Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093170 | A0A072U2J8 | 91.875 | 320 | 25 | 1 | 1 | 319 | 1 | 320 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0093170 | 0.802298 | 5.995601e-49 | -8.615850e-47 |
| Msa0093170 | Msa0743810 | 0.820753 | 5.807105e-53 | -8.615850e-47 |
| Msa0093170 | Msa1270230 | 0.807105 | 5.946269e-50 | -8.615850e-47 |
| Msa0093170 | Msa1287800 | 0.802217 | 6.230416e-49 | -8.615850e-47 |
| Msa0093170 | Msa1287810 | 0.800375 | 1.484261e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093170 | MtrunA17_Chr8g0365471 | 91.562 | 320 | 26 | 1 | 1 | 319 | 1 | 320 | 0.0 | 593 |
| Msa0093170 | MtrunA17_Chr8g0365541 | 91.562 | 320 | 26 | 1 | 1 | 319 | 1 | 320 | 0.0 | 593 |
| Msa0093170 | MtrunA17_Chr8g0365551 | 91.562 | 320 | 26 | 1 | 1 | 319 | 1 | 320 | 0.0 | 593 |
| Msa0093170 | MtrunA17_Chr8g0365461 | 91.250 | 320 | 27 | 1 | 1 | 319 | 1 | 320 | 0.0 | 592 |
| Msa0093170 | MtrunA17_Chr8g0365591 | 91.562 | 320 | 25 | 2 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| Msa0093170 | MtrunA17_Chr8g0365631 | 91.562 | 320 | 25 | 2 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| Msa0093170 | MtrunA17_Chr8g0365601 | 91.562 | 320 | 25 | 2 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| Msa0093170 | MtrunA17_Chr8g0365581 | 91.562 | 320 | 25 | 2 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| Msa0093170 | MtrunA17_Chr8g0365641 | 91.562 | 320 | 25 | 2 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| Msa0093170 | MtrunA17_Chr8g0365651 | 91.562 | 320 | 25 | 2 | 1 | 319 | 1 | 319 | 0.0 | 588 |
| Msa0093170 | MtrunA17_Chr8g0365561 | 91.148 | 305 | 26 | 1 | 1 | 304 | 1 | 305 | 0.0 | 562 |
| Msa0093170 | MtrunA17_Chr8g0365571 | 90.820 | 305 | 26 | 2 | 1 | 304 | 1 | 304 | 0.0 | 556 |
| Msa0093170 | MtrunA17_Chr8g0365451 | 86.875 | 320 | 26 | 2 | 1 | 319 | 1 | 305 | 0.0 | 554 |
| Msa0093170 | MtrunA17_Chr8g0365511 | 94.271 | 192 | 11 | 0 | 128 | 319 | 5 | 196 | 3.72e-129 | 366 |
| Msa0093170 | MtrunA17_Chr8g0365611 | 95.652 | 138 | 6 | 0 | 182 | 319 | 1 | 138 | 1.54e-90 | 266 |
| Msa0093170 | MtrunA17_Chr8g0365661 | 95.652 | 138 | 6 | 0 | 182 | 319 | 1 | 138 | 1.54e-90 | 266 |
| Msa0093170 | MtrunA17_Chr8g0365621 | 95.652 | 138 | 6 | 0 | 182 | 319 | 1 | 138 | 1.54e-90 | 266 |
| Msa0093170 | MtrunA17_Chr8g0365481 | 94.928 | 138 | 7 | 0 | 182 | 319 | 1 | 138 | 5.97e-90 | 265 |
| Msa0093170 | MtrunA17_Chr8g0365501 | 94.203 | 138 | 8 | 0 | 182 | 319 | 1 | 138 | 3.39e-89 | 263 |
| Msa0093170 | MtrunA17_Chr8g0365491 | 84.058 | 138 | 7 | 1 | 182 | 319 | 1 | 123 | 1.38e-74 | 225 |
| Msa0093170 | MtrunA17_Chr8g0365531 | 93.478 | 92 | 6 | 0 | 228 | 319 | 1 | 92 | 3.70e-54 | 172 |
| Msa0093170 | MtrunA17_Chr8g0365521 | 93.478 | 92 | 6 | 0 | 228 | 319 | 1 | 92 | 3.70e-54 | 172 |
| Msa0093170 | MtrunA17_Chr5g0413521 | 36.667 | 210 | 114 | 6 | 117 | 319 | 51 | 248 | 5.40e-26 | 103 |
| Msa0093170 | MtrunA17_Chr3g0117641 | 28.689 | 244 | 106 | 10 | 107 | 319 | 79 | 285 | 1.40e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0093170 | AT1G70420.1 | 37.445 | 227 | 119 | 8 | 106 | 319 | 56 | 272 | 8.40e-30 | 114 |
| Msa0093170 | AT1G23710.1 | 36.220 | 254 | 128 | 7 | 97 | 319 | 45 | 295 | 4.05e-29 | 113 |
Find 50 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTTTGGTTCTATAATA+TGG | 0.170177 | 1_2:+75913119 | None:intergenic |
| ATAAAACTAAAGAATCTTTA+TGG | 0.199825 | 1_2:+75912700 | None:intergenic |
| CCTTACAAACACCATTTATT+CGG | 0.242437 | 1_2:-75912516 | Msa0093170:CDS |
| GCCGATGAGATATTTGAAAA+TGG | 0.247110 | 1_2:-75913014 | Msa0093170:CDS |
| ATTGTCTTGAATTTGTTCTT+TGG | 0.254409 | 1_2:+75913106 | None:intergenic |
| TTGATAGAGCTTGCACTCTT+AGG | 0.265727 | 1_2:+75913375 | None:intergenic |
| TGGTAAATAGCCCGAATAAA+TGG | 0.339913 | 1_2:+75912505 | None:intergenic |
| TATGACAATGGTGGAGATAA+AGG | 0.356781 | 1_2:-75912814 | Msa0093170:CDS |
| TATATGCATTCCTTGGACTT+TGG | 0.377746 | 1_2:+75913040 | None:intergenic |
| CTTACAAACACCATTTATTC+GGG | 0.377972 | 1_2:-75912515 | Msa0093170:CDS |
| CTCGACAATTCAAACTCAAA+AGG | 0.398291 | 1_2:+75912452 | None:intergenic |
| TTAATAAAGATCTTCTTTAG+TGG | 0.411441 | 1_2:+75912906 | None:intergenic |
| CGGCAAATATATGCATTCCT+TGG | 0.422098 | 1_2:+75913033 | None:intergenic |
| GGATCAACTTTATCTTGAAC+GGG | 0.422439 | 1_2:+75913224 | None:intergenic |
| AAGCCAGAAAATTCAAGAAA+AGG | 0.425013 | 1_2:+75913335 | None:intergenic |
| GGGCTATTTACCAACATGAA+TGG | 0.427935 | 1_2:-75912495 | Msa0093170:CDS |
| CCGAATAAATGGTGTTTGTA+AGG | 0.435005 | 1_2:+75912516 | None:intergenic |
| TTCTCCAGCTGAAGATAAAG+TGG | 0.444042 | 1_2:-75913144 | Msa0093170:CDS |
| GGATCATCGTTGTCTGGAAT+GGG | 0.453847 | 1_2:+75913308 | None:intergenic |
| TGGATCATCGTTGTCTGGAA+TGG | 0.459544 | 1_2:+75913307 | None:intergenic |
| GATGAAGAAAATGTCGAAGA+AGG | 0.462147 | 1_2:-75913083 | Msa0093170:CDS |
| AGAATTGGATCATCGTTGTC+TGG | 0.463922 | 1_2:+75913302 | None:intergenic |
| TGGGATAGATGAATAGAGAT+TGG | 0.464472 | 1_2:+75912961 | None:intergenic |
| AGCCAGAAAATTCAAGAAAA+GGG | 0.464611 | 1_2:+75913336 | None:intergenic |
| TCGACAATTCAAACTCAAAA+GGG | 0.467420 | 1_2:+75912453 | None:intergenic |
| GGATCCACTTTATCTTCAGC+TGG | 0.468265 | 1_2:+75913140 | None:intergenic |
| ATGTGAGGCATTATTATTTG+AGG | 0.469085 | 1_2:+75912938 | None:intergenic |
| ATGAAGAAAATGTCGAAGAA+GGG | 0.489889 | 1_2:-75913082 | Msa0093170:CDS |
| TGGATCAACTTTATCTTGAA+CGG | 0.495454 | 1_2:+75913223 | None:intergenic |
| TTCAAACTCAAAAGGGGTGC+AGG | 0.506855 | 1_2:+75912460 | None:intergenic |
| TGAGGCATTATTATTTGAGG+TGG | 0.511992 | 1_2:+75912941 | None:intergenic |
| AGAGATTGGTCAAAAGTATG+TGG | 0.534293 | 1_2:+75912975 | None:intergenic |
| GTAAATCGACAATCAATGCT+AGG | 0.536000 | 1_2:-75912876 | Msa0093170:CDS |
| ATAAAGATCTTCTTTAGTGG+TGG | 0.545714 | 1_2:+75912909 | None:intergenic |
| GAGGCATTATTATTTGAGGT+GGG | 0.545937 | 1_2:+75912942 | None:intergenic |
| AGAAAATTCAAGAAAAGGGT+GGG | 0.554883 | 1_2:+75913340 | None:intergenic |
| CCACAGGGTCATCAAAATTG+TGG | 0.559393 | 1_2:-75912761 | Msa0093170:CDS |
| TTTGCGTGCACCAAAGTCCA+AGG | 0.575152 | 1_2:-75913050 | Msa0093170:CDS |
| CCTACTCAATCCATTCATGT+TGG | 0.577159 | 1_2:+75912485 | None:intergenic |
| CGTGTCTAATAAAACAAGGA+AGG | 0.583871 | 1_2:-75912565 | Msa0093170:CDS |
| CAGAAAATTCAAGAAAAGGG+TGG | 0.585089 | 1_2:+75913339 | None:intergenic |
| CCAACATGAATGGATTGAGT+AGG | 0.603551 | 1_2:-75912485 | Msa0093170:CDS |
| TGAAGAAAATGTCGAAGAAG+GGG | 0.608037 | 1_2:-75913081 | Msa0093170:CDS |
| GAAAATTCAAGAAAAGGGTG+GGG | 0.621737 | 1_2:+75913341 | None:intergenic |
| ATTGCAGAATATGACAATGG+TGG | 0.644760 | 1_2:-75912823 | Msa0093170:CDS |
| TAGTGGTGGTCGAAGATGTG+AGG | 0.649077 | 1_2:+75912923 | None:intergenic |
| CGACAATTCAAACTCAAAAG+GGG | 0.649278 | 1_2:+75912454 | None:intergenic |
| TGTACGTGTCTAATAAAACA+AGG | 0.678465 | 1_2:-75912569 | Msa0093170:CDS |
| AATCGACAATCAATGCTAGG+TGG | 0.707484 | 1_2:-75912873 | Msa0093170:CDS |
| GTCATTGCAGAATATGACAA+TGG | 0.707593 | 1_2:-75912826 | Msa0093170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTAAAGAATCTTTA+TGG | + | chr1_2:75913174-75913193 | None:intergenic | 15.0% |
| !! | ATAAAACTAAAGAATCTTTA+TGG | + | chr1_2:75913174-75913193 | None:intergenic | 15.0% |
| !! | TTAATAAAGATCTTCTTTAG+TGG | + | chr1_2:75912968-75912987 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTATTGAATGCTT+CGG | - | chr1_2:75913183-75913202 | Msa0093170:CDS | 20.0% |
| !! | AAAACATTGTCAATAAAAAG+AGG | - | chr1_2:75913236-75913255 | Msa0093170:CDS | 20.0% |
| !! | TTAATAAAGATCTTCTTTAG+TGG | + | chr1_2:75912968-75912987 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTATTGAATGCTT+CGG | - | chr1_2:75913183-75913202 | Msa0093170:CDS | 20.0% |
| !! | AAAACATTGTCAATAAAAAG+AGG | - | chr1_2:75913236-75913255 | Msa0093170:CDS | 20.0% |
| !!! | TGTTGTTTTGTACTACAAAA+TGG | + | chr1_2:75912671-75912690 | None:intergenic | 25.0% |
| !!! | TGTTCTTTGGTTCTATAATA+TGG | + | chr1_2:75912755-75912774 | None:intergenic | 25.0% |
| !! | ATTGTCTTGAATTTGTTCTT+TGG | + | chr1_2:75912768-75912787 | None:intergenic | 25.0% |
| !! | TCCATTTTCAAATATCTCAT+CGG | + | chr1_2:75912861-75912880 | None:intergenic | 25.0% |
| ! | AAAAAATTCCAAAAAGCCAA+AGG | - | chr1_2:75913210-75913229 | Msa0093170:CDS | 25.0% |
| ! | AAGGATGAAAAACACAAAAA+TGG | - | chr1_2:75913259-75913278 | Msa0093170:CDS | 25.0% |
| !!! | TGTTGTTTTGTACTACAAAA+TGG | + | chr1_2:75912671-75912690 | None:intergenic | 25.0% |
| !!! | TGTTCTTTGGTTCTATAATA+TGG | + | chr1_2:75912755-75912774 | None:intergenic | 25.0% |
| !! | ATTGTCTTGAATTTGTTCTT+TGG | + | chr1_2:75912768-75912787 | None:intergenic | 25.0% |
| !! | TCCATTTTCAAATATCTCAT+CGG | + | chr1_2:75912861-75912880 | None:intergenic | 25.0% |
| ! | AAAAAATTCCAAAAAGCCAA+AGG | - | chr1_2:75913210-75913229 | Msa0093170:CDS | 25.0% |
| ! | AAGGATGAAAAACACAAAAA+TGG | - | chr1_2:75913259-75913278 | Msa0093170:CDS | 25.0% |
| AGAAAATTCAAGAAAAGGGT+GGG | + | chr1_2:75912534-75912553 | None:intergenic | 30.0% | |
| AGCCAGAAAATTCAAGAAAA+GGG | + | chr1_2:75912538-75912557 | None:intergenic | 30.0% | |
| AAGCCAGAAAATTCAAGAAA+AGG | + | chr1_2:75912539-75912558 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTCTGCAAAGAAT+TGG | + | chr1_2:75912587-75912606 | None:intergenic | 30.0% |
| TGGATCAACTTTATCTTGAA+CGG | + | chr1_2:75912651-75912670 | None:intergenic | 30.0% | |
| ! | GATGCTTTTCTTGATTTTGA+TGG | - | chr1_2:75912701-75912720 | Msa0093170:CDS | 30.0% |
| ATGAAGAAAATGTCGAAGAA+GGG | - | chr1_2:75912789-75912808 | Msa0093170:CDS | 30.0% | |
| ! | ATGTGAGGCATTATTATTTG+AGG | + | chr1_2:75912936-75912955 | None:intergenic | 30.0% |
| ATAAAGATCTTCTTTAGTGG+TGG | + | chr1_2:75912965-75912984 | None:intergenic | 30.0% | |
| ! | TTGACAATGTTTTCTACCTT+TGG | + | chr1_2:75913229-75913248 | None:intergenic | 30.0% |
| CATTGTCAATAAAAAGAGGA+AGG | - | chr1_2:75913240-75913259 | Msa0093170:CDS | 30.0% | |
| TGTACGTGTCTAATAAAACA+AGG | - | chr1_2:75913302-75913321 | Msa0093170:CDS | 30.0% | |
| CCTTACAAACACCATTTATT+CGG | - | chr1_2:75913355-75913374 | Msa0093170:CDS | 30.0% | |
| CTTACAAACACCATTTATTC+GGG | - | chr1_2:75913356-75913375 | Msa0093170:CDS | 30.0% | |
| AGAAAATTCAAGAAAAGGGT+GGG | + | chr1_2:75912534-75912553 | None:intergenic | 30.0% | |
| AGCCAGAAAATTCAAGAAAA+GGG | + | chr1_2:75912538-75912557 | None:intergenic | 30.0% | |
| AAGCCAGAAAATTCAAGAAA+AGG | + | chr1_2:75912539-75912558 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTCTGCAAAGAAT+TGG | + | chr1_2:75912587-75912606 | None:intergenic | 30.0% |
| TGGATCAACTTTATCTTGAA+CGG | + | chr1_2:75912651-75912670 | None:intergenic | 30.0% | |
| ! | GATGCTTTTCTTGATTTTGA+TGG | - | chr1_2:75912701-75912720 | Msa0093170:CDS | 30.0% |
| ATGAAGAAAATGTCGAAGAA+GGG | - | chr1_2:75912789-75912808 | Msa0093170:CDS | 30.0% | |
| ! | ATGTGAGGCATTATTATTTG+AGG | + | chr1_2:75912936-75912955 | None:intergenic | 30.0% |
| ATAAAGATCTTCTTTAGTGG+TGG | + | chr1_2:75912965-75912984 | None:intergenic | 30.0% | |
| ! | TTGACAATGTTTTCTACCTT+TGG | + | chr1_2:75913229-75913248 | None:intergenic | 30.0% |
| CATTGTCAATAAAAAGAGGA+AGG | - | chr1_2:75913240-75913259 | Msa0093170:CDS | 30.0% | |
| TGTACGTGTCTAATAAAACA+AGG | - | chr1_2:75913302-75913321 | Msa0093170:CDS | 30.0% | |
| CCTTACAAACACCATTTATT+CGG | - | chr1_2:75913355-75913374 | Msa0093170:CDS | 30.0% | |
| CTTACAAACACCATTTATTC+GGG | - | chr1_2:75913356-75913375 | Msa0093170:CDS | 30.0% | |
| GAAAATTCAAGAAAAGGGTG+GGG | + | chr1_2:75912533-75912552 | None:intergenic | 35.0% | |
| CAGAAAATTCAAGAAAAGGG+TGG | + | chr1_2:75912535-75912554 | None:intergenic | 35.0% | |
| ! | CACCCTTTTCTTGAATTTTC+TGG | - | chr1_2:75912533-75912552 | Msa0093170:CDS | 35.0% |
| !!! | GACGCTCTTTTTGATTTTGA+TGG | - | chr1_2:75912617-75912636 | Msa0093170:CDS | 35.0% |
| GGATCAACTTTATCTTGAAC+GGG | + | chr1_2:75912650-75912669 | None:intergenic | 35.0% | |
| GATGAAGAAAATGTCGAAGA+AGG | - | chr1_2:75912788-75912807 | Msa0093170:CDS | 35.0% | |
| TGAAGAAAATGTCGAAGAAG+GGG | - | chr1_2:75912790-75912809 | Msa0093170:CDS | 35.0% | |
| TATATGCATTCCTTGGACTT+TGG | + | chr1_2:75912834-75912853 | None:intergenic | 35.0% | |
| GCCGATGAGATATTTGAAAA+TGG | - | chr1_2:75912857-75912876 | Msa0093170:CDS | 35.0% | |
| ! | AGAGATTGGTCAAAAGTATG+TGG | + | chr1_2:75912899-75912918 | None:intergenic | 35.0% |
| TGGGATAGATGAATAGAGAT+TGG | + | chr1_2:75912913-75912932 | None:intergenic | 35.0% | |
| ! | GAGGCATTATTATTTGAGGT+GGG | + | chr1_2:75912932-75912951 | None:intergenic | 35.0% |
| ! | TGAGGCATTATTATTTGAGG+TGG | + | chr1_2:75912933-75912952 | None:intergenic | 35.0% |
| GTAAATCGACAATCAATGCT+AGG | - | chr1_2:75912995-75913014 | Msa0093170:CDS | 35.0% | |
| GTCATTGCAGAATATGACAA+TGG | - | chr1_2:75913045-75913064 | Msa0093170:CDS | 35.0% | |
| ATTGCAGAATATGACAATGG+TGG | - | chr1_2:75913048-75913067 | Msa0093170:CDS | 35.0% | |
| ! | TATGACAATGGTGGAGATAA+AGG | - | chr1_2:75913057-75913076 | Msa0093170:CDS | 35.0% |
| TATGAAAAAAGCAACTCCAC+AGG | - | chr1_2:75913094-75913113 | Msa0093170:CDS | 35.0% | |
| ATGAAAAAAGCAACTCCACA+GGG | - | chr1_2:75913095-75913114 | Msa0093170:CDS | 35.0% | |
| !!! | GTTTTCTACCTTTGGCTTTT+TGG | + | chr1_2:75913221-75913240 | None:intergenic | 35.0% |
| CGTGTCTAATAAAACAAGGA+AGG | - | chr1_2:75913306-75913325 | Msa0093170:CDS | 35.0% | |
| CCGAATAAATGGTGTTTGTA+AGG | + | chr1_2:75913358-75913377 | None:intergenic | 35.0% | |
| TGGTAAATAGCCCGAATAAA+TGG | + | chr1_2:75913369-75913388 | None:intergenic | 35.0% | |
| GAAAATTCAAGAAAAGGGTG+GGG | + | chr1_2:75912533-75912552 | None:intergenic | 35.0% | |
| CAGAAAATTCAAGAAAAGGG+TGG | + | chr1_2:75912535-75912554 | None:intergenic | 35.0% | |
| ! | CACCCTTTTCTTGAATTTTC+TGG | - | chr1_2:75912533-75912552 | Msa0093170:CDS | 35.0% |
| !!! | GACGCTCTTTTTGATTTTGA+TGG | - | chr1_2:75912617-75912636 | Msa0093170:CDS | 35.0% |
| GGATCAACTTTATCTTGAAC+GGG | + | chr1_2:75912650-75912669 | None:intergenic | 35.0% | |
| GATGAAGAAAATGTCGAAGA+AGG | - | chr1_2:75912788-75912807 | Msa0093170:CDS | 35.0% | |
| TGAAGAAAATGTCGAAGAAG+GGG | - | chr1_2:75912790-75912809 | Msa0093170:CDS | 35.0% | |
| TATATGCATTCCTTGGACTT+TGG | + | chr1_2:75912834-75912853 | None:intergenic | 35.0% | |
| GCCGATGAGATATTTGAAAA+TGG | - | chr1_2:75912857-75912876 | Msa0093170:CDS | 35.0% | |
| ! | AGAGATTGGTCAAAAGTATG+TGG | + | chr1_2:75912899-75912918 | None:intergenic | 35.0% |
| TGGGATAGATGAATAGAGAT+TGG | + | chr1_2:75912913-75912932 | None:intergenic | 35.0% | |
| ! | GAGGCATTATTATTTGAGGT+GGG | + | chr1_2:75912932-75912951 | None:intergenic | 35.0% |
| ! | TGAGGCATTATTATTTGAGG+TGG | + | chr1_2:75912933-75912952 | None:intergenic | 35.0% |
| GTAAATCGACAATCAATGCT+AGG | - | chr1_2:75912995-75913014 | Msa0093170:CDS | 35.0% | |
| GTCATTGCAGAATATGACAA+TGG | - | chr1_2:75913045-75913064 | Msa0093170:CDS | 35.0% | |
| ATTGCAGAATATGACAATGG+TGG | - | chr1_2:75913048-75913067 | Msa0093170:CDS | 35.0% | |
| ! | TATGACAATGGTGGAGATAA+AGG | - | chr1_2:75913057-75913076 | Msa0093170:CDS | 35.0% |
| TATGAAAAAAGCAACTCCAC+AGG | - | chr1_2:75913094-75913113 | Msa0093170:CDS | 35.0% | |
| ATGAAAAAAGCAACTCCACA+GGG | - | chr1_2:75913095-75913114 | Msa0093170:CDS | 35.0% | |
| !!! | GTTTTCTACCTTTGGCTTTT+TGG | + | chr1_2:75913221-75913240 | None:intergenic | 35.0% |
| CGTGTCTAATAAAACAAGGA+AGG | - | chr1_2:75913306-75913325 | Msa0093170:CDS | 35.0% | |
| CCGAATAAATGGTGTTTGTA+AGG | + | chr1_2:75913358-75913377 | None:intergenic | 35.0% | |
| TGGTAAATAGCCCGAATAAA+TGG | + | chr1_2:75913369-75913388 | None:intergenic | 35.0% | |
| TTGATAGAGCTTGCACTCTT+AGG | + | chr1_2:75912499-75912518 | None:intergenic | 40.0% | |
| AGAATTGGATCATCGTTGTC+TGG | + | chr1_2:75912572-75912591 | None:intergenic | 40.0% | |
| TTCTCCAGCTGAAGATAAAG+TGG | - | chr1_2:75912727-75912746 | Msa0093170:CDS | 40.0% | |
| CGGCAAATATATGCATTCCT+TGG | + | chr1_2:75912841-75912860 | None:intergenic | 40.0% | |
| AATCGACAATCAATGCTAGG+TGG | - | chr1_2:75912998-75913017 | Msa0093170:CDS | 40.0% | |
| GGGCTATTTACCAACATGAA+TGG | - | chr1_2:75913376-75913395 | Msa0093170:CDS | 40.0% | |
| CCTACTCAATCCATTCATGT+TGG | + | chr1_2:75913389-75913408 | None:intergenic | 40.0% | |
| !! | CCAACATGAATGGATTGAGT+AGG | - | chr1_2:75913386-75913405 | Msa0093170:CDS | 40.0% |
| TTGATAGAGCTTGCACTCTT+AGG | + | chr1_2:75912499-75912518 | None:intergenic | 40.0% | |
| AGAATTGGATCATCGTTGTC+TGG | + | chr1_2:75912572-75912591 | None:intergenic | 40.0% | |
| TTCTCCAGCTGAAGATAAAG+TGG | - | chr1_2:75912727-75912746 | Msa0093170:CDS | 40.0% | |
| CGGCAAATATATGCATTCCT+TGG | + | chr1_2:75912841-75912860 | None:intergenic | 40.0% | |
| AATCGACAATCAATGCTAGG+TGG | - | chr1_2:75912998-75913017 | Msa0093170:CDS | 40.0% | |
| GGGCTATTTACCAACATGAA+TGG | - | chr1_2:75913376-75913395 | Msa0093170:CDS | 40.0% | |
| CCTACTCAATCCATTCATGT+TGG | + | chr1_2:75913389-75913408 | None:intergenic | 40.0% | |
| !! | CCAACATGAATGGATTGAGT+AGG | - | chr1_2:75913386-75913405 | Msa0093170:CDS | 40.0% |
| ! | GGATCATCGTTGTCTGGAAT+GGG | + | chr1_2:75912566-75912585 | None:intergenic | 45.0% |
| TGGATCATCGTTGTCTGGAA+TGG | + | chr1_2:75912567-75912586 | None:intergenic | 45.0% | |
| GGATCCACTTTATCTTCAGC+TGG | + | chr1_2:75912734-75912753 | None:intergenic | 45.0% | |
| !! | CCACAATTTTGATGACCCTG+TGG | + | chr1_2:75913113-75913132 | None:intergenic | 45.0% |
| CCACAGGGTCATCAAAATTG+TGG | - | chr1_2:75913110-75913129 | Msa0093170:CDS | 45.0% | |
| ! | GGATCATCGTTGTCTGGAAT+GGG | + | chr1_2:75912566-75912585 | None:intergenic | 45.0% |
| TGGATCATCGTTGTCTGGAA+TGG | + | chr1_2:75912567-75912586 | None:intergenic | 45.0% | |
| GGATCCACTTTATCTTCAGC+TGG | + | chr1_2:75912734-75912753 | None:intergenic | 45.0% | |
| !! | CCACAATTTTGATGACCCTG+TGG | + | chr1_2:75913113-75913132 | None:intergenic | 45.0% |
| CCACAGGGTCATCAAAATTG+TGG | - | chr1_2:75913110-75913129 | Msa0093170:CDS | 45.0% | |
| TTTGCGTGCACCAAAGTCCA+AGG | - | chr1_2:75912821-75912840 | Msa0093170:CDS | 50.0% | |
| TAGTGGTGGTCGAAGATGTG+AGG | + | chr1_2:75912951-75912970 | None:intergenic | 50.0% | |
| TTTGCGTGCACCAAAGTCCA+AGG | - | chr1_2:75912821-75912840 | Msa0093170:CDS | 50.0% | |
| TAGTGGTGGTCGAAGATGTG+AGG | + | chr1_2:75912951-75912970 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 75912467 | 75913426 | 75912467 | ID=Msa0093170;Name=Msa0093170 |
| chr1_2 | mRNA | 75912467 | 75913426 | 75912467 | ID=Msa0093170-mRNA-1;Parent=Msa0093170;Name=Msa0093170-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|319 |
| chr1_2 | exon | 75912467 | 75913426 | 75912467 | ID=Msa0093170-mRNA-1:exon:26749;Parent=Msa0093170-mRNA-1 |
| chr1_2 | CDS | 75912467 | 75913426 | 75912467 | ID=Msa0093170-mRNA-1:cds;Parent=Msa0093170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
