AlfalfaGEDB | Msa1287810

M. sativa cultivar zhongmu-4 / Msa1287810

KEGG: K15601|K21989
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287810	sp\|Q9SSE9\|JMJ25_ARATH	49.296	142	62	2	69	203	550	688	3.06e-35	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287810	A0A396J3U9	65.769	260	26	3	1	203	357	610	9.28e-101	318

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012700	Msa1287810	0.845027	5.244969e-59	-8.615850e-47
Msa0013750	Msa1287810	0.866267	3.229920e-65	-8.615850e-47
Msa0014330	Msa1287810	0.824126	9.558341e-54	-8.615850e-47
Msa0015750	Msa1287810	0.889754	1.824464e-73	-8.615850e-47
Msa0016570	Msa1287810	0.889731	1.862718e-73	-8.615850e-47
Msa0016580	Msa1287810	0.861977	7.017252e-64	-8.615850e-47
Msa0028380	Msa1287810	0.833665	4.680075e-56	-8.615850e-47
Msa0028480	Msa1287810	0.825481	4.579677e-54	-8.615850e-47
Msa0071500	Msa1287810	0.804809	1.807847e-49	-8.615850e-47
Msa0092630	Msa1287810	0.853524	2.257586e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287810	MtrunA17_Chr2g0289121	65.769	260	26	3	1	203	357	610	1.79e-104	318
Msa1287810	MtrunA17_Chr8g0361381	61.905	210	21	3	49	201	1	208	1.97e-80	239
Msa1287810	MtrunA17_Chr2g0289031	80.800	125	17	1	86	203	70	194	2.82e-69	216
Msa1287810	MtrunA17_Chr2g0289091	86.792	106	14	0	98	203	28	133	6.93e-62	198
Msa1287810	MtrunA17_Chr4g0075261	64.234	137	42	1	74	203	484	620	1.53e-56	191
Msa1287810	MtrunA17_Chr1g0211711	60.000	125	43	1	86	203	706	830	1.20e-43	155
Msa1287810	MtrunA17_Chr1g0147021	59.542	131	45	2	80	203	1203	1332	1.49e-43	155
Msa1287810	MtrunA17_Chr1g0183311	59.200	125	44	1	86	203	511	635	1.47e-42	152
Msa1287810	MtrunA17_Chr1g0211691	58.400	125	45	1	86	203	711	835	6.44e-42	150
Msa1287810	MtrunA17_Chr7g0275771	53.435	131	54	1	80	203	508	638	5.31e-41	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287810	AT1G11950.2	69.118	136	35	1	75	203	532	667	2.21e-59	199
Msa1287810	AT1G11950.1	69.118	136	35	1	75	203	532	667	2.78e-59	199
Msa1287810	AT1G11950.3	69.118	136	35	1	75	203	532	667	2.78e-59	199
Msa1287810	AT1G62310.1	66.667	141	37	2	70	203	548	685	1.71e-57	194
Msa1287810	AT4G00990.1	55.634	142	56	1	69	203	414	555	5.67e-45	159
Msa1287810	AT4G00990.2	55.634	142	56	1	69	203	414	555	6.73e-45	159
Msa1287810	AT4G00990.3	55.634	142	56	1	69	203	414	555	6.75e-45	159
Msa1287810	AT3G07610.1	49.296	142	62	2	69	203	550	688	3.12e-36	134
Msa1287810	AT3G07610.2	50.000	140	60	2	69	201	550	686	1.03e-35	133
Msa1287810	AT3G07610.3	49.640	139	60	2	69	200	550	685	2.13e-35	132

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Find 43 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTAGGTGGTTGTGG+TGG	0.707130	8_3:-39415938	Msa1287810:CDS
AACGCATCCTTCCAATTGGG+AGG	0.652477	8_3:-39415898	Msa1287810:CDS
AACGGATAAACTCGTCACAA+AGG	0.603909	8_3:+39414828	None:intergenic
AAGATATATAAATTTCTGGC+CGG	0.566135	8_3:-39414909	Msa1287810:CDS
AAGTCAGGCTTTATGACATG+TGG	0.640339	8_3:+39414740	None:intergenic
AATTGGGAGGATATCTAAAT+TGG	0.230202	8_3:-39415885	Msa1287810:CDS
AATTTAGATATCCTCCCAAT+TGG	0.438740	8_3:+39415887	None:intergenic
ACCAAAGAAGAGCTTGGCGG+AGG	0.542386	8_3:-39414689	Msa1287810:CDS
ACTCTTGAAATGGCAAACAA+CGG	0.651117	8_3:+39414810	None:intergenic
AGAGGGTCATGTTGACCAAA+TGG	0.479022	8_3:-39415997	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCACTATTCACATTCCATT+TGG	+	chr8_3:39414524-39414543	None:intergenic	30.0%
AATTTAGATATCCTCCCAAT+TGG	+	chr8_3:39414619-39414638	None:intergenic	30.0%
AATTGGGAGGATATCTAAAT+TGG	-	chr8_3:39414618-39414637	Msa1287810:intron	30.0%
TTCCAAAAATACTGGAGAAA+CGG	-	chr8_3:39414788-39414807	Msa1287810:CDS	30.0%
AGAACGTAAGATATTAGAAC+GGG	+	chr8_3:39414818-39414837	None:intergenic	30.0%
GAGAACGTAAGATATTAGAA+CGG	+	chr8_3:39414819-39414838	None:intergenic	30.0%
ATATCTTACGTTCTCAAACA+AGG	-	chr8_3:39414824-39414843	Msa1287810:CDS	30.0%
TATCTTACGTTCTCAAACAA+GGG	-	chr8_3:39414825-39414844	Msa1287810:CDS	30.0%
TACTTGCAAAGGTTTACATA+GGG	+	chr8_3:39415530-39415549	None:intergenic	30.0%
TTACTTGCAAAGGTTTACAT+AGG	+	chr8_3:39415531-39415550	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	39414514	39416011	39414514	ID=Msa1287810;Name=Msa1287810
chr8_3	mRNA	39414514	39416011	39414514	ID=Msa1287810-mRNA-1;Parent=Msa1287810;Name=Msa1287810-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|4\|0\|206
chr8_3	exon	39415768	39416011	39415768	ID=Msa1287810-mRNA-1:exon:11019;Parent=Msa1287810-mRNA-1
chr8_3	exon	39415582	39415628	39415582	ID=Msa1287810-mRNA-1:exon:11018;Parent=Msa1287810-mRNA-1
chr8_3	exon	39414649	39414957	39414649	ID=Msa1287810-mRNA-1:exon:11017;Parent=Msa1287810-mRNA-1
chr8_3	exon	39414514	39414534	39414514	ID=Msa1287810-mRNA-1:exon:11016;Parent=Msa1287810-mRNA-1
chr8_3	CDS	39415768	39416011	39415768	ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
chr8_3	CDS	39415582	39415628	39415582	ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
chr8_3	CDS	39414649	39414957	39414649	ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1
chr8_3	CDS	39414514	39414534	39414514	ID=Msa1287810-mRNA-1:cds;Parent=Msa1287810-mRNA-1

Gene Sequence

>Msa1287810

ATGTTGACCAAATGGAATGTGAATAGTGATGAAAGTGTTGAATGTGCTCCAAAAGAACTAGGTGGTTGTGGTGGCTGTGTGATGGAGCTGAAACGCATCCTTCCAATTGGGAGGATATCTAAATTGGTAACAAAAGCTCGCCATTTGAAGAAACATTTTTGCAAAATTGAAAAACAAAAGAATGTTGAGAAAGAAAGAATATCAAGTTGCAAGAATTACAATGACATATACCATCCAATGTCAAATGATAACTCAAATGTAAAGGCTATTGATTGTTTGGCTAGTTGTGAGTTCTTTGAAGGTTATAAAGAGGGAAGAAGATATATAAATTTCTGGCCGGAGATGCTCAAGCTAAAAGACTGGCCACCTTATGATGAGTTTGAAAATGTCTTGCCGCGCCTTTGTGACGAGTTTATCCGTTGTTTGCCATTTCAAGAGTATAGTGATCCTCGATCTGGAATTCTAAACCTTGCTGCAAAGTTGCCACCACATGTCATAAAGCCTGACTTAGGTGCAAAAACTTACGTTGCTTATGGAACCAAAGAAGAGCTTGGCGGAGGAGATTCTGGTACAAAACTCCATTGTGATATGGCAGACGCGGTGAAATTATCAGATGAATAA

Protein sequence

>Msa1287810

MLTKWNVNSDESVECAPKELGGCGGCVMELKRILPIGRISKLVTKARHLKKHFCKIEKQKNVEKERISSCKNYNDIYHPMSNDNSNVKAIDCLASCEFFEGYKEGRRYINFWPEMLKLKDWPPYDEFENVLPRLCDEFIRCLPFQEYSDPRSGILNLAAKLPPHVIKPDLGAKTYVAYGTKEELGGGDSGTKLHCDMADAVKLSDE*