Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419240 | XP_003603787.2 | 81.379 | 145 | 19 | 2 | 1 | 137 | 1 | 145 | 4.75e-71 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419240 | I3S629 | 81.379 | 145 | 19 | 2 | 1 | 137 | 1 | 145 | 2.27e-71 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa0419240 | 0.908421 | 1.741668e-81 | -8.615850e-47 |
| Msa0092530 | Msa0419240 | 0.802064 | 6.698826e-49 | -8.615850e-47 |
| Msa0092550 | Msa0419240 | 0.886208 | 4.178475e-72 | -8.615850e-47 |
| Msa0092590 | Msa0419240 | 0.831908 | 1.278580e-55 | -8.615850e-47 |
| Msa0234270 | Msa0419240 | 0.812581 | 3.945055e-51 | -8.615850e-47 |
| Msa0419240 | Msa0465150 | 0.817350 | 3.452151e-52 | -8.615850e-47 |
| Msa0419240 | Msa0465180 | 0.800295 | 1.540967e-48 | -8.615850e-47 |
| Msa0419240 | Msa0465200 | 0.812206 | 4.764380e-51 | -8.615850e-47 |
| Msa0419240 | Msa1119930 | 0.819615 | 1.058453e-52 | -8.615850e-47 |
| Msa0419240 | Msa1349100 | 0.803640 | 3.165145e-49 | -8.615850e-47 |
| Msa0419240 | Msa1398610 | 0.821395 | 4.130351e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419240 | MtrunA17_Chr3g0143041 | 81.379 | 145 | 19 | 2 | 1 | 137 | 1 | 145 | 4.37e-75 | 221 |
| Msa0419240 | MtrunA17_Chr3g0143031 | 81.379 | 145 | 19 | 2 | 1 | 137 | 1 | 145 | 4.37e-75 | 221 |
| Msa0419240 | MtrunA17_Chr3g0142551 | 87.273 | 110 | 6 | 2 | 25 | 126 | 1 | 110 | 2.01e-59 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCCTTATCGGGTATAAT+TGG | 0.191469 | 3_2:-67155029 | None:intergenic |
| TCCAATGTCTTTGCGTAAAT+CGG | 0.255106 | 3_2:-67154798 | None:intergenic |
| ATCGGGCATTTGATTTCTTT+TGG | 0.267105 | 3_2:-67154780 | None:intergenic |
| ACAATAGAAAGAAAACTTCT+TGG | 0.355619 | 3_2:+67154639 | Msa0419240:intron |
| CAACGAGTGGCTGTGGATAT+CGG | 0.369724 | 3_2:-67154014 | None:intergenic |
| GCAGCCTAGACTCTCTCTAA+TGG | 0.370128 | 3_2:+67154481 | Msa0419240:CDS |
| ATCGCCGCTGCCGTCGCAAA+TGG | 0.374917 | 3_2:+67154514 | Msa0419240:CDS |
| TTCAGTTCTGCTAATCTTTG+TGG | 0.391968 | 3_2:+67155522 | Msa0419240:intron |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.393602 | 3_2:-67154710 | None:intergenic |
| CCTCGTCCTCATCATGTTTG+AGG | 0.410618 | 3_2:+67154097 | Msa0419240:exon |
| CAGCCTAGACTCTCTCTAAT+GGG | 0.439535 | 3_2:+67154482 | Msa0419240:CDS |
| CCAATGTCTTTGCGTAAATC+GGG | 0.445645 | 3_2:-67154797 | None:intergenic |
| AAAGAGGAGCTGTTACTGAT+AGG | 0.462033 | 3_2:+67155239 | Msa0419240:CDS |
| TCGCCGCTGCCGTCGCAAAT+GGG | 0.476476 | 3_2:+67154515 | Msa0419240:CDS |
| ACGCGATCAACGAGTGGCTG+TGG | 0.492879 | 3_2:-67154021 | None:intergenic |
| GTTCTGCTAATCTTTGTGGC+AGG | 0.493615 | 3_2:+67155526 | Msa0419240:intron |
| ATTCTGTATTATGCAACATC+AGG | 0.496837 | 3_2:-67155562 | None:intergenic |
| GTGTCCAATTATACCCGATA+AGG | 0.504935 | 3_2:+67155025 | Msa0419240:CDS |
| CCCGATTTACGCAAAGACAT+TGG | 0.508193 | 3_2:+67154797 | Msa0419240:CDS |
| TTACCCATTTGCGACGGCAG+CGG | 0.526111 | 3_2:-67154518 | None:intergenic |
| GATGGAGAGCTTCTTTATGA+TGG | 0.535629 | 3_2:+67154750 | Msa0419240:CDS |
| TTAGAGAGAGTCTAGGCTGC+TGG | 0.541773 | 3_2:-67154478 | None:intergenic |
| GCGTCTTGAGAAAGGGAAAG+AGG | 0.542494 | 3_2:+67155223 | Msa0419240:CDS |
| ACAGAGGAGGATCTTCTCCA+TGG | 0.556428 | 3_2:+67154693 | Msa0419240:CDS |
| CCTCAAACATGATGAGGACG+AGG | 0.568612 | 3_2:-67154097 | None:intergenic |
| TAGATACAATAGACCTCAAG+TGG | 0.580845 | 3_2:+67155003 | Msa0419240:CDS |
| ATTTACGCAAAGACATTGGA+AGG | 0.582754 | 3_2:+67154801 | Msa0419240:CDS |
| GAAAACTTCTTGGTAAGAAG+CGG | 0.588580 | 3_2:+67154649 | Msa0419240:CDS |
| GTGCCCATTAGAGAGAGTCT+AGG | 0.590956 | 3_2:-67154485 | None:intergenic |
| AAAATACCTCAAACATGATG+AGG | 0.597319 | 3_2:-67154103 | None:intergenic |
| CAGAGGAGGATCTTCTCCAT+GGG | 0.608293 | 3_2:+67154694 | Msa0419240:CDS |
| AAAAGTAGAAAGCACAGAGG+AGG | 0.614434 | 3_2:+67154680 | Msa0419240:CDS |
| GTATAATTGGACACCACTTG+AGG | 0.631367 | 3_2:-67155016 | None:intergenic |
| AAACAAACGCGATCAACGAG+TGG | 0.639946 | 3_2:-67154027 | None:intergenic |
| ACTTCTTGGTAAGAAGCGGA+AGG | 0.651248 | 3_2:+67154653 | Msa0419240:CDS |
| TCTCCATGGGAAGAAGCCAA+AGG | 0.672590 | 3_2:+67154707 | Msa0419240:CDS |
| GTTGAATTACCCATTTGCGA+CGG | 0.680657 | 3_2:-67154524 | None:intergenic |
| AAACATGATGAGGACGAGGG+AGG | 0.707041 | 3_2:-67154093 | None:intergenic |
| CTCAAACATGATGAGGACGA+GGG | 0.717622 | 3_2:-67154096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAATAAATCAATTCAA+AGG | - | chr3_2:67154216-67154235 | None:intergenic | 10.0% |
| !! | AAAATAATAACAATAAAATG+AGG | - | chr3_2:67154391-67154410 | None:intergenic | 10.0% |
| !! | ATAAAAATAAATCAATTCAA+AGG | - | chr3_2:67154216-67154235 | None:intergenic | 10.0% |
| !! | AAAATAATAACAATAAAATG+AGG | - | chr3_2:67154391-67154410 | None:intergenic | 10.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | chr3_2:67154428-67154447 | None:intergenic | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | chr3_2:67154428-67154447 | None:intergenic | 15.0% |
| !! | ATTATCAACTAGAATTGAAA+AGG | - | chr3_2:67154133-67154152 | None:intergenic | 20.0% |
| !!! | TTTATTTTTATGTTTTGCGA+TGG | + | chr3_2:67154225-67154244 | Msa0419240:intron | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | + | chr3_2:67154301-67154320 | Msa0419240:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | + | chr3_2:67154302-67154321 | Msa0419240:intron | 20.0% |
| !! | ATACTTATGAAAATAGGATT+AGG | - | chr3_2:67154549-67154568 | None:intergenic | 20.0% |
| !! | AGCAAAATACTTATGAAAAT+AGG | - | chr3_2:67154555-67154574 | None:intergenic | 20.0% |
| !! | TGAAATAATAAGAATCCAAA+GGG | - | chr3_2:67154614-67154633 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAATCCAA+AGG | - | chr3_2:67154615-67154634 | None:intergenic | 20.0% |
| !!! | TGTGCATATTTTAATTCTTT+AGG | + | chr3_2:67155086-67155105 | Msa0419240:intron | 20.0% |
| !! | ATTATCAACTAGAATTGAAA+AGG | - | chr3_2:67154133-67154152 | None:intergenic | 20.0% |
| !!! | TTTATTTTTATGTTTTGCGA+TGG | + | chr3_2:67154225-67154244 | Msa0419240:intron | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | + | chr3_2:67154301-67154320 | Msa0419240:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | + | chr3_2:67154302-67154321 | Msa0419240:intron | 20.0% |
| !! | ATACTTATGAAAATAGGATT+AGG | - | chr3_2:67154549-67154568 | None:intergenic | 20.0% |
| !! | AGCAAAATACTTATGAAAAT+AGG | - | chr3_2:67154555-67154574 | None:intergenic | 20.0% |
| !! | TGAAATAATAAGAATCCAAA+GGG | - | chr3_2:67154614-67154633 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAATCCAA+AGG | - | chr3_2:67154615-67154634 | None:intergenic | 20.0% |
| !!! | TGTGCATATTTTAATTCTTT+AGG | + | chr3_2:67155086-67155105 | Msa0419240:intron | 20.0% |
| ! | TTCTCAAATTTGTGAGATTA+GGG | + | chr3_2:67154183-67154202 | Msa0419240:intron | 25.0% |
| !! | AGCGTTTCAAAATTTTGAAT+TGG | + | chr3_2:67154252-67154271 | Msa0419240:intron | 25.0% |
| !! | GCGTTTCAAAATTTTGAATT+GGG | + | chr3_2:67154253-67154272 | Msa0419240:intron | 25.0% |
| !! | CGTTTCAAAATTTTGAATTG+GGG | + | chr3_2:67154254-67154273 | Msa0419240:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | chr3_2:67154382-67154401 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | + | chr3_2:67154434-67154453 | Msa0419240:intron | 25.0% |
| ! | ATAATAATAACTTCACCCTT+TGG | + | chr3_2:67154596-67154615 | Msa0419240:intron | 25.0% |
| ! | ACAATAGAAAGAAAACTTCT+TGG | + | chr3_2:67154639-67154658 | Msa0419240:intron | 25.0% |
| ! | TTCTCAAATTTGTGAGATTA+GGG | + | chr3_2:67154183-67154202 | Msa0419240:intron | 25.0% |
| !! | AGCGTTTCAAAATTTTGAAT+TGG | + | chr3_2:67154252-67154271 | Msa0419240:intron | 25.0% |
| !! | GCGTTTCAAAATTTTGAATT+GGG | + | chr3_2:67154253-67154272 | Msa0419240:intron | 25.0% |
| !! | CGTTTCAAAATTTTGAATTG+GGG | + | chr3_2:67154254-67154273 | Msa0419240:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | chr3_2:67154382-67154401 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | + | chr3_2:67154434-67154453 | Msa0419240:intron | 25.0% |
| ! | ATAATAATAACTTCACCCTT+TGG | + | chr3_2:67154596-67154615 | Msa0419240:intron | 25.0% |
| ! | ACAATAGAAAGAAAACTTCT+TGG | + | chr3_2:67154639-67154658 | Msa0419240:intron | 25.0% |
| AAAATACCTCAAACATGATG+AGG | - | chr3_2:67154106-67154125 | None:intergenic | 30.0% | |
| CTTCTCAAATTTGTGAGATT+AGG | + | chr3_2:67154182-67154201 | Msa0419240:intron | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | + | chr3_2:67154732-67154751 | Msa0419240:CDS | 30.0% |
| AAGAGAAAAACTTGCCTTAT+CGG | - | chr3_2:67155042-67155061 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTGTATTCTGTGT+TGG | + | chr3_2:67155497-67155516 | Msa0419240:intron | 30.0% |
| AAAATACCTCAAACATGATG+AGG | - | chr3_2:67154106-67154125 | None:intergenic | 30.0% | |
| CTTCTCAAATTTGTGAGATT+AGG | + | chr3_2:67154182-67154201 | Msa0419240:intron | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | + | chr3_2:67154732-67154751 | Msa0419240:CDS | 30.0% |
| AAGAGAAAAACTTGCCTTAT+CGG | - | chr3_2:67155042-67155061 | None:intergenic | 30.0% | |
| !!! | CTTTGTTTTGTATTCTGTGT+TGG | + | chr3_2:67155497-67155516 | Msa0419240:intron | 30.0% |
| GGCACCTATTGAACAAAAAT+AGG | - | chr3_2:67153996-67154015 | None:intergenic | 35.0% | |
| ! | TCGTTTTCTACATTCTTCGT+TGG | + | chr3_2:67154061-67154080 | Msa0419240:five_prime_UTR | 35.0% |
| CAGATTGTCACACACAAAAT+TGG | - | chr3_2:67154283-67154302 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | + | chr3_2:67154316-67154335 | Msa0419240:intron | 35.0% |
| GAGGAACATATGGAGTATAT+AGG | - | chr3_2:67154372-67154391 | None:intergenic | 35.0% | |
| CTCTGTTGGAATTTATTCGA+AGG | + | chr3_2:67154448-67154467 | Msa0419240:intron | 35.0% | |
| GAAAACTTCTTGGTAAGAAG+CGG | + | chr3_2:67154649-67154668 | Msa0419240:CDS | 35.0% | |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | - | chr3_2:67154672-67154691 | None:intergenic | 35.0% |
| !! | ATCGGGCATTTGATTTCTTT+TGG | - | chr3_2:67154783-67154802 | None:intergenic | 35.0% |
| TCCAATGTCTTTGCGTAAAT+CGG | - | chr3_2:67154801-67154820 | None:intergenic | 35.0% | |
| ATTTACGCAAAGACATTGGA+AGG | + | chr3_2:67154801-67154820 | Msa0419240:CDS | 35.0% | |
| GATCAAATAACCTCAGCTTA+TGG | + | chr3_2:67154926-67154945 | Msa0419240:intron | 35.0% | |
| !! | GGTTGTTTCTTCTCTTGTTA+TGG | + | chr3_2:67154947-67154966 | Msa0419240:intron | 35.0% |
| TAGATACAATAGACCTCAAG+TGG | + | chr3_2:67155003-67155022 | Msa0419240:CDS | 35.0% | |
| AGAGAAAAACTTGCCTTATC+GGG | - | chr3_2:67155041-67155060 | None:intergenic | 35.0% | |
| AGCATGAAGAGAAAAAGAAG+CGG | + | chr3_2:67155174-67155193 | Msa0419240:CDS | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | chr3_2:67155216-67155235 | Msa0419240:CDS | 35.0% |
| AACGCTCTAATAGCATAACA+TGG | - | chr3_2:67155329-67155348 | None:intergenic | 35.0% | |
| AAAAGACTGACACAATTCTC+AGG | - | chr3_2:67155430-67155449 | None:intergenic | 35.0% | |
| TTCAGTTCTGCTAATCTTTG+TGG | + | chr3_2:67155522-67155541 | Msa0419240:intron | 35.0% | |
| GGCACCTATTGAACAAAAAT+AGG | - | chr3_2:67153996-67154015 | None:intergenic | 35.0% | |
| ! | TCGTTTTCTACATTCTTCGT+TGG | + | chr3_2:67154061-67154080 | Msa0419240:five_prime_UTR | 35.0% |
| CAGATTGTCACACACAAAAT+TGG | - | chr3_2:67154283-67154302 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | + | chr3_2:67154316-67154335 | Msa0419240:intron | 35.0% |
| GAGGAACATATGGAGTATAT+AGG | - | chr3_2:67154372-67154391 | None:intergenic | 35.0% | |
| CTCTGTTGGAATTTATTCGA+AGG | + | chr3_2:67154448-67154467 | Msa0419240:intron | 35.0% | |
| GAAAACTTCTTGGTAAGAAG+CGG | + | chr3_2:67154649-67154668 | Msa0419240:CDS | 35.0% | |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | - | chr3_2:67154672-67154691 | None:intergenic | 35.0% |
| !! | ATCGGGCATTTGATTTCTTT+TGG | - | chr3_2:67154783-67154802 | None:intergenic | 35.0% |
| TCCAATGTCTTTGCGTAAAT+CGG | - | chr3_2:67154801-67154820 | None:intergenic | 35.0% | |
| ATTTACGCAAAGACATTGGA+AGG | + | chr3_2:67154801-67154820 | Msa0419240:CDS | 35.0% | |
| GATCAAATAACCTCAGCTTA+TGG | + | chr3_2:67154926-67154945 | Msa0419240:intron | 35.0% | |
| !! | GGTTGTTTCTTCTCTTGTTA+TGG | + | chr3_2:67154947-67154966 | Msa0419240:intron | 35.0% |
| TAGATACAATAGACCTCAAG+TGG | + | chr3_2:67155003-67155022 | Msa0419240:CDS | 35.0% | |
| AGAGAAAAACTTGCCTTATC+GGG | - | chr3_2:67155041-67155060 | None:intergenic | 35.0% | |
| AGCATGAAGAGAAAAAGAAG+CGG | + | chr3_2:67155174-67155193 | Msa0419240:CDS | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | chr3_2:67155216-67155235 | Msa0419240:CDS | 35.0% |
| AACGCTCTAATAGCATAACA+TGG | - | chr3_2:67155329-67155348 | None:intergenic | 35.0% | |
| AAAAGACTGACACAATTCTC+AGG | - | chr3_2:67155430-67155449 | None:intergenic | 35.0% | |
| TTCAGTTCTGCTAATCTTTG+TGG | + | chr3_2:67155522-67155541 | Msa0419240:intron | 35.0% | |
| GTTGAATTACCCATTTGCGA+CGG | - | chr3_2:67154527-67154546 | None:intergenic | 40.0% | |
| ! | GCAAAAAGTAGAAAGCACAG+AGG | + | chr3_2:67154677-67154696 | Msa0419240:CDS | 40.0% |
| ! | AAAAGTAGAAAGCACAGAGG+AGG | + | chr3_2:67154680-67154699 | Msa0419240:CDS | 40.0% |
| GATGGAGAGCTTCTTTATGA+TGG | + | chr3_2:67154750-67154769 | Msa0419240:CDS | 40.0% | |
| CCAATGTCTTTGCGTAAATC+GGG | - | chr3_2:67154800-67154819 | None:intergenic | 40.0% | |
| GAAGAAACAACCATAAGCTG+AGG | - | chr3_2:67154939-67154958 | None:intergenic | 40.0% | |
| GTATAATTGGACACCACTTG+AGG | - | chr3_2:67155019-67155038 | None:intergenic | 40.0% | |
| GTGTCCAATTATACCCGATA+AGG | + | chr3_2:67155025-67155044 | Msa0419240:CDS | 40.0% | |
| CTTGCCTTATCGGGTATAAT+TGG | - | chr3_2:67155032-67155051 | None:intergenic | 40.0% | |
| TCTCTAACAGCATGCATACT+TGG | + | chr3_2:67155118-67155137 | Msa0419240:intron | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | chr3_2:67155215-67155234 | Msa0419240:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | + | chr3_2:67155239-67155258 | Msa0419240:CDS | 40.0% | |
| ACCATGTTATGCAATGCTCT+TGG | + | chr3_2:67155267-67155286 | Msa0419240:intron | 40.0% | |
| ATAGAGGAGCAGTTACTGAT+AGG | + | chr3_2:67155297-67155316 | Msa0419240:intron | 40.0% | |
| AGGAGCAGTTACTGATAGAT+TGG | + | chr3_2:67155375-67155394 | Msa0419240:intron | 40.0% | |
| ACCATGTTATGCTATGCTCT+TGG | + | chr3_2:67155404-67155423 | Msa0419240:intron | 40.0% | |
| GTTGAATTACCCATTTGCGA+CGG | - | chr3_2:67154527-67154546 | None:intergenic | 40.0% | |
| ! | GCAAAAAGTAGAAAGCACAG+AGG | + | chr3_2:67154677-67154696 | Msa0419240:CDS | 40.0% |
| ! | AAAAGTAGAAAGCACAGAGG+AGG | + | chr3_2:67154680-67154699 | Msa0419240:CDS | 40.0% |
| GATGGAGAGCTTCTTTATGA+TGG | + | chr3_2:67154750-67154769 | Msa0419240:CDS | 40.0% | |
| CCAATGTCTTTGCGTAAATC+GGG | - | chr3_2:67154800-67154819 | None:intergenic | 40.0% | |
| GAAGAAACAACCATAAGCTG+AGG | - | chr3_2:67154939-67154958 | None:intergenic | 40.0% | |
| GTATAATTGGACACCACTTG+AGG | - | chr3_2:67155019-67155038 | None:intergenic | 40.0% | |
| GTGTCCAATTATACCCGATA+AGG | + | chr3_2:67155025-67155044 | Msa0419240:CDS | 40.0% | |
| CTTGCCTTATCGGGTATAAT+TGG | - | chr3_2:67155032-67155051 | None:intergenic | 40.0% | |
| TCTCTAACAGCATGCATACT+TGG | + | chr3_2:67155118-67155137 | Msa0419240:intron | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | chr3_2:67155215-67155234 | Msa0419240:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | + | chr3_2:67155239-67155258 | Msa0419240:CDS | 40.0% | |
| ACCATGTTATGCAATGCTCT+TGG | + | chr3_2:67155267-67155286 | Msa0419240:intron | 40.0% | |
| ATAGAGGAGCAGTTACTGAT+AGG | + | chr3_2:67155297-67155316 | Msa0419240:intron | 40.0% | |
| AGGAGCAGTTACTGATAGAT+TGG | + | chr3_2:67155375-67155394 | Msa0419240:intron | 40.0% | |
| ACCATGTTATGCTATGCTCT+TGG | + | chr3_2:67155404-67155423 | Msa0419240:intron | 40.0% | |
| AAACAAACGCGATCAACGAG+TGG | - | chr3_2:67154030-67154049 | None:intergenic | 45.0% | |
| CTCAAACATGATGAGGACGA+GGG | - | chr3_2:67154099-67154118 | None:intergenic | 45.0% | |
| CAGCCTAGACTCTCTCTAAT+GGG | + | chr3_2:67154482-67154501 | Msa0419240:CDS | 45.0% | |
| ACTTCTTGGTAAGAAGCGGA+AGG | + | chr3_2:67154653-67154672 | Msa0419240:CDS | 45.0% | |
| CCCGATTTACGCAAAGACAT+TGG | + | chr3_2:67154797-67154816 | Msa0419240:CDS | 45.0% | |
| !! | GCCAAGAGCATTGCATAACA+TGG | - | chr3_2:67155271-67155290 | None:intergenic | 45.0% |
| TTATGCAATGCTCTTGGCCT+GGG | + | chr3_2:67155273-67155292 | Msa0419240:intron | 45.0% | |
| ! | AGAGCGTTATGCAATGCTCT+TGG | + | chr3_2:67155341-67155360 | Msa0419240:intron | 45.0% |
| ! | TGCTCTTGGCTTGAGAATAG+AGG | + | chr3_2:67155355-67155374 | Msa0419240:intron | 45.0% |
| ! | GCCAAGAGCATAGCATAACA+TGG | - | chr3_2:67155408-67155427 | None:intergenic | 45.0% |
| GTTCTGCTAATCTTTGTGGC+AGG | + | chr3_2:67155526-67155545 | Msa0419240:intron | 45.0% | |
| AAACAAACGCGATCAACGAG+TGG | - | chr3_2:67154030-67154049 | None:intergenic | 45.0% | |
| CTCAAACATGATGAGGACGA+GGG | - | chr3_2:67154099-67154118 | None:intergenic | 45.0% | |
| CAGCCTAGACTCTCTCTAAT+GGG | + | chr3_2:67154482-67154501 | Msa0419240:CDS | 45.0% | |
| ACTTCTTGGTAAGAAGCGGA+AGG | + | chr3_2:67154653-67154672 | Msa0419240:CDS | 45.0% | |
| CCCGATTTACGCAAAGACAT+TGG | + | chr3_2:67154797-67154816 | Msa0419240:CDS | 45.0% | |
| !! | GCCAAGAGCATTGCATAACA+TGG | - | chr3_2:67155271-67155290 | None:intergenic | 45.0% |
| TTATGCAATGCTCTTGGCCT+GGG | + | chr3_2:67155273-67155292 | Msa0419240:intron | 45.0% | |
| ! | AGAGCGTTATGCAATGCTCT+TGG | + | chr3_2:67155341-67155360 | Msa0419240:intron | 45.0% |
| ! | TGCTCTTGGCTTGAGAATAG+AGG | + | chr3_2:67155355-67155374 | Msa0419240:intron | 45.0% |
| ! | GCCAAGAGCATAGCATAACA+TGG | - | chr3_2:67155408-67155427 | None:intergenic | 45.0% |
| GTTCTGCTAATCTTTGTGGC+AGG | + | chr3_2:67155526-67155545 | Msa0419240:intron | 45.0% | |
| CAACGAGTGGCTGTGGATAT+CGG | - | chr3_2:67154017-67154036 | None:intergenic | 50.0% | |
| AAACATGATGAGGACGAGGG+AGG | - | chr3_2:67154096-67154115 | None:intergenic | 50.0% | |
| CCTCAAACATGATGAGGACG+AGG | - | chr3_2:67154100-67154119 | None:intergenic | 50.0% | |
| CCTCGTCCTCATCATGTTTG+AGG | + | chr3_2:67154097-67154116 | Msa0419240:exon | 50.0% | |
| TTAGAGAGAGTCTAGGCTGC+TGG | - | chr3_2:67154481-67154500 | None:intergenic | 50.0% | |
| GCAGCCTAGACTCTCTCTAA+TGG | + | chr3_2:67154481-67154500 | Msa0419240:CDS | 50.0% | |
| GTGCCCATTAGAGAGAGTCT+AGG | - | chr3_2:67154488-67154507 | None:intergenic | 50.0% | |
| ACAGAGGAGGATCTTCTCCA+TGG | + | chr3_2:67154693-67154712 | Msa0419240:CDS | 50.0% | |
| CAGAGGAGGATCTTCTCCAT+GGG | + | chr3_2:67154694-67154713 | Msa0419240:CDS | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | chr3_2:67154707-67154726 | Msa0419240:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | chr3_2:67155223-67155242 | Msa0419240:CDS | 50.0% | |
| GTTATGCAATGCTCTTGGCC+TGG | + | chr3_2:67155272-67155291 | Msa0419240:intron | 50.0% | |
| GTAACTGCTCCTCTATTCCC+AGG | - | chr3_2:67155293-67155312 | None:intergenic | 50.0% | |
| CAACGAGTGGCTGTGGATAT+CGG | - | chr3_2:67154017-67154036 | None:intergenic | 50.0% | |
| AAACATGATGAGGACGAGGG+AGG | - | chr3_2:67154096-67154115 | None:intergenic | 50.0% | |
| CCTCAAACATGATGAGGACG+AGG | - | chr3_2:67154100-67154119 | None:intergenic | 50.0% | |
| CCTCGTCCTCATCATGTTTG+AGG | + | chr3_2:67154097-67154116 | Msa0419240:exon | 50.0% | |
| TTAGAGAGAGTCTAGGCTGC+TGG | - | chr3_2:67154481-67154500 | None:intergenic | 50.0% | |
| GCAGCCTAGACTCTCTCTAA+TGG | + | chr3_2:67154481-67154500 | Msa0419240:CDS | 50.0% | |
| GTGCCCATTAGAGAGAGTCT+AGG | - | chr3_2:67154488-67154507 | None:intergenic | 50.0% | |
| ACAGAGGAGGATCTTCTCCA+TGG | + | chr3_2:67154693-67154712 | Msa0419240:CDS | 50.0% | |
| CAGAGGAGGATCTTCTCCAT+GGG | + | chr3_2:67154694-67154713 | Msa0419240:CDS | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | chr3_2:67154707-67154726 | Msa0419240:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | chr3_2:67155223-67155242 | Msa0419240:CDS | 50.0% | |
| GTTATGCAATGCTCTTGGCC+TGG | + | chr3_2:67155272-67155291 | Msa0419240:intron | 50.0% | |
| GTAACTGCTCCTCTATTCCC+AGG | - | chr3_2:67155293-67155312 | None:intergenic | 50.0% | |
| TTACCCATTTGCGACGGCAG+CGG | - | chr3_2:67154521-67154540 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | chr3_2:67154713-67154732 | None:intergenic | 55.0% |
| TGCTCTTGGCCTGGGAATAG+AGG | + | chr3_2:67155281-67155300 | Msa0419240:intron | 55.0% | |
| TTACCCATTTGCGACGGCAG+CGG | - | chr3_2:67154521-67154540 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | chr3_2:67154713-67154732 | None:intergenic | 55.0% |
| TGCTCTTGGCCTGGGAATAG+AGG | + | chr3_2:67155281-67155300 | Msa0419240:intron | 55.0% | |
| ACGCGATCAACGAGTGGCTG+TGG | - | chr3_2:67154024-67154043 | None:intergenic | 60.0% | |
| ACGCGATCAACGAGTGGCTG+TGG | - | chr3_2:67154024-67154043 | None:intergenic | 60.0% | |
| ATCGCCGCTGCCGTCGCAAA+TGG | + | chr3_2:67154514-67154533 | Msa0419240:CDS | 65.0% | |
| TCGCCGCTGCCGTCGCAAAT+GGG | + | chr3_2:67154515-67154534 | Msa0419240:CDS | 65.0% | |
| ATCGCCGCTGCCGTCGCAAA+TGG | + | chr3_2:67154514-67154533 | Msa0419240:CDS | 65.0% | |
| TCGCCGCTGCCGTCGCAAAT+GGG | + | chr3_2:67154515-67154534 | Msa0419240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 67153990 | 67155576 | 67153990 | ID=Msa0419240;Name=Msa0419240 |
| chr3_2 | mRNA | 67153990 | 67155576 | 67153990 | ID=Msa0419240-mRNA-1;Parent=Msa0419240;Name=Msa0419240-mRNA-1;_AED=0.26;_eAED=0.32;_QI=120|0.6|0.5|1|0.4|0.33|6|0|159 |
| chr3_2 | exon | 67153990 | 67154118 | 67153990 | ID=Msa0419240-mRNA-1:exon:15567;Parent=Msa0419240-mRNA-1 |
| chr3_2 | exon | 67154470 | 67154536 | 67154470 | ID=Msa0419240-mRNA-1:exon:15568;Parent=Msa0419240-mRNA-1 |
| chr3_2 | exon | 67154646 | 67154822 | 67154646 | ID=Msa0419240-mRNA-1:exon:15569;Parent=Msa0419240-mRNA-1 |
| chr3_2 | exon | 67154982 | 67155050 | 67154982 | ID=Msa0419240-mRNA-1:exon:15570;Parent=Msa0419240-mRNA-1 |
| chr3_2 | exon | 67155153 | 67155260 | 67155153 | ID=Msa0419240-mRNA-1:exon:15571;Parent=Msa0419240-mRNA-1 |
| chr3_2 | exon | 67155527 | 67155576 | 67155527 | ID=Msa0419240-mRNA-1:exon:15572;Parent=Msa0419240-mRNA-1 |
| chr3_2 | five_prime_UTR | 67153990 | 67154109 | 67153990 | ID=Msa0419240-mRNA-1:five_prime_utr;Parent=Msa0419240-mRNA-1 |
| chr3_2 | CDS | 67154110 | 67154118 | 67154110 | ID=Msa0419240-mRNA-1:cds;Parent=Msa0419240-mRNA-1 |
| chr3_2 | CDS | 67154470 | 67154536 | 67154470 | ID=Msa0419240-mRNA-1:cds;Parent=Msa0419240-mRNA-1 |
| chr3_2 | CDS | 67154646 | 67154822 | 67154646 | ID=Msa0419240-mRNA-1:cds;Parent=Msa0419240-mRNA-1 |
| chr3_2 | CDS | 67154982 | 67155050 | 67154982 | ID=Msa0419240-mRNA-1:cds;Parent=Msa0419240-mRNA-1 |
| chr3_2 | CDS | 67155153 | 67155260 | 67155153 | ID=Msa0419240-mRNA-1:cds;Parent=Msa0419240-mRNA-1 |
| chr3_2 | CDS | 67155527 | 67155576 | 67155527 | ID=Msa0419240-mRNA-1:cds;Parent=Msa0419240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
