AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1287810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1287810 MtrunA17_Chr2g0289121 65.769 260 26 3 1 203 357 610 1.79e-104 318
Msa1287810 MtrunA17_Chr8g0361381 61.905 210 21 3 49 201 1 208 1.97e-80 239
Msa1287810 MtrunA17_Chr2g0289031 80.800 125 17 1 86 203 70 194 2.82e-69 216
Msa1287810 MtrunA17_Chr2g0289091 86.792 106 14 0 98 203 28 133 6.93e-62 198
Msa1287810 MtrunA17_Chr4g0075261 64.234 137 42 1 74 203 484 620 1.53e-56 191
Msa1287810 MtrunA17_Chr1g0211711 60.000 125 43 1 86 203 706 830 1.20e-43 155
Msa1287810 MtrunA17_Chr1g0147021 59.542 131 45 2 80 203 1203 1332 1.49e-43 155
Msa1287810 MtrunA17_Chr1g0183311 59.200 125 44 1 86 203 511 635 1.47e-42 152
Msa1287810 MtrunA17_Chr1g0211691 58.400 125 45 1 86 203 711 835 6.44e-42 150
Msa1287810 MtrunA17_Chr7g0275771 53.435 131 54 1 80 203 508 638 5.31e-41 147
Msa1287810 MtrunA17_Chr5g0426961 56.800 125 47 1 86 203 507 631 3.29e-40 145
Msa1287810 MtrunA17_Chr1g0211661 55.200 125 49 1 86 203 591 715 2.14e-39 143
Msa1287810 MtrunA17_Chr5g0420361 55.072 138 47 5 77 203 429 562 1.03e-36 135
Msa1287810 MtrunA17_Chr5g0448301 49.600 125 53 2 88 203 388 511 5.31e-34 127
Msa1287810 MtrunA17_Chr7g0231061 52.830 106 50 0 98 203 30 135 2.58e-33 118
Msa1287810 MtrunA17_Chr6g0472441 50.000 124 58 2 77 200 376 495 1.95e-31 120
Msa1287810 MtrunA17_Chr2g0289101 81.538 65 12 0 1 65 81 145 3.96e-31 111
Msa1287810 MtrunA17_Chr1g0192011 48.092 131 61 1 80 203 588 718 7.79e-30 115
Msa1287810 MtrunA17_Chr8g0340381 59.770 87 31 2 114 200 36 118 3.98e-28 104
Msa1287810 MtrunA17_Chr4g0048531 42.056 107 60 1 97 203 888 992 1.30e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1287810 AT1G11950.2 69.118 136 35 1 75 203 532 667 2.21e-59 199
Msa1287810 AT1G11950.1 69.118 136 35 1 75 203 532 667 2.78e-59 199
Msa1287810 AT1G11950.3 69.118 136 35 1 75 203 532 667 2.78e-59 199
Msa1287810 AT1G62310.1 66.667 141 37 2 70 203 548 685 1.71e-57 194
Msa1287810 AT4G00990.1 55.634 142 56 1 69 203 414 555 5.67e-45 159
Msa1287810 AT4G00990.2 55.634 142 56 1 69 203 414 555 6.73e-45 159
Msa1287810 AT4G00990.3 55.634 142 56 1 69 203 414 555 6.75e-45 159
Msa1287810 AT3G07610.1 49.296 142 62 2 69 203 550 688 3.12e-36 134
Msa1287810 AT3G07610.2 50.000 140 60 2 69 201 550 686 1.03e-35 133
Msa1287810 AT3G07610.3 49.640 139 60 2 69 200 550 685 2.13e-35 132
Msa1287810 AT1G09060.2 42.742 124 64 1 87 203 537 660 6.37e-22 93.6
Msa1287810 AT1G09060.1 42.742 124 64 1 87 203 537 660 6.37e-22 93.6
Msa1287810 AT1G09060.4 42.742 124 64 1 87 203 551 674 6.63e-22 93.6
Msa1287810 AT1G09060.3 42.742 124 64 1 87 203 551 674 6.63e-22 93.6
Msa1287810 AT4G21430.1 32.593 135 81 2 77 201 540 674 3.03e-14 71.2

Find 43 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGGAGGATATCTAAAT+TGG 0.230202 8_3:-39415885 Msa1287810:CDS
CCACAACCACCTAGTTCTTT+TGG 0.232816 8_3:+39415941 None:intergenic
GAAGAAGATATATAAATTTC+TGG 0.245625 8_3:-39414913 Msa1287810:CDS
TGTAAAGGCTATTGATTGTT+TGG 0.292387 8_3:-39415593 Msa1287810:CDS
TCCTCCGCCAAGCTCTTCTT+TGG 0.300657 8_3:+39414688 None:intergenic
GAGCTTGGCGGAGGAGATTC+TGG 0.313047 8_3:-39414680 Msa1287810:CDS
ATCACTATTCACATTCCATT+TGG 0.366620 8_3:+39415982 None:intergenic
TACAAAACTCCATTGTGATA+TGG 0.386545 8_3:-39414657 Msa1287810:CDS
GACACTCGCCAGTTCTTTGA+AGG 0.395120 8_3:-39414947 Msa1287810:intron
CTGAAACGCATCCTTCCAAT+TGG 0.403918 8_3:-39415902 Msa1287810:CDS
AATTTAGATATCCTCCCAAT+TGG 0.438740 8_3:+39415887 None:intergenic
GGATCACTATACTCTTGAAA+TGG 0.474382 8_3:+39414800 None:intergenic
GAGTATAGTGATCCTCGATC+TGG 0.478549 8_3:-39414791 Msa1287810:CDS
AGAGGGTCATGTTGACCAAA+TGG 0.479022 8_3:-39415997 None:intergenic
GTTCTTTGAAGGTTATAAAG+AGG 0.497551 8_3:-39414936 Msa1287810:CDS
TGGTTGTGGTGGCTGTGTGA+TGG 0.522574 8_3:-39415927 Msa1287810:CDS
TGAGGTCACTTGACATTGGA+TGG 0.536039 8_3:+39415759 None:intergenic
AGATGATAACTCAAATGTAA+AGG 0.540070 8_3:-39415608 Msa1287810:CDS
ACCAAAGAAGAGCTTGGCGG+AGG 0.542386 8_3:-39414689 Msa1287810:CDS
CATGTCATAAAGCCTGACTT+AGG 0.552096 8_3:-39414737 Msa1287810:CDS
TTCTTTGAAGGTTATAAAGA+GGG 0.554859 8_3:-39414935 Msa1287810:CDS
CCAAAAGAACTAGGTGGTTG+TGG 0.561255 8_3:-39415941 Msa1287810:CDS
TGAAACGCATCCTTCCAATT+GGG 0.562137 8_3:-39415901 Msa1287810:CDS
AAGATATATAAATTTCTGGC+CGG 0.566135 8_3:-39414909 Msa1287810:CDS
TCTATGAGGTCACTTGACAT+TGG 0.566511 8_3:+39415755 None:intergenic
TAGATATCCTCCCAATTGGA+AGG 0.569060 8_3:+39415891 None:intergenic
AGATGCTCAAGCTAAAAGAC+TGG 0.578780 8_3:-39414886 Msa1287810:CDS
TATGGAACCAAAGAAGAGCT+TGG 0.585851 8_3:-39414695 Msa1287810:CDS
GTGGTGGCAACTTTGCAGCA+AGG 0.598809 8_3:+39414759 None:intergenic
AACGGATAAACTCGTCACAA+AGG 0.603909 8_3:+39414828 None:intergenic
TGATTGTTTGGCTAGTTGTG+AGG 0.604417 8_3:-39415581 Msa1287810:intron
GGAACCAAAGAAGAGCTTGG+CGG 0.614905 8_3:-39414692 Msa1287810:CDS
TCAGGCTTTATGACATGTGG+TGG 0.618540 8_3:+39414743 None:intergenic
GAATGTGCTCCAAAAGAACT+AGG 0.632610 8_3:-39415950 Msa1287810:CDS
AGGTTTAGAATTCCAGATCG+AGG 0.639738 8_3:+39414779 None:intergenic
AAGTCAGGCTTTATGACATG+TGG 0.640339 8_3:+39414740 None:intergenic
ACTCTTGAAATGGCAAACAA+CGG 0.651117 8_3:+39414810 None:intergenic
AACGCATCCTTCCAATTGGG+AGG 0.652477 8_3:-39415898 Msa1287810:CDS
CCATTGTGATATGGCAGACG+CGG 0.656520 8_3:-39414648 Msa1287810:intron
CCGCGTCTGCCATATCACAA+TGG 0.685598 8_3:+39414648 None:intergenic
AAAGAACTAGGTGGTTGTGG+TGG 0.707130 8_3:-39415938 Msa1287810:CDS
ATAAACTCGTCACAAAGGCG+CGG 0.715118 8_3:+39414833 None:intergenic
TGTGCTCCAAAAGAACTAGG+TGG 0.792037 8_3:-39415947 Msa1287810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTCCAAAAATAC+TGG - chr8_3:39414780-39414799 Msa1287810:CDS 15.0%
!! TGATCAAATAATCTAATAAT+AGG - chr8_3:39415050-39415069 Msa1287810:intron 15.0%
!! CTAAAATATTAATAATGAGT+TGG + chr8_3:39415446-39415465 None:intergenic 15.0%
!!! TAAGTTTAATTTATTGTTCA+AGG - chr8_3:39415942-39415961 Msa1287810:CDS 15.0%
!! TATTTAAATTCCAAAAATAC+TGG - chr8_3:39414780-39414799 Msa1287810:CDS 15.0%
!! TGATCAAATAATCTAATAAT+AGG - chr8_3:39415050-39415069 Msa1287810:intron 15.0%
!! CTAAAATATTAATAATGAGT+TGG + chr8_3:39415446-39415465 None:intergenic 15.0%
!!! TAAGTTTAATTTATTGTTCA+AGG - chr8_3:39415942-39415961 Msa1287810:CDS 15.0%
!!! AAATAGCTTTTTTTTCTATG+AGG + chr8_3:39414765-39414784 None:intergenic 20.0%
!! TCAAATAATCTAATAATAGG+AGG - chr8_3:39415053-39415072 Msa1287810:intron 20.0%
!! ATATAAAAATCGCAAAAGAT+TGG - chr8_3:39415298-39415317 Msa1287810:intron 20.0%
!! GAAGAAGATATATAAATTTC+TGG - chr8_3:39415590-39415609 Msa1287810:CDS 20.0%
!!! AAATAGCTTTTTTTTCTATG+AGG + chr8_3:39414765-39414784 None:intergenic 20.0%
!! TCAAATAATCTAATAATAGG+AGG - chr8_3:39415053-39415072 Msa1287810:intron 20.0%
!! ATATAAAAATCGCAAAAGAT+TGG - chr8_3:39415298-39415317 Msa1287810:intron 20.0%
!! GAAGAAGATATATAAATTTC+TGG - chr8_3:39415590-39415609 Msa1287810:CDS 20.0%
! TGCAAAAATGTTTCTTCAAA+TGG + chr8_3:39414657-39414676 None:intergenic 25.0%
! AGATGATAACTCAAATGTAA+AGG - chr8_3:39414895-39414914 Msa1287810:CDS 25.0%
! TAGTTGAATTTGAATTGTCT+AGG - chr8_3:39415009-39415028 Msa1287810:intron 25.0%
! TTCCAACTACATATTTGTTT+AGG + chr8_3:39415079-39415098 None:intergenic 25.0%
! TAAACAAATATGTAGTTGGA+AGG - chr8_3:39415078-39415097 Msa1287810:intron 25.0%
!! AAAAAACATCAATTTTGTGC+TGG + chr8_3:39415162-39415181 None:intergenic 25.0%
! TCCCTTAAAGAAAATATGTT+CGG - chr8_3:39415231-39415250 Msa1287810:intron 25.0%
!! TCCGAACATATTTTCTTTAA+GGG + chr8_3:39415235-39415254 None:intergenic 25.0%
!! ATCCGAACATATTTTCTTTA+AGG + chr8_3:39415236-39415255 None:intergenic 25.0%
! TTTCATAGTTACATTTCCTT+TGG - chr8_3:39415376-39415395 Msa1287810:intron 25.0%
!! TTACACTTTAGAAAAACATG+TGG - chr8_3:39415411-39415430 Msa1287810:intron 25.0%
! TTACATAGGGAGATAAATAT+TGG + chr8_3:39415517-39415536 None:intergenic 25.0%
!! TTCTTTGAAGGTTATAAAGA+GGG - chr8_3:39415568-39415587 Msa1287810:intron 25.0%
!!! AAGATATATAAATTTCTGGC+CGG - chr8_3:39415594-39415613 Msa1287810:CDS 25.0%
!! ACATTTTCAAACTCATCATA+AGG + chr8_3:39415646-39415665 None:intergenic 25.0%
!!! TATTTTGACTCATATAACTC+AGG - chr8_3:39415969-39415988 Msa1287810:CDS 25.0%
! TGCAAAAATGTTTCTTCAAA+TGG + chr8_3:39414657-39414676 None:intergenic 25.0%
! AGATGATAACTCAAATGTAA+AGG - chr8_3:39414895-39414914 Msa1287810:CDS 25.0%
! TAGTTGAATTTGAATTGTCT+AGG - chr8_3:39415009-39415028 Msa1287810:intron 25.0%
! TTCCAACTACATATTTGTTT+AGG + chr8_3:39415079-39415098 None:intergenic 25.0%
! TAAACAAATATGTAGTTGGA+AGG - chr8_3:39415078-39415097 Msa1287810:intron 25.0%
!! AAAAAACATCAATTTTGTGC+TGG + chr8_3:39415162-39415181 None:intergenic 25.0%
! TCCCTTAAAGAAAATATGTT+CGG - chr8_3:39415231-39415250 Msa1287810:intron 25.0%
!! TCCGAACATATTTTCTTTAA+GGG + chr8_3:39415235-39415254 None:intergenic 25.0%
!! ATCCGAACATATTTTCTTTA+AGG + chr8_3:39415236-39415255 None:intergenic 25.0%
! TTTCATAGTTACATTTCCTT+TGG - chr8_3:39415376-39415395 Msa1287810:intron 25.0%
!! TTACACTTTAGAAAAACATG+TGG - chr8_3:39415411-39415430 Msa1287810:intron 25.0%
! TTACATAGGGAGATAAATAT+TGG + chr8_3:39415517-39415536 None:intergenic 25.0%
!! TTCTTTGAAGGTTATAAAGA+GGG - chr8_3:39415568-39415587 Msa1287810:intron 25.0%
!!! AAGATATATAAATTTCTGGC+CGG - chr8_3:39415594-39415613 Msa1287810:CDS 25.0%
!! ACATTTTCAAACTCATCATA+AGG + chr8_3:39415646-39415665 None:intergenic 25.0%
!!! TATTTTGACTCATATAACTC+AGG - chr8_3:39415969-39415988 Msa1287810:CDS 25.0%
ATCACTATTCACATTCCATT+TGG + chr8_3:39414524-39414543 None:intergenic 30.0%
AATTTAGATATCCTCCCAAT+TGG + chr8_3:39414619-39414638 None:intergenic 30.0%
AATTGGGAGGATATCTAAAT+TGG - chr8_3:39414618-39414637 Msa1287810:intron 30.0%
TTCCAAAAATACTGGAGAAA+CGG - chr8_3:39414788-39414807 Msa1287810:CDS 30.0%
AGAACGTAAGATATTAGAAC+GGG + chr8_3:39414818-39414837 None:intergenic 30.0%
GAGAACGTAAGATATTAGAA+CGG + chr8_3:39414819-39414838 None:intergenic 30.0%
ATATCTTACGTTCTCAAACA+AGG - chr8_3:39414824-39414843 Msa1287810:CDS 30.0%
TATCTTACGTTCTCAAACAA+GGG - chr8_3:39414825-39414844 Msa1287810:CDS 30.0%
! TGTAAAGGCTATTGATTGTT+TGG - chr8_3:39414910-39414929 Msa1287810:CDS 30.0%
!!! TGTGTGATTTTTTAGAAACG+CGG + chr8_3:39415117-39415136 None:intergenic 30.0%
TACTTGCAAAGGTTTACATA+GGG + chr8_3:39415530-39415549 None:intergenic 30.0%
TTACTTGCAAAGGTTTACAT+AGG + chr8_3:39415531-39415550 None:intergenic 30.0%
CTTTATAACCTTCAAAGAAC+TGG + chr8_3:39415567-39415586 None:intergenic 30.0%
! GTTCTTTGAAGGTTATAAAG+AGG - chr8_3:39415567-39415586 Msa1287810:intron 30.0%
! TTTTCAAACTCATCATAAGG+TGG + chr8_3:39415643-39415662 None:intergenic 30.0%
TACAAAACTCCATTGTGATA+TGG - chr8_3:39415846-39415865 Msa1287810:CDS 30.0%
ATGTACTTTCAACGCTATAT+TGG - chr8_3:39415897-39415916 Msa1287810:CDS 30.0%
ATCACTATTCACATTCCATT+TGG + chr8_3:39414524-39414543 None:intergenic 30.0%
AATTTAGATATCCTCCCAAT+TGG + chr8_3:39414619-39414638 None:intergenic 30.0%
AATTGGGAGGATATCTAAAT+TGG - chr8_3:39414618-39414637 Msa1287810:intron 30.0%
TTCCAAAAATACTGGAGAAA+CGG - chr8_3:39414788-39414807 Msa1287810:CDS 30.0%
AGAACGTAAGATATTAGAAC+GGG + chr8_3:39414818-39414837 None:intergenic 30.0%
GAGAACGTAAGATATTAGAA+CGG + chr8_3:39414819-39414838 None:intergenic 30.0%
ATATCTTACGTTCTCAAACA+AGG - chr8_3:39414824-39414843 Msa1287810:CDS 30.0%
TATCTTACGTTCTCAAACAA+GGG - chr8_3:39414825-39414844 Msa1287810:CDS 30.0%
! TGTAAAGGCTATTGATTGTT+TGG - chr8_3:39414910-39414929 Msa1287810:CDS 30.0%
!!! TGTGTGATTTTTTAGAAACG+CGG + chr8_3:39415117-39415136 None:intergenic 30.0%
TACTTGCAAAGGTTTACATA+GGG + chr8_3:39415530-39415549 None:intergenic 30.0%
TTACTTGCAAAGGTTTACAT+AGG + chr8_3:39415531-39415550 None:intergenic 30.0%
CTTTATAACCTTCAAAGAAC+TGG + chr8_3:39415567-39415586 None:intergenic 30.0%
! GTTCTTTGAAGGTTATAAAG+AGG - chr8_3:39415567-39415586 Msa1287810:intron 30.0%
! TTTTCAAACTCATCATAAGG+TGG + chr8_3:39415643-39415662 None:intergenic 30.0%
TACAAAACTCCATTGTGATA+TGG - chr8_3:39415846-39415865 Msa1287810:CDS 30.0%
ATGTACTTTCAACGCTATAT+TGG - chr8_3:39415897-39415916 Msa1287810:CDS 30.0%
! TCTAGGTCTAAAGCGTATAA+AGG - chr8_3:39415026-39415045 Msa1287810:intron 35.0%
GGCCTAAACAAATATGTAGT+TGG - chr8_3:39415074-39415093 Msa1287810:intron 35.0%
ATTACACCTCACCAAAGATA+CGG + chr8_3:39415210-39415229 None:intergenic 35.0%
!! CTTTCAACATTGGTGCTTTT+AGG - chr8_3:39415275-39415294 Msa1287810:intron 35.0%
TGACAGCATATGTCACATTT+GGG + chr8_3:39415327-39415346 None:intergenic 35.0%
TTGACAGCATATGTCACATT+TGG + chr8_3:39415328-39415347 None:intergenic 35.0%
! GTGTCAATTGTTACTTGCAA+AGG + chr8_3:39415541-39415560 None:intergenic 35.0%
ACTCTTGAAATGGCAAACAA+CGG + chr8_3:39415696-39415715 None:intergenic 35.0%
GGATCACTATACTCTTGAAA+TGG + chr8_3:39415706-39415725 None:intergenic 35.0%
! TAAGTTTTTGCACCTAAGTC+AGG + chr8_3:39415781-39415800 None:intergenic 35.0%
GCAAAAACTTACGTTGCTTA+TGG - chr8_3:39415790-39415809 Msa1287810:CDS 35.0%
! TCTAGGTCTAAAGCGTATAA+AGG - chr8_3:39415026-39415045 Msa1287810:intron 35.0%
GGCCTAAACAAATATGTAGT+TGG - chr8_3:39415074-39415093 Msa1287810:intron 35.0%
ATTACACCTCACCAAAGATA+CGG + chr8_3:39415210-39415229 None:intergenic 35.0%
!! CTTTCAACATTGGTGCTTTT+AGG - chr8_3:39415275-39415294 Msa1287810:intron 35.0%
TGACAGCATATGTCACATTT+GGG + chr8_3:39415327-39415346 None:intergenic 35.0%
TTGACAGCATATGTCACATT+TGG + chr8_3:39415328-39415347 None:intergenic 35.0%
! GTGTCAATTGTTACTTGCAA+AGG + chr8_3:39415541-39415560 None:intergenic 35.0%
ACTCTTGAAATGGCAAACAA+CGG + chr8_3:39415696-39415715 None:intergenic 35.0%
GGATCACTATACTCTTGAAA+TGG + chr8_3:39415706-39415725 None:intergenic 35.0%
! TAAGTTTTTGCACCTAAGTC+AGG + chr8_3:39415781-39415800 None:intergenic 35.0%
GCAAAAACTTACGTTGCTTA+TGG - chr8_3:39415790-39415809 Msa1287810:CDS 35.0%
GAATGTGCTCCAAAAGAACT+AGG - chr8_3:39414553-39414572 Msa1287810:intron 40.0%
TGAAACGCATCCTTCCAATT+GGG - chr8_3:39414602-39414621 Msa1287810:intron 40.0%
TAGATATCCTCCCAATTGGA+AGG + chr8_3:39414615-39414634 None:intergenic 40.0%
TCTATGAGGTCACTTGACAT+TGG + chr8_3:39414751-39414770 None:intergenic 40.0%
ATCTGAACAGACACTTGAAG+AGG + chr8_3:39414879-39414898 None:intergenic 40.0%
! TGATTGTTTGGCTAGTTGTG+AGG - chr8_3:39414922-39414941 Msa1287810:CDS 40.0%
GTTGTGAGGTATGCTTTCTT+TGG - chr8_3:39414936-39414955 Msa1287810:CDS 40.0%
AAATTTCCTCCCCGTATCTT+TGG - chr8_3:39415196-39415215 Msa1287810:intron 40.0%
TTACACCTCACCAAAGATAC+GGG + chr8_3:39415209-39415228 None:intergenic 40.0%
AAGAGCGAGTCTTTCAACAT+TGG - chr8_3:39415265-39415284 Msa1287810:intron 40.0%
GTAAGAACGAACATCACCAA+AGG + chr8_3:39415395-39415414 None:intergenic 40.0%
!!! TCTTTTAGCTTGAGCATCTC+CGG + chr8_3:39415616-39415635 None:intergenic 40.0%
AGATGCTCAAGCTAAAAGAC+TGG - chr8_3:39415617-39415636 Msa1287810:intron 40.0%
AACGGATAAACTCGTCACAA+AGG + chr8_3:39415678-39415697 None:intergenic 40.0%
! AGGTTTAGAATTCCAGATCG+AGG + chr8_3:39415727-39415746 None:intergenic 40.0%
! AAGTCAGGCTTTATGACATG+TGG + chr8_3:39415766-39415785 None:intergenic 40.0%
CATGTCATAAAGCCTGACTT+AGG - chr8_3:39415766-39415785 Msa1287810:intron 40.0%
TATGGAACCAAAGAAGAGCT+TGG - chr8_3:39415808-39415827 Msa1287810:CDS 40.0%
TTGGTGCGACAAGTATATGA+TGG - chr8_3:39415916-39415935 Msa1287810:CDS 40.0%
GAATGTGCTCCAAAAGAACT+AGG - chr8_3:39414553-39414572 Msa1287810:intron 40.0%
TGAAACGCATCCTTCCAATT+GGG - chr8_3:39414602-39414621 Msa1287810:intron 40.0%
TAGATATCCTCCCAATTGGA+AGG + chr8_3:39414615-39414634 None:intergenic 40.0%
TCTATGAGGTCACTTGACAT+TGG + chr8_3:39414751-39414770 None:intergenic 40.0%
ATCTGAACAGACACTTGAAG+AGG + chr8_3:39414879-39414898 None:intergenic 40.0%
! TGATTGTTTGGCTAGTTGTG+AGG - chr8_3:39414922-39414941 Msa1287810:CDS 40.0%
GTTGTGAGGTATGCTTTCTT+TGG - chr8_3:39414936-39414955 Msa1287810:CDS 40.0%
AAATTTCCTCCCCGTATCTT+TGG - chr8_3:39415196-39415215 Msa1287810:intron 40.0%
TTACACCTCACCAAAGATAC+GGG + chr8_3:39415209-39415228 None:intergenic 40.0%
AAGAGCGAGTCTTTCAACAT+TGG - chr8_3:39415265-39415284 Msa1287810:intron 40.0%
GTAAGAACGAACATCACCAA+AGG + chr8_3:39415395-39415414 None:intergenic 40.0%
!!! TCTTTTAGCTTGAGCATCTC+CGG + chr8_3:39415616-39415635 None:intergenic 40.0%
AGATGCTCAAGCTAAAAGAC+TGG - chr8_3:39415617-39415636 Msa1287810:intron 40.0%
AACGGATAAACTCGTCACAA+AGG + chr8_3:39415678-39415697 None:intergenic 40.0%
! AGGTTTAGAATTCCAGATCG+AGG + chr8_3:39415727-39415746 None:intergenic 40.0%
! AAGTCAGGCTTTATGACATG+TGG + chr8_3:39415766-39415785 None:intergenic 40.0%
CATGTCATAAAGCCTGACTT+AGG - chr8_3:39415766-39415785 Msa1287810:intron 40.0%
TATGGAACCAAAGAAGAGCT+TGG - chr8_3:39415808-39415827 Msa1287810:CDS 40.0%
TTGGTGCGACAAGTATATGA+TGG - chr8_3:39415916-39415935 Msa1287810:CDS 40.0%
TGTGCTCCAAAAGAACTAGG+TGG - chr8_3:39414556-39414575 Msa1287810:intron 45.0%
!! CCACAACCACCTAGTTCTTT+TGG + chr8_3:39414565-39414584 None:intergenic 45.0%
CCAAAAGAACTAGGTGGTTG+TGG - chr8_3:39414562-39414581 Msa1287810:intron 45.0%
AAAGAACTAGGTGGTTGTGG+TGG - chr8_3:39414565-39414584 Msa1287810:intron 45.0%
CTGAAACGCATCCTTCCAAT+TGG - chr8_3:39414601-39414620 Msa1287810:intron 45.0%
TGAGGTCACTTGACATTGGA+TGG + chr8_3:39414747-39414766 None:intergenic 45.0%
! CGCCGTTTCTCCAGTATTTT+TGG + chr8_3:39414793-39414812 None:intergenic 45.0%
TACGTTCTCAAACAAGGGAC+AGG - chr8_3:39414830-39414849 Msa1287810:CDS 45.0%
TACACCTCACCAAAGATACG+GGG + chr8_3:39415208-39415227 None:intergenic 45.0%
ATAAACTCGTCACAAAGGCG+CGG + chr8_3:39415673-39415692 None:intergenic 45.0%
GAGTATAGTGATCCTCGATC+TGG - chr8_3:39415712-39415731 Msa1287810:intron 45.0%
! TCAGGCTTTATGACATGTGG+TGG + chr8_3:39415763-39415782 None:intergenic 45.0%
TGTGCTCCAAAAGAACTAGG+TGG - chr8_3:39414556-39414575 Msa1287810:intron 45.0%
!! CCACAACCACCTAGTTCTTT+TGG + chr8_3:39414565-39414584 None:intergenic 45.0%
CCAAAAGAACTAGGTGGTTG+TGG - chr8_3:39414562-39414581 Msa1287810:intron 45.0%
AAAGAACTAGGTGGTTGTGG+TGG - chr8_3:39414565-39414584 Msa1287810:intron 45.0%
CTGAAACGCATCCTTCCAAT+TGG - chr8_3:39414601-39414620 Msa1287810:intron 45.0%
TGAGGTCACTTGACATTGGA+TGG + chr8_3:39414747-39414766 None:intergenic 45.0%
! CGCCGTTTCTCCAGTATTTT+TGG + chr8_3:39414793-39414812 None:intergenic 45.0%
TACGTTCTCAAACAAGGGAC+AGG - chr8_3:39414830-39414849 Msa1287810:CDS 45.0%
TACACCTCACCAAAGATACG+GGG + chr8_3:39415208-39415227 None:intergenic 45.0%
ATAAACTCGTCACAAAGGCG+CGG + chr8_3:39415673-39415692 None:intergenic 45.0%
GAGTATAGTGATCCTCGATC+TGG - chr8_3:39415712-39415731 Msa1287810:intron 45.0%
! TCAGGCTTTATGACATGTGG+TGG + chr8_3:39415763-39415782 None:intergenic 45.0%
AACGCATCCTTCCAATTGGG+AGG - chr8_3:39414605-39414624 Msa1287810:intron 50.0%
GACACTCGCCAGTTCTTTGA+AGG - chr8_3:39415556-39415575 Msa1287810:intron 50.0%
GGAACCAAAGAAGAGCTTGG+CGG - chr8_3:39415811-39415830 Msa1287810:CDS 50.0%
CCATTGTGATATGGCAGACG+CGG - chr8_3:39415855-39415874 Msa1287810:CDS 50.0%
AACGCATCCTTCCAATTGGG+AGG - chr8_3:39414605-39414624 Msa1287810:intron 50.0%
GACACTCGCCAGTTCTTTGA+AGG - chr8_3:39415556-39415575 Msa1287810:intron 50.0%
GGAACCAAAGAAGAGCTTGG+CGG - chr8_3:39415811-39415830 Msa1287810:CDS 50.0%
CCATTGTGATATGGCAGACG+CGG - chr8_3:39415855-39415874 Msa1287810:CDS 50.0%
TGGTTGTGGTGGCTGTGTGA+TGG - chr8_3:39414576-39414595 Msa1287810:intron 55.0%
TCCTCCCCGTATCTTTGGTG+AGG - chr8_3:39415201-39415220 Msa1287810:intron 55.0%
ACCTCACCAAAGATACGGGG+AGG + chr8_3:39415205-39415224 None:intergenic 55.0%
GTGGTGGCAACTTTGCAGCA+AGG + chr8_3:39415747-39415766 None:intergenic 55.0%
ACCAAAGAAGAGCTTGGCGG+AGG - chr8_3:39415814-39415833 Msa1287810:CDS 55.0%
TCCTCCGCCAAGCTCTTCTT+TGG + chr8_3:39415818-39415837 None:intergenic 55.0%
CCGCGTCTGCCATATCACAA+TGG + chr8_3:39415858-39415877 None:intergenic 55.0%
TGGTTGTGGTGGCTGTGTGA+TGG - chr8_3:39414576-39414595 Msa1287810:intron 55.0%
TCCTCCCCGTATCTTTGGTG+AGG - chr8_3:39415201-39415220 Msa1287810:intron 55.0%
ACCTCACCAAAGATACGGGG+AGG + chr8_3:39415205-39415224 None:intergenic 55.0%
GTGGTGGCAACTTTGCAGCA+AGG + chr8_3:39415747-39415766 None:intergenic 55.0%
ACCAAAGAAGAGCTTGGCGG+AGG - chr8_3:39415814-39415833 Msa1287810:CDS 55.0%
TCCTCCGCCAAGCTCTTCTT+TGG + chr8_3:39415818-39415837 None:intergenic 55.0%
CCGCGTCTGCCATATCACAA+TGG + chr8_3:39415858-39415877 None:intergenic 55.0%
GAGCTTGGCGGAGGAGATTC+TGG - chr8_3:39415823-39415842 Msa1287810:CDS 60.0%
GAGCTTGGCGGAGGAGATTC+TGG - chr8_3:39415823-39415842 Msa1287810:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 39414514 39416011 39414514 ID=Msa1287810;Name=Msa1287810
chr8_3 mRNA 39414514 39416011 39414514 ID=Msa1287810-mRNA-1;Parent=Msa1287810;Name=Msa1287810-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|206
chr8_3 exon 39415768 39416011 39415768 ID=Msa1287810-mRNA-1:exon:11019;Parent=Msa1287810-mRNA-1
chr8_3 exon 39415582 39415628 39415582 ID=Msa1287810-mRNA-1:exon:11018;Parent=Msa1287810-mRNA-1
chr8_3 exon 39414649 39414957 39414649 ID=Msa1287810-mRNA-1:exon:11017;Parent=Msa1287810-mRNA-1
chr8_3 exon 39414514 39414534 39414514 ID=Msa1287810-mRNA-1:exon:11016;Parent=Msa1287810-mRNA-1
chr8_3 CDS 39415768 39416011 39415768 ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
chr8_3 CDS 39415582 39415628 39415582 ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
chr8_3 CDS 39414649 39414957 39414649 ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
chr8_3 CDS 39414514 39414534 39414514 ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
Gene Sequence

>Msa1287810

ATGTTGACCAAATGGAATGTGAATAGTGATGAAAGTGTTGAATGTGCTCCAAAAGAACTAGGTGGTTGTGGTGGCTGTGTGATGGAGCTGAAACGCATCCTTCCAATTGGGAGGATATCTAAATTGGTAACAAAAGCTCGCCATTTGAAGAAACATTTTTGCAAAATTGAAAAACAAAAGAATGTTGAGAAAGAAAGAATATCAAGTTGCAAGAATTACAATGACATATACCATCCAATGTCAAATGATAACTCAAATGTAAAGGCTATTGATTGTTTGGCTAGTTGTGAGTTCTTTGAAGGTTATAAAGAGGGAAGAAGATATATAAATTTCTGGCCGGAGATGCTCAAGCTAAAAGACTGGCCACCTTATGATGAGTTTGAAAATGTCTTGCCGCGCCTTTGTGACGAGTTTATCCGTTGTTTGCCATTTCAAGAGTATAGTGATCCTCGATCTGGAATTCTAAACCTTGCTGCAAAGTTGCCACCACATGTCATAAAGCCTGACTTAGGTGCAAAAACTTACGTTGCTTATGGAACCAAAGAAGAGCTTGGCGGAGGAGATTCTGGTACAAAACTCCATTGTGATATGGCAGACGCGGTGAAATTATCAGATGAATAA

Protein sequence

>Msa1287810

MLTKWNVNSDESVECAPKELGGCGGCVMELKRILPIGRISKLVTKARHLKKHFCKIEKQKNVEKERISSCKNYNDIYHPMSNDNSNVKAIDCLASCEFFEGYKEGRRYINFWPEMLKLKDWPPYDEFENVLPRLCDEFIRCLPFQEYSDPRSGILNLAAKLPPHVIKPDLGAKTYVAYGTKEELGGGDSGTKLHCDMADAVKLSDE*