:+54215 Msa1430560:CDS
TTTGTTTGTCTTATTGAAAC+CGG 0.362279 tig0026696:+55317 Msa1430560:three_prime_UTR
TGATAACTTCCGTCTTTGTA+TGG 0.363524 tig0026696:+54094 Msa1430560:CDS
TTGGAAGTTTGCAACACTTC+AGG 0.367022 tig0026696:-53813 None:intergenic
TCCAGGACTACTTGGTTTCA+AGG 0.368052 tig0026696:+52728 Msa1430560:CDS
GGCGGCGGAAATGGCAGCAC+AGG 0.371956 tig0026696:+52565 Msa1430560:CDS
GGTTGCGGAGGCGGCGGAAA+TGG 0.372996 tig0026696:+52556 Msa1430560:CDS
TGGAGACTGATGATTCTTCC+AGG 0.375310 tig0026696:+52711 Msa1430560:CDS
CCAAATAGCTGAAACGTTAC+AGG 0.375667 tig0026696:-54284 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.375982 tig0026696:+54030 Msa1430560:CDS
ATACTTAGTTTCATTGTTCC+CGG 0.381218 tig0026696:-55336 None:intergenic
TTGGAGACGGTGGTAGTACT+TGG 0.385584 tig0026696:-51743 None:intergenic
TTTGGCAGCAACACAGTGCC+GGG 0.386977 tig0026696:+54125 Msa1430560:CDS
CTTTGTATGGGTAACTCCTT+TGG 0.387691 tig0026696:+54107 Msa1430560:CDS
TTGTTGATTACTGATGTTCA+TGG 0.389456 tig0026696:+52203 Msa1430560:CDS
GTTTCAAGGTGTAGTGTCTC+AGG 0.398107 tig0026696:+52742 Msa1430560:CDS
TTCTATATAAATCCAATAGC+GGG 0.403966 tig0026696:-55448 None:intergenic
CTGGCTCCCTGCATGCCAGC+AGG 0.411242 tig0026696:-54029 None:intergenic
AGGTTTCTGTTCCTGATCGT+GGG 0.413423 tig0026696:+52762 Msa1430560:CDS
GTGAACCCTGTGATAGAAAA+GGG 0.417152 tig0026696:-53954 None:intergenic
CGCCGGCATTTGTTGACCAC+CGG 0.418386 tig0026696:+52266 Msa1430560:CDS
AAATTGCTCGACAGGCTTGA+TGG 0.418640 tig0026696:+54437 Msa1430560:CDS
AGCTGAAACGTTACAGGCCC+GGG 0.423670 tig0026696:-54278 None:intergenic
ATGATTCTTCCAGGACTACT+TGG 0.424084 tig0026696:+52720 Msa1430560:CDS
AGAAGAGGTGAGAGATTGTT+CGG 0.425048 tig0026696:-51891 None:intergenic
GTTGTCTCCGGTGGCGGTTG+CGG 0.431234 tig0026696:+52541 Msa1430560:CDS
CTGCCAAGGGCTGACCCACT+TGG 0.431622 tig0026696:-53832 None:intergenic
CAAGTGGGTCAGCCCTTGGC+AGG 0.434174 tig0026696:+53833 Msa1430560:CDS
CAGGTTTCTGTTCCTGATCG+TGG 0.441155 tig0026696:+52761 Msa1430560:CDS
GGCAAACTACTCTGGCTCTC+TGG 0.444672 tig0026696:-54206 None:intergenic
AGTACTTGGCGGTTCATGAT+TGG 0.452130 tig0026696:-51729 None:intergenic
AAATGGCAGCACAGGGGATG+GGG 0.452139 tig0026696:+52573 Msa1430560:CDS
AACGCTAAGAAGCTTGTTGC+TGG 0.453003 tig0026696:+52305 Msa1430560:CDS
CTAACCAACCATTGTACTCT+AGG 0.453897 tig0026696:-55411 None:intergenic
AGTGAACCCTGTGATAGAAA+AGG 0.454541 tig0026696:-53955 None:intergenic
GCCGCCTCCGCAACCGCCAC+CGG 0.456465 tig0026696:-52548 None:intergenic
GGGGAAGTTGTCTCCGGTGG+CGG 0.456900 tig0026696:+52535 Msa1430560:CDS
GGTGGCGGTTGCGGAGGCGG+CGG 0.459780 tig0026696:+52550 Msa1430560:CDS
GAAATGGCAGCACAGGGGAT+GGG 0.460169 tig0026696:+52572 Msa1430560:CDS
GGAAATGGCAGCACAGGGGA+TGG 0.461216 tig0026696:+52571 Msa1430560:CDS
CAAAGGAAGGCAAACTACTC+TGG 0.464413 tig0026696:-54214 None:intergenic
TCCTGGAATGAGAATCAAAA+TGG 0.464829 tig0026696:+52685 Msa1430560:CDS
GGGGATTTGCACGGCAGCGC+CGG 0.466220 tig0026696:-51808 None:intergenic
GGTGGATGAAGAAGAGAAGC+TGG 0.468766 tig0026696:+52481 Msa1430560:CDS
AAAGGACTAGAGGGGTATCT+GGG 0.471476 tig0026696:+53907 Msa1430560:CDS
CGATCTGTGGAGTGAGAAGT+AGG 0.471915 tig0026696:+52459 Msa1430560:CDS
CCTCTCCAAGCCCCACGATC+AGG 0.472164 tig0026696:-52773 None:intergenic
CACAGGAGATGACAGCAGTA+AGG 0.472700 tig0026696:+54361 Msa1430560:CDS
ACCATTTGAACCACTTTCAA+CGG 0.473718 tig0026696:-54330 None:intergenic
ATCGGAGCAAACACCGCCAC+CGG 0.479208 tig0026696:-52417 None:intergenic
CCATTTGAACCACTTTCAAC+GGG 0.480213 tig0026696:-54329 None:intergenic
CTGATGTTCATGGTTTGACT+TGG 0.481505 tig0026696:+52213 Msa1430560:CDS
CTTTGGCAGCAACACAGTGC+CGG 0.482301 tig0026696:+54124 Msa1430560:CDS
CCACCGGCGCTACTCCGATT+CGG 0.482322 tig0026696:-52401 None:intergenic
CCCGTTGAAAGTGGTTCAAA+TGG 0.482554 tig0026696:+54329 Msa1430560:CDS
CTTACTCAAAATTGCTCGAC+AGG 0.482573 tig0026696:+54429 Msa1430560:CDS
ATTGTTTCTGATAGATTACA+TGG 0.486179 tig0026696:+53784 Msa1430560:intron
AATCCCCTCCGTCAATTCTA+GGG 0.486899 tig0026696:+51824 Msa1430560:CDS
CGGGAAGGGGAAGTTGTCTC+CGG 0.490275 tig0026696:+52529 Msa1430560:CDS
ACCTTGAAACCAAGTAGTCC+TGG 0.491621 tig0026696:-52729 None:intergenic
GAGGAAATGAACGGCGGAGA+CGG 0.491674 tig0026696:-51940 None:intergenic
GAAGTTATCACCTGGAAAGT+TGG 0.498091 tig0026696:-54081 None:intergenic
TCTCATGGCATGAAGTTCAA+TGG 0.498753 tig0026696:+55110 Msa1430560:three_prime_UTR
AGAGAAGCTGGTGGATGAGA+AGG 0.506899 tig0026696:+52493 Msa1430560:CDS
CTTCCAAGTGGGTCAGCCCT+TGG 0.507741 tig0026696:+53829 Msa1430560:CDS
GGGTTCACTAATTCAACAAT+GGG 0.507819 tig0026696:+53969 Msa1430560:CDS
ATGCACATAAGTAGCTGTAC+AGG 0.510612 tig0026696:+54520 Msa1430560:three_prime_UTR
CTTGGTCCATGTGACCTTGA+GGG 0.511485 tig0026696:-51857 None:intergenic
AATCGGAGTAGCGCCGGTGG+CGG 0.511889 tig0026696:+52404 Msa1430560:CDS
ACAGGAGATGACAGCAGTAA+GGG 0.514015 tig0026696:+54362 Msa1430560:CDS
ATGAGTGTTACTTGGTGTCC+TGG 0.519012 tig0026696:+52668 Msa1430560:CDS
GAGACGGTGGTAGTACTTGG+CGG 0.520685 tig0026696:-51740 None:intergenic
CTGTTCGATTAGTTCCGAAT+CGG 0.520734 tig0026696:+52387 Msa1430560:CDS
TAGCTGAAACGTTACAGGCC+CGG 0.521167 tig0026696:-54279 None:intergenic
TAGGGACGAGAGAGAAGAAG+AGG 0.523309 tig0026696:-51906 None:intergenic
CTGTTGAGGCTATTTGGCAC+TGG 0.523716 tig0026696:-54460 None:intergenic
GAAAGAAGTTCCACCTGCCA+AGG 0.525099 tig0026696:-53846 None:intergenic
GTGGGTCAGCCCTTGGCAGG+TGG 0.528173 tig0026696:+53836 Msa1430560:CDS
GCGGCGGAAATGGCAGCACA+GGG 0.528509 tig0026696:+52566 Msa1430560:CDS
GTGGTGTATTATCCGAGAGC+GGG 0.529625 tig0026696:+52602 Msa1430560:CDS
TCTGATGCGAACAACGGTGG+TGG 0.529876 tig0026696:+52104 Msa1430560:CDS
GTCTCCGGTGGCGGTTGCGG+AGG 0.531959 tig0026696:+52544 Msa1430560:CDS
CTACTTCCCTCAAGGTCACA+TGG 0.532844 tig0026696:+51851 Msa1430560:CDS
AACCGGTGGTCAACAAATGC+CGG 0.533689 tig0026696:-52268 None:intergenic
AACTGCAACTCAATGAAACC+CGG 0.535247 tig0026696:+54260 Msa1430560:CDS
ACAGAACAGCCCGTTGAAAG+TGG 0.538177 tig0026696:+54320 Msa1430560:CDS
AACGGAAAATAGATCATGCC+TGG 0.538278 tig0026696:-54048 None:intergenic
GAGACGGAGCAGAGAATGTA+GGG 0.539234 tig0026696:-51924 None:intergenic
GATAACTTCCGTCTTTGTAT+GGG 0.539535 tig0026696:+54095 Msa1430560:CDS
GTAGTAAACCCTAGAATTGA+CGG 0.541390 tig0026696:-51832 None:intergenic
GAAAGCGGAGGTTGTGGATG+CGG 0.543290 tig0026696:+52643 Msa1430560:CDS
CCCCATTGAAAAGGACTAGA+GGG 0.543634 tig0026696:+53898 Msa1430560:CDS
TGTTGACCACCGGTTGGAGT+AGG 0.544509 tig0026696:+52276 Msa1430560:CDS
ATAAGGACACTCACTTCAGA+TGG 0.545289 tig0026696:-55161 None:intergenic
TGATGTTCATGGTTTGACTT+GGG 0.545373 tig0026696:+52214 Msa1430560:CDS
AAACTCTGGCGAGCTATCGC+CGG 0.546085 tig0026696:+51789 Msa1430560:CDS
AAATCCGACCACCCCGCTCT+CGG 0.548356 tig0026696:-52614 None:intergenic
TTATCCGAGAGCGGGGTGGT+CGG 0.550098 tig0026696:+52610 Msa1430560:CDS
ATGCGGCGATGAGTGTTACT+TGG 0.550397 tig0026696:+52660 Msa1430560:CDS
CCACACTCAACCCCAAACTC+TGG 0.551845 tig0026696:+51775 Msa1430560:CDS
TGTTCGGAAGTGAAGTAGCT+TGG 0.552094 tig0026696:-51875 None:intergenic
GGAGACGGAGCAGAGAATGT+AGG 0.553295 tig0026696:-51925 None:intergenic
GTTCACAAACCTACTCCAAC+CGG 0.553748 tig0026696:-52285 None:intergenic
AGGGTTTACTACTTCCCTCA+AGG 0.555346 tig0026696:+51843 Msa1430560:CDS
CGGCACTGTGTTGCTGCCAA+AGG 0.556216 tig0026696:-54123 None:intergenic
GGCATTTGTTGACCACCGGT+TGG 0.557182 tig0026696:+52270 Msa1430560:CDS
TTGTTTGTCTTATTGAAACC+GGG 0.560405 tig0026696:+55318 Msa1430560:three_prime_UTR
CCGTCGTCAGCTTCAATCAC+CGG 0.562074 tig0026696:-52044 None:intergenic
TGTGTTGAAAGCGGAGGTTG+TGG 0.562873 tig0026696:+52637 Msa1430560:CDS
ATCAACAAATTCTGCAACGG+AGG 0.565435 tig0026696:-52188 None:intergenic
CAAAGACGGAAGTTATCACC+TGG 0.565893 tig0026696:-54089 None:intergenic
CCTGATCGTGGGGCTTGGAG+AGG 0.567198 tig0026696:+52773 Msa1430560:CDS
AATGCCGGCGCGGCGTTCCA+CGG 0.569609 tig0026696:-52253 None:intergenic
AGGCATTAACAACCCTCTTG+AGG 0.570796 tig0026696:+54400 Msa1430560:CDS
TTTACCGTGGAACGCCGCGC+CGG 0.571717 tig0026696:+52249 Msa1430560:CDS
AGATTGTGTCTTCCGATCTG+TGG 0.572758 tig0026696:+52446 Msa1430560:CDS
ATTTCCTAGAGTACAATGGT+TGG 0.573247 tig0026696:+55407 Msa1430560:three_prime_UTR
ACTAGAGGTGCAATGTTCAT+CGG 0.573435 tig0026696:+52353 Msa1430560:CDS
GGGCTTGGAGAGGTTCACCT+TGG 0.573691 tig0026696:+52783 Msa1430560:CDS
ACAAAATCTGTGCCAAAGGA+AGG 0.573965 tig0026696:-54227 None:intergenic
AGGTACTTCTCCACGCAGAC+AGG 0.574972 tig0026696:+55261 Msa1430560:intron
GGAAAGGGCGTATGAAGGGA+AGG 0.577013 tig0026696:-53876 None:intergenic
ACAGGGGATGGGGTTTGAAG+TGG 0.577463 tig0026696:+52583 Msa1430560:CDS
CCACCGTTGTTCGCATCAGA+AGG 0.582707 tig0026696:-52101 None:intergenic
ATAAGAAGTAACGGAATCGA+AGG 0.582751 tig0026696:-51675 None:intergenic
GTTCCGAATCGGAGTAGCGC+CGG 0.582911 tig0026696:+52398 Msa1430560:CDS
CCAGAGTTTGGGGTTGAGTG+TGG 0.583941 tig0026696:-51775 None:intergenic
TCAAATGGTACTGTTAGCAC+AGG 0.585129 tig0026696:+54344 Msa1430560:CDS
AACGTTGGCAGTTCTCACTC+TGG 0.586514 tig0026696:+54173 Msa1430560:CDS
GCTTGGTCCATGTGACCTTG+AGG 0.587306 tig0026696:-51858 None:intergenic
TTGAAGCTGACGACGGTGAG+AGG 0.587325 tig0026696:+52051 Msa1430560:CDS
CGATAGCTCGCCAGAGTTTG+GGG 0.589326 tig0026696:-51785 None:intergenic
GTATCTGGGGTGTTAACTGA+TGG 0.592887 tig0026696:+53921 Msa1430560:CDS
GCTTCAATCACCGGAATCCG+TGG 0.594157 tig0026696:-52035 None:intergenic
TTTCTATATAAATCCAATAG+CGG 0.598851 tig0026696:-55449 None:intergenic
CCGAACAAAATCTGTGCCAA+AGG 0.598966 tig0026696:-54231 None:intergenic
CCAAATAGCCTCAACAGTTG+AGG 0.599347 tig0026696:+54466 Msa1430560:CDS
AAGCTTAGCGAAAACCTCAT+CGG 0.601270 tig0026696:-51976 None:intergenic
CCGAATCGGAGTAGCGCCGG+TGG 0.601878 tig0026696:+52401 Msa1430560:CDS
AATGAGAATCAAAATGGCTG+TGG 0.607672 tig0026696:+52691 Msa1430560:CDS
GGTTTCTGTTCCTGATCGTG+GGG 0.610340 tig0026696:+52763 Msa1430560:CDS
GGTTGAATGAAAATGAGTGA+GGG 0.612055 tig0026696:-51708 None:intergenic
AGGGTTCACTAATTCAACAA+TGG 0.612370 tig0026696:+53968 Msa1430560:CDS
ATCGAATCAGCACAAAACCT+CGG 0.612548 tig0026696:-52137 None:intergenic
GTAATCAACAAATTCTGCAA+CGG 0.612614 tig0026696:-52191 None:intergenic
GAGTAAGTCGAATCCTCAAG+AGG 0.613064 tig0026696:-54413 None:intergenic
CATACTGCAAGGTCAAAAGA+TGG 0.615276 tig0026696:-55285 None:intergenic
AAGGACTAGAGGGGTATCTG+GGG 0.618552 tig0026696:+53908 Msa1430560:CDS
CTACTTCTCACTCCACAGAT+CGG 0.620895 tig0026696:-52458 None:intergenic
CATTGTTCAGAACTTTATTG+GGG 0.623018 tig0026696:+55069 Msa1430560:intron
ACTGCAACTCAATGAAACCC+GGG 0.624047 tig0026696:+54261 Msa1430560:CDS
TAATATTTCCTAGAGTACAA+TGG 0.626801 tig0026696:+55403 Msa1430560:three_prime_UTR
CGGATCGGCGAGGAAATGAA+CGG 0.627023 tig0026696:-51949 None:intergenic
TTGGCAGCAACACAGTGCCG+GGG 0.627502 tig0026696:+54126 Msa1430560:CDS
TTAACAGTGAAATCATTCAA+CGG 0.636083 tig0026696:-52008 None:intergenic
ATTGACGGAGGGGATTTGCA+CGG 0.638032 tig0026696:-51817 None:intergenic
AAGGGCTGCAACGAAACTGA+AGG 0.639246 tig0026696:+54380 Msa1430560:CDS
TAAGGACACTCACTTCAGAT+GGG 0.641287 tig0026696:-55160 None:intergenic
GGATGAAGAAGAGAAGCTGG+TGG 0.642912 tig0026696:+52484 Msa1430560:CDS
ATAGCACGCCTCAACTGTTG+AGG 0.645577 tig0026696:-54474 None:intergenic
AGTAAGTCGAATCCTCAAGA+GGG 0.645578 tig0026696:-54412 None:intergenic
TCTATATAAATCCAATAGCG+GGG 0.648813 tig0026696:-55447 None:intergenic
AGGAGTTACCCATACAAAGA+CGG 0.649086 tig0026696:-54103 None:intergenic
TGGTTGAATGAAAATGAGTG+AGG 0.649701 tig0026696:-51709 None:intergenic
AAAGTACTGTAACTCAACAA+TGG 0.650302 tig0026696:-54005 None:intergenic
GATCTGTGGAGTGAGAAGTA+GGG 0.650471 tig0026696:+52460 Msa1430560:CDS
CCTTCTGATGCGAACAACGG+TGG 0.652015 tig0026696:+52101 Msa1430560:CDS
TTGTTTCTGATAGATTACAT+GGG 0.652931 tig0026696:+53785 Msa1430560:intron
AAAGAAGTTCCACCTGCCAA+GGG 0.653496 tig0026696:-53845 None:intergenic
GAGTTTCGTCACATTTACCG+TGG 0.654474 tig0026696:+52236 Msa1430560:CDS
GAAGGGGAAGTTGTCTCCGG+TGG 0.654859 tig0026696:+52532 Msa1430560:CDS
AAAAGATGGTCCTGTCTGCG+TGG 0.657451 tig0026696:-55271 None:intergenic
AAAGAAAACAGCATACTGCA+AGG 0.660360 tig0026696:-55296 None:intergenic
TAAACCCTAGAATTGACGGA+GGG 0.662879 tig0026696:-51828 None:intergenic
TGGTGTATTATCCGAGAGCG+GGG 0.665380 tig0026696:+52603 Msa1430560:CDS
GGGGTGTTAACTGATGGAGA+TGG 0.666346 tig0026696:+53927 Msa1430560:CDS
CGCCGATCCGAAAACCGATG+AGG 0.668414 tig0026696:+51962 Msa1430560:CDS
GTGGTCAACAAATGCCGGCG+CGG 0.669526 tig0026696:-52263 None:intergenic
ACTCCTTCTGATGCGAACAA+CGG 0.674390 tig0026696:+52098 Msa1430560:CDS
AAGACACAATCTCGACACAT+CGG 0.674917 tig0026696:-52435 None:intergenic
CACAAACCTACTCCAACCGG+TGG 0.675418 tig0026696:-52282 None:intergenic
CGGCGGAAATGGCAGCACAG+GGG 0.678622 tig0026696:+52567 Msa1430560:CDS
TGAACCCTGTGATAGAAAAG+GGG 0.678709 tig0026696:-53953 None:intergenic
AGTGTTGCAAACTTCCAAGT+GGG 0.678749 tig0026696:+53818 Msa1430560:CDS
CTGTGGAGTGAGAAGTAGGG+TGG 0.681702 tig0026696:+52463 Msa1430560:CDS
CCCATTGAAAAGGACTAGAG+GGG 0.682404 tig0026696:+53899 Msa1430560:CDS
TGTATTATCCGAGAGCGGGG+TGG 0.682628 tig0026696:+52606 Msa1430560:CDS
AGTGGTGTATTATCCGAGAG+CGG 0.685012 tig0026696:+52601 Msa1430560:CDS
AAGTGTTGCAAACTTCCAAG+TGG 0.685015 tig0026696:+53817 Msa1430560:CDS
AAACCCTAGAATTGACGGAG+GGG 0.688106 tig0026696:-51827 None:intergenic
GGATCCATACTATAATCCAA+CGG 0.690465 tig0026696:-52167 None:intergenic
GAACTAATCGAACAGCACGA+CGG 0.693501 tig0026696:-52379 None:intergenic
CATACATGAAGCATACGCCA+AGG 0.694470 tig0026696:-52800 None:intergenic
ATCGGCGAGGAAATGAACGG+CGG 0.707383 tig0026696:-51946 None:intergenic
CCGGTGATTGAAGCTGACGA+CGG 0.709175 tig0026696:+52044 Msa1430560:CDS
TCCATACTATAATCCAACGG+AGG 0.710511 tig0026696:-52164 None:intergenic
GTAAACCCTAGAATTGACGG+AGG 0.732924 tig0026696:-51829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAATATATATTTGAT+TGG - tig0026696:53019-53038 None:intergenic 10.0%
!!! ATAATTTGATCATATTGATT+AGG + tig0026696:52895-52914 Msa1430560:intron 15.0%
!! AAATAGATTAAATATGAGTA+TGG + tig0026696:53047-53066 Msa1430560:intron 15.0%
!!! CTATCTAAAATAACTAAAAT+TGG + tig0026696:53755-53774 Msa1430560:intron 15.0%
!! AGTATTCTTCATAAAAACAA+CGG - tig0026696:52336-52355 None:intergenic 20.0%
!! AATAAAGATTCAAAAGAAAG+AGG - tig0026696:52829-52848 None:intergenic 20.0%
!! TGTGCGTTATATAATAATTA+TGG + tig0026696:52863-52882 Msa1430560:intron 20.0%
!!! TAAGTAAAAATCATTTTGCA+AGG + tig0026696:53094-53113 Msa1430560:intron 20.0%
!! AATCTATCAGAAACAATAAA+TGG - tig0026696:53781-53800 None:intergenic 20.0%
!!! TTTTTTCCTTGAGTTTTATA+TGG + tig0026696:54780-54799 Msa1430560:intron 20.0%
!! GTCTAATACAAGAAAATAAA+TGG + tig0026696:55035-55054 Msa1430560:intron 20.0%
!! AAGTTCAATGGATAAAAAAA+AGG + tig0026696:55122-55141 Msa1430560:three_prime_UTR 20.0%
!! AGTTCAATGGATAAAAAAAA+GGG + tig0026696:55123-55142 Msa1430560:three_prime_UTR 20.0%
!! ATAAGATGTTCAACAATATA+AGG - tig0026696:55181-55200 None:intergenic 20.0%
!!! ATTAATTTTGTTGCTTACTT+TGG + tig0026696:55225-55244 Msa1430560:intron 20.0%
!!! TTAATTTTGTTGCTTACTTT+GGG + tig0026696:55226-55245 Msa1430560:intron 20.0%
!! GAAACTAAGTATGTAATATT+TGG + tig0026696:55347-55366 Msa1430560:three_prime_UTR 20.0%
!! TTTCTATATAAATCCAATAG+CGG - tig0026696:55452-55471 None:intergenic 20.0%
!! TTTTCGAACATAAGAAGTAA+CGG - tig0026696:51687-51706 None:intergenic 25.0%
! TTAACAGTGAAATCATTCAA+CGG - tig0026696:52011-52030 None:intergenic 25.0%
!! ATTTCACTGTTAATTTTCCA+CGG + tig0026696:52018-52037 Msa1430560:CDS 25.0%
!! GTTTTTATGAAGAATACTAG+AGG + tig0026696:52338-52357 Msa1430560:CDS 25.0%
!! AAACATGCATTTTATCTAGT+TGG + tig0026696:52918-52937 Msa1430560:intron 25.0%
!!! ACTTAATGTTGCTTTCAAAA+TGG + tig0026696:52986-53005 Msa1430560:intron 25.0%
! AGTGTTTATCATCTGTTTAA+AGG + tig0026696:53199-53218 Msa1430560:intron 25.0%
! CAACAAATCAAATGTTAACA+TGG - tig0026696:53240-53259 None:intergenic 25.0%
! TTTGTTGAATTCAGGAAATT+TGG + tig0026696:53321-53340 Msa1430560:intron 25.0%
!! TAGAACATAGAAGTGATTTT+AGG + tig0026696:53357-53376 Msa1430560:intron 25.0%
!! GTAAAATTTTGTGAAACCAA+TGG + tig0026696:53384-53403 Msa1430560:intron 25.0%
! AAAAAGGAAACGAAAAAACA+AGG - tig0026696:53480-53499 None:intergenic 25.0%
!! TGATTTTTCTATATCTGACT+TGG + tig0026696:53609-53628 Msa1430560:intron 25.0%
!!! ATTGTTTCTGATAGATTACA+TGG + tig0026696:53784-53803 Msa1430560:intron 25.0%
!!! TTGTTTCTGATAGATTACAT+GGG + tig0026696:53785-53804 Msa1430560:intron 25.0%
! AAAGTTGGAAAAACTTGAAA+CGG - tig0026696:54069-54088 None:intergenic 25.0%
!!! AGTGGATTAATTGATAACAT+AGG + tig0026696:54752-54771 Msa1430560:intron 25.0%
!! ATTAATTGATAACATAGGTC+TGG + tig0026696:54757-54776 Msa1430560:intron 25.0%
! AAAAGTAAATGAAAATGCAG+AGG + tig0026696:54916-54935 Msa1430560:intron 25.0%
! AAAGTAAATGAAAATGCAGA+GGG + tig0026696:54917-54936 Msa1430560:intron 25.0%
!!! AGTATTGATTTTCTGTTATG+GGG - tig0026696:54959-54978 None:intergenic 25.0%
!!! GAGTATTGATTTTCTGTTAT+GGG - tig0026696:54960-54979 None:intergenic 25.0%
! TTCATTGTTCAGAACTTTAT+TGG + tig0026696:55067-55086 Msa1430560:intron 25.0%
! TCATTGTTCAGAACTTTATT+GGG + tig0026696:55068-55087 Msa1430560:intron 25.0%
! GTTCAATGGATAAAAAAAAG+GGG + tig0026696:55124-55143 Msa1430560:three_prime_UTR 25.0%
! GCAACAAAATTAATTGAACA+TGG - tig0026696:55219-55238 None:intergenic 25.0%
!! TTTGTTTGTCTTATTGAAAC+CGG + tig0026696:55317-55336 Msa1430560:three_prime_UTR 25.0%
! TAATATTTCCTAGAGTACAA+TGG + tig0026696:55403-55422 Msa1430560:three_prime_UTR 25.0%
! TTCTATATAAATCCAATAGC+GGG - tig0026696:55451-55470 None:intergenic 25.0%
GTAATCAACAAATTCTGCAA+CGG - tig0026696:52194-52213 None:intergenic 30.0%
! TTGTTGATTACTGATGTTCA+TGG + tig0026696:52203-52222 Msa1430560:CDS 30.0%
AATGCTATATTTGCATGAAG+AGG + tig0026696:53148-53167 Msa1430560:intron 30.0%
TTGAATTCAGGAAATTTGGT+TGG + tig0026696:53325-53344 Msa1430560:intron 30.0%
TGAATTCAGGAAATTTGGTT+GGG + tig0026696:53326-53345 Msa1430560:intron 30.0%
AAACCAATGGATACCATTAT+TGG + tig0026696:53397-53416 Msa1430560:intron 30.0%
AACCAATGGATACCATTATT+GGG + tig0026696:53398-53417 Msa1430560:intron 30.0%
AATCTCATAAGTCCCAATAA+TGG - tig0026696:53413-53432 None:intergenic 30.0%
!!! CGTTTCCTTTTTTTGAAATC+TGG + tig0026696:53488-53507 Msa1430560:intron 30.0%
GCAATCCAGATTTCAAAAAA+AGG - tig0026696:53496-53515 None:intergenic 30.0%
AGACATAAGAAATCAAAAGC+AGG - tig0026696:53646-53665 None:intergenic 30.0%
!! GATTCTTCGTATCATTTTTG+TGG + tig0026696:53666-53685 Msa1430560:intron 30.0%
!! AAAGTACTGTAACTCAACAA+TGG - tig0026696:54008-54027 None:intergenic 30.0%
!! GTTGAAAAAGATTTTAACCC+CGG - tig0026696:54146-54165 None:intergenic 30.0%
!!! GGGGTTAAAATCTTTTTCAA+CGG + tig0026696:54145-54164 Msa1430560:CDS 30.0%
AGTGAATCAAAGTTCTCAAT+AGG + tig0026696:54557-54576 Msa1430560:intron 30.0%
GTGAATCAAAGTTCTCAATA+GGG + tig0026696:54558-54577 Msa1430560:intron 30.0%
!!! GGTATTTTTAGCTGTCTTAT+TGG + tig0026696:54659-54678 Msa1430560:intron 30.0%
GTTTGTTCTAATCAAGTGAT+GGG + tig0026696:54701-54720 Msa1430560:intron 30.0%
TCATGACCATATAAAACTCA+AGG - tig0026696:54789-54808 None:intergenic 30.0%
! CTTTCTGTCAATATTTTCCT+AGG - tig0026696:54862-54881 None:intergenic 30.0%
TTGACAGAAAGTAGAGAAAA+AGG + tig0026696:54871-54890 Msa1430560:intron 30.0%
TGACAGAAAGTAGAGAAAAA+GGG + tig0026696:54872-54891 Msa1430560:intron 30.0%
!!! CGAGTATTGATTTTCTGTTA+TGG - tig0026696:54961-54980 None:intergenic 30.0%
ATGAGTATTCTCATGTGAAT+AGG + tig0026696:54993-55012 Msa1430560:intron 30.0%
CATTGTTCAGAACTTTATTG+GGG + tig0026696:55069-55088 Msa1430560:intron 30.0%
! TTGTTTGTCTTATTGAAACC+GGG + tig0026696:55318-55337 Msa1430560:three_prime_UTR 30.0%
ATACTTAGTTTCATTGTTCC+CGG - tig0026696:55339-55358 None:intergenic 30.0%
TCTATATAAATCCAATAGCG+GGG - tig0026696:55450-55469 None:intergenic 30.0%
! ATAAGAAGTAACGGAATCGA+AGG - tig0026696:51678-51697 None:intergenic 35.0%
GGTTGAATGAAAATGAGTGA+GGG - tig0026696:51711-51730 None:intergenic 35.0%
TGGTTGAATGAAAATGAGTG+AGG - tig0026696:51712-51731 None:intergenic 35.0%
GTAGTAAACCCTAGAATTGA+CGG - tig0026696:51835-51854 None:intergenic 35.0%
! TGTTAATTTTCCACGGATTC+CGG + tig0026696:52025-52044 Msa1430560:CDS 35.0%
GGATCCATACTATAATCCAA+CGG - tig0026696:52170-52189 None:intergenic 35.0%
! TGATGTTCATGGTTTGACTT+GGG + tig0026696:52214-52233 Msa1430560:CDS 35.0%
TCCTGGAATGAGAATCAAAA+TGG + tig0026696:52685-52704 Msa1430560:CDS 35.0%
AATGAGAATCAAAATGGCTG+TGG + tig0026696:52691-52710 Msa1430560:CDS 35.0%
! TTTGACTGAGAATGCTTTTG+TGG + tig0026696:52948-52967 Msa1430560:intron 35.0%
! GTTGCTTTCAAAATGGAATG+TGG + tig0026696:52993-53012 Msa1430560:intron 35.0%
TTTGCATGAAGAGGTTGAAA+TGG + tig0026696:53157-53176 Msa1430560:intron 35.0%
TTGCATGAAGAGGTTGAAAT+GGG + tig0026696:53158-53177 Msa1430560:intron 35.0%
TTGTTCAGTTGCTTCTGTTA+CGG + tig0026696:53257-53276 Msa1430560:intron 35.0%
TTCCTGAATTCAACAAAGCA+GGG - tig0026696:53318-53337 None:intergenic 35.0%
TTTCCTGAATTCAACAAAGC+AGG - tig0026696:53319-53338 None:intergenic 35.0%
AGGAAACGAAAAAACAAGGA+AGG - tig0026696:53476-53495 None:intergenic 35.0%
AGGGTTCACTAATTCAACAA+TGG + tig0026696:53968-53987 Msa1430560:CDS 35.0%
GGGTTCACTAATTCAACAAT+GGG + tig0026696:53969-53988 Msa1430560:CDS 35.0%
! TCAAGTTTTTCCAACTTTCC+AGG + tig0026696:54071-54090 Msa1430560:CDS 35.0%
TGATAACTTCCGTCTTTGTA+TGG + tig0026696:54094-54113 Msa1430560:CDS 35.0%
GATAACTTCCGTCTTTGTAT+GGG + tig0026696:54095-54114 Msa1430560:CDS 35.0%
! TTTTCAACGGATCTAAACGT+TGG + tig0026696:54158-54177 Msa1430560:CDS 35.0%
ACCATTTGAACCACTTTCAA+CGG - tig0026696:54333-54352 None:intergenic 35.0%
! AGTAGTTTGTGTTAGCTCAA+TGG + tig0026696:54638-54657 Msa1430560:intron 35.0%
! TAGCTGTCTTATTGGAATGT+TGG + tig0026696:54667-54686 Msa1430560:intron 35.0%
! TTGGAATGTTGGCATGTTTT+AGG + tig0026696:54678-54697 Msa1430560:intron 35.0%
! TGGAATGTTGGCATGTTTTA+GGG + tig0026696:54679-54698 Msa1430560:intron 35.0%
! GGTTTGTTCTAATCAAGTGA+TGG + tig0026696:54700-54719 Msa1430560:intron 35.0%
TGTGCATATATTCTCACAAG+TGG + tig0026696:54734-54753 Msa1430560:intron 35.0%
TGATATATGATGCCTGTTTC+TGG + tig0026696:54806-54825 Msa1430560:intron 35.0%
AAAAAAGATGCAGCTTCTCA+TGG + tig0026696:55095-55114 Msa1430560:three_prime_UTR 35.0%
AAAGAAAACAGCATACTGCA+AGG - tig0026696:55299-55318 None:intergenic 35.0%
ATTTCCTAGAGTACAATGGT+TGG + tig0026696:55407-55426 Msa1430560:three_prime_UTR 35.0%
!!! TTGAGTGTGGTTGCGTTTTT+TGG - tig0026696:51765-51784 None:intergenic 40.0%
TAAACCCTAGAATTGACGGA+GGG - tig0026696:51831-51850 None:intergenic 40.0%
AGAAGAGGTGAGAGATTGTT+CGG - tig0026696:51894-51913 None:intergenic 40.0%
AAGCTTAGCGAAAACCTCAT+CGG - tig0026696:51979-51998 None:intergenic 40.0%
ATCGAATCAGCACAAAACCT+CGG - tig0026696:52140-52159 None:intergenic 40.0%
! TGATTCGATTTTTCCTCCGT+TGG + tig0026696:52151-52170 Msa1430560:CDS 40.0%
TCCTCCGTTGGATTATAGTA+TGG + tig0026696:52163-52182 Msa1430560:CDS 40.0%
TCCATACTATAATCCAACGG+AGG - tig0026696:52167-52186 None:intergenic 40.0%
ATCAACAAATTCTGCAACGG+AGG - tig0026696:52191-52210 None:intergenic 40.0%
CTGATGTTCATGGTTTGACT+TGG + tig0026696:52213-52232 Msa1430560:CDS 40.0%
! ACTAGAGGTGCAATGTTCAT+CGG + tig0026696:52353-52372 Msa1430560:CDS 40.0%
! CTGTTCGATTAGTTCCGAAT+CGG + tig0026696:52387-52406 Msa1430560:CDS 40.0%
AAGACACAATCTCGACACAT+CGG - tig0026696:52438-52457 None:intergenic 40.0%
! GTCGGATTTTGTGTTGAAAG+CGG + tig0026696:52628-52647 Msa1430560:CDS 40.0%
!!! GCCATTTTGATTCTCATTCC+AGG - tig0026696:52689-52708 None:intergenic 40.0%
ATGATTCTTCCAGGACTACT+TGG + tig0026696:52720-52739 Msa1430560:CDS 40.0%
TGAAGAGGTTGAAATGGGTA+AGG + tig0026696:53163-53182 Msa1430560:intron 40.0%
! TACCCTGCTTTGTTGAATTC+AGG + tig0026696:53313-53332 Msa1430560:intron 40.0%
TTCAGGAAATTTGGTTGGGT+TGG + tig0026696:53330-53349 Msa1430560:intron 40.0%
GTCCCAATAATGGTATCCAT+TGG - tig0026696:53403-53422 None:intergenic 40.0%
TTGGAAGTTTGCAACACTTC+AGG - tig0026696:53816-53835 None:intergenic 40.0%
! AAGTGTTGCAAACTTCCAAG+TGG + tig0026696:53817-53836 Msa1430560:CDS 40.0%
AGTGTTGCAAACTTCCAAGT+GGG + tig0026696:53818-53837 Msa1430560:CDS 40.0%
TGAACCCTGTGATAGAAAAG+GGG - tig0026696:53956-53975 None:intergenic 40.0%
GTGAACCCTGTGATAGAAAA+GGG - tig0026696:53957-53976 None:intergenic 40.0%
AGTGAACCCTGTGATAGAAA+AGG - tig0026696:53958-53977 None:intergenic 40.0%
! AGTTACAGTACTTTTCCTGC+TGG + tig0026696:54014-54033 Msa1430560:CDS 40.0%
AACGGAAAATAGATCATGCC+TGG - tig0026696:54051-54070 None:intergenic 40.0%
GAAGTTATCACCTGGAAAGT+TGG - tig0026696:54084-54103 None:intergenic 40.0%
AGGAGTTACCCATACAAAGA+CGG - tig0026696:54106-54125 None:intergenic 40.0%
CTTTGTATGGGTAACTCCTT+TGG + tig0026696:54107-54126 Msa1430560:CDS 40.0%
ACAAAATCTGTGCCAAAGGA+AGG - tig0026696:54230-54249 None:intergenic 40.0%
! CCTTTGGCACAGATTTTGTT+CGG + tig0026696:54231-54250 Msa1430560:CDS 40.0%
AACTGCAACTCAATGAAACC+CGG + tig0026696:54260-54279 Msa1430560:CDS 40.0%
CCAAATAGCTGAAACGTTAC+AGG - tig0026696:54287-54306 None:intergenic 40.0%
CCTGTAACGTTTCAGCTATT+TGG + tig0026696:54284-54303 Msa1430560:CDS 40.0%
CCATTTGAACCACTTTCAAC+GGG - tig0026696:54332-54351 None:intergenic 40.0%
TCAAATGGTACTGTTAGCAC+AGG + tig0026696:54344-54363 Msa1430560:CDS 40.0%
AGTAAGTCGAATCCTCAAGA+GGG - tig0026696:54415-54434 None:intergenic 40.0%
CTTACTCAAAATTGCTCGAC+AGG + tig0026696:54429-54448 Msa1430560:CDS 40.0%
ATGCACATAAGTAGCTGTAC+AGG + tig0026696:54520-54539 Msa1430560:three_prime_UTR 40.0%
!!! TTTTGGTTTGCACCAGAAAC+AGG - tig0026696:54821-54840 None:intergenic 40.0%
!! GTGTTTTTGCTCTGTGGTTT+TGG - tig0026696:54838-54857 None:intergenic 40.0%
! TTTTCTGTTATGGGGTAGCA+GGG - tig0026696:54951-54970 None:intergenic 40.0%
! ATTTTCTGTTATGGGGTAGC+AGG - tig0026696:54952-54971 None:intergenic 40.0%
TCTCATGGCATGAAGTTCAA+TGG + tig0026696:55110-55129 Msa1430560:three_prime_UTR 40.0%
TAAGGACACTCACTTCAGAT+GGG - tig0026696:55163-55182 None:intergenic 40.0%
ATAAGGACACTCACTTCAGA+TGG - tig0026696:55164-55183 None:intergenic 40.0%
CATACTGCAAGGTCAAAAGA+TGG - tig0026696:55288-55307 None:intergenic 40.0%
CTAACCAACCATTGTACTCT+AGG - tig0026696:55414-55433 None:intergenic 40.0%
AGTACTTGGCGGTTCATGAT+TGG - tig0026696:51732-51751 None:intergenic 45.0%
!!! GTGGTTGCGTTTTTTGGAGA+CGG - tig0026696:51759-51778 None:intergenic 45.0%
AAATCCCCTCCGTCAATTCT+AGG + tig0026696:51823-51842 Msa1430560:CDS 45.0%
AATCCCCTCCGTCAATTCTA+GGG + tig0026696:51824-51843 Msa1430560:CDS 45.0%
AAACCCTAGAATTGACGGAG+GGG - tig0026696:51830-51849 None:intergenic 45.0%
GTAAACCCTAGAATTGACGG+AGG - tig0026696:51832-51851 None:intergenic 45.0%
AGGGTTTACTACTTCCCTCA+AGG + tig0026696:51843-51862 Msa1430560:CDS 45.0%
TGTTCGGAAGTGAAGTAGCT+TGG - tig0026696:51878-51897 None:intergenic 45.0%
!!! AACCTCATCGGTTTTCGGAT+CGG - tig0026696:51967-51986 None:intergenic 45.0%
!!! GCGAAAACCTCATCGGTTTT+CGG - tig0026696:51972-51991 None:intergenic 45.0%
ACTCCTTCTGATGCGAACAA+CGG + tig0026696:52098-52117 Msa1430560:CDS 45.0%
GAGTTTCGTCACATTTACCG+TGG + tig0026696:52236-52255 Msa1430560:CDS 45.0%
GTTCACAAACCTACTCCAAC+CGG - tig0026696:52288-52307 None:intergenic 45.0%
!! AACGCTAAGAAGCTTGTTGC+TGG + tig0026696:52305-52324 Msa1430560:CDS 45.0%
GAACTAATCGAACAGCACGA+CGG - tig0026696:52382-52401 None:intergenic 45.0%
AGATTGTGTCTTCCGATCTG+TGG + tig0026696:52446-52465 Msa1430560:CDS 45.0%
CTACTTCTCACTCCACAGAT+CGG - tig0026696:52461-52480 None:intergenic 45.0%
GATCTGTGGAGTGAGAAGTA+GGG + tig0026696:52460-52479 Msa1430560:CDS 45.0%
AGTGGTGTATTATCCGAGAG+CGG + tig0026696:52601-52620 Msa1430560:CDS 45.0%
! GGATTTTGTGTTGAAAGCGG+AGG + tig0026696:52631-52650 Msa1430560:CDS 45.0%
!! ATGAGTGTTACTTGGTGTCC+TGG + tig0026696:52668-52687 Msa1430560:CDS 45.0%
TGGAGACTGATGATTCTTCC+AGG + tig0026696:52711-52730 Msa1430560:CDS 45.0%
TCCAGGACTACTTGGTTTCA+AGG + tig0026696:52728-52747 Msa1430560:CDS 45.0%
ACCTTGAAACCAAGTAGTCC+TGG - tig0026696:52732-52751 None:intergenic 45.0%
GTTTCAAGGTGTAGTGTCTC+AGG + tig0026696:52742-52761 Msa1430560:CDS 45.0%
AGGTTTCTGTTCCTGATCGT+GGG + tig0026696:52762-52781 Msa1430560:CDS 45.0%
CATACATGAAGCATACGCCA+AGG - tig0026696:52803-52822 None:intergenic 45.0%
CTTGGCGTATGCTTCATGTA+TGG + tig0026696:52801-52820 Msa1430560:intron 45.0%
TGAGTATGGAAGAGTTGCTG+TGG + tig0026696:53061-53080 Msa1430560:intron 45.0%
AAAGAAGTTCCACCTGCCAA+GGG - tig0026696:53848-53867 None:intergenic 45.0%
! GTCCTTTTCAATGGGGGAAA+GGG - tig0026696:53894-53913 None:intergenic 45.0%
! AGTCCTTTTCAATGGGGGAA+AGG - tig0026696:53895-53914 None:intergenic 45.0%
! CCTCTAGTCCTTTTCAATGG+GGG - tig0026696:53900-53919 None:intergenic 45.0%
! CCCTCTAGTCCTTTTCAATG+GGG - tig0026696:53901-53920 None:intergenic 45.0%
CCCCATTGAAAAGGACTAGA+GGG + tig0026696:53898-53917 Msa1430560:CDS 45.0%
! CCCCTCTAGTCCTTTTCAAT+GGG - tig0026696:53902-53921 None:intergenic 45.0%
CCCATTGAAAAGGACTAGAG+GGG + tig0026696:53899-53918 Msa1430560:CDS 45.0%
! ACCCCTCTAGTCCTTTTCAA+TGG - tig0026696:53903-53922 None:intergenic 45.0%
!! AAAAGGACTAGAGGGGTATC+TGG + tig0026696:53906-53925 Msa1430560:CDS 45.0%
!! AAAGGACTAGAGGGGTATCT+GGG + tig0026696:53907-53926 Msa1430560:CDS 45.0%
! GTATCTGGGGTGTTAACTGA+TGG + tig0026696:53921-53940 Msa1430560:CDS 45.0%
! GAGACCCCTTTTCTATCACA+GGG + tig0026696:53949-53968 Msa1430560:CDS 45.0%
CAAAGACGGAAGTTATCACC+TGG - tig0026696:54092-54111 None:intergenic 45.0%
CAAAGGAAGGCAAACTACTC+TGG - tig0026696:54217-54236 None:intergenic 45.0%
! CAGAGTAGTTTGCCTTCCTT+TGG + tig0026696:54215-54234 Msa1430560:CDS 45.0%
CCGAACAAAATCTGTGCCAA+AGG - tig0026696:54234-54253 None:intergenic 45.0%
ACTGCAACTCAATGAAACCC+GGG + tig0026696:54261-54280 Msa1430560:CDS 45.0%
CCCGTTGAAAGTGGTTCAAA+TGG + tig0026696:54329-54348 Msa1430560:CDS 45.0%
ACAGGAGATGACAGCAGTAA+GGG + tig0026696:54362-54381 Msa1430560:CDS 45.0%
AGGCATTAACAACCCTCTTG+AGG + tig0026696:54400-54419 Msa1430560:CDS 45.0%
GAGTAAGTCGAATCCTCAAG+AGG - tig0026696:54416-54435 None:intergenic 45.0%
AAATTGCTCGACAGGCTTGA+TGG + tig0026696:54437-54456 Msa1430560:CDS 45.0%
CCTCAACTGTTGAGGCTATT+TGG - tig0026696:54469-54488 None:intergenic 45.0%
CCAAATAGCCTCAACAGTTG+AGG + tig0026696:54466-54485 Msa1430560:CDS 45.0%
!!! CTAGGAGTGTTTTTGCTCTG+TGG - tig0026696:54844-54863 None:intergenic 45.0%
CACAGAGCAAAAACACTCCT+AGG + tig0026696:54842-54861 Msa1430560:intron 45.0%
! ACTTTGGGTTCTTTCCATGC+AGG + tig0026696:55241-55260 Msa1430560:intron 45.0%
TCTCAATTTGACCCCGCTAT+TGG + tig0026696:55436-55455 Msa1430560:three_prime_UTR 45.0%
TTGGAGACGGTGGTAGTACT+TGG - tig0026696:51746-51765 None:intergenic 50.0%
!!! GTTGCGTTTTTTGGAGACGG+TGG - tig0026696:51756-51775 None:intergenic 50.0%
ATTGACGGAGGGGATTTGCA+CGG - tig0026696:51820-51839 None:intergenic 50.0%
CTACTTCCCTCAAGGTCACA+TGG + tig0026696:51851-51870 Msa1430560:CDS 50.0%
CTTGGTCCATGTGACCTTGA+GGG - tig0026696:51860-51879 None:intergenic 50.0%
TAGGGACGAGAGAGAAGAAG+AGG - tig0026696:51909-51928 None:intergenic 50.0%
GAGACGGAGCAGAGAATGTA+GGG - tig0026696:51927-51946 None:intergenic 50.0%
!!! GTGGTGGATTTTCTGTTCCG+AGG + tig0026696:52120-52139 Msa1430560:CDS 50.0%
AACCGGTGGTCAACAAATGC+CGG - tig0026696:52271-52290 None:intergenic 50.0%
CGATCTGTGGAGTGAGAAGT+AGG + tig0026696:52459-52478 Msa1430560:CDS 50.0%
GGTGGATGAAGAAGAGAAGC+TGG + tig0026696:52481-52500 Msa1430560:CDS 50.0%
GGATGAAGAAGAGAAGCTGG+TGG + tig0026696:52484-52503 Msa1430560:CDS 50.0%
! AGAGAAGCTGGTGGATGAGA+AGG + tig0026696:52493-52512 Msa1430560:CDS 50.0%
!!! TGGATGAGAAGGCGTTTTCG+AGG + tig0026696:52504-52523 Msa1430560:CDS 50.0%
GTGGTGTATTATCCGAGAGC+GGG + tig0026696:52602-52621 Msa1430560:CDS 50.0%
TGGTGTATTATCCGAGAGCG+GGG + tig0026696:52603-52622 Msa1430560:CDS 50.0%
TGTGTTGAAAGCGGAGGTTG+TGG + tig0026696:52637-52656 Msa1430560:CDS 50.0%
! ATGCGGCGATGAGTGTTACT+TGG + tig0026696:52660-52679 Msa1430560:CDS 50.0%
CAGGTTTCTGTTCCTGATCG+TGG + tig0026696:52761-52780 Msa1430560:CDS 50.0%
GGTTTCTGTTCCTGATCGTG+GGG + tig0026696:52763-52782 Msa1430560:CDS 50.0%
GAAAGAAGTTCCACCTGCCA+AGG - tig0026696:53849-53868 None:intergenic 50.0%
CCCCCATTGAAAAGGACTAG+AGG + tig0026696:53897-53916 Msa1430560:CDS 50.0%
!! AAGGACTAGAGGGGTATCTG+GGG + tig0026696:53908-53927 Msa1430560:CDS 50.0%
! GGGGTGTTAACTGATGGAGA+TGG + tig0026696:53927-53946 Msa1430560:CDS 50.0%
! GGAGACCCCTTTTCTATCAC+AGG + tig0026696:53948-53967 Msa1430560:CDS 50.0%
! TACTTTTCCTGCTGGCATGC+AGG + tig0026696:54022-54041 Msa1430560:CDS 50.0%
! ACTTTTCCTGCTGGCATGCA+GGG + tig0026696:54023-54042 Msa1430560:CDS 50.0%
AACGTTGGCAGTTCTCACTC+TGG + tig0026696:54173-54192 Msa1430560:CDS 50.0%
TAGCTGAAACGTTACAGGCC+CGG - tig0026696:54282-54301 None:intergenic 50.0%
ACAGAACAGCCCGTTGAAAG+TGG + tig0026696:54320-54339 Msa1430560:CDS 50.0%
CACAGGAGATGACAGCAGTA+AGG + tig0026696:54361-54380 Msa1430560:CDS 50.0%
AAGGGCTGCAACGAAACTGA+AGG + tig0026696:54380-54399 Msa1430560:CDS 50.0%
CTGTTGAGGCTATTTGGCAC+TGG - tig0026696:54463-54482 None:intergenic 50.0%
ATAGCACGCCTCAACTGTTG+AGG - tig0026696:54477-54496 None:intergenic 50.0%
AAAAGATGGTCCTGTCTGCG+TGG - tig0026696:55274-55293 None:intergenic 50.0%
GAGACGGTGGTAGTACTTGG+CGG - tig0026696:51743-51762 None:intergenic 55.0%
! CCAGAGTTTGGGGTTGAGTG+TGG - tig0026696:51778-51797 None:intergenic 55.0%
CCACACTCAACCCCAAACTC+TGG + tig0026696:51775-51794 Msa1430560:CDS 55.0%
CGATAGCTCGCCAGAGTTTG+GGG - tig0026696:51788-51807 None:intergenic 55.0%
GCGATAGCTCGCCAGAGTTT+GGG - tig0026696:51789-51808 None:intergenic 55.0%
AAACTCTGGCGAGCTATCGC+CGG + tig0026696:51789-51808 Msa1430560:CDS 55.0%
GCTTGGTCCATGTGACCTTG+AGG - tig0026696:51861-51880 None:intergenic 55.0%
GGAGACGGAGCAGAGAATGT+AGG - tig0026696:51928-51947 None:intergenic 55.0%
GAGGAAATGAACGGCGGAGA+CGG - tig0026696:51943-51962 None:intergenic 55.0%
ATCGGCGAGGAAATGAACGG+CGG - tig0026696:51949-51968 None:intergenic 55.0%
CGGATCGGCGAGGAAATGAA+CGG - tig0026696:51952-51971 None:intergenic 55.0%
GCTTCAATCACCGGAATCCG+TGG - tig0026696:52038-52057 None:intergenic 55.0%
CCGTCGTCAGCTTCAATCAC+CGG - tig0026696:52047-52066 None:intergenic 55.0%
CCGGTGATTGAAGCTGACGA+CGG + tig0026696:52044-52063 Msa1430560:CDS 55.0%
TTGAAGCTGACGACGGTGAG+AGG + tig0026696:52051-52070 Msa1430560:CDS 55.0%
CCACCGTTGTTCGCATCAGA+AGG - tig0026696:52104-52123 None:intergenic 55.0%
CCTTCTGATGCGAACAACGG+TGG + tig0026696:52101-52120 Msa1430560:CDS 55.0%
TCTGATGCGAACAACGGTGG+TGG + tig0026696:52104-52123 Msa1430560:CDS 55.0%
! GGCATTTGTTGACCACCGGT+TGG + tig0026696:52270-52289 Msa1430560:CDS 55.0%
! TGTTGACCACCGGTTGGAGT+AGG + tig0026696:52276-52295 Msa1430560:CDS 55.0%
CACAAACCTACTCCAACCGG+TGG - tig0026696:52285-52304 None:intergenic 55.0%
CTGTGGAGTGAGAAGTAGGG+TGG + tig0026696:52463-52482 Msa1430560:CDS 55.0%
!!! GAGAAGGCGTTTTCGAGGCA+CGG + tig0026696:52509-52528 Msa1430560:CDS 55.0%
!!! AGAAGGCGTTTTCGAGGCAC+GGG + tig0026696:52510-52529 Msa1430560:CDS 55.0%
GAAATGGCAGCACAGGGGAT+GGG + tig0026696:52572-52591 Msa1430560:CDS 55.0%
AAATGGCAGCACAGGGGATG+GGG + tig0026696:52573-52592 Msa1430560:CDS 55.0%
ACAGGGGATGGGGTTTGAAG+TGG + tig0026696:52583-52602 Msa1430560:CDS 55.0%
TGTATTATCCGAGAGCGGGG+TGG + tig0026696:52606-52625 Msa1430560:CDS 55.0%
GAAAGCGGAGGTTGTGGATG+CGG + tig0026696:52643-52662 Msa1430560:CDS 55.0%
! GGAAAGGGCGTATGAAGGGA+AGG - tig0026696:53879-53898 None:intergenic 55.0%
! TGGGGGAAAGGGCGTATGAA+GGG - tig0026696:53883-53902 None:intergenic 55.0%
! ATGGGGGAAAGGGCGTATGA+AGG - tig0026696:53884-53903 None:intergenic 55.0%
CGCCCTTTCCCCCATTGAAA+AGG + tig0026696:53889-53908 Msa1430560:CDS 55.0%
CTTTGGCAGCAACACAGTGC+CGG + tig0026696:54124-54143 Msa1430560:CDS 55.0%
TTTGGCAGCAACACAGTGCC+GGG + tig0026696:54125-54144 Msa1430560:CDS 55.0%
!! GGCAAACTACTCTGGCTCTC+TGG - tig0026696:54209-54228 None:intergenic 55.0%
AGCTGAAACGTTACAGGCCC+GGG - tig0026696:54281-54300 None:intergenic 55.0%
!! TGCGTGGAGAAGTACCTGCA+TGG - tig0026696:55258-55277 None:intergenic 55.0%
AGGTACTTCTCCACGCAGAC+AGG + tig0026696:55261-55280 Msa1430560:intron 55.0%
GGCGATAGCTCGCCAGAGTT+TGG - tig0026696:51790-51809 None:intergenic 60.0%
!!! CATCGGTTTTCGGATCGGCG+AGG - tig0026696:51962-51981 None:intergenic 60.0%
CGCCGATCCGAAAACCGATG+AGG + tig0026696:51962-51981 Msa1430560:CDS 60.0%
GTGGTCAACAAATGCCGGCG+CGG - tig0026696:52266-52285 None:intergenic 60.0%
! CGCCGGCATTTGTTGACCAC+CGG + tig0026696:52266-52285 Msa1430560:CDS 60.0%
GTTCCGAATCGGAGTAGCGC+CGG + tig0026696:52398-52417 Msa1430560:CDS 60.0%
ATCGGAGCAAACACCGCCAC+CGG - tig0026696:52420-52439 None:intergenic 60.0%
!! GCGTTTTCGAGGCACGGGAA+GGG + tig0026696:52515-52534 Msa1430560:CDS 60.0%
!! CGTTTTCGAGGCACGGGAAG+GGG + tig0026696:52516-52535 Msa1430560:CDS 60.0%
CGGGAAGGGGAAGTTGTCTC+CGG + tig0026696:52529-52548 Msa1430560:CDS 60.0%
GAAGGGGAAGTTGTCTCCGG+TGG + tig0026696:52532-52551 Msa1430560:CDS 60.0%
GGAAATGGCAGCACAGGGGA+TGG + tig0026696:52571-52590 Msa1430560:CDS 60.0%
TTATCCGAGAGCGGGGTGGT+CGG + tig0026696:52610-52629 Msa1430560:CDS 60.0%
AAATCCGACCACCCCGCTCT+CGG - tig0026696:52617-52636 None:intergenic 60.0%
CTGTTCCTGATCGTGGGGCT+TGG + tig0026696:52768-52787 Msa1430560:CDS 60.0%
GGGCTTGGAGAGGTTCACCT+TGG + tig0026696:52783-52802 Msa1430560:CDS 60.0%
CTTCCAAGTGGGTCAGCCCT+TGG + tig0026696:53829-53848 Msa1430560:CDS 60.0%
! CGGCACTGTGTTGCTGCCAA+AGG - tig0026696:54126-54145 None:intergenic 60.0%
TTGGCAGCAACACAGTGCCG+GGG + tig0026696:54126-54145 Msa1430560:CDS 60.0%
TTTACCGTGGAACGCCGCGC+CGG + tig0026696:52249-52268 Msa1430560:CDS 65.0%
CCACCGGCGCTACTCCGATT+CGG - tig0026696:52404-52423 None:intergenic 65.0%
!! AATCGGAGTAGCGCCGGTGG+CGG + tig0026696:52404-52423 Msa1430560:CDS 65.0%
!! GGCGTTTTCGAGGCACGGGA+AGG + tig0026696:52514-52533 Msa1430560:CDS 65.0%
GGGGAAGTTGTCTCCGGTGG+CGG + tig0026696:52535-52554 Msa1430560:CDS 65.0%
! GTTGTCTCCGGTGGCGGTTG+CGG + tig0026696:52541-52560 Msa1430560:CDS 65.0%
GCGGCGGAAATGGCAGCACA+GGG + tig0026696:52566-52585 Msa1430560:CDS 65.0%
CGGCGGAAATGGCAGCACAG+GGG + tig0026696:52567-52586 Msa1430560:CDS 65.0%
CCTCTCCAAGCCCCACGATC+AGG - tig0026696:52776-52795 None:intergenic 65.0%
CCTGATCGTGGGGCTTGGAG+AGG + tig0026696:52773-52792 Msa1430560:CDS 65.0%
CTGCCAAGGGCTGACCCACT+TGG - tig0026696:53835-53854 None:intergenic 65.0%
CAAGTGGGTCAGCCCTTGGC+AGG + tig0026696:53833-53852 Msa1430560:CDS 65.0%
GGGGATTTGCACGGCAGCGC+CGG - tig0026696:51811-51830 None:intergenic 70.0%
AATGCCGGCGCGGCGTTCCA+CGG - tig0026696:52256-52275 None:intergenic 70.0%
! CCGAATCGGAGTAGCGCCGG+TGG + tig0026696:52401-52420 Msa1430560:CDS 70.0%
GGTTGCGGAGGCGGCGGAAA+TGG + tig0026696:52556-52575 Msa1430560:CDS 70.0%
GGCGGCGGAAATGGCAGCAC+AGG + tig0026696:52565-52584 Msa1430560:CDS 70.0%
GTGGGTCAGCCCTTGGCAGG+TGG + tig0026696:53836-53855 Msa1430560:CDS 70.0%
CTGGCTCCCTGCATGCCAGC+AGG - tig0026696:54032-54051 None:intergenic 70.0%
CTGCTGGCATGCAGGGAGCC+AGG + tig0026696:54030-54049 Msa1430560:CDS 70.0%
! GTCTCCGGTGGCGGTTGCGG+AGG + tig0026696:52544-52563 Msa1430560:CDS 75.0%
! TCCGGTGGCGGTTGCGGAGG+CGG + tig0026696:52547-52566 Msa1430560:CDS 75.0%
! GCCGCCTCCGCAACCGCCAC+CGG - tig0026696:52551-52570 None:intergenic 80.0%
!! GGTGGCGGTTGCGGAGGCGG+CGG + tig0026696:52550-52569 Msa1430560:CDS 80.0%
Chromosome Type Strat End Strand Name
tig0026696 gene 51623 55516 51623 ID=Msa1430560;Name=Msa1430560
tig0026696 mRNA 51623 55516 51623 ID=Msa1430560-mRNA-1;Parent=Msa1430560;Name=Msa1430560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|0.33|0.25|4|384|608
tig0026696 exon 51623 52817 51623 ID=Msa1430560-mRNA-1:exon:7047;Parent=Msa1430560-mRNA-1
tig0026696 exon 53798 54541 53798 ID=Msa1430560-mRNA-1:exon:7048;Parent=Msa1430560-mRNA-1
tig0026696 exon 55079 55169 55079 ID=Msa1430560-mRNA-1:exon:7049;Parent=Msa1430560-mRNA-1
tig0026696 exon 55263 55516 55263 ID=Msa1430560-mRNA-1:exon:7050;Parent=Msa1430560-mRNA-1
tig0026696 five_prime_UTR 51623 51695 51623 ID=Msa1430560-mRNA-1:five_prime_utr;Parent=Msa1430560-mRNA-1
tig0026696 CDS 51696 52817 51696 ID=Msa1430560-mRNA-1:cds;Parent=Msa1430560-mRNA-1
tig0026696 CDS 53798 54502 53798 ID=Msa1430560-mRNA-1:cds;Parent=Msa1430560-mRNA-1
tig0026696 three_prime_UTR 54503 54541 54503 ID=Msa1430560-mRNA-1:three_prime_utr;Parent=Msa1430560-mRNA-1
tig0026696 three_prime_UTR 55079 55169 55079 ID=Msa1430560-mRNA-1:three_prime_utr;Parent=Msa1430560-mRNA-1
tig0026696 three_prime_UTR 55263 55516 55263 ID=Msa1430560-mRNA-1:three_prime_utr;Parent=Msa1430560-mRNA-1
Gene Sequence

>Msa1430560

ATGTTCGAAAAACCCTCACTCATTTTCATTCAACCAATCATGAACCGCCAAGTACTACCACCGTCTCCAAAAAACGCAACCACACTCAACCCCAAACTCTGGCGAGCTATCGCCGGCGCTGCCGTGCAAATCCCCTCCGTCAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTACTTCACTTCCGAACAATCTCTCACCTCTTCTTCTCTCTCGTCCCTACATTCTCTGCTCCGTCTCCGCCGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCGTTGAATGATTTCACTGTTAATTTTCCACGGATTCCGGTGATTGAAGCTGACGACGGTGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCGAACAACGGTGGTGGATTTTCTGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGTTGGATTATAGTATGGATCCTCCGTTGCAGAATTTGTTGATTACTGATGTTCATGGTTTGACTTGGGAGTTTCGTCACATTTACCGTGGAACGCCGCGCCGGCATTTGTTGACCACCGGTTGGAGTAGGTTTGTGAACGCTAAGAAGCTTGTTGCTGGTGATTCCGTTGTTTTTATGAAGAATACTAGAGGTGCAATGTTCATCGGAATCCGTCGTGCTGTTCGATTAGTTCCGAATCGGAGTAGCGCCGGTGGCGGTGTTTGCTCCGATGTGTCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAGTAGGGTGGATGAAGAAGAGAAGCTGGTGGATGAGAAGGCGTTTTCGAGGCACGGGAAGGGGAAGTTGTCTCCGGTGGCGGTTGCGGAGGCGGCGGAAATGGCAGCACAGGGGATGGGGTTTGAAGTGGTGTATTATCCGAGAGCGGGGTGGTCGGATTTTGTGTTGAAAGCGGAGGTTGTGGATGCGGCGATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAAGGTGTAGTGTCTCAGGTTTCTGTTCCTGATCGTGGGGCTTGGAGAGGTTCACCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTGGAACTTCTTTCTACTACACCTTCCCTTCATACGCCCTTTCCCCCATTGAAAAGGACTAGAGGGGTATCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACAGGGTTCACTAATTCAACAATGGGACAATTGAATCAACCATTGTTGAGTTACAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCCGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTTCCGTCTTTGTATGGGTAACTCCTTTGGCAGCAACACAGTGCCGGGGTTAAAATCTTTTTCAACGGATCTAAACGTTGGCAGTTCTCACTCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTTCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTGTAACGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACAGCCCGTTGAAAGTGGTTCAAATGGTACTGTTAGCACAGGAGATGACAGCAGTAAGGGCTGCAACGAAACTGAAGGCATTAACAACCCTCTTGAGGATTCGACTTACTCAAAATTGCTCGACAGGCTTGATGGCCAGTGCCAAATAGCCTCAACAGTTGAGGCGTGCTATCTGTGA
Protein sequence

>Msa1430560

MFEKPSLIFIQPIMNRQVLPPSPKNATTLNPKLWRAIAGAAVQIPSVNSRVYYFPQGHMDQATSLPNNLSPLLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFTVNFPRIPVIEADDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPLQNLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNAKKLVAGDSVVFMKNTRGAMFIGIRRAVRLVPNRSSAGGGVCSDVSRLCLPICGVRSRVDEEEKLVDEKAFSRHGKGKLSPVAVAEAAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSQVSVPDRGAWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPPLKRTRGVSGVLTDGDGDPFSITGFTNSTMGQLNQPLLSYSTFPAGMQGARHDLFSVSSFSNFPGDNFRLCMGNSFGSNTVPGLKSFSTDLNVGSSHSGDFSPESQSSLPSFGTDFVRNYNCNSMKPGPVTFQLFGAVIQTEQPVESGSNGTVSTGDDSSKGCNETEGINNPLEDSTYSKLLDRLDGQCQIASTVEACYL*