AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902820 MtrunA17_Chr3g0115271 97.311 595 14 1 14 608 1 593 0.0 1197
Msa0902820 MtrunA17_Chr5g0424931 44.846 553 250 14 32 573 19 527 5.26e-146 432
Msa0902820 MtrunA17_Chr2g0326761 43.494 561 281 14 28 569 7 550 2.55e-129 395
Msa0902820 MtrunA17_Chr5g0417281 40.598 569 261 14 29 577 8 519 7.12e-128 386
Msa0902820 MtrunA17_Chr7g0264171 42.857 525 249 16 28 516 27 536 1.84e-124 380
Msa0902820 MtrunA17_Chr4g0028971 47.991 448 215 10 29 463 9 451 2.94e-124 382
Msa0902820 MtrunA17_Chr1g0181211 41.426 589 288 18 29 588 24 584 9.18e-122 375
Msa0902820 MtrunA17_Chr1g0199681 43.340 473 200 13 29 463 91 533 2.62e-118 367
Msa0902820 MtrunA17_Chr1g0178011 37.085 542 221 12 20 554 3 431 3.89e-107 330
Msa0902820 MtrunA17_Chr5g0436761 39.696 461 220 9 23 475 3 413 1.05e-99 311
Msa0902820 MtrunA17_Chr2g0277461 35.856 555 240 15 24 571 5 450 1.55e-98 308
Msa0902820 MtrunA17_Chr2g0289221 44.475 362 143 8 22 375 10 321 1.53e-91 286
Msa0902820 MtrunA17_Chr5g0417211 44.011 359 150 8 22 375 2 314 1.06e-89 283
Msa0902820 MtrunA17_Chr7g0264161 43.658 339 147 7 42 375 2 301 2.45e-85 268
Msa0902820 MtrunA17_Chr5g0424741 33.099 568 249 19 29 523 9 518 6.70e-75 248
Msa0902820 MtrunA17_Chr2g0277531 39.665 358 149 14 29 375 17 318 5.84e-72 234
Msa0902820 MtrunA17_Chr5g0424801 35.897 390 182 11 29 406 9 342 8.64e-70 230
Msa0902820 MtrunA17_Chr5g0425261 36.579 380 177 10 29 396 9 336 8.03e-69 228
Msa0902820 MtrunA17_Chr8g0376771 37.778 405 199 8 20 412 11 374 1.06e-68 239
Msa0902820 MtrunA17_Chr2g0276781 37.755 392 201 8 29 414 20 374 1.47e-68 235
Msa0902820 MtrunA17_Chr2g0282961 34.804 408 216 5 18 414 39 407 3.52e-68 233
Msa0902820 MtrunA17_Chr2g0285461 37.656 401 206 7 20 412 11 375 1.52e-67 236
Msa0902820 MtrunA17_Chr4g0009751 36.387 393 201 8 30 414 17 368 8.56e-66 226
Msa0902820 MtrunA17_Chr1g0156321 38.832 394 185 11 28 410 39 387 4.09e-65 229
Msa0902820 MtrunA17_Chr3g0109391 36.990 392 203 7 29 412 23 378 6.57e-65 228
Msa0902820 MtrunA17_Chr5g0433301 36.735 392 204 7 29 412 21 376 3.86e-64 226
Msa0902820 MtrunA17_Chr8g0385791 34.491 432 219 9 32 440 59 449 4.78e-64 225
Msa0902820 MtrunA17_Chr4g0046371 35.750 400 199 9 32 414 38 396 1.25e-62 219
Msa0902820 MtrunA17_Chr7g0239061 34.910 444 237 15 29 460 11 414 5.27e-62 217
Msa0902820 MtrunA17_Chr4g0070181 35.696 381 196 6 28 399 19 359 1.50e-60 218
Msa0902820 MtrunA17_Chr2g0326281 35.468 406 193 10 32 410 56 419 2.33e-59 212
Msa0902820 MtrunA17_Chr4g0029671 33.920 398 213 7 32 414 54 416 1.07e-57 207
Msa0902820 MtrunA17_Chr8g0346711 35.459 392 207 9 29 414 26 377 2.01e-57 204
Msa0902820 MtrunA17_Chr5g0425661 48.515 202 96 4 24 220 29 227 3.62e-54 184
Msa0902820 MtrunA17_Chr2g0301251 45.161 217 106 3 29 236 20 232 6.99e-54 198
Msa0902820 MtrunA17_Chr8g0389081 45.370 216 112 4 24 233 24 239 1.52e-50 188
Msa0902820 MtrunA17_Chr8g0389081 40.625 96 55 2 301 395 272 366 4.74e-11 66.2
Msa0902820 MtrunA17_Chr8g0356211 28.626 262 148 6 138 399 2 224 4.42e-30 120
Msa0902820 MtrunA17_Chr5g0425651 40.625 128 59 4 290 408 2 121 2.87e-24 98.2
Msa0902820 MtrunA17_Chr5g0424791 39.865 148 77 4 81 226 14 151 8.77e-22 92.0
Msa0902820 MtrunA17_Chr5g0419861 41.379 116 57 5 69 177 11 122 4.31e-14 69.7
Msa0902820 MtrunA17_Chr1g0178071 36.752 117 68 4 118 230 65 179 4.12e-12 67.8
Msa0902820 MtrunA17_Chr4g0072581 70.213 47 13 1 200 245 5 51 1.04e-11 60.8
Msa0902820 MtrunA17_Chr8g0345771 36.364 110 65 2 125 230 167 275 2.09e-11 66.6
Msa0902820 MtrunA17_Chr5g0422501 33.051 118 71 3 110 220 217 333 7.84e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902820 AT1G77850.2 47.950 561 269 11 25 575 12 559 4.08e-164 482
Msa0902820 AT1G77850.1 47.950 561 269 11 25 575 12 559 4.18e-164 481
Msa0902820 AT4G30080.1 42.376 564 284 14 29 574 16 556 1.17e-121 375
Msa0902820 AT2G28350.2 46.389 457 209 10 28 460 6 450 1.04e-119 370
Msa0902820 AT2G28350.1 46.389 457 209 10 28 460 6 450 1.99e-119 370
Msa0902820 AT5G37020.2 37.101 407 211 8 29 426 19 389 1.04e-69 240
Msa0902820 AT5G37020.1 37.101 407 211 8 29 426 19 389 2.86e-69 240
Msa0902820 AT1G30330.3 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa0902820 AT1G30330.2 38.366 404 201 8 21 412 10 377 1.10e-68 240
Msa0902820 AT1G30330.1 38.250 400 203 7 21 412 12 375 1.47e-68 240
Msa0902820 AT2G33860.1 33.983 462 244 8 32 473 54 474 1.70e-68 234
Msa0902820 AT1G59750.4 37.692 390 198 10 32 414 22 373 6.35e-66 228
Msa0902820 AT1G59750.2 37.692 390 198 10 32 414 22 373 7.75e-66 228
Msa0902820 AT1G59750.1 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa0902820 AT1G59750.3 37.692 390 198 10 32 414 22 373 7.77e-66 228
Msa0902820 AT2G46530.1 35.714 406 208 9 25 419 14 377 2.95e-63 219
Msa0902820 AT4G23980.2 36.702 376 187 10 29 395 9 342 5.28e-63 219
Msa0902820 AT4G23980.1 36.702 376 187 10 29 395 9 342 7.36e-63 219
Msa0902820 AT2G46530.3 35.309 405 211 8 25 419 35 398 9.25e-63 218
Msa0902820 AT5G60450.2 34.670 424 222 9 25 432 34 418 3.23e-62 220
Msa0902820 AT5G60450.1 35.012 417 216 9 32 432 65 442 2.55e-61 218
Msa0902820 AT1G19850.2 37.468 395 188 12 29 410 40 388 3.09e-61 219
Msa0902820 AT1G19850.1 37.468 395 188 12 29 410 51 399 3.61e-61 219
Msa0902820 AT3G61830.1 34.726 383 206 6 29 406 22 365 1.62e-60 212
Msa0902820 AT5G62000.4 33.487 433 222 10 32 440 61 451 8.24e-60 214
Msa0902820 AT5G62000.2 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0902820 AT5G62000.5 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0902820 AT5G62000.3 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0902820 AT5G62000.1 33.487 433 222 10 32 440 61 451 8.30e-60 214
Msa0902820 AT1G35520.1 31.481 486 257 15 24 478 19 459 1.10e-56 201
Msa0902820 AT1G34410.1 32.083 480 246 18 32 478 27 459 1.27e-55 199
Msa0902820 AT1G34310.1 34.761 397 204 11 32 419 27 377 3.56e-55 197
Msa0902820 AT1G35240.1 34.596 396 202 12 32 417 27 375 9.03e-55 196
Msa0902820 AT1G19220.1 45.161 217 106 3 29 236 20 232 4.89e-54 199
Msa0902820 AT5G20730.1 45.161 217 106 3 29 236 21 233 3.71e-53 197
Msa0902820 AT5G20730.2 45.161 217 106 3 29 236 21 233 4.06e-53 196
Msa0902820 AT5G20730.3 45.161 217 106 3 29 236 21 233 4.56e-53 196
Msa0902820 AT1G34390.1 33.753 397 206 12 32 419 27 375 2.35e-52 189
Msa0902820 AT2G33860.2 35.028 354 182 6 130 473 2 317 9.59e-52 184
Msa0902820 AT1G35540.1 33.165 395 213 11 32 419 27 377 2.91e-51 187
Msa0902820 AT5G37020.3 38.000 300 147 6 130 426 31 294 6.27e-51 187
Msa0902820 AT3G61830.2 34.545 330 177 5 77 406 24 314 1.13e-48 178
Msa0902820 AT1G34170.1 30.548 383 206 11 27 397 20 354 6.06e-45 167
Msa0902820 AT2G46530.2 35.786 299 144 8 127 419 34 290 1.61e-42 160
Msa0902820 ATMG00940.1 50.000 154 71 3 217 370 1 148 3.94e-39 141
Msa0902820 AT1G34170.2 28.982 383 186 11 27 397 20 328 8.69e-39 149
Msa0902820 AT1G34170.3 28.982 383 186 11 27 397 20 328 3.51e-38 149
Msa0902820 AT1G43950.1 38.725 204 111 7 32 229 27 222 1.13e-34 131
Msa0902820 AT3G61970.1 34.454 119 73 3 117 230 9 127 1.55e-12 69.3
Msa0902820 AT2G36080.3 37.273 110 65 2 125 230 33 142 2.71e-12 67.4
Msa0902820 AT2G36080.4 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa0902820 AT2G36080.2 37.273 110 65 2 125 230 33 142 3.47e-12 65.5
Msa0902820 AT2G36080.1 37.273 110 65 2 125 230 33 142 3.52e-12 67.4
Msa0902820 AT2G46870.1 33.071 127 79 2 124 245 29 154 2.04e-11 65.9
Msa0902820 AT4G01500.1 38.542 96 50 2 126 218 32 121 2.59e-11 65.9
Msa0902820 AT1G01030.1 33.613 119 73 2 116 229 42 159 2.68e-11 65.9
Msa0902820 AT1G01030.2 33.613 119 73 2 116 229 42 159 2.99e-11 65.9
Msa0902820 AT3G25730.1 34.314 102 63 2 130 227 183 284 8.78e-11 64.3

Find 210 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGTTCAGAACTTTAT+TGG 0.164550 6_1:-102697921 Msa0902820:intron
CCTCAACTGTTGAGGCTATT+TGG 0.202921 6_1:+102698522 None:intergenic
CCTGTAACGTTTCAGCTATT+TGG 0.208521 6_1:-102698704 Msa0902820:CDS
GAAACTAAGTATGTAATATT+TGG 0.249464 6_1:-102697641 Msa0902820:three_prime_UTR
TCATTGTTCAGAACTTTATT+GGG 0.286084 6_1:-102697920 Msa0902820:intron
CTGTTCCTGATCGTGGGGCT+TGG 0.289614 6_1:-102700220 Msa0902820:CDS
GCGATAGCTCGCCAGAGTTT+GGG 0.291734 6_1:+102701202 None:intergenic
TCTCAATTTGACCCCGCTAT+TGG 0.292420 6_1:-102697552 Msa0902820:three_prime_UTR
AAAAGGACTAGAGGGGTATC+TGG 0.298766 6_1:-102699082 Msa0902820:CDS
GGCGATAGCTCGCCAGAGTT+TGG 0.304479 6_1:+102701201 None:intergenic
AAATCCCCTCCGTCAATTCT+AGG 0.308448 6_1:-102701165 Msa0902820:CDS
TCCTCCGTTGGATTATAGTA+TGG 0.314074 6_1:-102700825 Msa0902820:CDS
TCCGGTGGCGGTTGCGGAGG+CGG 0.344489 6_1:-102700441 Msa0902820:CDS
CAGAGTAGTTTGCCTTCCTT+TGG 0.347823 6_1:-102698773 Msa0902820:CDS
TTTGTTTGTCTTATTGAAAC+CGG 0.362279 6_1:-102697671 Msa0902820:three_prime_UTR
TGATAACTTCCGTCTTTGTA+TGG 0.363524 6_1:-102698894 Msa0902820:CDS
TTGGAAGTTTGCAACACTTC+AGG 0.367022 6_1:+102699175 None:intergenic
TCCAGGACTACTTGGTTTCA+AGG 0.368052 6_1:-102700260 Msa0902820:CDS
GGCGGCGGAAATGGCAGCAC+AGG 0.371956 6_1:-102700423 Msa0902820:CDS
GGTTGCGGAGGCGGCGGAAA+TGG 0.372996 6_1:-102700432 Msa0902820:CDS
TGGAGACTGATGATTCTTCC+AGG 0.375310 6_1:-102700277 Msa0902820:CDS
CCAAATAGCTGAAACGTTAC+AGG 0.375667 6_1:+102698704 None:intergenic
CTGCTGGCATGCAGGGAGCC+AGG 0.375982 6_1:-102698958 Msa0902820:CDS
ATACTTAGTTTCATTGTTCC+CGG 0.381218 6_1:+102697652 None:intergenic
TTGGAGACGGTGGTAGTACT+TGG 0.385584 6_1:+102701245 None:intergenic
TTTGGCAGCAACACAGTGCC+GGG 0.386977 6_1:-102698863 Msa0902820:CDS
CTTTGTATGGGTAACTCCTT+TGG 0.387691 6_1:-102698881 Msa0902820:CDS
TTGTTGATTACTGATGTTCA+TGG 0.389456 6_1:-102700785 Msa0902820:CDS
GTTTCAAGGTGTAGTGTCTC+AGG 0.398107 6_1:-102700246 Msa0902820:CDS
TTCTATATAAATCCAATAGC+GGG 0.403966 6_1:+102697540 None:intergenic
CTGGCTCCCTGCATGCCAGC+AGG 0.411242 6_1:+102698959 None:intergenic
AGGTTTCTGTTCCTGATCGT+GGG 0.413423 6_1:-102700226 Msa0902820:CDS
GTGAACCCTGTGATAGAAAA+GGG 0.417152 6_1:+102699034 None:intergenic
CGCCGGCATTTGTTGACCAC+CGG 0.418386 6_1:-102700722 Msa0902820:CDS
AAATTGCTCGACAGGCTTGA+TGG 0.418640 6_1:-102698551 Msa0902820:CDS
AGCTGAAACGTTACAGGCCC+GGG 0.423670 6_1:+102698710 None:intergenic
ATGATTCTTCCAGGACTACT+TGG 0.424084 6_1:-102700268 Msa0902820:CDS
AGAAGAGGTGAGAGATTGTT+CGG 0.425048 6_1:+102701097 None:intergenic
GTTGTCTCCGGTGGCGGTTG+CGG 0.431234 6_1:-102700447 Msa0902820:CDS
CTGCCAAGGGCTGACCCACT+TGG 0.431622 6_1:+102699156 None:intergenic
CAAGTGGGTCAGCCCTTGGC+AGG 0.434174 6_1:-102699155 Msa0902820:CDS
CAGGTTTCTGTTCCTGATCG+TGG 0.441155 6_1:-102700227 Msa0902820:CDS
GGCAAACTACTCTGGCTCTC+TGG 0.444672 6_1:+102698782 None:intergenic
AGTACTTGGCGGTTCATGAT+TGG 0.452130 6_1:+102701259 None:intergenic
AAATGGCAGCACAGGGGATG+GGG 0.452139 6_1:-102700415 Msa0902820:CDS
AACGCTAAGAAGCTTGTTGC+TGG 0.453003 6_1:-102700683 Msa0902820:CDS
CTAACCAACCATTGTACTCT+AGG 0.453897 6_1:+102697577 None:intergenic
AGTGAACCCTGTGATAGAAA+AGG 0.454541 6_1:+102699033 None:intergenic
GCCGCCTCCGCAACCGCCAC+CGG 0.456465 6_1:+102700440 None:intergenic
GGGGAAGTTGTCTCCGGTGG+CGG 0.456900 6_1:-102700453 Msa0902820:CDS
GGTGGCGGTTGCGGAGGCGG+CGG 0.459780 6_1:-102700438 Msa0902820:CDS
GAAATGGCAGCACAGGGGAT+GGG 0.460169 6_1:-102700416 Msa0902820:CDS
GGAAATGGCAGCACAGGGGA+TGG 0.461216 6_1:-102700417 Msa0902820:CDS
CAAAGGAAGGCAAACTACTC+TGG 0.464413 6_1:+102698774 None:intergenic
TCCTGGAATGAGAATCAAAA+TGG 0.464829 6_1:-102700303 Msa0902820:CDS
GGGGATTTGCACGGCAGCGC+CGG 0.466220 6_1:+102701180 None:intergenic
GGTGGATGAAGAAGAGAAGC+TGG 0.468766 6_1:-102700507 Msa0902820:CDS
AAAGGACTAGAGGGGTATCT+GGG 0.471476 6_1:-102699081 Msa0902820:CDS
CGATCTGTGGAGTGAGAAGT+AGG 0.471915 6_1:-102700529 Msa0902820:CDS
CCTCTCCAAGCCCCACGATC+AGG 0.472164 6_1:+102700215 None:intergenic
CACAGGAGATGACAGCAGTA+AGG 0.472700 6_1:-102698627 Msa0902820:CDS
ACCATTTGAACCACTTTCAA+CGG 0.473718 6_1:+102698658 None:intergenic
ATCGGAGCAAACACCGCCAC+CGG 0.479208 6_1:+102700571 None:intergenic
CCATTTGAACCACTTTCAAC+GGG 0.480213 6_1:+102698659 None:intergenic
CTGATGTTCATGGTTTGACT+TGG 0.481505 6_1:-102700775 Msa0902820:CDS
CTTTGGCAGCAACACAGTGC+CGG 0.482301 6_1:-102698864 Msa0902820:CDS
CCACCGGCGCTACTCCGATT+CGG 0.482322 6_1:+102700587 None:intergenic
CCCGTTGAAAGTGGTTCAAA+TGG 0.482554 6_1:-102698659 Msa0902820:CDS
CTTACTCAAAATTGCTCGAC+AGG 0.482573 6_1:-102698559 Msa0902820:CDS
ATTGTTTCTGATAGATTACA+TGG 0.486179 6_1:-102699204 Msa0902820:intron
AATCCCCTCCGTCAATTCTA+GGG 0.486899 6_1:-102701164 Msa0902820:CDS
CGGGAAGGGGAAGTTGTCTC+CGG 0.490275 6_1:-102700459 Msa0902820:CDS
ACCTTGAAACCAAGTAGTCC+TGG 0.491621 6_1:+102700259 None:intergenic
GAGGAAATGAACGGCGGAGA+CGG 0.491674 6_1:+102701048 None:intergenic
GAAGTTATCACCTGGAAAGT+TGG 0.498091 6_1:+102698907 None:intergenic
TCTCATGGCATGAAGTTCAA+TGG 0.498753 6_1:-102697878 Msa0902820:three_prime_UTR
AGAGAAGCTGGTGGATGAGA+AGG 0.506899 6_1:-102700495 Msa0902820:CDS
CTTCCAAGTGGGTCAGCCCT+TGG 0.507741 6_1:-102699159 Msa0902820:CDS
GGGTTCACTAATTCAACAAT+GGG 0.507819 6_1:-102699019 Msa0902820:CDS
ATGCACATAAGTAGCTGTAC+AGG 0.510612 6_1:-102698468 Msa0902820:intron
CTTGGTCCATGTGACCTTGA+GGG 0.511485 6_1:+102701131 None:intergenic
AATCGGAGTAGCGCCGGTGG+CGG 0.511889 6_1:-102700584 Msa0902820:CDS
ACAGGAGATGACAGCAGTAA+GGG 0.514015 6_1:-102698626 Msa0902820:CDS
ATGAGTGTTACTTGGTGTCC+TGG 0.519012 6_1:-102700320 Msa0902820:CDS
GAGACGGTGGTAGTACTTGG+CGG 0.520685 6_1:+102701248 None:intergenic
CTGTTCGATTAGTTCCGAAT+CGG 0.520734 6_1:-102700601 Msa0902820:CDS
TAGCTGAAACGTTACAGGCC+CGG 0.521167 6_1:+102698709 None:intergenic
TAGGGACGAGAGAGAAGAAG+AGG 0.523309 6_1:+102701082 None:intergenic
CTGTTGAGGCTATTTGGCAC+TGG 0.523716 6_1:+102698528 None:intergenic
GAAAGAAGTTCCACCTGCCA+AGG 0.525099 6_1:+102699142 None:intergenic
GTGGGTCAGCCCTTGGCAGG+TGG 0.528173 6_1:-102699152 Msa0902820:CDS
GCGGCGGAAATGGCAGCACA+GGG 0.528509 6_1:-102700422 Msa0902820:CDS
GTGGTGTATTATCCGAGAGC+GGG 0.529625 6_1:-102700386 Msa0902820:CDS
TCTGATGCGAACAACGGTGG+TGG 0.529876 6_1:-102700884 Msa0902820:CDS
GTCTCCGGTGGCGGTTGCGG+AGG 0.531959 6_1:-102700444 Msa0902820:CDS
CTACTTCCCTCAAGGTCACA+TGG 0.532844 6_1:-102701137 Msa0902820:CDS
AACCGGTGGTCAACAAATGC+CGG 0.533689 6_1:+102700720 None:intergenic
AACTGCAACTCAATGAAACC+CGG 0.535247 6_1:-102698728 Msa0902820:CDS
ACAGAACAGCCCGTTGAAAG+TGG 0.538177 6_1:-102698668 Msa0902820:CDS
AACGGAAAATAGATCATGCC+TGG 0.538278 6_1:+102698940 None:intergenic
GAGACGGAGCAGAGAATGTA+GGG 0.539234 6_1:+102701064 None:intergenic
GATAACTTCCGTCTTTGTAT+GGG 0.539535 6_1:-102698893 Msa0902820:CDS
GTAGTAAACCCTAGAATTGA+CGG 0.541390 6_1:+102701156 None:intergenic
GAAAGCGGAGGTTGTGGATG+CGG 0.543290 6_1:-102700345 Msa0902820:CDS
CCCCATTGAAAAGGACTAGA+GGG 0.543634 6_1:-102699090 Msa0902820:CDS
TGTTGACCACCGGTTGGAGT+AGG 0.544509 6_1:-102700712 Msa0902820:CDS
ATAAGGACACTCACTTCAGA+TGG 0.545289 6_1:+102697827 None:intergenic
TGATGTTCATGGTTTGACTT+GGG 0.545373 6_1:-102700774 Msa0902820:CDS
AAACTCTGGCGAGCTATCGC+CGG 0.546085 6_1:-102701199 Msa0902820:CDS
AAATCCGACCACCCCGCTCT+CGG 0.548356 6_1:+102700374 None:intergenic
TTATCCGAGAGCGGGGTGGT+CGG 0.550098 6_1:-102700378 Msa0902820:CDS
ATGCGGCGATGAGTGTTACT+TGG 0.550397 6_1:-102700328 Msa0902820:CDS
CCACACTCAACCCCAAACTC+TGG 0.551845 6_1:-102701213 Msa0902820:CDS
TGTTCGGAAGTGAAGTAGCT+TGG 0.552094 6_1:+102701113 None:intergenic
GGAGACGGAGCAGAGAATGT+AGG 0.553295 6_1:+102701063 None:intergenic
GTTCACAAACCTACTCCAAC+CGG 0.553748 6_1:+102700703 None:intergenic
AGGGTTTACTACTTCCCTCA+AGG 0.555346 6_1:-102701145 Msa0902820:CDS
CGGCACTGTGTTGCTGCCAA+AGG 0.556216 6_1:+102698865 None:intergenic
GGCATTTGTTGACCACCGGT+TGG 0.557182 6_1:-102700718 Msa0902820:CDS
TTGTTTGTCTTATTGAAACC+GGG 0.560405 6_1:-102697670 Msa0902820:three_prime_UTR
CCGTCGTCAGCTTCAATCAC+CGG 0.562074 6_1:+102700944 None:intergenic
TGTGTTGAAAGCGGAGGTTG+TGG 0.562873 6_1:-102700351 Msa0902820:CDS
ATCAACAAATTCTGCAACGG+AGG 0.565435 6_1:+102700800 None:intergenic
CAAAGACGGAAGTTATCACC+TGG 0.565893 6_1:+102698899 None:intergenic
CCTGATCGTGGGGCTTGGAG+AGG 0.567198 6_1:-102700215 Msa0902820:CDS
AATGCCGGCGCGGCGTTCCA+CGG 0.569609 6_1:+102700735 None:intergenic
AGGCATTAACAACCCTCTTG+AGG 0.570796 6_1:-102698588 Msa0902820:CDS
TTTACCGTGGAACGCCGCGC+CGG 0.571717 6_1:-102700739 Msa0902820:CDS
AGATTGTGTCTTCCGATCTG+TGG 0.572758 6_1:-102700542 Msa0902820:CDS
ATTTCCTAGAGTACAATGGT+TGG 0.573247 6_1:-102697581 Msa0902820:three_prime_UTR
ACTAGAGGTGCAATGTTCAT+CGG 0.573435 6_1:-102700635 Msa0902820:CDS
GGGCTTGGAGAGGTTCACCT+TGG 0.573691 6_1:-102700205 Msa0902820:CDS
ACAAAATCTGTGCCAAAGGA+AGG 0.573965 6_1:+102698761 None:intergenic
AGGTACTTCTCCACGCAGAC+AGG 0.574972 6_1:-102697727 Msa0902820:three_prime_UTR
GGAAAGGGCGTATGAAGGGA+AGG 0.577013 6_1:+102699112 None:intergenic
ACAGGGGATGGGGTTTGAAG+TGG 0.577463 6_1:-102700405 Msa0902820:CDS
CCACCGTTGTTCGCATCAGA+AGG 0.582707 6_1:+102700887 None:intergenic
ATAAGAAGTAACGGAATCGA+AGG 0.582751 6_1:+102701313 None:intergenic
GTTCCGAATCGGAGTAGCGC+CGG 0.582911 6_1:-102700590 Msa0902820:CDS
CCAGAGTTTGGGGTTGAGTG+TGG 0.583941 6_1:+102701213 None:intergenic
TCAAATGGTACTGTTAGCAC+AGG 0.585129 6_1:-102698644 Msa0902820:CDS
AACGTTGGCAGTTCTCACTC+TGG 0.586514 6_1:-102698815 Msa0902820:CDS
GCTTGGTCCATGTGACCTTG+AGG 0.587306 6_1:+102701130 None:intergenic
TTGAAGCTGACGACGGTGAG+AGG 0.587325 6_1:-102700937 Msa0902820:CDS
CGATAGCTCGCCAGAGTTTG+GGG 0.589326 6_1:+102701203 None:intergenic
GTATCTGGGGTGTTAACTGA+TGG 0.592887 6_1:-102699067 Msa0902820:CDS
GCTTCAATCACCGGAATCCG+TGG 0.594157 6_1:+102700953 None:intergenic
TTTCTATATAAATCCAATAG+CGG 0.598851 6_1:+102697539 None:intergenic
CCGAACAAAATCTGTGCCAA+AGG 0.598966 6_1:+102698757 None:intergenic
CCAAATAGCCTCAACAGTTG+AGG 0.599347 6_1:-102698522 Msa0902820:CDS
AAGCTTAGCGAAAACCTCAT+CGG 0.601270 6_1:+102701012 None:intergenic
CCGAATCGGAGTAGCGCCGG+TGG 0.601878 6_1:-102700587 Msa0902820:CDS
AATGAGAATCAAAATGGCTG+TGG 0.607672 6_1:-102700297 Msa0902820:CDS
GGTTTCTGTTCCTGATCGTG+GGG 0.610340 6_1:-102700225 Msa0902820:CDS
GGTTGAATGAAAATGAGTGA+GGG 0.612055 6_1:+102701280 None:intergenic
AGGGTTCACTAATTCAACAA+TGG 0.612370 6_1:-102699020 Msa0902820:CDS
ATCGAATCAGCACAAAACCT+CGG 0.612548 6_1:+102700851 None:intergenic
GTAATCAACAAATTCTGCAA+CGG 0.612614 6_1:+102700797 None:intergenic
GAGTAAGTCGAATCCTCAAG+AGG 0.613064 6_1:+102698575 None:intergenic
CATACTGCAAGGTCAAAAGA+TGG 0.615276 6_1:+102697703 None:intergenic
AAGGACTAGAGGGGTATCTG+GGG 0.618552 6_1:-102699080 Msa0902820:CDS
CTACTTCTCACTCCACAGAT+CGG 0.620895 6_1:+102700530 None:intergenic
CATTGTTCAGAACTTTATTG+GGG 0.623018 6_1:-102697919 Msa0902820:intron
ACTGCAACTCAATGAAACCC+GGG 0.624047 6_1:-102698727 Msa0902820:CDS
TAATATTTCCTAGAGTACAA+TGG 0.626801 6_1:-102697585 Msa0902820:three_prime_UTR
CGGATCGGCGAGGAAATGAA+CGG 0.627023 6_1:+102701039 None:intergenic
TTGGCAGCAACACAGTGCCG+GGG 0.627502 6_1:-102698862 Msa0902820:CDS
TTAACAGTGAAATCATTCAA+CGG 0.636083 6_1:+102700980 None:intergenic
ATTGACGGAGGGGATTTGCA+CGG 0.638032 6_1:+102701171 None:intergenic
AAGGGCTGCAACGAAACTGA+AGG 0.639246 6_1:-102698608 Msa0902820:CDS
TAAGGACACTCACTTCAGAT+GGG 0.641287 6_1:+102697828 None:intergenic
GGATGAAGAAGAGAAGCTGG+TGG 0.642912 6_1:-102700504 Msa0902820:CDS
ATAGCACGCCTCAACTGTTG+AGG 0.645577 6_1:+102698514 None:intergenic
AGTAAGTCGAATCCTCAAGA+GGG 0.645578 6_1:+102698576 None:intergenic
TCTATATAAATCCAATAGCG+GGG 0.648813 6_1:+102697541 None:intergenic
AGGAGTTACCCATACAAAGA+CGG 0.649086 6_1:+102698885 None:intergenic
TGGTTGAATGAAAATGAGTG+AGG 0.649701 6_1:+102701279 None:intergenic
AAAGTACTGTAACTCAACAA+TGG 0.650302 6_1:+102698983 None:intergenic
GATCTGTGGAGTGAGAAGTA+GGG 0.650471 6_1:-102700528 Msa0902820:CDS
CCTTCTGATGCGAACAACGG+TGG 0.652015 6_1:-102700887 Msa0902820:CDS
TTGTTTCTGATAGATTACAT+GGG 0.652931 6_1:-102699203 Msa0902820:intron
AAAGAAGTTCCACCTGCCAA+GGG 0.653496 6_1:+102699143 None:intergenic
GAGTTTCGTCACATTTACCG+TGG 0.654474 6_1:-102700752 Msa0902820:CDS
GAAGGGGAAGTTGTCTCCGG+TGG 0.654859 6_1:-102700456 Msa0902820:CDS
AAAAGATGGTCCTGTCTGCG+TGG 0.657451 6_1:+102697717 None:intergenic
AAAGAAAACAGCATACTGCA+AGG 0.660360 6_1:+102697692 None:intergenic
TAAACCCTAGAATTGACGGA+GGG 0.662879 6_1:+102701160 None:intergenic
TGGTGTATTATCCGAGAGCG+GGG 0.665380 6_1:-102700385 Msa0902820:CDS
GGGGTGTTAACTGATGGAGA+TGG 0.666346 6_1:-102699061 Msa0902820:CDS
CGCCGATCCGAAAACCGATG+AGG 0.668414 6_1:-102701026 Msa0902820:CDS
GTGGTCAACAAATGCCGGCG+CGG 0.669526 6_1:+102700725 None:intergenic
ACTCCTTCTGATGCGAACAA+CGG 0.674390 6_1:-102700890 Msa0902820:CDS
AAGACACAATCTCGACACAT+CGG 0.674917 6_1:+102700553 None:intergenic
CACAAACCTACTCCAACCGG+TGG 0.675418 6_1:+102700706 None:intergenic
CGGCGGAAATGGCAGCACAG+GGG 0.678622 6_1:-102700421 Msa0902820:CDS
TGAACCCTGTGATAGAAAAG+GGG 0.678709 6_1:+102699035 None:intergenic
AGTGTTGCAAACTTCCAAGT+GGG 0.678749 6_1:-102699170 Msa0902820:CDS
CTGTGGAGTGAGAAGTAGGG+TGG 0.681702 6_1:-102700525 Msa0902820:CDS
CCCATTGAAAAGGACTAGAG+GGG 0.682404 6_1:-102699089 Msa0902820:CDS
TGTATTATCCGAGAGCGGGG+TGG 0.682628 6_1:-102700382 Msa0902820:CDS
AGTGGTGTATTATCCGAGAG+CGG 0.685012 6_1:-102700387 Msa0902820:CDS
AAGTGTTGCAAACTTCCAAG+TGG 0.685015 6_1:-102699171 Msa0902820:CDS
AAACCCTAGAATTGACGGAG+GGG 0.688106 6_1:+102701161 None:intergenic
GGATCCATACTATAATCCAA+CGG 0.690465 6_1:+102700821 None:intergenic
GAACTAATCGAACAGCACGA+CGG 0.693501 6_1:+102700609 None:intergenic
CATACATGAAGCATACGCCA+AGG 0.694470 6_1:+102700188 None:intergenic
ATCGGCGAGGAAATGAACGG+CGG 0.707383 6_1:+102701042 None:intergenic
CCGGTGATTGAAGCTGACGA+CGG 0.709175 6_1:-102700944 Msa0902820:CDS
TCCATACTATAATCCAACGG+AGG 0.710511 6_1:+102700824 None:intergenic
GTAAACCCTAGAATTGACGG+AGG 0.732924 6_1:+102701159 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAATATATATTTGAT+TGG + chr6_1:102698890-102698909 None:intergenic 10.0%
!!! ATAATTTGATCATATTGATT+AGG - chr6_1:102698766-102698785 Msa0902820:CDS 15.0%
!! AAATAGATTAAATATGAGTA+TGG - chr6_1:102698918-102698937 Msa0902820:CDS 15.0%
!!! CTATCTAAAATAACTAAAAT+TGG - chr6_1:102699626-102699645 Msa0902820:intron 15.0%
!! AGTATTCTTCATAAAAACAA+CGG + chr6_1:102698207-102698226 None:intergenic 20.0%
!! AATAAAGATTCAAAAGAAAG+AGG + chr6_1:102698700-102698719 None:intergenic 20.0%
!! TGTGCGTTATATAATAATTA+TGG - chr6_1:102698734-102698753 Msa0902820:CDS 20.0%
!!! TAAGTAAAAATCATTTTGCA+AGG - chr6_1:102698965-102698984 Msa0902820:CDS 20.0%
!! AATCTATCAGAAACAATAAA+TGG + chr6_1:102699652-102699671 None:intergenic 20.0%
!!! TTTTTTCCTTGAGTTTTATA+TGG - chr6_1:102700651-102700670 Msa0902820:CDS 20.0%
!! GTCTAATACAAGAAAATAAA+TGG - chr6_1:102700906-102700925 Msa0902820:CDS 20.0%
!! AAGTTCAATGGATAAAAAAA+AGG - chr6_1:102700993-102701012 Msa0902820:CDS 20.0%
!! AGTTCAATGGATAAAAAAAA+GGG - chr6_1:102700994-102701013 Msa0902820:CDS 20.0%
!! ATAAGATGTTCAACAATATA+AGG + chr6_1:102701052-102701071 None:intergenic 20.0%
!!! ATTAATTTTGTTGCTTACTT+TGG - chr6_1:102701096-102701115 Msa0902820:CDS 20.0%
!!! TTAATTTTGTTGCTTACTTT+GGG - chr6_1:102701097-102701116 Msa0902820:CDS 20.0%
!! GAAACTAAGTATGTAATATT+TGG - chr6_1:102701218-102701237 Msa0902820:CDS 20.0%
!! TTTCTATATAAATCCAATAG+CGG + chr6_1:102701323-102701342 None:intergenic 20.0%
!! TTTTCGAACATAAGAAGTAA+CGG + chr6_1:102697558-102697577 None:intergenic 25.0%
! TTAACAGTGAAATCATTCAA+CGG + chr6_1:102697882-102697901 None:intergenic 25.0%
!! ATTTCACTGTTAATTTTCCA+CGG - chr6_1:102697889-102697908 Msa0902820:three_prime_UTR 25.0%
!! GTTTTTATGAAGAATACTAG+AGG - chr6_1:102698209-102698228 Msa0902820:intron 25.0%
!! AAACATGCATTTTATCTAGT+TGG - chr6_1:102698789-102698808 Msa0902820:CDS 25.0%
!!! ACTTAATGTTGCTTTCAAAA+TGG - chr6_1:102698857-102698876 Msa0902820:CDS 25.0%
! AGTGTTTATCATCTGTTTAA+AGG - chr6_1:102699070-102699089 Msa0902820:CDS 25.0%
! CAACAAATCAAATGTTAACA+TGG + chr6_1:102699111-102699130 None:intergenic 25.0%
! TTTGTTGAATTCAGGAAATT+TGG - chr6_1:102699192-102699211 Msa0902820:CDS 25.0%
!! TAGAACATAGAAGTGATTTT+AGG - chr6_1:102699228-102699247 Msa0902820:intron 25.0%
!! GTAAAATTTTGTGAAACCAA+TGG - chr6_1:102699255-102699274 Msa0902820:intron 25.0%
! AAAAAGGAAACGAAAAAACA+AGG + chr6_1:102699351-102699370 None:intergenic 25.0%
!! TGATTTTTCTATATCTGACT+TGG - chr6_1:102699480-102699499 Msa0902820:intron 25.0%
!!! ATTGTTTCTGATAGATTACA+TGG - chr6_1:102699655-102699674 Msa0902820:intron 25.0%
!!! TTGTTTCTGATAGATTACAT+GGG - chr6_1:102699656-102699675 Msa0902820:intron 25.0%
! AAAGTTGGAAAAACTTGAAA+CGG + chr6_1:102699940-102699959 None:intergenic 25.0%
!!! AGTGGATTAATTGATAACAT+AGG - chr6_1:102700623-102700642 Msa0902820:CDS 25.0%
!! ATTAATTGATAACATAGGTC+TGG - chr6_1:102700628-102700647 Msa0902820:CDS 25.0%
! AAAAGTAAATGAAAATGCAG+AGG - chr6_1:102700787-102700806 Msa0902820:CDS 25.0%
! AAAGTAAATGAAAATGCAGA+GGG - chr6_1:102700788-102700807 Msa0902820:CDS 25.0%
!!! AGTATTGATTTTCTGTTATG+GGG + chr6_1:102700830-102700849 None:intergenic 25.0%
!!! GAGTATTGATTTTCTGTTAT+GGG + chr6_1:102700831-102700850 None:intergenic 25.0%
! TTCATTGTTCAGAACTTTAT+TGG - chr6_1:102700938-102700957 Msa0902820:CDS 25.0%
! TCATTGTTCAGAACTTTATT+GGG - chr6_1:102700939-102700958 Msa0902820:CDS 25.0%
! GTTCAATGGATAAAAAAAAG+GGG - chr6_1:102700995-102701014 Msa0902820:CDS 25.0%
! GCAACAAAATTAATTGAACA+TGG + chr6_1:102701090-102701109 None:intergenic 25.0%
!! TTTGTTTGTCTTATTGAAAC+CGG - chr6_1:102701188-102701207 Msa0902820:CDS 25.0%
! TAATATTTCCTAGAGTACAA+TGG - chr6_1:102701274-102701293 Msa0902820:CDS 25.0%
! TTCTATATAAATCCAATAGC+GGG + chr6_1:102701322-102701341 None:intergenic 25.0%
GTAATCAACAAATTCTGCAA+CGG + chr6_1:102698065-102698084 None:intergenic 30.0%
! TTGTTGATTACTGATGTTCA+TGG - chr6_1:102698074-102698093 Msa0902820:intron 30.0%
AATGCTATATTTGCATGAAG+AGG - chr6_1:102699019-102699038 Msa0902820:CDS 30.0%
TTGAATTCAGGAAATTTGGT+TGG - chr6_1:102699196-102699215 Msa0902820:intron 30.0%
TGAATTCAGGAAATTTGGTT+GGG - chr6_1:102699197-102699216 Msa0902820:intron 30.0%
AAACCAATGGATACCATTAT+TGG - chr6_1:102699268-102699287 Msa0902820:intron 30.0%
AACCAATGGATACCATTATT+GGG - chr6_1:102699269-102699288 Msa0902820:intron 30.0%
AATCTCATAAGTCCCAATAA+TGG + chr6_1:102699284-102699303 None:intergenic 30.0%
!!! CGTTTCCTTTTTTTGAAATC+TGG - chr6_1:102699359-102699378 Msa0902820:intron 30.0%
GCAATCCAGATTTCAAAAAA+AGG + chr6_1:102699367-102699386 None:intergenic 30.0%
AGACATAAGAAATCAAAAGC+AGG + chr6_1:102699517-102699536 None:intergenic 30.0%
!! GATTCTTCGTATCATTTTTG+TGG - chr6_1:102699537-102699556 Msa0902820:intron 30.0%
!! AAAGTACTGTAACTCAACAA+TGG + chr6_1:102699879-102699898 None:intergenic 30.0%
!! GTTGAAAAAGATTTTAACCC+CGG + chr6_1:102700017-102700036 None:intergenic 30.0%
!!! GGGGTTAAAATCTTTTTCAA+CGG - chr6_1:102700016-102700035 Msa0902820:intron 30.0%
AGTGAATCAAAGTTCTCAAT+AGG - chr6_1:102700428-102700447 Msa0902820:CDS 30.0%
GTGAATCAAAGTTCTCAATA+GGG - chr6_1:102700429-102700448 Msa0902820:CDS 30.0%
!!! GGTATTTTTAGCTGTCTTAT+TGG - chr6_1:102700530-102700549 Msa0902820:CDS 30.0%
GTTTGTTCTAATCAAGTGAT+GGG - chr6_1:102700572-102700591 Msa0902820:CDS 30.0%
TCATGACCATATAAAACTCA+AGG + chr6_1:102700660-102700679 None:intergenic 30.0%
! CTTTCTGTCAATATTTTCCT+AGG + chr6_1:102700733-102700752 None:intergenic 30.0%
TTGACAGAAAGTAGAGAAAA+AGG - chr6_1:102700742-102700761 Msa0902820:CDS 30.0%
TGACAGAAAGTAGAGAAAAA+GGG - chr6_1:102700743-102700762 Msa0902820:CDS 30.0%
!!! CGAGTATTGATTTTCTGTTA+TGG + chr6_1:102700832-102700851 None:intergenic 30.0%
ATGAGTATTCTCATGTGAAT+AGG - chr6_1:102700864-102700883 Msa0902820:CDS 30.0%
CATTGTTCAGAACTTTATTG+GGG - chr6_1:102700940-102700959 Msa0902820:CDS 30.0%
! TTGTTTGTCTTATTGAAACC+GGG - chr6_1:102701189-102701208 Msa0902820:CDS 30.0%
ATACTTAGTTTCATTGTTCC+CGG + chr6_1:102701210-102701229 None:intergenic 30.0%
TCTATATAAATCCAATAGCG+GGG + chr6_1:102701321-102701340 None:intergenic 30.0%
! ATAAGAAGTAACGGAATCGA+AGG + chr6_1:102697549-102697568 None:intergenic 35.0%
GGTTGAATGAAAATGAGTGA+GGG + chr6_1:102697582-102697601 None:intergenic 35.0%
TGGTTGAATGAAAATGAGTG+AGG + chr6_1:102697583-102697602 None:intergenic 35.0%
GTAGTAAACCCTAGAATTGA+CGG + chr6_1:102697706-102697725 None:intergenic 35.0%
! TGTTAATTTTCCACGGATTC+CGG - chr6_1:102697896-102697915 Msa0902820:three_prime_UTR 35.0%
GGATCCATACTATAATCCAA+CGG + chr6_1:102698041-102698060 None:intergenic 35.0%
! TGATGTTCATGGTTTGACTT+GGG - chr6_1:102698085-102698104 Msa0902820:intron 35.0%
TCCTGGAATGAGAATCAAAA+TGG - chr6_1:102698556-102698575 Msa0902820:CDS 35.0%
AATGAGAATCAAAATGGCTG+TGG - chr6_1:102698562-102698581 Msa0902820:CDS 35.0%
! TTTGACTGAGAATGCTTTTG+TGG - chr6_1:102698819-102698838 Msa0902820:CDS 35.0%
! GTTGCTTTCAAAATGGAATG+TGG - chr6_1:102698864-102698883 Msa0902820:CDS 35.0%
TTTGCATGAAGAGGTTGAAA+TGG - chr6_1:102699028-102699047 Msa0902820:CDS 35.0%
TTGCATGAAGAGGTTGAAAT+GGG - chr6_1:102699029-102699048 Msa0902820:CDS 35.0%
TTGTTCAGTTGCTTCTGTTA+CGG - chr6_1:102699128-102699147 Msa0902820:CDS 35.0%
TTCCTGAATTCAACAAAGCA+GGG + chr6_1:102699189-102699208 None:intergenic 35.0%
TTTCCTGAATTCAACAAAGC+AGG + chr6_1:102699190-102699209 None:intergenic 35.0%
AGGAAACGAAAAAACAAGGA+AGG + chr6_1:102699347-102699366 None:intergenic 35.0%
AGGGTTCACTAATTCAACAA+TGG - chr6_1:102699839-102699858 Msa0902820:intron 35.0%
GGGTTCACTAATTCAACAAT+GGG - chr6_1:102699840-102699859 Msa0902820:intron 35.0%
! TCAAGTTTTTCCAACTTTCC+AGG - chr6_1:102699942-102699961 Msa0902820:intron 35.0%
TGATAACTTCCGTCTTTGTA+TGG - chr6_1:102699965-102699984 Msa0902820:intron 35.0%
GATAACTTCCGTCTTTGTAT+GGG - chr6_1:102699966-102699985 Msa0902820:intron 35.0%
! TTTTCAACGGATCTAAACGT+TGG - chr6_1:102700029-102700048 Msa0902820:intron 35.0%
ACCATTTGAACCACTTTCAA+CGG + chr6_1:102700204-102700223 None:intergenic 35.0%
! AGTAGTTTGTGTTAGCTCAA+TGG - chr6_1:102700509-102700528 Msa0902820:CDS 35.0%
! TAGCTGTCTTATTGGAATGT+TGG - chr6_1:102700538-102700557 Msa0902820:CDS 35.0%
! TTGGAATGTTGGCATGTTTT+AGG - chr6_1:102700549-102700568 Msa0902820:CDS 35.0%
! TGGAATGTTGGCATGTTTTA+GGG - chr6_1:102700550-102700569 Msa0902820:CDS 35.0%
! GGTTTGTTCTAATCAAGTGA+TGG - chr6_1:102700571-102700590 Msa0902820:CDS 35.0%
TGTGCATATATTCTCACAAG+TGG - chr6_1:102700605-102700624 Msa0902820:CDS 35.0%
TGATATATGATGCCTGTTTC+TGG - chr6_1:102700677-102700696 Msa0902820:CDS 35.0%
AAAAAAGATGCAGCTTCTCA+TGG - chr6_1:102700966-102700985 Msa0902820:CDS 35.0%
AAAGAAAACAGCATACTGCA+AGG + chr6_1:102701170-102701189 None:intergenic 35.0%
ATTTCCTAGAGTACAATGGT+TGG - chr6_1:102701278-102701297 Msa0902820:CDS 35.0%
!!! TTGAGTGTGGTTGCGTTTTT+TGG + chr6_1:102697636-102697655 None:intergenic 40.0%
TAAACCCTAGAATTGACGGA+GGG + chr6_1:102697702-102697721 None:intergenic 40.0%
AGAAGAGGTGAGAGATTGTT+CGG + chr6_1:102697765-102697784 None:intergenic 40.0%
AAGCTTAGCGAAAACCTCAT+CGG + chr6_1:102697850-102697869 None:intergenic 40.0%
ATCGAATCAGCACAAAACCT+CGG + chr6_1:102698011-102698030 None:intergenic 40.0%
! TGATTCGATTTTTCCTCCGT+TGG - chr6_1:102698022-102698041 Msa0902820:intron 40.0%
TCCTCCGTTGGATTATAGTA+TGG - chr6_1:102698034-102698053 Msa0902820:intron 40.0%
TCCATACTATAATCCAACGG+AGG + chr6_1:102698038-102698057 None:intergenic 40.0%
ATCAACAAATTCTGCAACGG+AGG + chr6_1:102698062-102698081 None:intergenic 40.0%
CTGATGTTCATGGTTTGACT+TGG - chr6_1:102698084-102698103 Msa0902820:intron 40.0%
! ACTAGAGGTGCAATGTTCAT+CGG - chr6_1:102698224-102698243 Msa0902820:intron 40.0%
! CTGTTCGATTAGTTCCGAAT+CGG - chr6_1:102698258-102698277 Msa0902820:intron 40.0%
AAGACACAATCTCGACACAT+CGG + chr6_1:102698309-102698328 None:intergenic 40.0%
! GTCGGATTTTGTGTTGAAAG+CGG - chr6_1:102698499-102698518 Msa0902820:exon 40.0%
!!! GCCATTTTGATTCTCATTCC+AGG + chr6_1:102698560-102698579 None:intergenic 40.0%
ATGATTCTTCCAGGACTACT+TGG - chr6_1:102698591-102698610 Msa0902820:CDS 40.0%
TGAAGAGGTTGAAATGGGTA+AGG - chr6_1:102699034-102699053 Msa0902820:CDS 40.0%
! TACCCTGCTTTGTTGAATTC+AGG - chr6_1:102699184-102699203 Msa0902820:CDS 40.0%
TTCAGGAAATTTGGTTGGGT+TGG - chr6_1:102699201-102699220 Msa0902820:intron 40.0%
GTCCCAATAATGGTATCCAT+TGG + chr6_1:102699274-102699293 None:intergenic 40.0%
TTGGAAGTTTGCAACACTTC+AGG + chr6_1:102699687-102699706 None:intergenic 40.0%
! AAGTGTTGCAAACTTCCAAG+TGG - chr6_1:102699688-102699707 Msa0902820:intron 40.0%
AGTGTTGCAAACTTCCAAGT+GGG - chr6_1:102699689-102699708 Msa0902820:intron 40.0%
TGAACCCTGTGATAGAAAAG+GGG + chr6_1:102699827-102699846 None:intergenic 40.0%
GTGAACCCTGTGATAGAAAA+GGG + chr6_1:102699828-102699847 None:intergenic 40.0%
AGTGAACCCTGTGATAGAAA+AGG + chr6_1:102699829-102699848 None:intergenic 40.0%
! AGTTACAGTACTTTTCCTGC+TGG - chr6_1:102699885-102699904 Msa0902820:intron 40.0%
AACGGAAAATAGATCATGCC+TGG + chr6_1:102699922-102699941 None:intergenic 40.0%
GAAGTTATCACCTGGAAAGT+TGG + chr6_1:102699955-102699974 None:intergenic 40.0%
AGGAGTTACCCATACAAAGA+CGG + chr6_1:102699977-102699996 None:intergenic 40.0%
CTTTGTATGGGTAACTCCTT+TGG - chr6_1:102699978-102699997 Msa0902820:intron 40.0%
ACAAAATCTGTGCCAAAGGA+AGG + chr6_1:102700101-102700120 None:intergenic 40.0%
! CCTTTGGCACAGATTTTGTT+CGG - chr6_1:102700102-102700121 Msa0902820:intron 40.0%
AACTGCAACTCAATGAAACC+CGG - chr6_1:102700131-102700150 Msa0902820:intron 40.0%
CCAAATAGCTGAAACGTTAC+AGG + chr6_1:102700158-102700177 None:intergenic 40.0%
CCTGTAACGTTTCAGCTATT+TGG - chr6_1:102700155-102700174 Msa0902820:intron 40.0%
CCATTTGAACCACTTTCAAC+GGG + chr6_1:102700203-102700222 None:intergenic 40.0%
TCAAATGGTACTGTTAGCAC+AGG - chr6_1:102700215-102700234 Msa0902820:CDS 40.0%
AGTAAGTCGAATCCTCAAGA+GGG + chr6_1:102700286-102700305 None:intergenic 40.0%
CTTACTCAAAATTGCTCGAC+AGG - chr6_1:102700300-102700319 Msa0902820:CDS 40.0%
ATGCACATAAGTAGCTGTAC+AGG - chr6_1:102700391-102700410 Msa0902820:CDS 40.0%
!!! TTTTGGTTTGCACCAGAAAC+AGG + chr6_1:102700692-102700711 None:intergenic 40.0%
!! GTGTTTTTGCTCTGTGGTTT+TGG + chr6_1:102700709-102700728 None:intergenic 40.0%
! TTTTCTGTTATGGGGTAGCA+GGG + chr6_1:102700822-102700841 None:intergenic 40.0%
! ATTTTCTGTTATGGGGTAGC+AGG + chr6_1:102700823-102700842 None:intergenic 40.0%
TCTCATGGCATGAAGTTCAA+TGG - chr6_1:102700981-102701000 Msa0902820:CDS 40.0%
TAAGGACACTCACTTCAGAT+GGG + chr6_1:102701034-102701053 None:intergenic 40.0%
ATAAGGACACTCACTTCAGA+TGG + chr6_1:102701035-102701054 None:intergenic 40.0%
CATACTGCAAGGTCAAAAGA+TGG + chr6_1:102701159-102701178 None:intergenic 40.0%
CTAACCAACCATTGTACTCT+AGG + chr6_1:102701285-102701304 None:intergenic 40.0%
AGTACTTGGCGGTTCATGAT+TGG + chr6_1:102697603-102697622 None:intergenic 45.0%
!!! GTGGTTGCGTTTTTTGGAGA+CGG + chr6_1:102697630-102697649 None:intergenic 45.0%
AAATCCCCTCCGTCAATTCT+AGG - chr6_1:102697694-102697713 Msa0902820:three_prime_UTR 45.0%
AATCCCCTCCGTCAATTCTA+GGG - chr6_1:102697695-102697714 Msa0902820:three_prime_UTR 45.0%
AAACCCTAGAATTGACGGAG+GGG + chr6_1:102697701-102697720 None:intergenic 45.0%
GTAAACCCTAGAATTGACGG+AGG + chr6_1:102697703-102697722 None:intergenic 45.0%
AGGGTTTACTACTTCCCTCA+AGG - chr6_1:102697714-102697733 Msa0902820:three_prime_UTR 45.0%
TGTTCGGAAGTGAAGTAGCT+TGG + chr6_1:102697749-102697768 None:intergenic 45.0%
!!! AACCTCATCGGTTTTCGGAT+CGG + chr6_1:102697838-102697857 None:intergenic 45.0%
!!! GCGAAAACCTCATCGGTTTT+CGG + chr6_1:102697843-102697862 None:intergenic 45.0%
ACTCCTTCTGATGCGAACAA+CGG - chr6_1:102697969-102697988 Msa0902820:intron 45.0%
GAGTTTCGTCACATTTACCG+TGG - chr6_1:102698107-102698126 Msa0902820:intron 45.0%
GTTCACAAACCTACTCCAAC+CGG + chr6_1:102698159-102698178 None:intergenic 45.0%
!! AACGCTAAGAAGCTTGTTGC+TGG - chr6_1:102698176-102698195 Msa0902820:intron 45.0%
GAACTAATCGAACAGCACGA+CGG + chr6_1:102698253-102698272 None:intergenic 45.0%
AGATTGTGTCTTCCGATCTG+TGG - chr6_1:102698317-102698336 Msa0902820:intron 45.0%
CTACTTCTCACTCCACAGAT+CGG + chr6_1:102698332-102698351 None:intergenic 45.0%
GATCTGTGGAGTGAGAAGTA+GGG - chr6_1:102698331-102698350 Msa0902820:intron 45.0%
AGTGGTGTATTATCCGAGAG+CGG - chr6_1:102698472-102698491 Msa0902820:three_prime_UTR 45.0%
! GGATTTTGTGTTGAAAGCGG+AGG - chr6_1:102698502-102698521 Msa0902820:exon 45.0%
!! ATGAGTGTTACTTGGTGTCC+TGG - chr6_1:102698539-102698558 Msa0902820:CDS 45.0%
TGGAGACTGATGATTCTTCC+AGG - chr6_1:102698582-102698601 Msa0902820:CDS 45.0%
TCCAGGACTACTTGGTTTCA+AGG - chr6_1:102698599-102698618 Msa0902820:CDS 45.0%
ACCTTGAAACCAAGTAGTCC+TGG + chr6_1:102698603-102698622 None:intergenic 45.0%
GTTTCAAGGTGTAGTGTCTC+AGG - chr6_1:102698613-102698632 Msa0902820:CDS 45.0%
AGGTTTCTGTTCCTGATCGT+GGG - chr6_1:102698633-102698652 Msa0902820:CDS 45.0%
CATACATGAAGCATACGCCA+AGG + chr6_1:102698674-102698693 None:intergenic 45.0%
CTTGGCGTATGCTTCATGTA+TGG - chr6_1:102698672-102698691 Msa0902820:CDS 45.0%
TGAGTATGGAAGAGTTGCTG+TGG - chr6_1:102698932-102698951 Msa0902820:CDS 45.0%
AAAGAAGTTCCACCTGCCAA+GGG + chr6_1:102699719-102699738 None:intergenic 45.0%
! GTCCTTTTCAATGGGGGAAA+GGG + chr6_1:102699765-102699784 None:intergenic 45.0%
! AGTCCTTTTCAATGGGGGAA+AGG + chr6_1:102699766-102699785 None:intergenic 45.0%
! CCTCTAGTCCTTTTCAATGG+GGG + chr6_1:102699771-102699790 None:intergenic 45.0%
! CCCTCTAGTCCTTTTCAATG+GGG + chr6_1:102699772-102699791 None:intergenic 45.0%
CCCCATTGAAAAGGACTAGA+GGG - chr6_1:102699769-102699788 Msa0902820:intron 45.0%
! CCCCTCTAGTCCTTTTCAAT+GGG + chr6_1:102699773-102699792 None:intergenic 45.0%
CCCATTGAAAAGGACTAGAG+GGG - chr6_1:102699770-102699789 Msa0902820:intron 45.0%
! ACCCCTCTAGTCCTTTTCAA+TGG + chr6_1:102699774-102699793 None:intergenic 45.0%
!! AAAAGGACTAGAGGGGTATC+TGG - chr6_1:102699777-102699796 Msa0902820:intron 45.0%
!! AAAGGACTAGAGGGGTATCT+GGG - chr6_1:102699778-102699797 Msa0902820:intron 45.0%
! GTATCTGGGGTGTTAACTGA+TGG - chr6_1:102699792-102699811 Msa0902820:intron 45.0%
! GAGACCCCTTTTCTATCACA+GGG - chr6_1:102699820-102699839 Msa0902820:intron 45.0%
CAAAGACGGAAGTTATCACC+TGG + chr6_1:102699963-102699982 None:intergenic 45.0%
CAAAGGAAGGCAAACTACTC+TGG + chr6_1:102700088-102700107 None:intergenic 45.0%
! CAGAGTAGTTTGCCTTCCTT+TGG - chr6_1:102700086-102700105 Msa0902820:intron 45.0%
CCGAACAAAATCTGTGCCAA+AGG + chr6_1:102700105-102700124 None:intergenic 45.0%
ACTGCAACTCAATGAAACCC+GGG - chr6_1:102700132-102700151 Msa0902820:intron 45.0%
CCCGTTGAAAGTGGTTCAAA+TGG - chr6_1:102700200-102700219 Msa0902820:CDS 45.0%
ACAGGAGATGACAGCAGTAA+GGG - chr6_1:102700233-102700252 Msa0902820:CDS 45.0%
AGGCATTAACAACCCTCTTG+AGG - chr6_1:102700271-102700290 Msa0902820:CDS 45.0%
GAGTAAGTCGAATCCTCAAG+AGG + chr6_1:102700287-102700306 None:intergenic 45.0%
AAATTGCTCGACAGGCTTGA+TGG - chr6_1:102700308-102700327 Msa0902820:CDS 45.0%
CCTCAACTGTTGAGGCTATT+TGG + chr6_1:102700340-102700359 None:intergenic 45.0%
CCAAATAGCCTCAACAGTTG+AGG - chr6_1:102700337-102700356 Msa0902820:CDS 45.0%
!!! CTAGGAGTGTTTTTGCTCTG+TGG + chr6_1:102700715-102700734 None:intergenic 45.0%
CACAGAGCAAAAACACTCCT+AGG - chr6_1:102700713-102700732 Msa0902820:CDS 45.0%
! ACTTTGGGTTCTTTCCATGC+AGG - chr6_1:102701112-102701131 Msa0902820:CDS 45.0%
TCTCAATTTGACCCCGCTAT+TGG - chr6_1:102701307-102701326 Msa0902820:exon 45.0%
TTGGAGACGGTGGTAGTACT+TGG + chr6_1:102697617-102697636 None:intergenic 50.0%
!!! GTTGCGTTTTTTGGAGACGG+TGG + chr6_1:102697627-102697646 None:intergenic 50.0%
ATTGACGGAGGGGATTTGCA+CGG + chr6_1:102697691-102697710 None:intergenic 50.0%
CTACTTCCCTCAAGGTCACA+TGG - chr6_1:102697722-102697741 Msa0902820:three_prime_UTR 50.0%
CTTGGTCCATGTGACCTTGA+GGG + chr6_1:102697731-102697750 None:intergenic 50.0%
TAGGGACGAGAGAGAAGAAG+AGG + chr6_1:102697780-102697799 None:intergenic 50.0%
GAGACGGAGCAGAGAATGTA+GGG + chr6_1:102697798-102697817 None:intergenic 50.0%
!!! GTGGTGGATTTTCTGTTCCG+AGG - chr6_1:102697991-102698010 Msa0902820:intron 50.0%
AACCGGTGGTCAACAAATGC+CGG + chr6_1:102698142-102698161 None:intergenic 50.0%
CGATCTGTGGAGTGAGAAGT+AGG - chr6_1:102698330-102698349 Msa0902820:intron 50.0%
GGTGGATGAAGAAGAGAAGC+TGG - chr6_1:102698352-102698371 Msa0902820:intron 50.0%
GGATGAAGAAGAGAAGCTGG+TGG - chr6_1:102698355-102698374 Msa0902820:intron 50.0%
! AGAGAAGCTGGTGGATGAGA+AGG - chr6_1:102698364-102698383 Msa0902820:intron 50.0%
!!! TGGATGAGAAGGCGTTTTCG+AGG - chr6_1:102698375-102698394 Msa0902820:intron 50.0%
GTGGTGTATTATCCGAGAGC+GGG - chr6_1:102698473-102698492 Msa0902820:three_prime_UTR 50.0%
TGGTGTATTATCCGAGAGCG+GGG - chr6_1:102698474-102698493 Msa0902820:three_prime_UTR 50.0%
TGTGTTGAAAGCGGAGGTTG+TGG - chr6_1:102698508-102698527 Msa0902820:CDS 50.0%
! ATGCGGCGATGAGTGTTACT+TGG - chr6_1:102698531-102698550 Msa0902820:CDS 50.0%
CAGGTTTCTGTTCCTGATCG+TGG - chr6_1:102698632-102698651 Msa0902820:CDS 50.0%
GGTTTCTGTTCCTGATCGTG+GGG - chr6_1:102698634-102698653 Msa0902820:CDS 50.0%
GAAAGAAGTTCCACCTGCCA+AGG + chr6_1:102699720-102699739 None:intergenic 50.0%
CCCCCATTGAAAAGGACTAG+AGG - chr6_1:102699768-102699787 Msa0902820:intron 50.0%
!! AAGGACTAGAGGGGTATCTG+GGG - chr6_1:102699779-102699798 Msa0902820:intron 50.0%
! GGGGTGTTAACTGATGGAGA+TGG - chr6_1:102699798-102699817 Msa0902820:intron 50.0%
! GGAGACCCCTTTTCTATCAC+AGG - chr6_1:102699819-102699838 Msa0902820:intron 50.0%
! TACTTTTCCTGCTGGCATGC+AGG - chr6_1:102699893-102699912 Msa0902820:intron 50.0%
! ACTTTTCCTGCTGGCATGCA+GGG - chr6_1:102699894-102699913 Msa0902820:intron 50.0%
AACGTTGGCAGTTCTCACTC+TGG - chr6_1:102700044-102700063 Msa0902820:intron 50.0%
TAGCTGAAACGTTACAGGCC+CGG + chr6_1:102700153-102700172 None:intergenic 50.0%
ACAGAACAGCCCGTTGAAAG+TGG - chr6_1:102700191-102700210 Msa0902820:intron 50.0%
CACAGGAGATGACAGCAGTA+AGG - chr6_1:102700232-102700251 Msa0902820:CDS 50.0%
AAGGGCTGCAACGAAACTGA+AGG - chr6_1:102700251-102700270 Msa0902820:CDS 50.0%
CTGTTGAGGCTATTTGGCAC+TGG + chr6_1:102700334-102700353 None:intergenic 50.0%
ATAGCACGCCTCAACTGTTG+AGG + chr6_1:102700348-102700367 None:intergenic 50.0%
AAAAGATGGTCCTGTCTGCG+TGG + chr6_1:102701145-102701164 None:intergenic 50.0%
GAGACGGTGGTAGTACTTGG+CGG + chr6_1:102697614-102697633 None:intergenic 55.0%
! CCAGAGTTTGGGGTTGAGTG+TGG + chr6_1:102697649-102697668 None:intergenic 55.0%
CCACACTCAACCCCAAACTC+TGG - chr6_1:102697646-102697665 Msa0902820:three_prime_UTR 55.0%
CGATAGCTCGCCAGAGTTTG+GGG + chr6_1:102697659-102697678 None:intergenic 55.0%
GCGATAGCTCGCCAGAGTTT+GGG + chr6_1:102697660-102697679 None:intergenic 55.0%
AAACTCTGGCGAGCTATCGC+CGG - chr6_1:102697660-102697679 Msa0902820:three_prime_UTR 55.0%
GCTTGGTCCATGTGACCTTG+AGG + chr6_1:102697732-102697751 None:intergenic 55.0%
GGAGACGGAGCAGAGAATGT+AGG + chr6_1:102697799-102697818 None:intergenic 55.0%
GAGGAAATGAACGGCGGAGA+CGG + chr6_1:102697814-102697833 None:intergenic 55.0%
ATCGGCGAGGAAATGAACGG+CGG + chr6_1:102697820-102697839 None:intergenic 55.0%
CGGATCGGCGAGGAAATGAA+CGG + chr6_1:102697823-102697842 None:intergenic 55.0%
GCTTCAATCACCGGAATCCG+TGG + chr6_1:102697909-102697928 None:intergenic 55.0%
CCGTCGTCAGCTTCAATCAC+CGG + chr6_1:102697918-102697937 None:intergenic 55.0%
CCGGTGATTGAAGCTGACGA+CGG - chr6_1:102697915-102697934 Msa0902820:intron 55.0%
TTGAAGCTGACGACGGTGAG+AGG - chr6_1:102697922-102697941 Msa0902820:intron 55.0%
CCACCGTTGTTCGCATCAGA+AGG + chr6_1:102697975-102697994 None:intergenic 55.0%
CCTTCTGATGCGAACAACGG+TGG - chr6_1:102697972-102697991 Msa0902820:intron 55.0%
TCTGATGCGAACAACGGTGG+TGG - chr6_1:102697975-102697994 Msa0902820:intron 55.0%
! GGCATTTGTTGACCACCGGT+TGG - chr6_1:102698141-102698160 Msa0902820:intron 55.0%
! TGTTGACCACCGGTTGGAGT+AGG - chr6_1:102698147-102698166 Msa0902820:intron 55.0%
CACAAACCTACTCCAACCGG+TGG + chr6_1:102698156-102698175 None:intergenic 55.0%
CTGTGGAGTGAGAAGTAGGG+TGG - chr6_1:102698334-102698353 Msa0902820:intron 55.0%
!!! GAGAAGGCGTTTTCGAGGCA+CGG - chr6_1:102698380-102698399 Msa0902820:intron 55.0%
!!! AGAAGGCGTTTTCGAGGCAC+GGG - chr6_1:102698381-102698400 Msa0902820:intron 55.0%
GAAATGGCAGCACAGGGGAT+GGG - chr6_1:102698443-102698462 Msa0902820:intron 55.0%
AAATGGCAGCACAGGGGATG+GGG - chr6_1:102698444-102698463 Msa0902820:intron 55.0%
ACAGGGGATGGGGTTTGAAG+TGG - chr6_1:102698454-102698473 Msa0902820:intron 55.0%
TGTATTATCCGAGAGCGGGG+TGG - chr6_1:102698477-102698496 Msa0902820:three_prime_UTR 55.0%
GAAAGCGGAGGTTGTGGATG+CGG - chr6_1:102698514-102698533 Msa0902820:CDS 55.0%
! GGAAAGGGCGTATGAAGGGA+AGG + chr6_1:102699750-102699769 None:intergenic 55.0%
! TGGGGGAAAGGGCGTATGAA+GGG + chr6_1:102699754-102699773 None:intergenic 55.0%
! ATGGGGGAAAGGGCGTATGA+AGG + chr6_1:102699755-102699774 None:intergenic 55.0%
CGCCCTTTCCCCCATTGAAA+AGG - chr6_1:102699760-102699779 Msa0902820:intron 55.0%
CTTTGGCAGCAACACAGTGC+CGG - chr6_1:102699995-102700014 Msa0902820:intron 55.0%
TTTGGCAGCAACACAGTGCC+GGG - chr6_1:102699996-102700015 Msa0902820:intron 55.0%
!! GGCAAACTACTCTGGCTCTC+TGG + chr6_1:102700080-102700099 None:intergenic 55.0%
AGCTGAAACGTTACAGGCCC+GGG + chr6_1:102700152-102700171 None:intergenic 55.0%
!! TGCGTGGAGAAGTACCTGCA+TGG + chr6_1:102701129-102701148 None:intergenic 55.0%
AGGTACTTCTCCACGCAGAC+AGG - chr6_1:102701132-102701151 Msa0902820:CDS 55.0%
GGCGATAGCTCGCCAGAGTT+TGG + chr6_1:102697661-102697680 None:intergenic 60.0%
!!! CATCGGTTTTCGGATCGGCG+AGG + chr6_1:102697833-102697852 None:intergenic 60.0%
CGCCGATCCGAAAACCGATG+AGG - chr6_1:102697833-102697852 Msa0902820:intron 60.0%
GTGGTCAACAAATGCCGGCG+CGG + chr6_1:102698137-102698156 None:intergenic 60.0%
! CGCCGGCATTTGTTGACCAC+CGG - chr6_1:102698137-102698156 Msa0902820:intron 60.0%
GTTCCGAATCGGAGTAGCGC+CGG - chr6_1:102698269-102698288 Msa0902820:intron 60.0%
ATCGGAGCAAACACCGCCAC+CGG + chr6_1:102698291-102698310 None:intergenic 60.0%
!! GCGTTTTCGAGGCACGGGAA+GGG - chr6_1:102698386-102698405 Msa0902820:intron 60.0%
!! CGTTTTCGAGGCACGGGAAG+GGG - chr6_1:102698387-102698406 Msa0902820:intron 60.0%
CGGGAAGGGGAAGTTGTCTC+CGG - chr6_1:102698400-102698419 Msa0902820:intron 60.0%
GAAGGGGAAGTTGTCTCCGG+TGG - chr6_1:102698403-102698422 Msa0902820:intron 60.0%
GGAAATGGCAGCACAGGGGA+TGG - chr6_1:102698442-102698461 Msa0902820:intron 60.0%
TTATCCGAGAGCGGGGTGGT+CGG - chr6_1:102698481-102698500 Msa0902820:three_prime_UTR 60.0%
AAATCCGACCACCCCGCTCT+CGG + chr6_1:102698488-102698507 None:intergenic 60.0%
CTGTTCCTGATCGTGGGGCT+TGG - chr6_1:102698639-102698658 Msa0902820:CDS 60.0%
GGGCTTGGAGAGGTTCACCT+TGG - chr6_1:102698654-102698673 Msa0902820:CDS 60.0%
CTTCCAAGTGGGTCAGCCCT+TGG - chr6_1:102699700-102699719 Msa0902820:intron 60.0%
! CGGCACTGTGTTGCTGCCAA+AGG + chr6_1:102699997-102700016 None:intergenic 60.0%
TTGGCAGCAACACAGTGCCG+GGG - chr6_1:102699997-102700016 Msa0902820:intron 60.0%
TTTACCGTGGAACGCCGCGC+CGG - chr6_1:102698120-102698139 Msa0902820:intron 65.0%
CCACCGGCGCTACTCCGATT+CGG + chr6_1:102698275-102698294 None:intergenic 65.0%
!! AATCGGAGTAGCGCCGGTGG+CGG - chr6_1:102698275-102698294 Msa0902820:intron 65.0%
!! GGCGTTTTCGAGGCACGGGA+AGG - chr6_1:102698385-102698404 Msa0902820:intron 65.0%
GGGGAAGTTGTCTCCGGTGG+CGG - chr6_1:102698406-102698425 Msa0902820:intron 65.0%
! GTTGTCTCCGGTGGCGGTTG+CGG - chr6_1:102698412-102698431 Msa0902820:intron 65.0%
GCGGCGGAAATGGCAGCACA+GGG - chr6_1:102698437-102698456 Msa0902820:intron 65.0%
CGGCGGAAATGGCAGCACAG+GGG - chr6_1:102698438-102698457 Msa0902820:intron 65.0%
CCTCTCCAAGCCCCACGATC+AGG + chr6_1:102698647-102698666 None:intergenic 65.0%
CCTGATCGTGGGGCTTGGAG+AGG - chr6_1:102698644-102698663 Msa0902820:CDS 65.0%
CTGCCAAGGGCTGACCCACT+TGG + chr6_1:102699706-102699725 None:intergenic 65.0%
CAAGTGGGTCAGCCCTTGGC+AGG - chr6_1:102699704-102699723 Msa0902820:intron 65.0%
GGGGATTTGCACGGCAGCGC+CGG + chr6_1:102697682-102697701 None:intergenic 70.0%
AATGCCGGCGCGGCGTTCCA+CGG + chr6_1:102698127-102698146 None:intergenic 70.0%
! CCGAATCGGAGTAGCGCCGG+TGG - chr6_1:102698272-102698291 Msa0902820:intron 70.0%
GGTTGCGGAGGCGGCGGAAA+TGG - chr6_1:102698427-102698446 Msa0902820:intron 70.0%
GGCGGCGGAAATGGCAGCAC+AGG - chr6_1:102698436-102698455 Msa0902820:intron 70.0%
GTGGGTCAGCCCTTGGCAGG+TGG - chr6_1:102699707-102699726 Msa0902820:intron 70.0%
CTGGCTCCCTGCATGCCAGC+AGG + chr6_1:102699903-102699922 None:intergenic 70.0%
CTGCTGGCATGCAGGGAGCC+AGG - chr6_1:102699901-102699920 Msa0902820:intron 70.0%
! GTCTCCGGTGGCGGTTGCGG+AGG - chr6_1:102698415-102698434 Msa0902820:intron 75.0%
! TCCGGTGGCGGTTGCGGAGG+CGG - chr6_1:102698418-102698437 Msa0902820:intron 75.0%
! GCCGCCTCCGCAACCGCCAC+CGG + chr6_1:102698422-102698441 None:intergenic 80.0%
!! GGTGGCGGTTGCGGAGGCGG+CGG - chr6_1:102698421-102698440 Msa0902820:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 102697494 102701387 102697494 ID=Msa0902820;Name=Msa0902820
chr6_1 mRNA 102697494 102701387 102697494 ID=Msa0902820-mRNA-1;Parent=Msa0902820;Name=Msa0902820-mRNA-1;_AED=0.03;_eAED=0.03;_QI=73|1|1|1|0.33|0.25|4|384|608
chr6_1 exon 102697494 102697747 102697494 ID=Msa0902820-mRNA-1:exon:18064;Parent=Msa0902820-mRNA-1
chr6_1 exon 102697841 102697931 102697841 ID=Msa0902820-mRNA-1:exon:18063;Parent=Msa0902820-mRNA-1
chr6_1 exon 102698469 102699212 102698469 ID=Msa0902820-mRNA-1:exon:18062;Parent=Msa0902820-mRNA-1
chr6_1 exon 102700193 102701387 102700193 ID=Msa0902820-mRNA-1:exon:18061;Parent=Msa0902820-mRNA-1
chr6_1 five_prime_UTR 102701315 102701387 102701315 ID=Msa0902820-mRNA-1:five_prime_utr;Parent=Msa0902820-mRNA-1
chr6_1 CDS 102700193 102701314 102700193 ID=Msa0902820-mRNA-1:cds;Parent=Msa0902820-mRNA-1
chr6_1 CDS 102698508 102699212 102698508 ID=Msa0902820-mRNA-1:cds;Parent=Msa0902820-mRNA-1
chr6_1 three_prime_UTR 102698469 102698507 102698469 ID=Msa0902820-mRNA-1:three_prime_utr;Parent=Msa0902820-mRNA-1
chr6_1 three_prime_UTR 102697841 102697931 102697841 ID=Msa0902820-mRNA-1:three_prime_utr;Parent=Msa0902820-mRNA-1
chr6_1 three_prime_UTR 102697494 102697747 102697494 ID=Msa0902820-mRNA-1:three_prime_utr;Parent=Msa0902820-mRNA-1
Gene Sequence

>Msa0902820

ATGTTCGAAAAACCCTCACTCATTTTCATTCAACCAATCATGAACCGCCAAGTACTACCACCGTCTCCAAAAAACGCAACCACACTCAACCCCAAACTCTGGCGAGCTATCGCCGGCGCTGCCGTGCAAATCCCCTCCGTCAATTCTAGGGTTTACTACTTCCCTCAAGGTCACATGGACCAAGCTACTTCACTTCCGAACAATCTCTCACCTCTTCTTCTCTCTCGTCCCTACATTCTCTGCTCCGTCTCCGCCGTTCATTTCCTCGCCGATCCGAAAACCGATGAGGTTTTCGCTAAGCTTTTTCTTCAACCGTTGAATGATTTCACTGTTAATTTTCCACGGATTCCGGTGATTGAAGCTGACGACGGTGAGAGGATTTCTTCGTTTGCGAAGATTCTTACTCCTTCTGATGCGAACAACGGTGGTGGATTTTCTGTTCCGAGGTTTTGTGCTGATTCGATTTTTCCTCCGTTGGATTATAGTATGGATCCTCCGTTGCAGAATTTGTTGATTACTGATGTTCATGGTTTGACTTGGGAGTTTCGTCACATTTACCGTGGAACGCCGCGCCGGCATTTGTTGACCACCGGTTGGAGTAGGTTTGTGAACGCTAAGAAGCTTGTTGCTGGTGATTCCGTTGTTTTTATGAAGAATACTAGAGGTGCAATGTTCATCGGAATCCGTCGTGCTGTTCGATTAGTTCCGAATCGGAGTAGCGCCGGTGGCGGTGTTTGCTCCGATGTGTCGAGATTGTGTCTTCCGATCTGTGGAGTGAGAAGTAGGGTGGATGAAGAAGAGAAGCTGGTGGATGAGAAGGCGTTTTCGAGGCACGGGAAGGGGAAGTTGTCTCCGGTGGCGGTTGCGGAGGCGGCGGAAATGGCAGCACAGGGGATGGGGTTTGAAGTGGTGTATTATCCGAGAGCGGGGTGGTCGGATTTTGTGTTGAAAGCGGAGGTTGTGGATGCGGCGATGAGTGTTACTTGGTGTCCTGGAATGAGAATCAAAATGGCTGTGGAGACTGATGATTCTTCCAGGACTACTTGGTTTCAAGGTGTAGTGTCTCAGGTTTCTGTTCCTGATCGTGGGGCTTGGAGAGGTTCACCTTGGCGTATGCTTCATATTACATGGGACGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGGTGGAACTTCTTTCTACTACACCTTCCCTTCATACGCCCTTTCCCCCATTGAAAAGGACTAGAGGGGTATCTGGGGTGTTAACTGATGGAGATGGAGACCCCTTTTCTATCACAGGGTTCACTAATTCAACAATGGGACAATTGAATCAACCATTGTTGAGTTACAGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCCGTTTCAAGTTTTTCCAACTTTCCAGGTGATAACTTCCGTCTTTGTATGGGTAACTCCTTTGGCAGCAACACAGTGCCGGGGTTAAAATCTTTTTCAACGGATCTAAACGTTGGCAGTTCTCACTCTGGTGATTTTTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTTCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTGTAACGTTTCAGCTATTTGGTGCAGTCATTCAGACAGAACAGCCCGTTGAAAGTGGTTCAAATGGTACTGTTAGCACAGGAGATGACAGCAGTAAGGGCTGCAACGAAACTGAAGGCATTAACAACCCTCTTGAGGATTCGACTTACTCAAAATTGCTCGACAGGCTTGATGGCCAGTGCCAAATAGCCTCAACAGTTGAGGCGTGCTATCTGTGA
Protein sequence

>Msa0902820

MFEKPSLIFIQPIMNRQVLPPSPKNATTLNPKLWRAIAGAAVQIPSVNSRVYYFPQGHMDQATSLPNNLSPLLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFTVNFPRIPVIEADDGERISSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPLQNLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSRFVNAKKLVAGDSVVFMKNTRGAMFIGIRRAVRLVPNRSSAGGGVCSDVSRLCLPICGVRSRVDEEEKLVDEKAFSRHGKGKLSPVAVAEAAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWFQGVVSQVSVPDRGAWRGSPWRMLHITWDEPEVLQTSKWVSPWQVELLSTTPSLHTPFPPLKRTRGVSGVLTDGDGDPFSITGFTNSTMGQLNQPLLSYSTFPAGMQGARHDLFSVSSFSNFPGDNFRLCMGNSFGSNTVPGLKSFSTDLNVGSSHSGDFSPESQSSLPSFGTDFVRNYNCNSMKPGPVTFQLFGAVIQTEQPVESGSNGTVSTGDDSSKGCNETEGINNPLEDSTYSKLLDRLDGQCQIASTVEACYL*