Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092590 | XP_003603787.2 | 71.918 | 146 | 22 | 2 | 42 | 172 | 4 | 145 | 1.58e-57 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092590 | I3S629 | 71.918 | 146 | 22 | 2 | 42 | 172 | 4 | 145 | 7.53e-58 | 188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa0092590 | 0.902498 | 9.116012e-79 | -8.615850e-47 |
| Msa0092530 | Msa0092590 | 0.817607 | 3.020693e-52 | -8.615850e-47 |
| Msa0092550 | Msa0092590 | 0.847885 | 8.710822e-60 | -8.615850e-47 |
| Msa0092590 | Msa0419240 | 0.831908 | 1.278580e-55 | -8.615850e-47 |
| Msa0092590 | Msa0465150 | 0.826671 | 2.386756e-54 | -8.615850e-47 |
| Msa0092590 | Msa0465180 | 0.839703 | 1.352345e-57 | -8.615850e-47 |
| Msa0092590 | Msa0465200 | 0.811333 | 7.379691e-51 | -8.615850e-47 |
| Msa0092590 | Msa1398610 | 0.846447 | 2.159562e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0092590 | MtrunA17_Chr3g0143041 | 71.918 | 146 | 22 | 2 | 42 | 172 | 4 | 145 | 1.45e-61 | 188 |
| Msa0092590 | MtrunA17_Chr3g0143031 | 71.918 | 146 | 22 | 2 | 42 | 172 | 4 | 145 | 1.45e-61 | 188 |
| Msa0092590 | MtrunA17_Chr3g0142551 | 75.439 | 114 | 9 | 2 | 63 | 161 | 1 | 110 | 3.16e-49 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAGAAAACTTCTTCT+TGG | 0.222728 | 1_2:+75140179 | Msa0092590:intron |
| ATCGGGCATTTGATTTCTTT+TGG | 0.267105 | 1_2:-75140320 | None:intergenic |
| TCCAACGTCTTTGCGTAAAT+CGG | 0.324145 | 1_2:-75140338 | None:intergenic |
| TTCAGTTCTGCTAATCTTTG+TGG | 0.351699 | 1_2:+75140967 | Msa0092590:intron |
| CAACGAGTGGCTGTGGATAT+CGG | 0.369724 | 1_2:-75139548 | None:intergenic |
| GCAGCCTAGACTCTCTCTAA+TGG | 0.370128 | 1_2:+75140021 | Msa0092590:CDS |
| ATCGCCGCTGCCGTCGCAAA+TGG | 0.374917 | 1_2:+75140054 | Msa0092590:CDS |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.393602 | 1_2:-75140250 | None:intergenic |
| TCTCTAACAGCATGCATACT+TGG | 0.418938 | 1_2:+75140637 | Msa0092590:intron |
| CAGCCTAGACTCTCTCTAAT+GGG | 0.439535 | 1_2:+75140022 | Msa0092590:CDS |
| AAAGAGGAGCTGTTACTGAT+AGG | 0.462033 | 1_2:+75140758 | Msa0092590:CDS |
| CCAACGTCTTTGCGTAAATC+GGG | 0.462699 | 1_2:-75140337 | None:intergenic |
| TCGCCGCTGCCGTCGCAAAT+GGG | 0.476476 | 1_2:+75140055 | Msa0092590:CDS |
| ACGCGATCAACGAGTGGCTG+TGG | 0.492879 | 1_2:-75139555 | None:intergenic |
| ATTCTGTATTATGCAACATC+AGG | 0.496837 | 1_2:-75141007 | None:intergenic |
| TTACCCATTTGCGACGGCAG+CGG | 0.526111 | 1_2:-75140058 | None:intergenic |
| GATGGAGAGCTTCTTTATGA+TGG | 0.535629 | 1_2:+75140290 | Msa0092590:CDS |
| TTAGAGAGAGTCTAGGCTGC+TGG | 0.541773 | 1_2:-75140018 | None:intergenic |
| GCGTCTTGAGAAAGGGAAAG+AGG | 0.542494 | 1_2:+75140742 | Msa0092590:CDS |
| AACTTCTTCTTGGAAAGAAG+CGG | 0.547573 | 1_2:+75140189 | Msa0092590:CDS |
| CCTCAAACATGATGAGGACA+AGG | 0.552685 | 1_2:-75139631 | None:intergenic |
| CCCGATTTACGCAAAGACGT+TGG | 0.554712 | 1_2:+75140337 | Msa0092590:CDS |
| ACAAAGGAGGATCTTCTCCA+TGG | 0.556428 | 1_2:+75140233 | Msa0092590:CDS |
| TAGATACAATAGACCTCAAG+TGG | 0.580845 | 1_2:+75140522 | Msa0092590:CDS |
| ATTTACGCAAAGACGTTGGA+AGG | 0.581460 | 1_2:+75140341 | Msa0092590:CDS |
| GGCACCTATTGAACAAAAGT+AGG | 0.586293 | 1_2:-75139527 | None:intergenic |
| GTGCCCATTAGAGAGAGTCT+AGG | 0.590956 | 1_2:-75140025 | None:intergenic |
| AAAATACCTCAAACATGATG+AGG | 0.597319 | 1_2:-75139637 | None:intergenic |
| AAAAGTAGAAAGCACAAAGG+AGG | 0.607683 | 1_2:+75140220 | Msa0092590:CDS |
| CAAAGGAGGATCTTCTCCAT+GGG | 0.608293 | 1_2:+75140234 | Msa0092590:CDS |
| TCTTCTTGGAAAGAAGCGGA+AGG | 0.619915 | 1_2:+75140193 | Msa0092590:CDS |
| GTATAATTGGACACCACTTG+AGG | 0.631367 | 1_2:-75140535 | None:intergenic |
| AAACAAACGCGATCAACGAG+TGG | 0.639946 | 1_2:-75139561 | None:intergenic |
| TCTCCATGGGAAGAAGCCAA+AGG | 0.672590 | 1_2:+75140247 | Msa0092590:CDS |
| GTTGAATTACCCATTTGCGA+CGG | 0.680657 | 1_2:-75140064 | None:intergenic |
| AAACATGATGAGGACAAGGG+AGG | 0.710147 | 1_2:-75139627 | None:intergenic |
| CTCAAACATGATGAGGACAA+GGG | 0.715539 | 1_2:-75139630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAATCAATTCAA+AGG | - | chr1_2:75139756-75139775 | None:intergenic | 10.0% |
| !! | AAAATAATAACAATAAAATG+AGG | - | chr1_2:75139931-75139950 | None:intergenic | 10.0% |
| !! | ATAAAAATAAATCAATTCAA+AGG | - | chr1_2:75139756-75139775 | None:intergenic | 10.0% |
| !! | AAAATAATAACAATAAAATG+AGG | - | chr1_2:75139931-75139950 | None:intergenic | 10.0% |
| !!! | TTTATTTTTATGTTTTGTGA+TGG | + | chr1_2:75139765-75139784 | Msa0092590:intron | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | chr1_2:75139968-75139987 | None:intergenic | 15.0% |
| !!! | TTTATTTTTATGTTTTGTGA+TGG | + | chr1_2:75139765-75139784 | Msa0092590:intron | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | chr1_2:75139968-75139987 | None:intergenic | 15.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | - | chr1_2:75139667-75139686 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | + | chr1_2:75139841-75139860 | Msa0092590:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | + | chr1_2:75139842-75139861 | Msa0092590:intron | 20.0% |
| !! | ATTAATTAGTTGTTCTCTAT+TGG | + | chr1_2:75139974-75139993 | Msa0092590:intron | 20.0% |
| !! | ATACTTATGAAAATAGGATT+AGG | - | chr1_2:75140089-75140108 | None:intergenic | 20.0% |
| !! | AGCAAAATACTTATGAAAAT+AGG | - | chr1_2:75140095-75140114 | None:intergenic | 20.0% |
| !! | TGAAATAATAAGAATCCAAA+GGG | - | chr1_2:75140151-75140170 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAATCCAA+AGG | - | chr1_2:75140152-75140171 | None:intergenic | 20.0% |
| !!! | TGTGCATATTTTAATTCTTT+AGG | + | chr1_2:75140605-75140624 | Msa0092590:intron | 20.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | - | chr1_2:75139667-75139686 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | + | chr1_2:75139841-75139860 | Msa0092590:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | + | chr1_2:75139842-75139861 | Msa0092590:intron | 20.0% |
| !! | ATTAATTAGTTGTTCTCTAT+TGG | + | chr1_2:75139974-75139993 | Msa0092590:intron | 20.0% |
| !! | ATACTTATGAAAATAGGATT+AGG | - | chr1_2:75140089-75140108 | None:intergenic | 20.0% |
| !! | AGCAAAATACTTATGAAAAT+AGG | - | chr1_2:75140095-75140114 | None:intergenic | 20.0% |
| !! | TGAAATAATAAGAATCCAAA+GGG | - | chr1_2:75140151-75140170 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAATCCAA+AGG | - | chr1_2:75140152-75140171 | None:intergenic | 20.0% |
| !!! | TGTGCATATTTTAATTCTTT+AGG | + | chr1_2:75140605-75140624 | Msa0092590:intron | 20.0% |
| ! | TTCTCAAATTTGTGAGATTA+GGG | + | chr1_2:75139723-75139742 | Msa0092590:intron | 25.0% |
| !!! | TTATGTTTTGTGATGGAATT+AGG | + | chr1_2:75139772-75139791 | Msa0092590:intron | 25.0% |
| !!! | TATGTTTTGTGATGGAATTA+GGG | + | chr1_2:75139773-75139792 | Msa0092590:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | chr1_2:75139922-75139941 | None:intergenic | 25.0% |
| ! | CTCTATTGGAATTTATTCAA+AGG | + | chr1_2:75139988-75140007 | Msa0092590:intron | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCT+TGG | + | chr1_2:75140179-75140198 | Msa0092590:intron | 25.0% |
| ! | TTCTCAAATTTGTGAGATTA+GGG | + | chr1_2:75139723-75139742 | Msa0092590:intron | 25.0% |
| !!! | TTATGTTTTGTGATGGAATT+AGG | + | chr1_2:75139772-75139791 | Msa0092590:intron | 25.0% |
| !!! | TATGTTTTGTGATGGAATTA+GGG | + | chr1_2:75139773-75139792 | Msa0092590:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | chr1_2:75139922-75139941 | None:intergenic | 25.0% |
| ! | CTCTATTGGAATTTATTCAA+AGG | + | chr1_2:75139988-75140007 | Msa0092590:intron | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCT+TGG | + | chr1_2:75140179-75140198 | Msa0092590:intron | 25.0% |
| !! | TTGTCCTACTTTTGTTCAAT+AGG | + | chr1_2:75139523-75139542 | Msa0092590:CDS | 30.0% |
| AAAATACCTCAAACATGATG+AGG | - | chr1_2:75139640-75139659 | None:intergenic | 30.0% | |
| CTTCTCAAATTTGTGAGATT+AGG | + | chr1_2:75139722-75139741 | Msa0092590:intron | 30.0% | |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | + | chr1_2:75139792-75139811 | Msa0092590:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | + | chr1_2:75139793-75139812 | Msa0092590:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | + | chr1_2:75139794-75139813 | Msa0092590:intron | 30.0% |
| CAAATAATAACTTCACCCTT+TGG | + | chr1_2:75140133-75140152 | Msa0092590:intron | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | + | chr1_2:75140272-75140291 | Msa0092590:CDS | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | + | chr1_2:75140465-75140484 | Msa0092590:intron | 30.0% |
| AAGAGAAAAACTTGCCTTAT+CGG | - | chr1_2:75140561-75140580 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTGTATTCTGTGT+TGG | + | chr1_2:75140942-75140961 | Msa0092590:intron | 30.0% |
| !! | TTGTCCTACTTTTGTTCAAT+AGG | + | chr1_2:75139523-75139542 | Msa0092590:CDS | 30.0% |
| AAAATACCTCAAACATGATG+AGG | - | chr1_2:75139640-75139659 | None:intergenic | 30.0% | |
| CTTCTCAAATTTGTGAGATT+AGG | + | chr1_2:75139722-75139741 | Msa0092590:intron | 30.0% | |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | + | chr1_2:75139792-75139811 | Msa0092590:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | + | chr1_2:75139793-75139812 | Msa0092590:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | + | chr1_2:75139794-75139813 | Msa0092590:intron | 30.0% |
| CAAATAATAACTTCACCCTT+TGG | + | chr1_2:75140133-75140152 | Msa0092590:intron | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | + | chr1_2:75140272-75140291 | Msa0092590:CDS | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | + | chr1_2:75140465-75140484 | Msa0092590:intron | 30.0% |
| AAGAGAAAAACTTGCCTTAT+CGG | - | chr1_2:75140561-75140580 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTGTATTCTGTGT+TGG | + | chr1_2:75140942-75140961 | Msa0092590:intron | 30.0% |
| ! | TCGTTTTCTACATTCTTCGT+TGG | + | chr1_2:75139595-75139614 | Msa0092590:CDS | 35.0% |
| CAGATTGTCACACACAAAAT+TGG | - | chr1_2:75139823-75139842 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | + | chr1_2:75139856-75139875 | Msa0092590:intron | 35.0% |
| GAGGAACATATGGAGTATAT+AGG | - | chr1_2:75139912-75139931 | None:intergenic | 35.0% | |
| AACTTCTTCTTGGAAAGAAG+CGG | + | chr1_2:75140189-75140208 | Msa0092590:CDS | 35.0% | |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | + | chr1_2:75140217-75140236 | Msa0092590:CDS | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | + | chr1_2:75140220-75140239 | Msa0092590:CDS | 35.0% |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | - | chr1_2:75140212-75140231 | None:intergenic | 35.0% |
| !! | ATCGGGCATTTGATTTCTTT+TGG | - | chr1_2:75140323-75140342 | None:intergenic | 35.0% |
| GATCAAATAACCTCAGCTTA+TGG | + | chr1_2:75140440-75140459 | Msa0092590:intron | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | + | chr1_2:75140522-75140541 | Msa0092590:CDS | 35.0% | |
| AGAGAAAAACTTGCCTTATC+GGG | - | chr1_2:75140560-75140579 | None:intergenic | 35.0% | |
| AGCATGAAGAGAAAAAGAAG+CGG | + | chr1_2:75140693-75140712 | Msa0092590:CDS | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | chr1_2:75140735-75140754 | Msa0092590:CDS | 35.0% |
| AAAAGACTGACACAATTCTC+AGG | - | chr1_2:75140875-75140894 | None:intergenic | 35.0% | |
| TTCAGTTCTGCTAATCTTTG+TGG | + | chr1_2:75140967-75140986 | Msa0092590:intron | 35.0% | |
| ! | TCGTTTTCTACATTCTTCGT+TGG | + | chr1_2:75139595-75139614 | Msa0092590:CDS | 35.0% |
| CAGATTGTCACACACAAAAT+TGG | - | chr1_2:75139823-75139842 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | + | chr1_2:75139856-75139875 | Msa0092590:intron | 35.0% |
| GAGGAACATATGGAGTATAT+AGG | - | chr1_2:75139912-75139931 | None:intergenic | 35.0% | |
| AACTTCTTCTTGGAAAGAAG+CGG | + | chr1_2:75140189-75140208 | Msa0092590:CDS | 35.0% | |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | + | chr1_2:75140217-75140236 | Msa0092590:CDS | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | + | chr1_2:75140220-75140239 | Msa0092590:CDS | 35.0% |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | - | chr1_2:75140212-75140231 | None:intergenic | 35.0% |
| !! | ATCGGGCATTTGATTTCTTT+TGG | - | chr1_2:75140323-75140342 | None:intergenic | 35.0% |
| GATCAAATAACCTCAGCTTA+TGG | + | chr1_2:75140440-75140459 | Msa0092590:intron | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | + | chr1_2:75140522-75140541 | Msa0092590:CDS | 35.0% | |
| AGAGAAAAACTTGCCTTATC+GGG | - | chr1_2:75140560-75140579 | None:intergenic | 35.0% | |
| AGCATGAAGAGAAAAAGAAG+CGG | + | chr1_2:75140693-75140712 | Msa0092590:CDS | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | chr1_2:75140735-75140754 | Msa0092590:CDS | 35.0% |
| AAAAGACTGACACAATTCTC+AGG | - | chr1_2:75140875-75140894 | None:intergenic | 35.0% | |
| TTCAGTTCTGCTAATCTTTG+TGG | + | chr1_2:75140967-75140986 | Msa0092590:intron | 35.0% | |
| GGCACCTATTGAACAAAAGT+AGG | - | chr1_2:75139530-75139549 | None:intergenic | 40.0% | |
| CTCAAACATGATGAGGACAA+GGG | - | chr1_2:75139633-75139652 | None:intergenic | 40.0% | |
| GTTGAATTACCCATTTGCGA+CGG | - | chr1_2:75140067-75140086 | None:intergenic | 40.0% | |
| GATGGAGAGCTTCTTTATGA+TGG | + | chr1_2:75140290-75140309 | Msa0092590:CDS | 40.0% | |
| TCCAACGTCTTTGCGTAAAT+CGG | - | chr1_2:75140341-75140360 | None:intergenic | 40.0% | |
| ATTTACGCAAAGACGTTGGA+AGG | + | chr1_2:75140341-75140360 | Msa0092590:CDS | 40.0% | |
| GAAGAAACAACCATAAGCTG+AGG | - | chr1_2:75140453-75140472 | None:intergenic | 40.0% | |
| GTATAATTGGACACCACTTG+AGG | - | chr1_2:75140538-75140557 | None:intergenic | 40.0% | |
| GTGTCCAATTATACCCGATA+AGG | + | chr1_2:75140544-75140563 | Msa0092590:intron | 40.0% | |
| CTTGCCTTATCGGGTATAAT+TGG | - | chr1_2:75140551-75140570 | None:intergenic | 40.0% | |
| TCTCTAACAGCATGCATACT+TGG | + | chr1_2:75140637-75140656 | Msa0092590:intron | 40.0% | |
| ATGAAGAGAAAAAGAAGCGG+TGG | + | chr1_2:75140696-75140715 | Msa0092590:CDS | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | chr1_2:75140734-75140753 | Msa0092590:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | + | chr1_2:75140758-75140777 | Msa0092590:CDS | 40.0% | |
| ACTGTGTTATGCAATGCTCT+TGG | + | chr1_2:75140786-75140805 | Msa0092590:intron | 40.0% | |
| AGGAGCAGTTACTGATAGAT+TGG | + | chr1_2:75140820-75140839 | Msa0092590:intron | 40.0% | |
| ACCATGTTATGCTATGCTCT+TGG | + | chr1_2:75140849-75140868 | Msa0092590:intron | 40.0% | |
| GGCACCTATTGAACAAAAGT+AGG | - | chr1_2:75139530-75139549 | None:intergenic | 40.0% | |
| CTCAAACATGATGAGGACAA+GGG | - | chr1_2:75139633-75139652 | None:intergenic | 40.0% | |
| GTTGAATTACCCATTTGCGA+CGG | - | chr1_2:75140067-75140086 | None:intergenic | 40.0% | |
| GATGGAGAGCTTCTTTATGA+TGG | + | chr1_2:75140290-75140309 | Msa0092590:CDS | 40.0% | |
| TCCAACGTCTTTGCGTAAAT+CGG | - | chr1_2:75140341-75140360 | None:intergenic | 40.0% | |
| ATTTACGCAAAGACGTTGGA+AGG | + | chr1_2:75140341-75140360 | Msa0092590:CDS | 40.0% | |
| GAAGAAACAACCATAAGCTG+AGG | - | chr1_2:75140453-75140472 | None:intergenic | 40.0% | |
| GTATAATTGGACACCACTTG+AGG | - | chr1_2:75140538-75140557 | None:intergenic | 40.0% | |
| GTGTCCAATTATACCCGATA+AGG | + | chr1_2:75140544-75140563 | Msa0092590:intron | 40.0% | |
| CTTGCCTTATCGGGTATAAT+TGG | - | chr1_2:75140551-75140570 | None:intergenic | 40.0% | |
| TCTCTAACAGCATGCATACT+TGG | + | chr1_2:75140637-75140656 | Msa0092590:intron | 40.0% | |
| ATGAAGAGAAAAAGAAGCGG+TGG | + | chr1_2:75140696-75140715 | Msa0092590:CDS | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | chr1_2:75140734-75140753 | Msa0092590:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | + | chr1_2:75140758-75140777 | Msa0092590:CDS | 40.0% | |
| ACTGTGTTATGCAATGCTCT+TGG | + | chr1_2:75140786-75140805 | Msa0092590:intron | 40.0% | |
| AGGAGCAGTTACTGATAGAT+TGG | + | chr1_2:75140820-75140839 | Msa0092590:intron | 40.0% | |
| ACCATGTTATGCTATGCTCT+TGG | + | chr1_2:75140849-75140868 | Msa0092590:intron | 40.0% | |
| AAACAAACGCGATCAACGAG+TGG | - | chr1_2:75139564-75139583 | None:intergenic | 45.0% | |
| AAACATGATGAGGACAAGGG+AGG | - | chr1_2:75139630-75139649 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGACA+AGG | - | chr1_2:75139634-75139653 | None:intergenic | 45.0% | |
| CCTTGTCCTCATCATGTTTG+AGG | + | chr1_2:75139631-75139650 | Msa0092590:intron | 45.0% | |
| CAGCCTAGACTCTCTCTAAT+GGG | + | chr1_2:75140022-75140041 | Msa0092590:CDS | 45.0% | |
| TCTTCTTGGAAAGAAGCGGA+AGG | + | chr1_2:75140193-75140212 | Msa0092590:CDS | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | + | chr1_2:75140233-75140252 | Msa0092590:CDS | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | + | chr1_2:75140234-75140253 | Msa0092590:CDS | 45.0% | |
| CCAACGTCTTTGCGTAAATC+GGG | - | chr1_2:75140340-75140359 | None:intergenic | 45.0% | |
| GTAACTGCTCCTCTATTCTC+AGG | - | chr1_2:75140812-75140831 | None:intergenic | 45.0% | |
| ! | GCCAAGAGCATAGCATAACA+TGG | - | chr1_2:75140853-75140872 | None:intergenic | 45.0% |
| AAACAAACGCGATCAACGAG+TGG | - | chr1_2:75139564-75139583 | None:intergenic | 45.0% | |
| AAACATGATGAGGACAAGGG+AGG | - | chr1_2:75139630-75139649 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGACA+AGG | - | chr1_2:75139634-75139653 | None:intergenic | 45.0% | |
| CCTTGTCCTCATCATGTTTG+AGG | + | chr1_2:75139631-75139650 | Msa0092590:intron | 45.0% | |
| CAGCCTAGACTCTCTCTAAT+GGG | + | chr1_2:75140022-75140041 | Msa0092590:CDS | 45.0% | |
| TCTTCTTGGAAAGAAGCGGA+AGG | + | chr1_2:75140193-75140212 | Msa0092590:CDS | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | + | chr1_2:75140233-75140252 | Msa0092590:CDS | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | + | chr1_2:75140234-75140253 | Msa0092590:CDS | 45.0% | |
| CCAACGTCTTTGCGTAAATC+GGG | - | chr1_2:75140340-75140359 | None:intergenic | 45.0% | |
| GTAACTGCTCCTCTATTCTC+AGG | - | chr1_2:75140812-75140831 | None:intergenic | 45.0% | |
| ! | GCCAAGAGCATAGCATAACA+TGG | - | chr1_2:75140853-75140872 | None:intergenic | 45.0% |
| CAACGAGTGGCTGTGGATAT+CGG | - | chr1_2:75139551-75139570 | None:intergenic | 50.0% | |
| TTAGAGAGAGTCTAGGCTGC+TGG | - | chr1_2:75140021-75140040 | None:intergenic | 50.0% | |
| GCAGCCTAGACTCTCTCTAA+TGG | + | chr1_2:75140021-75140040 | Msa0092590:CDS | 50.0% | |
| GTGCCCATTAGAGAGAGTCT+AGG | - | chr1_2:75140028-75140047 | None:intergenic | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | chr1_2:75140247-75140266 | Msa0092590:CDS | 50.0% | |
| CCCGATTTACGCAAAGACGT+TGG | + | chr1_2:75140337-75140356 | Msa0092590:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | chr1_2:75140742-75140761 | Msa0092590:CDS | 50.0% | |
| TGCTCTTGGCCTGAGAATAG+AGG | + | chr1_2:75140800-75140819 | Msa0092590:intron | 50.0% | |
| CAACGAGTGGCTGTGGATAT+CGG | - | chr1_2:75139551-75139570 | None:intergenic | 50.0% | |
| TTAGAGAGAGTCTAGGCTGC+TGG | - | chr1_2:75140021-75140040 | None:intergenic | 50.0% | |
| GCAGCCTAGACTCTCTCTAA+TGG | + | chr1_2:75140021-75140040 | Msa0092590:CDS | 50.0% | |
| GTGCCCATTAGAGAGAGTCT+AGG | - | chr1_2:75140028-75140047 | None:intergenic | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | chr1_2:75140247-75140266 | Msa0092590:CDS | 50.0% | |
| CCCGATTTACGCAAAGACGT+TGG | + | chr1_2:75140337-75140356 | Msa0092590:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | chr1_2:75140742-75140761 | Msa0092590:CDS | 50.0% | |
| TGCTCTTGGCCTGAGAATAG+AGG | + | chr1_2:75140800-75140819 | Msa0092590:intron | 50.0% | |
| TTACCCATTTGCGACGGCAG+CGG | - | chr1_2:75140061-75140080 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | chr1_2:75140253-75140272 | None:intergenic | 55.0% |
| TTACCCATTTGCGACGGCAG+CGG | - | chr1_2:75140061-75140080 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | chr1_2:75140253-75140272 | None:intergenic | 55.0% |
| ACGCGATCAACGAGTGGCTG+TGG | - | chr1_2:75139558-75139577 | None:intergenic | 60.0% | |
| ACGCGATCAACGAGTGGCTG+TGG | - | chr1_2:75139558-75139577 | None:intergenic | 60.0% | |
| ATCGCCGCTGCCGTCGCAAA+TGG | + | chr1_2:75140054-75140073 | Msa0092590:CDS | 65.0% | |
| TCGCCGCTGCCGTCGCAAAT+GGG | + | chr1_2:75140055-75140074 | Msa0092590:CDS | 65.0% | |
| ATCGCCGCTGCCGTCGCAAA+TGG | + | chr1_2:75140054-75140073 | Msa0092590:CDS | 65.0% | |
| TCGCCGCTGCCGTCGCAAAT+GGG | + | chr1_2:75140055-75140074 | Msa0092590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 75139523 | 75141018 | 75139523 | ID=Msa0092590;Name=Msa0092590 |
| chr1_2 | mRNA | 75139523 | 75141018 | 75139523 | ID=Msa0092590-mRNA-1;Parent=Msa0092590;Name=Msa0092590-mRNA-1;_AED=0.24;_eAED=0.34;_QI=0|0.2|0.33|1|0.2|0.5|6|0|194 |
| chr1_2 | exon | 75139523 | 75139645 | 75139523 | ID=Msa0092590-mRNA-1:exon:26470;Parent=Msa0092590-mRNA-1 |
| chr1_2 | exon | 75140010 | 75140076 | 75140010 | ID=Msa0092590-mRNA-1:exon:26471;Parent=Msa0092590-mRNA-1 |
| chr1_2 | exon | 75140183 | 75140362 | 75140183 | ID=Msa0092590-mRNA-1:exon:26472;Parent=Msa0092590-mRNA-1 |
| chr1_2 | exon | 75140512 | 75140543 | 75140512 | ID=Msa0092590-mRNA-1:exon:26473;Parent=Msa0092590-mRNA-1 |
| chr1_2 | exon | 75140647 | 75140779 | 75140647 | ID=Msa0092590-mRNA-1:exon:26474;Parent=Msa0092590-mRNA-1 |
| chr1_2 | exon | 75140972 | 75141018 | 75140972 | ID=Msa0092590-mRNA-1:exon:26475;Parent=Msa0092590-mRNA-1 |
| chr1_2 | CDS | 75139523 | 75139645 | 75139523 | ID=Msa0092590-mRNA-1:cds;Parent=Msa0092590-mRNA-1 |
| chr1_2 | CDS | 75140010 | 75140076 | 75140010 | ID=Msa0092590-mRNA-1:cds;Parent=Msa0092590-mRNA-1 |
| chr1_2 | CDS | 75140183 | 75140362 | 75140183 | ID=Msa0092590-mRNA-1:cds;Parent=Msa0092590-mRNA-1 |
| chr1_2 | CDS | 75140512 | 75140543 | 75140512 | ID=Msa0092590-mRNA-1:cds;Parent=Msa0092590-mRNA-1 |
| chr1_2 | CDS | 75140647 | 75140779 | 75140647 | ID=Msa0092590-mRNA-1:cds;Parent=Msa0092590-mRNA-1 |
| chr1_2 | CDS | 75140972 | 75141018 | 75140972 | ID=Msa0092590-mRNA-1:cds;Parent=Msa0092590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
