Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092530 | XP_003603787.2 | 72.603 | 146 | 21 | 2 | 13 | 143 | 4 | 145 | 3.14e-58 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092530 | I3S629 | 72.603 | 146 | 21 | 2 | 13 | 143 | 4 | 145 | 1.50e-58 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa0092530 | 0.886415 | 3.488062e-72 | -8.615850e-47 |
| Msa0092530 | Msa0092590 | 0.817607 | 3.020693e-52 | -8.615850e-47 |
| Msa0092530 | Msa0419240 | 0.802064 | 6.698826e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092530 | MtrunA17_Chr3g0143041 | 72.603 | 146 | 21 | 2 | 13 | 143 | 4 | 145 | 2.89e-62 | 188 |
| Msa0092530 | MtrunA17_Chr3g0143031 | 72.603 | 146 | 21 | 2 | 13 | 143 | 4 | 145 | 2.89e-62 | 188 |
| Msa0092530 | MtrunA17_Chr3g0142551 | 74.561 | 114 | 10 | 2 | 34 | 132 | 1 | 110 | 5.66e-49 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATTAGTTGTTCTCTAT+TGG | 0.210969 | 1_2:-75016491 | Msa0092530:intron |
| ATCGGGCATTTGATTTCTTT+TGG | 0.267105 | 1_2:+75016145 | None:intergenic |
| ATAGAAAGAAAACTTCTTCT+TGG | 0.294268 | 1_2:-75016286 | Msa0092530:intron |
| TCCAACGTCTTTGCGTAAAT+CGG | 0.324145 | 1_2:+75016127 | None:intergenic |
| GCAGCCTAGACTCTCTCTAA+TGG | 0.370128 | 1_2:-75016444 | Msa0092530:CDS |
| ATCGCCGCTGCCGTCGCAAA+TGG | 0.374917 | 1_2:-75016411 | Msa0092530:CDS |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.393602 | 1_2:+75016215 | None:intergenic |
| TAGAAAGAAAACTTCTTCTT+GGG | 0.404734 | 1_2:-75016285 | Msa0092530:CDS |
| CCTCGTCCTCATCATGTTTG+AGG | 0.410618 | 1_2:-75016834 | Msa0092530:intron |
| TCTCTAACAGCATGCATACT+TGG | 0.418938 | 1_2:-75015863 | Msa0092530:intron |
| CAGCCTAGACTCTCTCTAAT+GGG | 0.439535 | 1_2:-75016443 | Msa0092530:CDS |
| AAAGAGGAGCTGTTACTGAT+AGG | 0.462033 | 1_2:-75015742 | Msa0092530:CDS |
| CCAACGTCTTTGCGTAAATC+GGG | 0.462699 | 1_2:+75016128 | None:intergenic |
| TCGCCGCTGCCGTCGCAAAT+GGG | 0.476476 | 1_2:-75016410 | Msa0092530:intron |
| CTCTATTGGAATTTATTCAA+AGG | 0.490531 | 1_2:-75016477 | Msa0092530:CDS |
| AACTTCTTCTTGGGAAGAAG+CGG | 0.497748 | 1_2:-75016276 | Msa0092530:CDS |
| GATGGAGATCTTCTTTATGA+TGG | 0.511489 | 1_2:-75016175 | Msa0092530:CDS |
| TTACCCATTTGCGACGGCAG+CGG | 0.526111 | 1_2:+75016407 | None:intergenic |
| TTAGAGAGAGTCTAGGCTGC+TGG | 0.541773 | 1_2:+75016447 | None:intergenic |
| GCGTCTTGAGAAAGGGAAAG+AGG | 0.542494 | 1_2:-75015758 | Msa0092530:CDS |
| CCCGATTTACGCAAAGACGT+TGG | 0.554712 | 1_2:-75016128 | Msa0092530:CDS |
| ACAAAGGAGGATCTTCTCCA+TGG | 0.556428 | 1_2:-75016232 | Msa0092530:CDS |
| CCTCAAACATGATGAGGACG+AGG | 0.568612 | 1_2:+75016834 | None:intergenic |
| TAGATACAATAGACCTCAAG+TGG | 0.580845 | 1_2:-75015978 | Msa0092530:intron |
| ATTTACGCAAAGACGTTGGA+AGG | 0.581460 | 1_2:-75016124 | Msa0092530:intron |
| GTGCCCATTAGAGAGAGTCT+AGG | 0.590956 | 1_2:+75016440 | None:intergenic |
| AAAATACCTCAAACATGATG+AGG | 0.597319 | 1_2:+75016828 | None:intergenic |
| AAAAGTAGAAAGCACAAAGG+AGG | 0.607683 | 1_2:-75016245 | Msa0092530:CDS |
| CAAAGGAGGATCTTCTCCAT+GGG | 0.608293 | 1_2:-75016231 | Msa0092530:CDS |
| TCTTCTTGGGAAGAAGCGGA+AGG | 0.614535 | 1_2:-75016272 | Msa0092530:CDS |
| GTATAATTGGACACCACTTG+AGG | 0.631367 | 1_2:+75015965 | None:intergenic |
| TCTCCATGGGAAGAAGCCAA+AGG | 0.672590 | 1_2:-75016218 | Msa0092530:CDS |
| GTTGAATTACCCATTTGCGA+CGG | 0.680657 | 1_2:+75016401 | None:intergenic |
| AAACATGATGAGGACGAGGG+AGG | 0.707041 | 1_2:+75016838 | None:intergenic |
| CTCAAACATGATGAGGACGA+GGG | 0.717622 | 1_2:+75016835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAATCAATTCAA+AGG | + | chr1_2:75015872-75015891 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATATTTTGTGA+TGG | - | chr1_2:75015881-75015900 | Msa0092530:intron | 10.0% |
| !! | ATAAAAATAAATCAATTCAA+AGG | + | chr1_2:75015872-75015891 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATATTTTGTGA+TGG | - | chr1_2:75015881-75015900 | Msa0092530:intron | 10.0% |
| !! | AAAATAATAACAATAACATG+AGG | + | chr1_2:75016047-75016066 | None:intergenic | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | + | chr1_2:75016084-75016103 | None:intergenic | 15.0% |
| !! | AAAATAATAACAATAACATG+AGG | + | chr1_2:75016047-75016066 | None:intergenic | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | + | chr1_2:75016084-75016103 | None:intergenic | 15.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | + | chr1_2:75015783-75015802 | None:intergenic | 20.0% |
| !!! | TTATATTTTGTGATGGAATT+AGG | - | chr1_2:75015888-75015907 | Msa0092530:intron | 20.0% |
| !!! | TATATTTTGTGATGGAATTA+GGG | - | chr1_2:75015889-75015908 | Msa0092530:intron | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | - | chr1_2:75015957-75015976 | Msa0092530:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | - | chr1_2:75015958-75015977 | Msa0092530:intron | 20.0% |
| !! | ATTAATTAGTTGTTCTCTAT+TGG | - | chr1_2:75016090-75016109 | Msa0092530:intron | 20.0% |
| !! | ATACTTATGAAAATAGGATT+AGG | + | chr1_2:75016205-75016224 | None:intergenic | 20.0% |
| !! | AGCAAAATACTTATGAAAAT+AGG | + | chr1_2:75016211-75016230 | None:intergenic | 20.0% |
| !! | TGAAATAATAAGAATCCAAA+GGG | + | chr1_2:75016267-75016286 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAATCCAA+AGG | + | chr1_2:75016268-75016287 | None:intergenic | 20.0% |
| !!! | TGTGCATATTTTAATTCTTT+AGG | - | chr1_2:75016686-75016705 | Msa0092530:intron | 20.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | + | chr1_2:75015783-75015802 | None:intergenic | 20.0% |
| !!! | TTATATTTTGTGATGGAATT+AGG | - | chr1_2:75015888-75015907 | Msa0092530:intron | 20.0% |
| !!! | TATATTTTGTGATGGAATTA+GGG | - | chr1_2:75015889-75015908 | Msa0092530:intron | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | - | chr1_2:75015957-75015976 | Msa0092530:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | - | chr1_2:75015958-75015977 | Msa0092530:intron | 20.0% |
| !! | ATTAATTAGTTGTTCTCTAT+TGG | - | chr1_2:75016090-75016109 | Msa0092530:intron | 20.0% |
| !! | ATACTTATGAAAATAGGATT+AGG | + | chr1_2:75016205-75016224 | None:intergenic | 20.0% |
| !! | AGCAAAATACTTATGAAAAT+AGG | + | chr1_2:75016211-75016230 | None:intergenic | 20.0% |
| !! | TGAAATAATAAGAATCCAAA+GGG | + | chr1_2:75016267-75016286 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAATCCAA+AGG | + | chr1_2:75016268-75016287 | None:intergenic | 20.0% |
| !!! | TGTGCATATTTTAATTCTTT+AGG | - | chr1_2:75016686-75016705 | Msa0092530:intron | 20.0% |
| ! | TTCTCAAATTTGTGAGATTA+GGG | - | chr1_2:75015839-75015858 | Msa0092530:CDS | 25.0% |
| ! | CTCTATTGGAATTTATTCAA+AGG | - | chr1_2:75016104-75016123 | Msa0092530:intron | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCT+TGG | - | chr1_2:75016295-75016314 | Msa0092530:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCTT+GGG | - | chr1_2:75016296-75016315 | Msa0092530:intron | 25.0% |
| ! | TTCTCAAATTTGTGAGATTA+GGG | - | chr1_2:75015839-75015858 | Msa0092530:CDS | 25.0% |
| ! | CTCTATTGGAATTTATTCAA+AGG | - | chr1_2:75016104-75016123 | Msa0092530:intron | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCT+TGG | - | chr1_2:75016295-75016314 | Msa0092530:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCTT+GGG | - | chr1_2:75016296-75016315 | Msa0092530:intron | 25.0% |
| AAAATACCTCAAACATGATG+AGG | + | chr1_2:75015756-75015775 | None:intergenic | 30.0% | |
| CTTCTCAAATTTGTGAGATT+AGG | - | chr1_2:75015838-75015857 | Msa0092530:CDS | 30.0% | |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | - | chr1_2:75015908-75015927 | Msa0092530:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | - | chr1_2:75015909-75015928 | Msa0092530:intron | 30.0% |
| ACAATAACATGAGGAACATA+TGG | + | chr1_2:75016038-75016057 | None:intergenic | 30.0% | |
| CAAATAATAACTTCACCCTT+TGG | - | chr1_2:75016249-75016268 | Msa0092530:CDS | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | - | chr1_2:75016388-75016407 | Msa0092530:intron | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | - | chr1_2:75016547-75016566 | Msa0092530:intron | 30.0% |
| AAGAGAAAAACTTGCCTTAT+CGG | + | chr1_2:75016642-75016661 | None:intergenic | 30.0% | |
| AAAATACCTCAAACATGATG+AGG | + | chr1_2:75015756-75015775 | None:intergenic | 30.0% | |
| CTTCTCAAATTTGTGAGATT+AGG | - | chr1_2:75015838-75015857 | Msa0092530:CDS | 30.0% | |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | - | chr1_2:75015908-75015927 | Msa0092530:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | - | chr1_2:75015909-75015928 | Msa0092530:intron | 30.0% |
| ACAATAACATGAGGAACATA+TGG | + | chr1_2:75016038-75016057 | None:intergenic | 30.0% | |
| CAAATAATAACTTCACCCTT+TGG | - | chr1_2:75016249-75016268 | Msa0092530:CDS | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | - | chr1_2:75016388-75016407 | Msa0092530:intron | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | - | chr1_2:75016547-75016566 | Msa0092530:intron | 30.0% |
| AAGAGAAAAACTTGCCTTAT+CGG | + | chr1_2:75016642-75016661 | None:intergenic | 30.0% | |
| CAGATTGTCACACACAAAAT+TGG | + | chr1_2:75015939-75015958 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | - | chr1_2:75015972-75015991 | Msa0092530:intron | 35.0% |
| GAGGAACATATGGAGTATAT+AGG | + | chr1_2:75016028-75016047 | None:intergenic | 35.0% | |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | - | chr1_2:75016333-75016352 | Msa0092530:intron | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | - | chr1_2:75016336-75016355 | Msa0092530:intron | 35.0% |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | + | chr1_2:75016328-75016347 | None:intergenic | 35.0% |
| GATGGAGATCTTCTTTATGA+TGG | - | chr1_2:75016406-75016425 | Msa0092530:intron | 35.0% | |
| !! | ATCGGGCATTTGATTTCTTT+TGG | + | chr1_2:75016439-75016458 | None:intergenic | 35.0% |
| GATCAAATAACCTCAGCTTA+TGG | - | chr1_2:75016522-75016541 | Msa0092530:intron | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | - | chr1_2:75016603-75016622 | Msa0092530:intron | 35.0% | |
| AGAGAAAAACTTGCCTTATC+GGG | + | chr1_2:75016641-75016660 | None:intergenic | 35.0% | |
| AGCATGAAGAGAAAAAGAAG+CGG | - | chr1_2:75016774-75016793 | Msa0092530:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | - | chr1_2:75016816-75016835 | Msa0092530:intron | 35.0% |
| CAGATTGTCACACACAAAAT+TGG | + | chr1_2:75015939-75015958 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | - | chr1_2:75015972-75015991 | Msa0092530:intron | 35.0% |
| GAGGAACATATGGAGTATAT+AGG | + | chr1_2:75016028-75016047 | None:intergenic | 35.0% | |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | - | chr1_2:75016333-75016352 | Msa0092530:intron | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | - | chr1_2:75016336-75016355 | Msa0092530:intron | 35.0% |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | + | chr1_2:75016328-75016347 | None:intergenic | 35.0% |
| GATGGAGATCTTCTTTATGA+TGG | - | chr1_2:75016406-75016425 | Msa0092530:intron | 35.0% | |
| !! | ATCGGGCATTTGATTTCTTT+TGG | + | chr1_2:75016439-75016458 | None:intergenic | 35.0% |
| GATCAAATAACCTCAGCTTA+TGG | - | chr1_2:75016522-75016541 | Msa0092530:intron | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | - | chr1_2:75016603-75016622 | Msa0092530:intron | 35.0% | |
| AGAGAAAAACTTGCCTTATC+GGG | + | chr1_2:75016641-75016660 | None:intergenic | 35.0% | |
| AGCATGAAGAGAAAAAGAAG+CGG | - | chr1_2:75016774-75016793 | Msa0092530:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | - | chr1_2:75016816-75016835 | Msa0092530:intron | 35.0% |
| GTTGAATTACCCATTTGCGA+CGG | + | chr1_2:75016183-75016202 | None:intergenic | 40.0% | |
| AACTTCTTCTTGGGAAGAAG+CGG | - | chr1_2:75016305-75016324 | Msa0092530:intron | 40.0% | |
| TCCAACGTCTTTGCGTAAAT+CGG | + | chr1_2:75016457-75016476 | None:intergenic | 40.0% | |
| ATTTACGCAAAGACGTTGGA+AGG | - | chr1_2:75016457-75016476 | Msa0092530:CDS | 40.0% | |
| GAAGAAACAACCATAAGCTG+AGG | + | chr1_2:75016535-75016554 | None:intergenic | 40.0% | |
| GTATAATTGGACACCACTTG+AGG | + | chr1_2:75016619-75016638 | None:intergenic | 40.0% | |
| GTGTCCAATTATACCCGATA+AGG | - | chr1_2:75016625-75016644 | Msa0092530:intron | 40.0% | |
| CTTGCCTTATCGGGTATAAT+TGG | + | chr1_2:75016632-75016651 | None:intergenic | 40.0% | |
| TCTCTAACAGCATGCATACT+TGG | - | chr1_2:75016718-75016737 | Msa0092530:intron | 40.0% | |
| ATGAAGAGAAAAAGAAGCGG+TGG | - | chr1_2:75016777-75016796 | Msa0092530:intron | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | - | chr1_2:75016815-75016834 | Msa0092530:intron | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | - | chr1_2:75016839-75016858 | Msa0092530:exon | 40.0% | |
| GTTGAATTACCCATTTGCGA+CGG | + | chr1_2:75016183-75016202 | None:intergenic | 40.0% | |
| AACTTCTTCTTGGGAAGAAG+CGG | - | chr1_2:75016305-75016324 | Msa0092530:intron | 40.0% | |
| TCCAACGTCTTTGCGTAAAT+CGG | + | chr1_2:75016457-75016476 | None:intergenic | 40.0% | |
| ATTTACGCAAAGACGTTGGA+AGG | - | chr1_2:75016457-75016476 | Msa0092530:CDS | 40.0% | |
| GAAGAAACAACCATAAGCTG+AGG | + | chr1_2:75016535-75016554 | None:intergenic | 40.0% | |
| GTATAATTGGACACCACTTG+AGG | + | chr1_2:75016619-75016638 | None:intergenic | 40.0% | |
| GTGTCCAATTATACCCGATA+AGG | - | chr1_2:75016625-75016644 | Msa0092530:intron | 40.0% | |
| CTTGCCTTATCGGGTATAAT+TGG | + | chr1_2:75016632-75016651 | None:intergenic | 40.0% | |
| TCTCTAACAGCATGCATACT+TGG | - | chr1_2:75016718-75016737 | Msa0092530:intron | 40.0% | |
| ATGAAGAGAAAAAGAAGCGG+TGG | - | chr1_2:75016777-75016796 | Msa0092530:intron | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | - | chr1_2:75016815-75016834 | Msa0092530:intron | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | - | chr1_2:75016839-75016858 | Msa0092530:exon | 40.0% | |
| CTCAAACATGATGAGGACGA+GGG | + | chr1_2:75015749-75015768 | None:intergenic | 45.0% | |
| CAGCCTAGACTCTCTCTAAT+GGG | - | chr1_2:75016138-75016157 | Msa0092530:CDS | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | - | chr1_2:75016349-75016368 | Msa0092530:intron | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | - | chr1_2:75016350-75016369 | Msa0092530:intron | 45.0% | |
| CCAACGTCTTTGCGTAAATC+GGG | + | chr1_2:75016456-75016475 | None:intergenic | 45.0% | |
| CTCAAACATGATGAGGACGA+GGG | + | chr1_2:75015749-75015768 | None:intergenic | 45.0% | |
| CAGCCTAGACTCTCTCTAAT+GGG | - | chr1_2:75016138-75016157 | Msa0092530:CDS | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | - | chr1_2:75016349-75016368 | Msa0092530:intron | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | - | chr1_2:75016350-75016369 | Msa0092530:intron | 45.0% | |
| CCAACGTCTTTGCGTAAATC+GGG | + | chr1_2:75016456-75016475 | None:intergenic | 45.0% | |
| AAACATGATGAGGACGAGGG+AGG | + | chr1_2:75015746-75015765 | None:intergenic | 50.0% | |
| CCTCAAACATGATGAGGACG+AGG | + | chr1_2:75015750-75015769 | None:intergenic | 50.0% | |
| CCTCGTCCTCATCATGTTTG+AGG | - | chr1_2:75015747-75015766 | Msa0092530:CDS | 50.0% | |
| TTAGAGAGAGTCTAGGCTGC+TGG | + | chr1_2:75016137-75016156 | None:intergenic | 50.0% | |
| GCAGCCTAGACTCTCTCTAA+TGG | - | chr1_2:75016137-75016156 | Msa0092530:CDS | 50.0% | |
| GTGCCCATTAGAGAGAGTCT+AGG | + | chr1_2:75016144-75016163 | None:intergenic | 50.0% | |
| TCTTCTTGGGAAGAAGCGGA+AGG | - | chr1_2:75016309-75016328 | Msa0092530:intron | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | - | chr1_2:75016363-75016382 | Msa0092530:intron | 50.0% | |
| CCCGATTTACGCAAAGACGT+TGG | - | chr1_2:75016453-75016472 | Msa0092530:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | - | chr1_2:75016823-75016842 | Msa0092530:intron | 50.0% | |
| AAACATGATGAGGACGAGGG+AGG | + | chr1_2:75015746-75015765 | None:intergenic | 50.0% | |
| CCTCAAACATGATGAGGACG+AGG | + | chr1_2:75015750-75015769 | None:intergenic | 50.0% | |
| CCTCGTCCTCATCATGTTTG+AGG | - | chr1_2:75015747-75015766 | Msa0092530:CDS | 50.0% | |
| TTAGAGAGAGTCTAGGCTGC+TGG | + | chr1_2:75016137-75016156 | None:intergenic | 50.0% | |
| GCAGCCTAGACTCTCTCTAA+TGG | - | chr1_2:75016137-75016156 | Msa0092530:CDS | 50.0% | |
| GTGCCCATTAGAGAGAGTCT+AGG | + | chr1_2:75016144-75016163 | None:intergenic | 50.0% | |
| TCTTCTTGGGAAGAAGCGGA+AGG | - | chr1_2:75016309-75016328 | Msa0092530:intron | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | - | chr1_2:75016363-75016382 | Msa0092530:intron | 50.0% | |
| CCCGATTTACGCAAAGACGT+TGG | - | chr1_2:75016453-75016472 | Msa0092530:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | - | chr1_2:75016823-75016842 | Msa0092530:intron | 50.0% | |
| TTACCCATTTGCGACGGCAG+CGG | + | chr1_2:75016177-75016196 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | + | chr1_2:75016369-75016388 | None:intergenic | 55.0% |
| TTACCCATTTGCGACGGCAG+CGG | + | chr1_2:75016177-75016196 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | + | chr1_2:75016369-75016388 | None:intergenic | 55.0% |
| ATCGCCGCTGCCGTCGCAAA+TGG | - | chr1_2:75016170-75016189 | Msa0092530:CDS | 65.0% | |
| TCGCCGCTGCCGTCGCAAAT+GGG | - | chr1_2:75016171-75016190 | Msa0092530:CDS | 65.0% | |
| ATCGCCGCTGCCGTCGCAAA+TGG | - | chr1_2:75016170-75016189 | Msa0092530:CDS | 65.0% | |
| TCGCCGCTGCCGTCGCAAAT+GGG | - | chr1_2:75016171-75016190 | Msa0092530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 75015730 | 75016873 | 75015730 | ID=Msa0092530;Name=Msa0092530 |
| chr1_2 | mRNA | 75015730 | 75016873 | 75015730 | ID=Msa0092530-mRNA-1;Parent=Msa0092530;Name=Msa0092530-mRNA-1;_AED=0.25;_eAED=0.30;_QI=30|0.25|0.6|1|0.25|0.4|5|8|150 |
| chr1_2 | exon | 75015730 | 75015875 | 75015730 | ID=Msa0092530-mRNA-1:exon:26464;Parent=Msa0092530-mRNA-1 |
| chr1_2 | exon | 75015979 | 75016010 | 75015979 | ID=Msa0092530-mRNA-1:exon:26463;Parent=Msa0092530-mRNA-1 |
| chr1_2 | exon | 75016125 | 75016304 | 75016125 | ID=Msa0092530-mRNA-1:exon:26462;Parent=Msa0092530-mRNA-1 |
| chr1_2 | exon | 75016411 | 75016504 | 75016411 | ID=Msa0092530-mRNA-1:exon:26461;Parent=Msa0092530-mRNA-1 |
| chr1_2 | exon | 75016835 | 75016873 | 75016835 | ID=Msa0092530-mRNA-1:exon:26460;Parent=Msa0092530-mRNA-1 |
| chr1_2 | five_prime_UTR | 75016844 | 75016873 | 75016844 | ID=Msa0092530-mRNA-1:five_prime_utr;Parent=Msa0092530-mRNA-1 |
| chr1_2 | CDS | 75016835 | 75016843 | 75016835 | ID=Msa0092530-mRNA-1:cds;Parent=Msa0092530-mRNA-1 |
| chr1_2 | CDS | 75016411 | 75016504 | 75016411 | ID=Msa0092530-mRNA-1:cds;Parent=Msa0092530-mRNA-1 |
| chr1_2 | CDS | 75016125 | 75016304 | 75016125 | ID=Msa0092530-mRNA-1:cds;Parent=Msa0092530-mRNA-1 |
| chr1_2 | CDS | 75015979 | 75016010 | 75015979 | ID=Msa0092530-mRNA-1:cds;Parent=Msa0092530-mRNA-1 |
| chr1_2 | CDS | 75015738 | 75015875 | 75015738 | ID=Msa0092530-mRNA-1:cds;Parent=Msa0092530-mRNA-1 |
| chr1_2 | three_prime_UTR | 75015730 | 75015737 | 75015730 | ID=Msa0092530-mRNA-1:three_prime_utr;Parent=Msa0092530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
